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revision 1.15 by edhill, Tue Oct 21 18:35:08 2003 UTC revision 1.88 by edhill, Tue Jul 20 19:43:45 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                rm -f ./genmake_cy_md
199                (
200                    cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
201                        &&  ./configure > /dev/null 2>&1  \
202                        &&  make > /dev/null 2>&1
203                    if test -x ./makedepend.exe ; then
204                        $LN ./makedepend.exe ./makedepend
205                    fi
206                    ./makedepend ifparser.c > /dev/null 2>&1  \
207                        &&  echo "true"
208                ) > ./genmake_cy_md
209                grep true ./genmake_cy_md > /dev/null 2>&1
210                RETVAL=$?
211                if test "x$RETVAL" = x0 ; then
212                    MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
213                else
214                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
215                fi
216                rm -f ./genmake_cy_md
217            fi
218        fi
219    }
220    
221    
222  # Guess possible config options for this host  # Guess possible config options for this host
223  find_possible_configs()  {  find_possible_configs()  {
224    
225      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
226      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
227      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
228        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
229        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
230        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
231        PLATFORM=$tmp3
232        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
233      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
234      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
235            
236      echo "test" > test      echo "test" > test
237      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 249  find_possible_configs()  {
249          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
250      fi      fi
251    
252        look_for_makedepend
253    
254      # look for possible fortran compilers      # look for possible fortran compilers
255      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
256      p_FC=      p_FC=
257      for c in $tmp ; do      for c in $tmp ; do
258          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 269  EOF
269              p_FC="$p_FC $c"              p_FC="$p_FC $c"
270          fi          fi
271      done      done
272        rm -f ./hello.f ./hello
273      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
274          cat 1>&2 <<EOF          cat 1>&2 <<EOF
275    
# Line 137  EOF Line 286  EOF
286          echo "   "$p_FC          echo "   "$p_FC
287          if test "x$FC" = x ; then          if test "x$FC" = x ; then
288              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
289                echo "  Setting FORTRAN compiler to: "$FC
290          fi          fi
291      fi      fi
292    
293      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
294          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
295          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
296              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
297              echo "  The options file:  $p_OF"          fi
298              echo "    appears to match so we'll use it."      fi
299              break  #    echo "  The options file:  $p_OF"
300          fi  #    echo "    appears to match so we'll use it."
301      done  #   for i in $p_FC ; do
302    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
303    #if test -r $p_OF ; then
304    #    OPTFILE=$p_OF
305    #    echo "  The options file:  $p_OF"
306    #    echo "    appears to match so we'll use it."
307    #    break
308    #fi
309    #   done
310      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
311          cat 1>&2 <<EOF          cat 1>&2 <<EOF
312    
# Line 204  get_pdepend_list()  { Line 362  get_pdepend_list()  {
362      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
363          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
364          > ./.pd_tmp          > ./.pd_tmp
365      source ./.pd_tmp      . ./.pd_tmp
366      rm -f ./.pd_tmp      rm -f ./.pd_tmp
367    
368      echo -n "PNAME = "${}      printf "PNAME = "${}
369  }  }
370    
371    
372  #  Explain usage  #  Explain usage
373  usage()  {  usage()  {
374      echo  cat <<EOF
375      echo "Usage: "$0" [OPTIONS]"  
376      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
377      echo    where [OPTIONS] can be:
378      echo "    -help | --help | -h | --h"  
379      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
380      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
381      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
382      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
383      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
384      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
385      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
386      echo "    -make NAME | -m NAME"  
387      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
388      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
389      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
390      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
391      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
392      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
393      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
394      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
395      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
396      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
397      echo "      -disable=NAME | --disable=NAME"  
398      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
399      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
400      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
401      echo "      -standarddirs=NAME | --standarddirs=NAME"  
402      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
403      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
404  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
405  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
406      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
407      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
408      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
409      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
410      echo "    -[no]jam | --[no]jam"  
411      echo      -makedepend NAME | -md NAME
412      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
413      echo            Use "NAME" for the MAKEDEPEND program.
414      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
415      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
416      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
417      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
418      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
419      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
420    
421        -mods NAME | --mods NAME | -mo NAME | --mo NAME
422          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
423              Here, "NAME" specifies a list of directories that are
424              used for additional source code.  Files found in the
425              "mods list" are given preference over files of the same
426              name found elsewhere.
427    
428        -disable NAME | --disable NAME
429          -disable=NAME | --disable=NAME
430              Here "NAME" specifies a list of packages that we don't
431              want to use.  If this violates package dependencies,
432              genamke will exit with an error message.
433    
434        -enable NAME | --enable NAME
435          -enable=NAME | --enable=NAME
436              Here "NAME" specifies a list of packages that we wish
437              to specifically enable.  If this violates package
438              dependencies, genamke will exit with an error message.
439    
440        -standarddirs NAME | --standarddirs NAME
441          -standarddirs=NAME | --standarddirs=NAME
442              Here, "NAME" specifies a list of directories to be
443              used as the "standard" code.
444    
445        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
446          -fc=NAME | --fc=NAME
447              Use "NAME" as the fortran compiler.  By default, genmake
448              will search for a working compiler by trying a list of
449              "usual suspects" such as g77, f77, etc.
450    
451        -[no]ieee | --[no]ieee
452              Do or don't use IEEE numerics.  Note that this option
453              *only* works if it is supported by the OPTFILE that
454              is being used.
455    
456        -mpi | --mpi
457              Include MPI header files and link to MPI libraries
458        -mpi=PATH | --mpi=PATH
459              Include MPI header files and link to MPI libraries using MPI_ROOT
460              set to PATH. i.e. Include files from $PATH/include, link to libraries
461              from $PATH/lib and use binaries from $PATH/bin.
462    
463        -bash NAME
464              Explicitly specify the Bourne or BASH shell to use
465    
466      While it is most often a single word, the "NAME" variables specified
467      above can in many cases be a space-delimited string such as:
468    
469        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
470        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
471        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
472    
473      which, depending upon your shell, may need to be single-quoted.
474    
475      For more detailed genmake documentation, please see:
476    
477        http://mitgcm.org/devel_HOWTO/
478    
479    EOF
480    
481      exit 1      exit 1
482  }  }
483    
484  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
485  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
486  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
487  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
488  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
489  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
490  #eh3 set LINK       = $FC  EOF
491  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
492  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
493  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
494  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
495  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
496  #eh3 set KFLAGS1    = (  )  
497  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
498  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
499  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
500  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
501  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
502        fi
503        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
504        RETVAL=$?
505        if test "x$RETVAL" != x0 ; then
506            FC_NAMEMANGLE=$default_nm
507            cat <<EOF>> genmake_warnings
508    
509    WARNING: The "nm" command failed.
510    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
511    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
512    EOF
513            return 1
514        fi
515        cat > genmake_tcomp.f <<EOF
516          subroutine tcall( string )
517          character*(*) string
518          call tsub( string )
519          end
520    EOF
521        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
522        RETVAL=$?
523        if test "x$RETVAL" != x0 ; then
524            FC_NAMEMANGLE=$default_nm
525            cat <<EOF>> genmake_warnings
526    
527    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
528    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
529    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
530    EOF
531            return 1
532        fi
533        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
534        RETVAL=$?
535        if test "x$RETVAL" != x0 ; then
536            FC_NAMEMANGLE=$default_nm
537            cat <<EOF>> genmake_warnings
538    
539    WARNING: The "nm" command failed.
540    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
541    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
542    EOF
543            return 1
544        fi
545    
546        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
547        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
548        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
549        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
550    
551        nmangle="X"
552        if test "x$c_a" != "x$f_a" ; then
553            comm="echo x$f_a | sed -e 's|x$c_a||'"
554            a=`eval $comm`
555            nmangle="$a ## $nmangle"
556        fi
557        if test "x$c_b" != "x$f_b" ; then
558            comm="echo x$f_b | sed -e 's|x$c_b||'"
559            b=`eval $comm`
560            nmangle="$nmangle ## $b"
561        fi
562    
563        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
564    
565        #  cleanup the testing files
566        rm -f genmake_tcomp.* genmake_test.*
567    }
568    
569    
570    check_HAVE_CLOC()  {
571        get_fortran_c_namemangling
572        cat <<EOF > genmake_tc_1.c
573    $FC_NAMEMANGLE
574    #include <stdio.h>
575    #include <stdlib.h>
576    #include <unistd.h>
577    #include <assert.h>
578    #include <sys/time.h>
579    void FC_NAMEMANGLE(cloc) ( double *curtim )
580    {
581     struct timeval tv1;
582     gettimeofday(&tv1 , (void *)NULL );
583     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
584     *curtim = *curtim/1.E6;
585    }
586    EOF
587        make genmake_tc_1.o >> genmake_tc.log 2>&1
588        RET_C=$?
589        cat <<EOF > genmake_tc_2.f
590          program hello
591          Real*8 wtime
592          external cloc
593          call cloc(wtime)
594          print *," HELLO WORLD", wtime
595          end program hello
596    EOF
597        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
598        RET_F=$?
599        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
600        RETVAL=$?
601        if test "x$RETVAL" = x0 ; then
602            HAVE_CLOC=t
603            DEFINES="$DEFINES -DHAVE_CLOC"
604        fi
605        rm -f genmake_tc*
606    }
607    
608    
609    check_netcdf_libs()  {
610        cat <<EOF > genmake_tnc.for
611          program fgennc
612    #include "netcdf.inc"
613          integer iret, ncid, xid
614          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
615          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
616          iret = nf_def_dim(ncid, 'X', 11, xid)
617          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
618          iret = nf_close(ncid)
619          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
620          end
621    EOF
622        $CPP genmake_tnc.for > genmake_tnc.f  \
623            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
624        RET_COMPILE=$?
625        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
626        RETVAL=$?
627        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
628            HAVE_NETCDF=t
629        else
630            # try again with "-lnetcdf" added to the libs
631            $CPP genmake_tnc.for > genmake_tnc.f  \
632                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
633                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
634            RET_COMPILE=$?
635            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
636            RETVAL=$?
637            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
638                LIBS="$LIBS -lnetcdf"
639                HAVE_NETCDF=t
640            else
641                cat genmake_tnc.log >> genmake_warnings
642            fi
643        fi
644        rm -f genmake_tnc*
645    }
646    
647    
648    
649    ###############################################################################
650    #   Sequential part of script starts here
651    ###############################################################################
652    
653  #  Set defaults here  #  Set defaults here
654  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  LN= Line 658  LN=
658  S64=  S64=
659  KPP=  KPP=
660  FC=  FC=
661    CPP=
662  LINK=  LINK=
663  DEFINES="-DWORDLENGTH=4"  DEFINES=
664  PACKAGES=  PACKAGES=
665  ENABLE=  ENABLE=
666  DISABLE=  DISABLE=
# Line 306  FOPTIM= Line 676  FOPTIM=
676  CFLAGS=  CFLAGS=
677  KFLAGS1=  KFLAGS1=
678  KFLAGS2=  KFLAGS2=
679    #LDADD=
680  LIBS=  LIBS=
681  KPPFILES=  KPPFILES=
682  NOOPTFILES=  NOOPTFILES=
683  NOOPTFLAGS=  NOOPTFLAGS=
684    MPI=
685    MPIPATH=
686    
687    # DEFINES checked by test compilation
688    HAVE_SYSTEM=
689    HAVE_FDATE=
690    FC_NAMEMANGLE=
691    HAVE_CLOC=
692    HAVE_NETCDF=
693    HAVE_ETIME=
694    
695  MODS=  MODS=
696  TOOLSDIR=  TOOLSDIR=
697  SOURCEDIRS=  SOURCEDIRS=
698  INCLUDEDIRS=  INCLUDEDIRS=
699  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
700    
701    G2ARGS=
702    BASH=
703  PWD=`pwd`  PWD=`pwd`
704  MAKE=make  MAKE=make
705  AWK=awk  AWK=awk
# Line 332  IEEE= Line 715  IEEE=
715  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
716      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
717  fi  fi
718    FS=
719    FS90=
720    
721  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
722  AD_OPTFILE=  AD_OPTFILE=
723    TAF=
724    AD_TAF_FLAGS=
725    FTL_TAF_FLAGS=
726    SVD_TAF_FLAGS=
727    TAF_EXTRA=
728    TAMC=
729    AD_TAMC_FLAGS=
730    FTL_TAF_FLAGS=
731    SVD_TAMC_FLAGS=
732    TAMC_EXTRA=
733    
734    
735  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
736  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
737  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
738    
739  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
740  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
741  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
742  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
743  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
744    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
745    
746  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
747  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
748  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
749  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA"
750    
751  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
752    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
753    
754    cat <<EOF
755    
756    GENMAKE :
757    
758    A program for GENerating MAKEfiles for the MITgcm project.  For a
759    quick list of options, use "genmake -h" or for more detail see:
760    
761      http://mitgcm.org/devel_HOWTO/
762    
763    EOF
764    
 echo  
765  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
766  gm_local="genmake_local"  gm_local="genmake_local"
767  for i in . $MODS ; do  for i in . $MODS ; do
768      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
769          source $i/$gm_local          . $i/$gm_local
770          break          break
771      fi      fi
772  done  done
773  echo -n "  getting local config information:  "  printf "  getting local config information:  "
774  if test -e $gm_local ; then  if test -f $gm_local ; then
775      echo "using $gm_local"      echo "using $gm_local"
776      source $gm_local      . $gm_local
777      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
778      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
779  else  else
# Line 385  fi Line 792  fi
792  #done  #done
793  #parse_options  #parse_options
794  ac_prev=  ac_prev=
795  for ac_option ; do  for ac_option in $@ ; do
796    
797        G2ARGS="$G2ARGS \"$ac_option\""
798    
799      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
800      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 408  for ac_option ; do Line 817  for ac_option ; do
817          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
818              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
819                    
820          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
821              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
822          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
823              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 428  for ac_option ; do Line 837  for ac_option ; do
837          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
838              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
839                    
840            -bash | --bash)
841                ac_prev=BASH ;;
842            -bash=* | --bash=*)
843                BASH=$ac_optarg ;;
844            
845            -makedepend | --makedepend | -md | --md)
846                ac_prev=MAKEDEPEND ;;
847            -makedepend=* | --makedepend=* | -md=* | --md=*)
848                MAKEDEPEND=$ac_optarg ;;
849            
850          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
851              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
852          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
853              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
854                    
855          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
856              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
857          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
858              PLATFORM=$ac_optarg ;;              echo
859                usage
860                ;;
861                    
862          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
863              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 463  for ac_option ; do Line 884  for ac_option ; do
884          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
885              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
886    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
887  #           -cpp | --cpp)  #           -cpp | --cpp)
888  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
889  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 478  for ac_option ; do Line 894  for ac_option ; do
894          -fc=* | --fc=*)          -fc=* | --fc=*)
895              FC=$ac_optarg ;;              FC=$ac_optarg ;;
896                    
897            -fs | --fs)
898                ac_prev=FS ;;
899            -fs=* | --fs=*)
900                FS=$ac_optarg ;;
901            
902            -fs90 | --fs90)
903                ac_prev=FS90 ;;
904            -fs90=* | --fs90=*)
905                FS90=$ac_optarg ;;
906            
907          -ieee | --ieee)          -ieee | --ieee)
908              IEEE=true ;;              IEEE=true ;;
909          -noieee | --noieee)          -noieee | --noieee)
910              IEEE= ;;              IEEE= ;;
911            
912          -mpi | --mpi)          -mpi | --mpi)
913              MPI=true ;;              MPI=true ;;
914          -nompi | --nompi)          -mpi=* | --mpi=*)
915              MPI= ;;              MPIPATH=$ac_optarg
916                MPI=true ;;
917                    
918          -jam | --jam)  #       -jam | --jam)
919              JAM=1 ;;  #           JAM=1 ;;
920          -nojam | --nojam)  #       -nojam | --nojam)
921              JAM=0 ;;  #           JAM=0 ;;
922                    
923          -ds | --ds)          -ds | --ds)
924              DUMPSTATE=t ;;              DUMPSTATE=t ;;
925                    
926            -taf_extra | --taf_extra)
927                ac_prev=TAF_EXTRA ;;
928            -taf_extra=* | --taf_extra=*)
929                TAF_EXTRA=$ac_optarg ;;
930    
931            -tamc_extra | --tamc_extra)
932                ac_prev=TAMC_EXTRA ;;
933            -tamc_extra=* | --tamc_extra=*)
934                TAMC_EXTRA=$ac_optarg ;;
935    
936          -*)          -*)
937              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
938              usage              usage
# Line 523  if test -f ./.genmakerc ; then Line 960  if test -f ./.genmakerc ; then
960  fi  fi
961    
962  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
963      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
964        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
965          ROOTDIR=".."          ROOTDIR=".."
966      else      else
967          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
968              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
969                  ROOTDIR=$d                  ROOTDIR=$d
970                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
971                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
972                  break                  break
973              fi              fi
# Line 560  fi Line 998  fi
998  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
999      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1000          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1001          source "$OPTFILE"          . "$OPTFILE"
1002          RETVAL=$?          RETVAL=$?
1003          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1004              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1005              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1006              exit 1              exit 1
1007          fi          fi
# Line 576  if test "x$OPTFILE" != xNONE ; then Line 1014  if test "x$OPTFILE" != xNONE ; then
1014      fi      fi
1015  fi  fi
1016    
1017    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1018    # check_for_broken_Ff
1019    
1020  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1021  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1022      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 587  fi Line 1028  fi
1028  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1029      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1030          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1031          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1032          RETVAL=$?          RETVAL=$?
1033          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1034              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1035              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1036              exit 1              exit 1
1037          fi          fi
# Line 603  if test "x${AD_OPTFILE}" != xNONE ; then Line 1044  if test "x${AD_OPTFILE}" != xNONE ; then
1044      fi      fi
1045  fi  fi
1046    
1047  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1048  #  and abort!  #  either set defaults or complain and abort!
1049    if test ! "x$BASH" = x ; then
1050        # add a trailing space so that it works within the Makefile syntax (see below)
1051        BASH="$BASH "
1052    fi
1053  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1054      cat <<EOF 1>&2      cat <<EOF 1>&2
1055    
# Line 618  fi Line 1063  fi
1063  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1064      LINK=$FC      LINK=$FC
1065  fi  fi
1066    if test "x$MAKE" = x ; then
1067        MAKE="make"
1068    fi
1069  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1070      CPP="cpp"      CPP=cpp
1071  fi  fi
1072    #EH3 === UGLY ===
1073    #  The following is an ugly little hack to check for $CPP in /lib/ and
1074    #  it should eventually be replaced with a more general function that
1075    #  searches a combo of the user's path and a list of "usual suspects"
1076    #  to find the correct location for binaries such as $CPP.
1077    for i in " " "/lib/" ; do
1078        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1079    done
1080    #EH3 === UGLY ===
1081  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1082  RETVAL=$?  RETVAL=$?
1083  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 630  Error: C pre-processor "$CPP" failed the Line 1087  Error: C pre-processor "$CPP" failed the
1087    
1088    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1089    2) the "./genmake_local" file    2) the "./genmake_local" file
1090      3) with the CPP environment variable
1091    
1092  EOF  EOF
1093      exit 1      exit 1
1094  else  else
1095      rm -f test_cpp      rm -f test_cpp
1096  fi  fi
1097  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1098      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1099        LN="ln -s"
1100  fi  fi
1101    echo "test" > genmake_test_ln
1102    $LN genmake_test_ln genmake_tlink
1103    RETVAL=$?
1104    if test "x$RETVAL" != x0 ; then
1105        cat <<EOF 1>&2
1106    
1107    Error: The command "ln -s" failed -- please specify a working soft-link
1108      command in the optfile.
1109    
1110    EOF
1111        exit 1
1112    fi
1113    rm -f genmake_test_ln genmake_tlink
1114    
1115    #  Check for broken *.F/*.f handling and fix if possible
1116    check_for_broken_Ff
1117    
1118    if test ! "x$MPI" = x ; then
1119          echo "  Turning on MPI cpp macros"
1120          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1121    fi
1122    
1123    printf "\n===  Checking system libraries  ===\n"
1124    printf "  Do we have the system() command using $FC...  "
1125    cat > genmake_tcomp.f <<EOF
1126          program hello
1127          call system('echo hi')
1128          end
1129    EOF
1130    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1131    RETVAL=$?
1132    if test "x$RETVAL" = x0 ; then
1133        HAVE_SYSTEM=t
1134        DEFINES="$DEFINES -DHAVE_SYSTEM"
1135        echo "yes"
1136    else
1137        HAVE_SYSTEM=
1138        echo "no"
1139    fi
1140    rm -f genmake_tcomp*
1141    
1142    printf "  Do we have the fdate() command using $FC...  "
1143    cat > genmake_tcomp.f <<EOF
1144          program hello
1145          CHARACTER(128) string
1146          string = ' '
1147          call fdate( string )
1148          print *, string
1149          end
1150    EOF
1151    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1152    RETVAL=$?
1153    if test "x$RETVAL" = x0 ; then
1154        HAVE_FDATE=t
1155        DEFINES="$DEFINES -DHAVE_FDATE"
1156        echo "yes"
1157    else
1158        HAVE_FDATE=
1159        echo "no"
1160    fi
1161    rm -f genmake_tcomp*
1162    
1163    printf "  Do we have the etime() command using $FC...  "
1164    cat > genmake_tcomp.f <<EOF
1165          program hello
1166          REAL*4 ACTUAL, TARRAY(2)
1167          EXTERNAL ETIME
1168          REAL*4 ETIME
1169          actual = etime( tarray )
1170          print *, tarray
1171          end
1172    EOF
1173    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1174    RETVAL=$?
1175    if test "x$RETVAL" = x0 ; then
1176        HAVE_ETIME=t
1177        DEFINES="$DEFINES -DHAVE_ETIME"
1178        echo "yes"
1179    else
1180        HAVE_ETIME=
1181        echo "no"
1182    fi
1183    rm -f genmake_tcomp*
1184    
1185    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1186    check_HAVE_CLOC
1187    if test "x$HAVE_CLOC" != x ; then
1188        echo "yes"
1189    else
1190        echo "no"
1191    fi
1192    rm -f genmake_t*
1193    
1194    printf "  Can we create NetCDF-enabled binaries...  "
1195    check_netcdf_libs
1196    if test "x$HAVE_NETCDF" != x ; then
1197        echo "yes"
1198    else
1199        echo "no"
1200    fi
1201    
1202    
1203  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1204  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1205  for d in $MODS ; do  for d in $MODS ; do
1206      if test ! -d $d ; then      if test ! -d $d ; then
1207          echo          echo
1208          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1209          exit 1          exit 1
1210      else      else
1211          echo -n " $d"          printf " $d"
1212          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1213          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1214      fi      fi
# Line 663  if test "x${PLATFORM}" = x ; then Line 1223  if test "x${PLATFORM}" = x ; then
1223  fi  fi
1224    
1225  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1226      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1227        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1228          EXEDIR=../exe          EXEDIR=../exe
1229      else      else
1230          EXEDIR=.          EXEDIR=.
# Line 678  if test "x${TOOLSDIR}" = x ; then Line 1239  if test "x${TOOLSDIR}" = x ; then
1239      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1240  fi  fi
1241  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1242      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1243      exit 1      exit 1
1244  fi  fi
1245  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1246      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1247  fi  fi
1248    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1249    
1250  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1251    
# Line 692  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1254  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1254  #  they appear as regular source code  #  they appear as regular source code
1255  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1256      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1257      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1258      RETVAL=$?      RETVAL=$?
1259      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1260          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1261      else      else
1262          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1263          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1264          exit 1          exit 1
1265      fi      fi
1266  fi  fi
1267    
1268    #same for exch2
1269    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1270        echo "  Making source files in exch2 from  templates"
1271        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1272        RETVAL=$?
1273        if test "x${RETVAL}" = x0 ; then
1274            rm -f make_exch2.errors
1275        else
1276            echo "Error: problem encountered while building source files in exch2:"
1277            cat make_exch2.errors 1>&2
1278            exit 1
1279        fi
1280    fi
1281    
1282  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1283  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1284      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 729  if test ! "x${RETVAL}" = x0 ; then Line 1305  if test ! "x${RETVAL}" = x0 ; then
1305      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1306      exit 1      exit 1
1307  fi  fi
1308  source ./.pd_tmp  . ./.pd_tmp
1309  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1310    
1311  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1312  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1313  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1314  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1315  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1316      for i in "." $MODS ; do      for i in "." $MODS ; do
1317          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 748  if test "x${PDEFAULT}" = x ; then Line 1324  if test "x${PDEFAULT}" = x ; then
1324      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1325  fi  fi
1326  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1327      echo "default packages file disabled"      echo "    default packages file disabled"
1328  else  else
1329      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1330          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1331      else      else
1332          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1333          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1334          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1335          RETVAL=$?          RETVAL=$?
1336          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1337              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1338              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1339              exit 1              exit 1
1340          fi          fi
# Line 767  else Line 1342  else
1342              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1343          done          done
1344          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1345          expand_pkg_groups          RET=1
1346            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1347          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1348      fi      fi
1349  fi  fi
1350    
1351  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1352    for i in $PACKAGES ; do
1353        echo $i >> ./.tmp_pack
1354    done
1355    for i in `grep  "-" ./.tmp_pack` ; do
1356        j=`echo $i | sed 's/[-]//'`
1357        DISABLE="$DISABLE $j"
1358    done
1359  pack=  pack=
1360  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1361      addit="t"      addit="t"
# Line 789  PACKAGES="$pack" Line 1372  PACKAGES="$pack"
1372  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1373  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1374  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1375    # Test if each explicitly referenced package exists
1376  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1377      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1378        if test ! -d "$ROOTDIR/pkg/$j" ; then
1379          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1380          exit 1          exit 1
1381      fi      fi
1382      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1383  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1384  PACKAGES=  PACKAGES=
1385  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1386      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1387  done  done
1388    rm -f ./.tmp_pack
1389  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1390    
1391  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 868  while test "x$ck" != xtt ; do Line 1452  while test "x$ck" != xtt ; do
1452              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1453              exit 1              exit 1
1454          fi          fi
1455          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1456            #i=$(( $i + 1 ))
1457      done      done
1458      ck=$ck"t"      ck=$ck"t"
1459  done  done
# Line 887  for i in $PACKAGES ; do Line 1472  for i in $PACKAGES ; do
1472      fi      fi
1473  done  done
1474    
1475  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1476  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1477  #  RETVAL=$?
1478  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1479  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1480  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1481  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1482  # i=0          rm -f make_mnc.errors
1483  # while test $i -lt "${#pkrm[@]}" ; do      else
1484  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1485  #     RETVAL=$?          cat make_mnc.errors 1>&2
1486  #     if test "x$RETVAL" = x1 ; then          exit 1
1487  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1488  #       echo -n " ${pkdef[$i]}"      if test "x$HAVE_NETCDF" != xt ; then
1489  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 # Create a list of #define and #undef to enable/disable packages  
 PACKAGES_DOT_H=PACKAGES_CONFIG.h  
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1490    
1491  #ifndef PACKAGES_H  WARNING: the "mnc" package has been enabled but tests failed to
1492  #define PACKAGES_H    compile and/or execute NetCDF applications.  Please check that:
1493    
1494  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1495      2) the LIBS variable (within the 'optfile") specifies the correct
1496           NetCDF library to link against.
1497      
1498  EOF  EOF
1499        fi
1500    fi
1501    
1502    # Create a list of #define and #undef to enable/disable packages
1503    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1504  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1505  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1506  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1507  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1508  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1509  all_pack=  all_pack=
1510    DISABLED_PACKAGES=
1511  for n in $names ; do  for n in $names ; do
1512      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1513          has_pack="f"          has_pack="f"
# Line 937  for n in $names ; do Line 1519  for n in $names ; do
1519          done          done
1520          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1521              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1522              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1523          fi          fi
1524      fi      fi
1525  done  done
1526  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1527  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1528      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1529      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1530  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1531    
1532  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1533      case $i in      case $i in
1534          aim_v23)          aim_v23)
1535              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1536              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1537              ;;              ;;
1538      esac      esac
1539  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1540    
1541  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1542    
1543  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1544  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1545  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1546      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1547  fi  fi
1548  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1549      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1550      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1551          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1552          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1553          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1554      else              exit 1
1555          SOURCEDIRS="$SOURCEDIRS $adr"          else
1556      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1557      adr="$ROOTDIR/$d/inc"          fi
1558      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1559          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1560          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1561          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1562      else              exit 1
1563          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1564      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1565  done          fi
1566        done
1567    fi
1568    
1569  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1570  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1571  CPP_OPTIONS=  CPP_OPTIONS=
1572    CPP_EEOPTIONS=
1573  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1574    names=`ls -1 "$ROOTDIR/pkg"`
1575  for i in $spaths ; do  for i in $spaths ; do
1576      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1577      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1578          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1579          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1580          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1581            for n in $names ; do
1582                test_for_package_in_cpp_options $CPP_OPTIONS $n
1583            done
1584        fi
1585        try="$i/CPP_EEOPTIONS.h"
1586        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1587            echo "    found CPP_EEOPTIONS=\"$try\""
1588            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1589    #**** not yet enabled ****
1590    #        test_for_mpi_in_cpp_eeoptions $try
1591    #**** not yet enabled ****
1592            CPP_EEOPTIONS="$try"
1593      fi      fi
1594  done  done
1595  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1596      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1597      exit 1      exit 1
1598  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1599    
1600  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1601  #  compiler.  #  compiler.
# Line 1056  for i in $SOURCEDIRS ; do Line 1610  for i in $SOURCEDIRS ; do
1610      done      done
1611  done  done
1612    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1613    
1614  echo  echo
1615  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1616  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1617  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1618      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1619          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1620      fi      fi
1621  done  done
# Line 1084  rm -rf .links.tmp Line 1625  rm -rf .links.tmp
1625  mkdir .links.tmp  mkdir .links.tmp
1626  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1627  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1628  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1629  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1630  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1631  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1632  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1633  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1634  for d in $alldirs ; do  for d in $alldirs ; do
1635      deplist=      deplist=
# Line 1097  for d in $alldirs ; do Line 1638  for d in $alldirs ; do
1638      for sf in $sfiles ; do      for sf in $sfiles ; do
1639          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1640              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1641                    case $d/$sf in
1642                      ./$PACKAGES_DOT_H)
1643                            ;;
1644                      ./AD_CONFIG.h)
1645                            ;;
1646                      ./FC_NAMEMANGLE.h)
1647                            ;;
1648                      *)
1649                            touch .links.tmp/$sf
1650                            deplist="$deplist $sf"
1651                            ;;
1652                    esac
1653                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1654                  case $extn in                  case $extn in
1655                      F)                      F)
1656                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1657                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1658                          ;;                          ;;
1659                      F90)                      F90)
1660                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1661                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1662                          ;;                          ;;
1663                      c)                      c)
1664                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1665                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1666                          ;;                          ;;
1667                      h)                      h)
1668                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1669                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1670                          ;;                          ;;
1671                      flow)                      flow)
1672                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1673                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1674                          ;;                          ;;
1675                  esac                  esac
1676              fi              fi
# Line 1139  echo "" >> f90srclist.inc Line 1690  echo "" >> f90srclist.inc
1690  echo "" >> hlist.inc  echo "" >> hlist.inc
1691  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1692    
1693  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1694      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1695  fi  fi
1696  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1148  echo "#    $MACHINE" >> $MAKEFILE Line 1699  echo "#    $MACHINE" >> $MAKEFILE
1699  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1700  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1701  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1702  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1703  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1704  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1705    
1706    EXE_AD=$EXECUTABLE"_ad"
1707    EXE_FTL=$EXECUTABLE"_ftl"
1708    EXE_SVD=$EXECUTABLE"_svd"
1709    
1710  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1711    #
1712    # OPTFILE="$OPTFILE"
1713  #  #
1714  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1715  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1181  TOOLSDIR    = ${TOOLSDIR} Line 1739  TOOLSDIR    = ${TOOLSDIR}
1739    
1740  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
1741  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1742    EXE_AD      = ${EXE_AD}
1743    EXE_FTL     = ${EXE_FTL}
1744    EXE_SVD     = ${EXE_SVD}
1745    
1746    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1747    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1748    
1749    # These files are created by Makefile
1750    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1751    
1752  EOF  EOF
1753    
# Line 1200  FC = ${FC} Line 1767  FC = ${FC}
1767  # Fortran compiler  # Fortran compiler
1768  F90C = ${F90C}  F90C = ${F90C}
1769  # Link editor  # Link editor
1770  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1771    
1772  # Defines for CPP  # Defines for CPP
1773  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1232  cat csrclist.inc      >> $MAKEFILE Line 1799  cat csrclist.inc      >> $MAKEFILE
1799  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1800  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1801  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1802  echo               >> $MAKEFILE  echo >> $MAKEFILE
1803  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1804  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1805  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1806    echo >> $MAKEFILE
1807    echo '.SUFFIXES:' >> $MAKEFILE
1808    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1809  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1810  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1811    
1812  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1813    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1814  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1815  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1816            @echo Creating \$@ ...
1817          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1818  depend:  depend:
1819          @make links          @make links
1820          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1821          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1822            -rm -f makedepend.out
1823    
1824  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1825    
1826  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1827    
# Line 1262  output.txt: \$(EXECUTABLE) Line 1830  output.txt: \$(EXECUTABLE)
1830          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1831    
1832  clean:  clean:
1833          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1834  Clean:  Clean:
1835          @make clean          @make clean
1836          @make cleanlinks          @make cleanlinks
1837          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
1838            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1839  CLEAN:  CLEAN:
1840          @make Clean          @make Clean
1841          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1842          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1843          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1844          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1845    
1846  Makefile: makefile  #eh3 Makefile: makefile
1847  makefile:  makefile:
1848          ${0} $@          $THIS_SCRIPT $G2ARGS
1849  cleanlinks:  cleanlinks:
1850          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1851    
1852  # The normal chain of rules is (  .F - .f - .o  )  # Special targets ($SPECIAL_FILES) which are create by make
1853  .F.f:  ${PACKAGES_DOT_H}:
1854            @echo Creating \$@ ...
1855            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1856    AD_CONFIG.h:
1857            @echo Creating \$@ ...
1858            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1859    FC_NAMEMANGLE.h:
1860            @echo Creating \$@ ...
1861            echo "$FC_NAMEMANGLE" > \$@
1862    
1863    # The normal chain of rules is (  .F - .$FS - .o  )
1864    
1865    %.o : %.F
1866    
1867    .F.$FS:
1868          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1869  .f.o:  .$FS.o:
1870          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1871  .F90.f90:  .F90.$FS90:
1872          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1873  .f90.o:  .$FS90.o:
1874          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1875  .c.o:  .c.o:
1876          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1877    
1878  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
1879  .F.p:  .F.p:
1880          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1881  .p.f:  .p.$FS:
1882          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1883    
1884  #=========================================  #=========================================
# Line 1304  cleanlinks: Line 1887  cleanlinks:
1887  TAMC           = ${TAMC}  TAMC           = ${TAMC}
1888  TAF            = ${TAF}  TAF            = ${TAF}
1889    
1890    TAF_EXTRA      = ${TAF_EXTRA}
1891    TAMC_EXTRA     = ${TAMC_EXTRA}
1892    
1893  EOF  EOF
1894    
1895  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1319  done Line 1905  done
1905    
1906  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1907  echo >> $MAKEFILE  echo >> $MAKEFILE
1908  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1909  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1910  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1911      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1912      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1913  done  done
1914  echo >> $MAKEFILE  echo >> $MAKEFILE
1915    rm -f ad_files
1916    
1917  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1918    
1919    # ... AD ...
1920  ad_input_code.f: \$(F77FILES)  adall: ad_taf
1921    adtaf: ad_taf_output.f
1922    adtamc: ad_tamc_output.f
1923    
1924    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1925            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1926            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1927            -rm -f ad_config.template
1928            @make \$(F77FILES)
1929          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1930          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1931    
   
1932  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1933          \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1934          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1935    
1936  ad_taf: ad_taf_output.o \$(OBJFILES)  adtafonly:
1937          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1938            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1939    
1940    ad_taf: ad_taf_output.o \$(OBJFILES)
1941            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1942    
1943  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1944          \$(TAMC) \$(AD_TAMC_FLAGS) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1945          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1946    
1947  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1948          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1949    
1950    
1951  flt_taf_output.f: ad_input_code.f  # ... FTL ...
1952          \$(TAF) \$(FTL_TAF_FLAGS) ad_input_code.f  ftlall: ftl_taf
1953          cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  ftltaf: ftl_taf_output.f
1954    ftltamc: ftl_tamc_output.f
1955    
1956    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1957            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1958            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1959            -rm -f ftl_config.template
1960            @make \$(F77FILES)
1961            @make \$(AD_FLOW_FILES)
1962            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1963    
1964    ftl_taf_output.f: ftl_input_code.f
1965            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1966            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1967    
1968  flt_taf: flt_taf_output.o \$(OBJFILES)  ftltafonly:
1969          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1970            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1971    
1972    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1973            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1974    
1975    ftl_tamc_output.f: ftl_input_code.f
1976            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1977            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1978    
1979    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1980            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1981    
1982    
1983    # ... SVD ...
1984    svdtaf: ad_taf_output.f ftl_taf_output.f
1985    svdall: svd_taf
1986    
1987    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1988            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1989    
1990    
1991  #=========================================  #=========================================
# Line 1375  for i in $KPPFILES ; do Line 2003  for i in $KPPFILES ; do
2003      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2004          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2005      fi      fi
2006      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2007  done  done
2008    
2009  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1385  for i in $NOOPTFILES ; do Line 2013  for i in $NOOPTFILES ; do
2013      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2014          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2015      fi      fi
2016      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2017      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2018  done  done
2019    
# Line 1398  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2026  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2026    
2027  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2028    
2029    # Create special header files
2030    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2031    if test ! -f $PACKAGES_DOT_H ; then
2032        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2033    else
2034        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2035        RETVAL=$?
2036        if test "x$RETVAL" = x0 ; then
2037            rm -f $PACKAGES_DOT_H".tmp"
2038        else
2039            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2040            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2041        fi
2042    fi
2043    if test ! -f AD_CONFIG.h ; then
2044        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2045    fi
2046    
2047    
2048  #  Write the "state" for future records  #  Write the "state" for future records
2049  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2050      echo -n "" > genmake_state      printf "" > genmake_state
2051      for i in $gm_state ; do      for i in $gm_state ; do
2052          t1="t2=\$$i"          t1="t2=\$$i"
2053          eval $t1          eval $t1

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