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revision 1.96 by edhill, Mon Aug 9 02:28:51 2004 UTC revision 1.146 by edhill, Fri Apr 7 02:53:55 2006 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 122  EOF Line 130  EOF
130        stop        stop
131        end        end
132  EOF  EOF
133      test -f Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
135  .SUFFIXES:  .SUFFIXES:
136  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
137          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
138            $LN \$< \$@
139  EOF  EOF
140      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141      RETVAL=$?      RETVAL=$?
# Line 148  EOF Line 156  EOF
156              return              return
157          fi          fi
158      fi      fi
159      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
160      test -f Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162      #  If we make it here, use the extensions      #  If we make it here, use the extensions
163      FS=$tfs      FS=$tfs
# Line 181  look_for_makedepend()  { Line 189  look_for_makedepend()  {
189      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
190          which makedepend > /dev/null 2>&1          which makedepend > /dev/null 2>&1
191          RV0=$?          RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
202        program test        program test
203        write(*,*) 'test'        write(*,*) 'test'
# Line 189  look_for_makedepend()  { Line 206  look_for_makedepend()  {
206  EOF  EOF
207          makedepend genmake_tc.f > /dev/null 2>&1          makedepend genmake_tc.f > /dev/null 2>&1
208          RV1=$?          RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211          if test "x${RV0}${RV1}" = x00 ; then          if test "x${RV0}${RV1}" = x00 ; then
212              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
213          else          else
# Line 237  build_cyrus_makedepend()  { Line 256  build_cyrus_makedepend()  {
256      fi      fi
257  }  }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 310  EOF Line 364  EOF
364    
365      #================================================================      #================================================================
366      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
367      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 342  EOF Line 396  EOF
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 516  Usage: "$0" [OPTIONS] Line 578  Usage: "$0" [OPTIONS]
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s with PAPI per timestep
591        -foolad | --foolad
592              Fool the AD code generator
593        -papi | --papi
594              Performance analysis with PAPI
595        -hpmt | --hpmt
596              Performance analysis with the HPM Toolkit
597    
598        -gsl | --gsl
599              Use GSL to control floating point rounding and precision
600    
601      -mpi | --mpi      -mpi | --mpi
602            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
603      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
# Line 523  Usage: "$0" [OPTIONS] Line 605  Usage: "$0" [OPTIONS]
605            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
606            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
607    
608        -es | --es | -embed-source | --embed-source
609              Embed a tarball containing the full source code
610              (including the Makefile, etc.) used to build the
611              executable [off by default]
612    
613      -bash NAME      -bash NAME
614            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
615    
# Line 581  WARNING: Please contact <MITgcm-support@ Line 668  WARNING: Please contact <MITgcm-support@
668  EOF  EOF
669          return 1          return 1
670      fi      fi
671      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
672        subroutine tcall( string )        subroutine tcall( string )
673        character*(*) string        character*(*) string
674        call tsub( string )        call tsub( string )
675        end        end
676  EOF  EOF
677      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
678      RETVAL=$?      RETVAL=$?
679      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
680          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 653  void FC_NAMEMANGLE(cloc) ( double *curti Line 740  void FC_NAMEMANGLE(cloc) ( double *curti
740   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
741  }  }
742  EOF  EOF
743      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
744      RET_C=$?      RET_C=$?
745      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
746        program hello        program hello
747        Real*8 wtime        REAL*8 wtime
748        external cloc        external cloc
749        call cloc(wtime)        call cloc(wtime)
750        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
751        end program hello        end
752  EOF  EOF
753      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
754      RET_F=$?      RET_F=$?
755      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
756      RETVAL=$?      RETVAL=$?
757      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
758          HAVE_CLOC=t          HAVE_CLOC=t
# Line 675  EOF Line 762  EOF
762  }  }
763    
764    
765    check_HAVE_SIGREG()  {
766        get_fortran_c_namemangling
767        cat <<EOF > genmake_tc_1.c
768    $FC_NAMEMANGLE
769    #include <stdlib.h>
770    #include <stdio.h>
771    #include <signal.h>
772    #include <errno.h>
773    #include <ucontext.h>
774    
775    int * ip;
776    
777    static void killhandler(
778        unsigned int sn, siginfo_t  si, struct ucontext *sc )
779    {
780        *ip = *ip + 1;
781        return;
782    }
783    
784    void FC_NAMEMANGLE(sigreg) (int * aip)
785    {
786        struct sigaction s;
787        ip = aip;
788        s.sa_flags = SA_SIGINFO;
789        s.sa_sigaction = (void *)killhandler;
790        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
791            printf("Sigaction returned error = %d\n", errno);
792            exit(0);
793        }
794        return;
795    }
796    EOF
797        make genmake_tc_1.o >> genmake_warnings 2>&1
798        RET_C=$?
799        cat <<EOF > genmake_tc_2.$FS
800          program hello
801          integer anint
802          common /iv/ anint
803          external sigreg
804          call sigreg(anint)
805          end
806    EOF
807        echo >> genmake_warnings
808        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
809        cat genmake_tc_2.$FS >> genmake_warnings
810        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
811        echo $COMM >> genmake_warnings
812        $COMM >> genmake_warnings 2>&1
813        RETVAL=$?
814        if test "x$RETVAL" = x0 ; then
815            HAVE_SIGREG=t
816            DEFINES="$DEFINES -DHAVE_SIGREG"
817        fi
818        rm -f genmake_tc*
819    }
820    
821    
822    check_HAVE_SETRLSTK()  {
823        get_fortran_c_namemangling
824        cat <<EOF > genmake_tc_1.c
825    $FC_NAMEMANGLE
826    #include <sys/time.h>
827    #include <sys/resource.h>
828    #include <unistd.h>
829    void FC_NAMEMANGLE(setrlstk) ()
830    {
831        struct rlimit rls;
832        rls.rlim_cur = RLIM_INFINITY;
833        rls.rlim_max = RLIM_INFINITY;
834        setrlimit(RLIMIT_STACK, &rls);
835        return;
836    }
837    EOF
838        make genmake_tc_1.o >> genmake_warnings 2>&1
839        RET_C=$?
840        cat <<EOF > genmake_tc_2.$FS
841          program hello
842          external setrlstk
843          call setrlstk()
844          end
845    EOF
846        echo >> genmake_warnings
847        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
848        cat genmake_tc_2.$FS >> genmake_warnings
849        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
850        echo $COMM >> genmake_warnings
851        $COMM >> genmake_warnings 2>&1
852        RETVAL=$?
853        if test "x$RETVAL" = x0 ; then
854            HAVE_SETRLSTK=t
855            DEFINES="$DEFINES -DHAVE_SETRLSTK"
856        fi
857        rm -f genmake_tc*
858    }
859    
860    
861    check_HAVE_STAT()  {
862        get_fortran_c_namemangling
863        cat <<EOF > genmake_tc_1.c
864    $FC_NAMEMANGLE
865    #include <stdio.h>
866    #include <stdlib.h>
867    #include <unistd.h>
868    #include <sys/stat.h>
869    #include <sys/types.h>
870    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
871    {
872        char name[512];
873        struct stat astat;
874    
875        name[0] = 'a'; name[1] = '\0';
876        if (! stat(name, &astat))
877            *nbyte = (int)(astat.st_size);
878        else
879            *nbyte = -1;
880    }
881    EOF
882        make genmake_tc_1.o >> genmake_tc.log 2>&1
883        RET_C=$?
884        cat <<EOF > genmake_tc_2.$FS
885          program hello
886          integer nbyte
887          call tfsize(nbyte)
888          print *," HELLO WORLD", nbyte
889          end
890    EOF
891        echo >> genmake_warnings
892        echo "running: check_HAVE_STAT()" >> genmake_warnings
893        cat genmake_tc_2.$FS >> genmake_warnings
894        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
895        echo $COMM >> genmake_warnings
896        $COMM >> genmake_tc.log 2>&1
897        RETVAL=$?
898        if test "x$RETVAL" = x0 ; then
899            HAVE_STAT=t
900            DEFINES="$DEFINES -DHAVE_STAT"
901        fi
902        rm -f genmake_tc*
903    }
904    
905    
906  check_netcdf_libs()  {  check_netcdf_libs()  {
907      echo "" > genmake_tnc.log      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
908      cat <<EOF > genmake_tnc.for          return
909        fi
910        echo >> genmake_warnings
911        echo "running: check_netcdf_libs()" >> genmake_warnings
912        cat <<EOF > genmake_tnc.F
913        program fgennc        program fgennc
914  #include "netcdf.inc"  #include "netcdf.inc"
915    EOF
916        if test ! "x$MPI" = x ; then
917            echo '#include "mpif.h"' >> genmake_tnc.F
918        fi
919        cat <<EOF >> genmake_tnc.F
920        integer iret, ncid, xid        integer iret, ncid, xid
921        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
922        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 689  check_netcdf_libs()  { Line 926  check_netcdf_libs()  {
926        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
927        end        end
928  EOF  EOF
929      #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
930      #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"      cat genmake_tnc.F >> genmake_tnc.log
931      #echo "$LINK -o genmake_tnc.o $LIBS"      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
932      $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \      RET_CPP=f
933          &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f  \      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"
934        echo "$COMM" >> genmake_tnc.log
935        $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
936        if test "x$RET_CPP" = xf ; then
937            echo "  WARNING: CPP failed to pre-process the netcdf test." \
938                >> genmake_tnc.log
939            echo "    Please check that \$INCLUDES is properly set." \
940                >> genmake_tnc.log
941        fi
942        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
943        echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log
944        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
945          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
946      RET_COMPILE=$?      RET_COMPILE=$?
947      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
948      RETVAL=$?  
949      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
950        #EH3  execution or cannot support it (eg. cross-compilers)
951        #EH3
952        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
953        #EH3 RETVAL=$?
954        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
955    
956        if test "x$RET_COMPILE" = x0 ; then
957          HAVE_NETCDF=t          HAVE_NETCDF=t
958      else      else
959          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
960          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
961              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log
962              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
963            echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
964            $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
965                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
966                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
967          RET_COMPILE=$?          RET_COMPILE=$?
968          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
969          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
970              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
971              HAVE_NETCDF=t              HAVE_NETCDF=t
         else  
             cat genmake_tnc.log >> genmake_warnings  
972          fi          fi
973      fi      fi
974      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 731  PLATFORM= Line 987  PLATFORM=
987  LN=  LN=
988  S64=  S64=
989  KPP=  KPP=
990  FC=  #FC=
991  #CC=gcc  #CC=gcc
992  CPP=  #CPP=
993  LINK=  LINK=
994  DEFINES=  DEFINES=
995  PACKAGES=  PACKAGES=
996  ENABLE=  ENABLE=
997  DISABLE=  DISABLE=
998  MAKEFILE=  # MAKEFILE=
999  #MAKEDEPEND=  # MAKEDEPEND=
1000  PDEPEND=  PDEPEND=
1001  DUMPSTATE=t  DUMPSTATE=t
1002  PDEFAULT=  PDEFAULT=
1003  OPTFILE=  OPTFILE=
1004  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1005  FFLAGS=  FFLAGS=
1006  FOPTIM=  FOPTIM=
1007  CFLAGS=  CFLAGS=
# Line 758  NOOPTFILES= Line 1014  NOOPTFILES=
1014  NOOPTFLAGS=  NOOPTFLAGS=
1015  MPI=  MPI=
1016  MPIPATH=  MPIPATH=
1017    TS=
1018    PAPIS=
1019    FOOLAD=
1020    PAPI=
1021    HPMT=
1022    GSL=
1023    HAVE_TEST_L=
1024    
1025  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1026  HAVE_SYSTEM=  HAVE_SYSTEM=
1027  HAVE_FDATE=  HAVE_FDATE=
1028  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1029  HAVE_CLOC=  HAVE_CLOC=
1030    HAVE_SETRLSTK=
1031    HAVE_STAT=
1032  HAVE_NETCDF=  HAVE_NETCDF=
1033  HAVE_ETIME=  HAVE_ETIME=
1034    IGNORE_TIME=
1035    
1036  MODS=  MODS=
1037  TOOLSDIR=  TOOLSDIR=
# Line 776  STANDARDDIRS="USE_THE_DEFAULT" Line 1042  STANDARDDIRS="USE_THE_DEFAULT"
1042  G2ARGS=  G2ARGS=
1043  BASH=  BASH=
1044  PWD=`pwd`  PWD=`pwd`
1045  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1046  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1047  THISHOSTNAME=`hostname`  EMBED_SRC=
1048    THISHOST=`hostname`
1049  THISCWD=`pwd`  THISCWD=`pwd`
1050  THISDATE=`date`  THISDATE=`date`
1051    THISUSER=`echo $USER`
1052    THISVER=
1053  MACHINE=`uname -a`  MACHINE=`uname -a`
1054  EXECUTABLE=  EXECUTABLE=
1055  EXEHOOK=  EXEHOOK=
# Line 809  TAMC_EXTRA= Line 1078  TAMC_EXTRA=
1078    
1079  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1080  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1081  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PAPI HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"
1082    
1083  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1084  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
1085  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1086  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1087  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1088  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1089    
# Line 855  else Line 1124  else
1124      echo "none found"      echo "none found"
1125  fi  fi
1126    
1127  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1128  #OPTIONS=  #OPTIONS=
1129  #n=0  #n=0
1130  #for i ; do  #for i ; do
# Line 867  fi Line 1136  fi
1136  #done  #done
1137  #parse_options  #parse_options
1138  ac_prev=  ac_prev=
1139  for ac_option in $@ ; do  for ac_option in "$@" ; do
1140    
1141      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1142    
# Line 989  for ac_option in $@ ; do Line 1258  for ac_option in $@ ; do
1258          -noieee | --noieee)          -noieee | --noieee)
1259              IEEE= ;;              IEEE= ;;
1260    
1261            -ts | --ts)
1262                TS=true ;;
1263            -papis | --papis)
1264                PAPIS=true ;;
1265            -foolad | --foolad)
1266                FOOLAD=true ;;
1267            -papi | --papi)
1268                PAPI=true ;;
1269            -hpmt | --hpmt)
1270                HPMT=true ;;
1271    
1272            -gsl | --gsl)
1273                GSL=true ;;
1274    
1275          -mpi | --mpi)          -mpi | --mpi)
1276              MPI=true ;;              MPI=true ;;
1277          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 1012  for ac_option in $@ ; do Line 1295  for ac_option in $@ ; do
1295              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1296          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1297              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1298            
1299            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1300                IGNORE_TIME="-DIGNORE_TIME" ;;
1301    
1302            -es | --es | -embed-source | --embed-source)
1303                EMBED_SRC=t ;;
1304    
1305          -*)          -*)
1306              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 1027  for ac_option in $@ ; do Line 1316  for ac_option in $@ ; do
1316            
1317  done  done
1318    
1319    
1320  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1321      echo      echo
1322      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1039  if test -f ./.genmakerc ; then Line 1329  if test -f ./.genmakerc ; then
1329      echo      echo
1330  fi  fi
1331    
1332    #  Find the MITgcm ${ROOTDIR}
1333  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1334      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1335      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1336          ROOTDIR=".."          ROOTDIR=".."
1337      else      else
# Line 1065  if test ! -d ${ROOTDIR} ; then Line 1356  if test ! -d ${ROOTDIR} ; then
1356      exit 1      exit 1
1357  fi  fi
1358    
1359    #  Find the MITgcm ${THISVER}
1360    if test -f "${ROOTDIR}/doc/tag-index" ; then
1361        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1362    fi
1363    
1364    if test "x$MAKEFILE" = x ; then
1365        MAKEFILE="Makefile"
1366    fi
1367    
1368  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1369  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1370      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 1094  if test "x$OPTFILE" != xNONE ; then Line 1394  if test "x$OPTFILE" != xNONE ; then
1394      fi      fi
1395  fi  fi
1396    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1397  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1398  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1399      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1124  if test "x${AD_OPTFILE}" != xNONE ; then Line 1421  if test "x${AD_OPTFILE}" != xNONE ; then
1421      fi      fi
1422  fi  fi
1423    
1424    #====================================================================
1425    #  Set default values if not set by the optfile
1426    #
1427  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1428  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1429  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
# Line 1200  Error: The command "ln -s" failed -- ple Line 1500  Error: The command "ln -s" failed -- ple
1500  EOF  EOF
1501      exit 1      exit 1
1502  fi  fi
1503    test -L genmake_tlink > /dev/null 2>&1
1504    RETVAL=$?
1505    if test "x$RETVAL" = x0 ; then
1506        HAVE_TEST_L=t
1507    fi
1508  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1509    
1510  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1210  if test ! "x$MPI" = x ; then Line 1515  if test ! "x$MPI" = x ; then
1515        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1516  fi  fi
1517    
1518    if test ! "x$TS" = x ; then
1519          echo "  Turning on timing per timestep"
1520          if test ! "x$FOOLAD" = x ; then
1521                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1522          else
1523                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1524          fi
1525    fi
1526    if test ! "x$PAPIS" = x ; then
1527          echo "  Turning on PAPI flop summary per timestep"
1528          echo "  Please make sure PAPIINC, PAPILIB are defined"
1529          if test ! "x$FOOLAD" = x ; then
1530                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1531          else
1532                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1533          fi
1534          INCLUDES="$INCLUDES $PAPIINC"
1535          LIBS="$LIBS $PAPILIB"
1536    fi
1537    if test ! "x$PAPI" = x ; then
1538          if test ! "x$PAPIS" = x ; then
1539              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1540              echo "  Sticking with PAPI flop summary per timestep!"
1541          else
1542              echo "  Turning on performance analysis with PAPI"
1543              echo "  Please make sure PAPIINC, PAPILIB are defined"
1544              DEFINES="$DEFINES -DUSE_PAPI"
1545              INCLUDES="$INCLUDES $PAPIINC"
1546              LIBS="$LIBS $PAPILIB"
1547          fi
1548    fi
1549    if test ! "x$HPMT" = x ; then
1550          if test ! "x$PAPI" = x ; then
1551              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1552              echo "  Sticking with PAPI!"
1553          else
1554              echo "  Turning on performance analysis with the HPM Toolkit"
1555              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1556              DEFINES="$DEFINES -DUSE_LIBHPM"
1557              INCLUDES="$INCLUDES $HPMTINC"
1558              LIBS="$LIBS $HPMTLIB"
1559          fi
1560    fi
1561    if test ! "x$GSL" = x ; then
1562          echo "  Turning on use of GSL to control floating point calculations"
1563          echo "  Please make sure GSLINC, GSLLIB are defined"
1564          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1565          INCLUDES="$INCLUDES $GSLINC"
1566          LIBS="$LIBS $GSLLIB"
1567    fi
1568    
1569  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1570  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1571  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1572        program hello        program hello
1573        call system('echo hi')        call system('echo hi')
1574        end        end
1575  EOF  EOF
1576  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1577  RETVAL=$?  RETVAL=$?
1578  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1579      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1230  fi Line 1586  fi
1586  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1587    
1588  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1589  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1590        program hello        program hello
1591        CHARACTER(128) string        CHARACTER*(128) string
1592        string = ' '        string = ' '
1593        call fdate( string )        call fdate( string )
1594        print *, string        print *, string
1595        end        end
1596  EOF  EOF
1597  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1598  RETVAL=$?  RETVAL=$?
1599  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1600      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1251  fi Line 1607  fi
1607  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1608    
1609  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1610  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1611        program hello        program hello
1612        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1613        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1260  cat > genmake_tcomp.f <<EOF Line 1616  cat > genmake_tcomp.f <<EOF
1616        print *, tarray        print *, tarray
1617        end        end
1618  EOF  EOF
1619  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1620  RETVAL=$?  RETVAL=$?
1621  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1622      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1278  if test "x$HAVE_CLOC" != x ; then Line 1634  if test "x$HAVE_CLOC" != x ; then
1634      echo "yes"      echo "yes"
1635  else  else
1636      echo "no"      echo "no"
1637        if test "x$EMBED_SRC" = xt ; then
1638            echo "    WARNING: you requested file embedding but it has"
1639            echo "      been disabled since C code cannot be called"
1640            EMBED_SRC=
1641        fi
1642    fi
1643    rm -f genmake_t*
1644    
1645    printf "  Can we unlimit the stack size using $FC...  "
1646    check_HAVE_SETRLSTK
1647    if test "x$HAVE_SETRLSTK" != x ; then
1648        echo "yes"
1649    else
1650        echo "no"
1651    fi
1652    rm -f genmake_t*
1653    
1654    printf "  Can we register a signal handler using $FC...  "
1655    check_HAVE_SIGREG
1656    if test "x$HAVE_SIGREG" != x ; then
1657        echo "yes"
1658    else
1659        echo "no"
1660    fi
1661    rm -f genmake_t*
1662    
1663    printf "  Can we use stat() through C calls...  "
1664    check_HAVE_STAT
1665    if test "x$HAVE_STAT" != x ; then
1666        echo "yes"
1667    else
1668        echo "no"
1669  fi  fi
1670  rm -f genmake_t*  rm -f genmake_t*
1671    
# Line 1288  if test "x$HAVE_NETCDF" != x ; then Line 1676  if test "x$HAVE_NETCDF" != x ; then
1676  else  else
1677      echo "no"      echo "no"
1678  fi  fi
1679    DEFINES="$DEFINES $IGNORE_TIME"
1680    
1681    if test "x$EMBED_SRC" = xt ; then
1682        build_embed_encode
1683    fi
1684    if test "x$EMBED_SRC" = xt ; then
1685        ENABLE="$ENABLE embed_files"
1686    fi
1687    
1688    
1689  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1305  for d in $MODS ; do Line 1701  for d in $MODS ; do
1701  done  done
1702  echo  echo
1703    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1704  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1705      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1706  fi  fi
1707    
1708  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1709      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1710      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1711          EXEDIR=../exe          EXEDIR=../exe
1712      else      else
# Line 1333  if test ! -d ${TOOLSDIR} ; then Line 1726  if test ! -d ${TOOLSDIR} ; then
1726      exit 1      exit 1
1727  fi  fi
1728  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1729      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1730        RETVAL=$?
1731        if test "x${RETVAL}" = x0 ; then
1732            S64='$(TOOLSDIR)/set64bitConst.sh'
1733        else
1734            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1735            RETVAL=$?
1736            if test "x${RETVAL}" = x0 ; then
1737                S64='$(TOOLSDIR)/set64bitConst.csh'
1738            else
1739                cat <<EOF
1740    
1741    ERROR: neither of the two default scripts:
1742    
1743        ${TOOLSDIR}/set64bitConst.sh
1744        ${TOOLSDIR}/set64bitConst.csh
1745    
1746      are working so please check paths or specify (with \$S64) a
1747      working version of this script.
1748    
1749    EOF
1750                exit 1
1751            fi
1752        fi
1753  fi  fi
1754  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1755    
# Line 1478  done Line 1894  done
1894  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1895  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1896    
1897    #  Check availability of NetCDF and then either build the MNC template
1898    #  files or delete mnc from the list of available packages.
1899    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1900    RETVAL=$?
1901    if test "x$RETVAL" = x0 ; then
1902        if test "x$HAVE_NETCDF" != xt ; then
1903            cat <<EOF
1904    
1905    *********************************************************************
1906    WARNING: the "mnc" package was enabled but tests failed to compile
1907      NetCDF applications.  Please check that:
1908    
1909      1) NetCDF is correctly installed for this compiler and
1910      2) the LIBS variable (within the "optfile") specifies the correct
1911           NetCDF library to link against.
1912    
1913      Due to this failure, the "mnc" package is now DISABLED.
1914    *********************************************************************
1915    
1916    EOF
1917            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1918            DISABLE="$DISABLE mnc"
1919        else
1920            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1921            RETVAL=$?
1922            if test "x${RETVAL}" = x0 ; then
1923                rm -f make_mnc.errors
1924            else
1925                echo "Error: problem encountered while building source files in pkg/mnc:"
1926                cat make_mnc.errors 1>&2
1927                exit 1
1928            fi
1929        fi
1930    fi
1931    
1932  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1933  ck=  ck=
1934  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1562  for i in $PACKAGES ; do Line 2013  for i in $PACKAGES ; do
2013      fi      fi
2014  done  done
2015    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2016  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2017  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2018  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1608  for n in $names ; do Line 2032  for n in $names ; do
2032              fi              fi
2033          done          done
2034          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2035              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2036              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2037          fi          fi
2038      fi      fi
2039  done  done
2040  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2041  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2042      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2043      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2044  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2045    
# Line 1699  for i in $SOURCEDIRS ; do Line 2123  for i in $SOURCEDIRS ; do
2123          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2124      done      done
2125  done  done
2126    if test ! "x"$FS = "x.f" ; then
2127        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2128        mv -f ad_files_f ad_files
2129    fi
2130    
2131  echo  echo
2132  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1710  for i in $INCLUDEDIRS ; do Line 2137  for i in $INCLUDEDIRS ; do
2137      fi      fi
2138  done  done
2139    
2140    if test ! "x$DIVA" = x ; then
2141        echo "  Creating the pseudo-MPI include directory"
2142        INCLUDES="-I./mpi_headers $INCLUDES"
2143        rm -rf ./mpi_headers
2144        mkdir -p ./mpi_headers
2145    
2146        if test "x$MPIINCLUDEDIR" = x ; then
2147            if test "x$MPIHOME" = x ; then
2148                MPIHOME='/usr'
2149            fi
2150            MPIINCLUDEDIR='$MPIHOME/include'
2151        fi
2152        
2153        if test -r $MPIINCLUDEDIR/mpif.h ; then
2154            for i in $MPI_HEADER_FILES; do
2155                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2156            done
2157    
2158            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2159        else
2160            echo " We cannot create a copy of mpif.h!"
2161            exit -1
2162        fi
2163    fi
2164    
2165  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2166  rm -rf .links.tmp  rm -rf .links.tmp
2167  mkdir .links.tmp  mkdir .links.tmp
2168    touch .links.tmp/foo
2169    if test ! -r ".links.tmp/foo" ; then
2170        echo
2171        echo "ERROR : something is wrong with your directory permissions or"
2172        echo "   your user file-creation mask (\"umask\") since creating a"
2173        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2174        echo "   not working.  Please try setting your umask to something"
2175        echo "   sane such as:"
2176        echo
2177        echo "      umask 0002"
2178        echo
2179        echo "   and please verify that you have the proper permissions for"
2180        echo "   creating sub-directories and then reading files created"
2181        echo "   within them."
2182        echo
2183        exit 1
2184    fi
2185    rm -f .links.tmp/foo
2186  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2187  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2188  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 1728  for d in $alldirs ; do Line 2198  for d in $alldirs ; do
2198      for sf in $sfiles ; do      for sf in $sfiles ; do
2199          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2200              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2201                    ignore_f=f
2202                  case $d/$sf in                  case $d/$sf in
2203                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2204                            ignore_f=t
2205                          ;;                          ;;
2206                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2207                            ignore_f=t
2208                          ;;                          ;;
2209                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2210                            ignore_f=t
2211                          ;;                          ;;
2212                    *)                    ./BUILD_INFO.h)
2213                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
                         ;;  
                 esac  
                 extn=`echo $sf | $AWK -F '.' '{print $NF}'`  
                 case $extn in  
                     F)  
                         echo    " \\"  >> srclist.inc  
                         printf " $sf" >> srclist.inc  
                         ;;  
                     F90)  
                         echo    " \\"  >> f90srclist.inc  
                         printf " $sf" >> f90srclist.inc  
                         ;;  
                     c)  
                         echo    " \\"  >> csrclist.inc  
                         printf " $sf" >> csrclist.inc  
2214                          ;;                          ;;
2215                      h)                    ./EMBEDDED_FILES.h)
2216                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         printf " $sf" >> hlist.inc  
2217                          ;;                          ;;
2218                      flow)                    *)
2219                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2220                          printf " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2221                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2222                                ignore_f=t
2223                            else
2224                                touch .links.tmp/$sf
2225                                deplist="$deplist $sf"
2226                            fi
2227                          ;;                          ;;
2228                  esac                  esac
2229                    if test "x$ignore_f" = xf ; then
2230                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2231                        case $extn in
2232                            F)
2233                                echo    " \\"  >> srclist.inc
2234                                printf " $sf" >> srclist.inc
2235                                ;;
2236                            F90)
2237                                echo    " \\"  >> f90srclist.inc
2238                                printf " $sf" >> f90srclist.inc
2239                                ;;
2240                            c)
2241                                echo    " \\"  >> csrclist.inc
2242                                printf " $sf" >> csrclist.inc
2243                                ;;
2244                            h)
2245                                echo    " \\"  >> hlist.inc
2246                                printf " $sf" >> hlist.inc
2247                                ;;
2248                            flow)
2249                                echo    " \\"  >> ad_flow_files.inc
2250                                printf " $sf" >> ad_flow_files.inc
2251                                ;;
2252                        esac
2253                    fi
2254              fi              fi
2255          fi          fi
2256      done      done
# Line 1791  echo "#    $THISDATE" >> $MAKEFILE Line 2279  echo "#    $THISDATE" >> $MAKEFILE
2279  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2280  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2281  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2282  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2283    
2284  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2285  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1837  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2325  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2325  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2326    
2327  # These files are created by Makefile  # These files are created by Makefile
2328  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2329  EOF  EOF
2330    
2331  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2332        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2333    else
2334        echo "EMBEDDED_FILES = " >>$MAKEFILE
2335    fi
2336    
2337    #  Note: figure out some way to add Hyades JAM libraries here
2338  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2339  # Unix ln (link)  # Unix ln (link)
2340  LN = ${LN}  LN = ${LN}
# Line 1880  CFLAGS = ${CFLAGS} Line 2372  CFLAGS = ${CFLAGS}
2372  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2373  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2374  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2375  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2376  # Name of the Mekfile  # Name of the Mekfile
2377  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2378    
# Line 1893  cat hlist.inc         >> $MAKEFILE Line 2385  cat hlist.inc         >> $MAKEFILE
2385  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2386  echo >> $MAKEFILE  echo >> $MAKEFILE
2387  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2388  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2389  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2390  echo >> $MAKEFILE  echo >> $MAKEFILE
2391  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
# Line 1904  rm -f ad_flow_files.inc Line 2396  rm -f ad_flow_files.inc
2396  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2397    
2398  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2399  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2400          @echo Creating \$@ ...          @echo Creating \$@ ...
2401          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2402  depend:  depend:
# Line 1913  depend: Line 2405  depend:
2405          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2406          -rm -f makedepend.out          -rm -f makedepend.out
2407    
2408    lib: libmitgcmuv.a
2409    
2410    libmitgcmuv.a: \$(OBJFILES)
2411            ar rcv libmitgcmuv.a \$(OBJFILES)
2412    
2413  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2414    
2415  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
# Line 1933  CLEAN: Line 2430  CLEAN:
2430          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2431          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2432          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2433          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime
2434            -rm -rf mnc_test_*
2435    
2436  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2437  makefile:  makefile:
# Line 1941  makefile: Line 2439  makefile:
2439  cleanlinks:  cleanlinks:
2440          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2441    
2442  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2443  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2444          @echo Creating \$@ ...          @echo Creating \$@ ...
2445          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 1952  FC_NAMEMANGLE.h: Line 2450  FC_NAMEMANGLE.h:
2450          @echo Creating \$@ ...          @echo Creating \$@ ...
2451          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2452    
2453    BUILD_INFO.h:
2454            @echo Creating \$@ ...
2455    EOF
2456    
2457    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2458    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2459    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2460    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2461    
2462    if test "x$EMBED_SRC" = xt ; then
2463        cat >>$MAKEFILE <<EOF
2464    
2465    decode_files.o : EMBEDDED_FILES.h
2466    
2467    ##  \$(F77FILES)
2468    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2469            @echo Creating \$@ ...
2470            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2471            -rm -f all_fF.tar.gz
2472            -gzip all_fF.tar
2473    
2474    EMBEDDED_FILES.h : all_fF.tar.gz
2475            @echo Creating \$@ ...
2476            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2477    
2478    EOF
2479    fi
2480    
2481    cat >>$MAKEFILE <<EOF
2482    
2483  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2484    
2485  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2486    ## %.o : %.F
2487    
2488  .F.$FS:  .F.$FS:
2489          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1965  FC_NAMEMANGLE.h: Line 2494  FC_NAMEMANGLE.h:
2494  .$FS90.o:  .$FS90.o:
2495          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2496  .c.o:  .c.o:
2497          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2498    
2499  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2500  .F.p:  .F.p:
# Line 2010  cat >>$MAKEFILE <<EOF Line 2539  cat >>$MAKEFILE <<EOF
2539    
2540  # ... AD ...  # ... AD ...
2541  adall: ad_taf  adall: ad_taf
2542  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2543  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2544    
2545  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2546          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2547          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2548          -rm -f ad_config.template          -rm -f ad_config.template
2549          @make \$(F77FILES)          @make \$(F77FILES)
2550          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2551          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2552    
2553  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2554          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2555          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2556    
2557  adtafonly:  adtafonly:
2558          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2559          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2560    
2561  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2562          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2563    
2564  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2565          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2566          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2567    
2568  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2569          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2570    
2571    adonlyfwd:
2572            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2573    
2574    adtrick:
2575            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2576    
2577  # ... FTL ...  # ... FTL ...
2578  ftlall: ftl_taf  ftlall: ftl_taf
2579  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2580  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2581    
2582  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2583          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2584          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2585          -rm -f ftl_config.template          -rm -f ftl_config.template
2586          @make \$(F77FILES)          @make \$(F77FILES)
2587          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2588          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2589    
2590  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2591          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2592          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2593    
2594  ftltafonly:  ftltafonly:
2595          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2596          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2597    
2598  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2599          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2600    
2601  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2602          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2603          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2604    
2605  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2606          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2607    
2608    
2609  # ... SVD ...  # ... SVD ...
2610  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2611  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2612            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2613    svdall: svd_touch svd_taf
2614    
2615  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2616          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2617    
2618            @echo "--->>> Only COMPILE svd code! <<<---"
2619            @echo "--->>> Assumes you previously <<<---"
2620            @echo "--->>> did make svdtaf        <<<---"
2621    
2622    svd_touch:
2623            @echo "--->>> Only COMPILE svd code! <<<---"
2624            @echo "--->>> Assumes you previously <<<---"
2625            @echo "--->>> did make svdtaf        <<<---"
2626            touch ad_taf_output.$FS ftl_taf_output.$FS
2627            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2628            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2629            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2630            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2631            -rm -f ftl_config.template
2632    
2633  #=========================================  #=========================================
2634    

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