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revision 1.83 by adcroft, Tue Jul 6 18:06:49 2004 UTC revision 1.164 by ce107, Tue Jul 31 22:27:01 2007 UTC
# Line 1  Line 1 
1  #! /usr/bin/env sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 39  test_for_string_in_file() { Line 47  test_for_string_in_file() {
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 122  EOF Line 130  EOF
130        stop        stop
131        end        end
132  EOF  EOF
133      test -e Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
135  .SUFFIXES:  .SUFFIXES:
136  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
137          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
138            $LN \$< \$@
139  EOF  EOF
140      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141      RETVAL=$?      RETVAL=$?
142      if test "x$RETVAL" != x0 -o ! -e "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143          if test "x$FS" = x ; then          if test "x$FS" = x ; then
144              FS='for'              FS='for'
145              FS90='fr9'              FS90='fr9'
# Line 148  EOF Line 156  EOF
156              return              return
157          fi          fi
158      fi      fi
159      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
160      test -e Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162      #  If we make it here, use the extensions      #  If we make it here, use the extensions
163      FS=$tfs      FS=$tfs
# Line 158  EOF Line 166  EOF
166  }  }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 188  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      #  The "original" makedepend is part of the Imake system that is      look_for_makedepend
325      #  most often distributed with XFree86 or with an XFree86 source  
326      #  package.  As a result, many machines (eg. generic Linux) do not      #================================================================
327      #  have a system-default "makedepend" available.  For those      #  look for possible C compilers
328      #  systems, we have two fall-back options:      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      #      p_CC=
330      #    1) a makedepend implementation shipped with the cyrus-imapd      for c in $tmp ; do
331      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/          rm -f ./genmake_hello.c  ./genmake_hello
332      #          cat >> genmake_hello.c << EOF
333      #    2) a known-buggy xmakedpend shell script  #include <stdio.h>
334      #  int main(int argc, char **argv) {
335      #  So the choices are, in order:    printf("Hello!\n");
336      #    return 0;
337      #    1) use the user-specified program  }
     #    2) use a system-wide default  
     #    3) locally build and use the cyrus implementation  
     #    4) fall back to the buggy local xmakedpend script  
     #  
     if test "x${MAKEDEPEND}" = x ; then  
       which makedepend > /dev/null 2>&1  
       RV0=$?  
       cat <<EOF >> genmake_tc.f  
       program test  
       write(*,*) 'test'  
       stop  
       end  
338  EOF  EOF
339        makedepend genmake_tc.f > /dev/null 2>&1          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340        RV1=$?          RETVAL=$?
341        if test ! "x${RV0}${RV1}" = x00 ; then          if test "x${RETVAL}" = x0 ; then
342           echo "    a system-default makedepend was not found."              p_CC="$p_CC $c"
343            fi
344           #  Try to build the cyrus impl      done
345           rm -f ./genmake_cy_md      rm -f ./genmake_hello.c ./genmake_hello
346           (      if test "x${p_CC}" = x ; then
347               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cat 1>&2 <<EOF
348                   &&  ./configure > /dev/null 2>&1  \  
349                   &&  make > /dev/null 2>&1  Error: No C compilers were found in your path.  Please specify one using:
350               if test -x ./makedepend.exe ; then  
351                   $LN ./makedepend.exe ./makedepend      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352               fi      2) the CC or MITGCM_CC environment variables.
353               ./makedepend ifparser.c > /dev/null 2>&1  \  
354                   &&  echo "true"  EOF
355           ) > ./genmake_cy_md          exit 1
356           grep true ./genmake_cy_md > /dev/null 2>&1      else
357           RETVAL=$?          echo "  The possible C compilers found in your path are:"
358           if test "x$RETVAL" = x0 ; then          echo "   "$p_CC
359               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          if test "x$CC" = x ; then
360           else              CC=`echo $p_CC | $AWK '{print $1}'`
361               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'              echo "  Setting C compiler to: "$CC
362           fi          fi
          rm -f ./genmake_cy_md  
       fi  
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 269  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 440  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
609      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
610            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
611            set to PATH. i.e. Include files from $PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from $PATH/lib and use binaries from $PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619      -bash NAME      -bash NAME
620            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
# Line 475  EOF Line 639  EOF
639    
640  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
641  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
642    
643        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644        if test ! "x$FC_NAMEMANGLE" = x ; then
645            return 0
646        fi
647    
648      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649            
650      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 492  WARNING: Please contact <MITgcm-support@ Line 662  WARNING: Please contact <MITgcm-support@
662  EOF  EOF
663          return 1          return 1
664      fi      fi
665      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666      RETVAL=$?      RETVAL=$?
667      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
668          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 504  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 522  WARNING: Please contact <MITgcm-support@ Line 692  WARNING: Please contact <MITgcm-support@
692  EOF  EOF
693          return 1          return 1
694      fi      fi
695      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696      RETVAL=$?      RETVAL=$?
697      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
698          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 576  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
750      RET_C=$?      RET_C=$?
751      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
752        program hello        program hello
753        Real*8 wtime        REAL*8 wtime
754        external cloc        external cloc
755        call cloc(wtime)        call cloc(wtime)
756        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
757        end program hello        end
758  EOF  EOF
759      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
760        echo $COMM >> genmake_warnings
761        $COMM >> genmake_warnings 2>&1
762      RET_F=$?      RET_F=$?
763      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
764      RETVAL=$?      RETVAL=$?
765      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
766          HAVE_CLOC=t          HAVE_CLOC=t
# Line 598  EOF Line 770  EOF
770  }  }
771    
772    
773    check_HAVE_SIGREG()  {
774        if test ! "x$HAVE_SIGREG" = x ; then
775            return
776        fi
777        get_fortran_c_namemangling
778        cat <<EOF > genmake_tc_1.c
779    $FC_NAMEMANGLE
780    #include <stdlib.h>
781    #include <stdio.h>
782    #include <signal.h>
783    #include <errno.h>
784    #include <ucontext.h>
785    
786    int * ip;
787    
788    static void killhandler(
789        unsigned int sn, siginfo_t  si, struct ucontext *sc )
790    {
791        *ip = *ip + 1;
792        return;
793    }
794    
795    void FC_NAMEMANGLE(sigreg) (int * aip)
796    {
797        struct sigaction s;
798        ip = aip;
799        s.sa_flags = SA_SIGINFO;
800        s.sa_sigaction = (void *)killhandler;
801        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
802            printf("Sigaction returned error = %d\n", errno);
803            exit(0);
804        }
805        return;
806    }
807    EOF
808        make genmake_tc_1.o >> genmake_warnings 2>&1
809        RET_C=$?
810        cat <<EOF > genmake_tc_2.$FS
811          program hello
812          integer anint
813          common /iv/ anint
814          external sigreg
815          call sigreg(anint)
816          end
817    EOF
818        echo >> genmake_warnings
819        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
820        cat genmake_tc_2.$FS >> genmake_warnings
821        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
822        echo $COMM >> genmake_warnings
823        $COMM >> genmake_warnings 2>&1
824        RETVAL=$?
825        if test "x$RETVAL" = x0 ; then
826            HAVE_SIGREG=t
827            DEFINES="$DEFINES -DHAVE_SIGREG"
828        fi
829        rm -f genmake_tc*
830    }
831    
832    
833    check_HAVE_SETRLSTK()  {
834        if test "x$HAVE_SETRLSTK" = xt ; then
835            DEFINES="$DEFINES -DHAVE_SETRLSTK"
836            return
837        fi  
838        if test ! "x$HAVE_SETRLSTK" = x ; then
839            return
840        fi
841        get_fortran_c_namemangling
842        cat <<EOF > genmake_tc_1.c
843    $FC_NAMEMANGLE
844    #include <sys/time.h>
845    #include <sys/resource.h>
846    #include <unistd.h>
847    void FC_NAMEMANGLE(setrlstk) ()
848    {
849        struct rlimit rls;
850        rls.rlim_cur = RLIM_INFINITY;
851        rls.rlim_max = RLIM_INFINITY;
852        setrlimit(RLIMIT_STACK, &rls);
853        return;
854    }
855    EOF
856        make genmake_tc_1.o >> genmake_warnings 2>&1
857        RET_C=$?
858        cat <<EOF > genmake_tc_2.$FS
859          program hello
860          external setrlstk
861          call setrlstk()
862          end
863    EOF
864        echo >> genmake_warnings
865        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
866        cat genmake_tc_2.$FS >> genmake_warnings
867        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
868        echo $COMM >> genmake_warnings
869        $COMM >> genmake_warnings 2>&1
870        RETVAL=$?
871        if test "x$RETVAL" = x0 ; then
872            HAVE_SETRLSTK=t
873            DEFINES="$DEFINES -DHAVE_SETRLSTK"
874        fi
875        rm -f genmake_tc*
876    }
877    
878    
879    check_HAVE_STAT()  {
880        get_fortran_c_namemangling
881        cat <<EOF > genmake_tc_1.c
882    $FC_NAMEMANGLE
883    #include <stdio.h>
884    #include <stdlib.h>
885    #include <unistd.h>
886    #include <sys/stat.h>
887    #include <sys/types.h>
888    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
889    {
890        char name[512];
891        struct stat astat;
892    
893        name[0] = 'a'; name[1] = '\0';
894        if (! stat(name, &astat))
895            *nbyte = (int)(astat.st_size);
896        else
897            *nbyte = -1;
898    }
899    EOF
900        make genmake_tc_1.o >> genmake_tc.log 2>&1
901        RET_C=$?
902        cat <<EOF > genmake_tc_2.$FS
903          program hello
904          integer nbyte
905          call tfsize(nbyte)
906          print *," HELLO WORLD", nbyte
907          end
908    EOF
909        echo >> genmake_warnings
910        echo "running: check_HAVE_STAT()" >> genmake_warnings
911        cat genmake_tc_2.$FS >> genmake_warnings
912        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
913        echo $COMM >> genmake_warnings
914        $COMM >> genmake_tc.log 2>&1
915        RETVAL=$?
916        if test "x$RETVAL" = x0 ; then
917            HAVE_STAT=t
918            DEFINES="$DEFINES -DHAVE_STAT"
919        fi
920        rm -f genmake_tc*
921    }
922    
923    
924  check_netcdf_libs()  {  check_netcdf_libs()  {
925      cat <<EOF > genmake_tnc.for      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
926            return
927        fi
928        echo >> genmake_warnings
929        echo "running: check_netcdf_libs()" >> genmake_warnings
930        cat <<EOF > genmake_tnc.F
931        program fgennc        program fgennc
932  #include "netcdf.inc"  #include "netcdf.inc"
933    EOF
934        if test ! "x$MPI" = x ; then
935            echo '#include "mpif.h"' >> genmake_tnc.F
936        fi
937        cat <<EOF >> genmake_tnc.F
938        integer iret, ncid, xid        integer iret, ncid, xid
939        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
940        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 611  check_netcdf_libs()  { Line 944  check_netcdf_libs()  {
944        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
945        end        end
946  EOF  EOF
947      $CPP genmake_tnc.for > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
948          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
949        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
950        RET_CPP=f
951        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
952        echo "$COMM" >> genmake_tnc.log
953        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
954        if test "x$RET_CPP" = xf ; then
955            echo "  WARNING: CPP failed to pre-process the netcdf test." \
956                >> genmake_tnc.log
957            echo "    Please check that \$INCLUDES is properly set." \
958                >> genmake_tnc.log
959        fi
960        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
961        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
962        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
963            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
964      RET_COMPILE=$?      RET_COMPILE=$?
965      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
966      RETVAL=$?  
967      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
968        #EH3  execution or cannot support it (eg. cross-compilers)
969        #EH3
970        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
971        #EH3 RETVAL=$?
972        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
973    
974        if test "x$RET_COMPILE" = x0 ; then
975          HAVE_NETCDF=t          HAVE_NETCDF=t
976      else      else
977          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
978          $CPP genmake_tnc.for > genmake_tnc.f  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
979              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
980              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
981            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
982            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
983                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
985          RET_COMPILE=$?          RET_COMPILE=$?
986          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
987          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
988              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
989              HAVE_NETCDF=t              HAVE_NETCDF=t
990          else          else
991            # try again with "-lnetcdff" added to the libs
992                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
993                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
994                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
995                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
996                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
997                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
998                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
999                RET_COMPILE=$?
1000              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1001                if test "x$RET_COMPILE" = x0 ; then
1002                    LIBS="$LIBS -lnetcdff -lnetcdf"
1003                    HAVE_NETCDF=t
1004                fi
1005          fi          fi
1006      fi      fi
1007      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 649  PLATFORM= Line 1020  PLATFORM=
1020  LN=  LN=
1021  S64=  S64=
1022  KPP=  KPP=
1023  FC=  #FC=
1024  CPP=  #CC=gcc
1025    #CPP=
1026  LINK=  LINK=
1027  DEFINES=  DEFINES=
1028  PACKAGES=  PACKAGES=
1029  ENABLE=  ENABLE=
1030  DISABLE=  DISABLE=
1031  MAKEFILE=  # MAKEFILE=
1032  MAKEDEPEND=  # MAKEDEPEND=
1033  PDEPEND=  PDEPEND=
1034  DUMPSTATE=t  DUMPSTATE=t
1035  PDEFAULT=  PDEFAULT=
1036  OPTFILE=  OPTFILE=
1037  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1038  FFLAGS=  FFLAGS=
1039  FOPTIM=  FOPTIM=
1040  CFLAGS=  CFLAGS=
# Line 675  NOOPTFILES= Line 1047  NOOPTFILES=
1047  NOOPTFLAGS=  NOOPTFLAGS=
1048  MPI=  MPI=
1049  MPIPATH=  MPIPATH=
1050    TS=
1051    PAPIS=
1052    PCLS=
1053    FOOLAD=
1054    PAPI=
1055    PCL=
1056    HPMT=
1057    GSL=
1058    DEVEL=
1059    HAVE_TEST_L=
1060    
1061  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1062  HAVE_SYSTEM=  HAVE_SYSTEM=
1063  HAVE_FDATE=  HAVE_FDATE=
1064  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1065  HAVE_CLOC=  HAVE_CLOC=
1066    # HAVE_SETRLSTK=
1067    HAVE_STAT=
1068  HAVE_NETCDF=  HAVE_NETCDF=
1069  HAVE_ETIME=  HAVE_ETIME=
1070    IGNORE_TIME=
1071    
1072  MODS=  MODS=
1073  TOOLSDIR=  TOOLSDIR=
# Line 693  STANDARDDIRS="USE_THE_DEFAULT" Line 1078  STANDARDDIRS="USE_THE_DEFAULT"
1078  G2ARGS=  G2ARGS=
1079  BASH=  BASH=
1080  PWD=`pwd`  PWD=`pwd`
1081  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1082  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1083  THISHOSTNAME=`hostname`  EMBED_SRC=
1084    THISHOST=`hostname`
1085  THISCWD=`pwd`  THISCWD=`pwd`
1086  THISDATE=`date`  THISDATE=`date`
1087    THISUSER=`echo $USER`
1088    THISVER=
1089  MACHINE=`uname -a`  MACHINE=`uname -a`
1090  EXECUTABLE=  EXECUTABLE=
1091  EXEHOOK=  EXEHOOK=
# Line 726  TAMC_EXTRA= Line 1114  TAMC_EXTRA=
1114    
1115  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1116  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1117  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1118    
1119  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1120  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
1121  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1122  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1123  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1124  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1125    
# Line 763  for i in . $MODS ; do Line 1151  for i in . $MODS ; do
1151      fi      fi
1152  done  done
1153  printf "  getting local config information:  "  printf "  getting local config information:  "
1154  if test -e $gm_local ; then  if test -f $gm_local ; then
1155      echo "using $gm_local"      echo "using $gm_local"
1156      . $gm_local      . $gm_local
1157      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 772  else Line 1160  else
1160      echo "none found"      echo "none found"
1161  fi  fi
1162    
1163  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1164  #OPTIONS=  #OPTIONS=
1165  #n=0  #n=0
1166  #for i ; do  #for i ; do
# Line 784  fi Line 1172  fi
1172  #done  #done
1173  #parse_options  #parse_options
1174  ac_prev=  ac_prev=
1175  for ac_option ; do  for ac_option in "$@" ; do
1176    
1177      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1178    
# Line 880  for ac_option ; do Line 1268  for ac_option ; do
1268  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1269  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1270  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1271                        
1272            -cc | --cc)
1273                ac_prev=CC ;;
1274            -cc=* | --cc=*)
1275                CC=$ac_optarg ;;
1276            
1277          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1278              ac_prev=FC ;;              ac_prev=FC ;;
1279          -fc=* | --fc=*)          -fc=* | --fc=*)
# Line 901  for ac_option ; do Line 1294  for ac_option ; do
1294          -noieee | --noieee)          -noieee | --noieee)
1295              IEEE= ;;              IEEE= ;;
1296    
1297            -ts | --ts)
1298                TS=true ;;
1299            -papis | --papis)
1300                PAPIS=true ;;
1301            -pcls | --pcls)
1302                PCLS=true ;;
1303            -foolad | --foolad)
1304                FOOLAD=true ;;
1305            -papi | --papi)
1306                PAPI=true ;;
1307            -pcl | --pcl)
1308                PCL=true ;;
1309            -hpmt | --hpmt)
1310                HPMT=true ;;
1311    
1312            -gsl | --gsl)
1313                GSL=true ;;
1314    
1315            -devel | --devel)
1316                DEVEL=true ;;
1317    
1318          -mpi | --mpi)          -mpi | --mpi)
1319              MPI=true ;;              MPI=true ;;
1320          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 924  for ac_option ; do Line 1338  for ac_option ; do
1338              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1339          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1340              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1341            
1342            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1343                IGNORE_TIME="-DIGNORE_TIME" ;;
1344    
1345            -es | --es | -embed-source | --embed-source)
1346                EMBED_SRC=t ;;
1347    
1348          -*)          -*)
1349              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 939  for ac_option ; do Line 1359  for ac_option ; do
1359            
1360  done  done
1361    
1362    
1363  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1364      echo      echo
1365      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1366      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1367      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1368      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1369      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1370      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1371      echo      echo
1372  fi  fi
1373    
1374    #  Find the MITgcm ${ROOTDIR}
1375  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1376      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1377        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1378          ROOTDIR=".."          ROOTDIR=".."
1379      else      else
1380          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
# Line 976  if test ! -d ${ROOTDIR} ; then Line 1398  if test ! -d ${ROOTDIR} ; then
1398      exit 1      exit 1
1399  fi  fi
1400    
1401    #  Find the MITgcm ${THISVER}
1402    if test -f "${ROOTDIR}/doc/tag-index" ; then
1403        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1404    fi
1405    
1406    if test "x$MAKEFILE" = x ; then
1407        MAKEFILE="Makefile"
1408    fi
1409    
1410  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1411  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1412      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 1005  if test "x$OPTFILE" != xNONE ; then Line 1436  if test "x$OPTFILE" != xNONE ; then
1436      fi      fi
1437  fi  fi
1438    
 #  Check for broken systems that cannot correctly distinguish *.F and *.f files  
 # check_for_broken_Ff  
   
1439  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1440  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1441      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 1035  if test "x${AD_OPTFILE}" != xNONE ; then Line 1463  if test "x${AD_OPTFILE}" != xNONE ; then
1463      fi      fi
1464  fi  fi
1465    
1466  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1467    #  Set default values if not set by the optfile
1468    #
1469    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1470  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1471  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
1472      # add a trailing space so that it works within the Makefile syntax (see below)      # add a trailing space so that it works within the Makefile syntax (see below)
# Line 1051  Error: no Fortran compiler: please speci Line 1482  Error: no Fortran compiler: please speci
1482  EOF  EOF
1483      exit 1      exit 1
1484  fi  fi
1485    if test "x$CC" = x ; then
1486        CC=cc
1487    #     cat <<EOF 1>&2
1488    # Error: no C compiler: please specify using one of the following:
1489    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1490    #   2) the "-cc=XXX" command-line option
1491    #   3) the "./genmake_local" file
1492    # EOF
1493    #     exit 1
1494    fi
1495  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1496      LINK=$FC      LINK=$FC
1497  fi  fi
# Line 1085  EOF Line 1526  EOF
1526  else  else
1527      rm -f test_cpp      rm -f test_cpp
1528  fi  fi
1529  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1530  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1531      LN="ln -s"      LN="ln -s"
1532  fi  fi
# Line 1103  Error: The command "ln -s" failed -- ple Line 1542  Error: The command "ln -s" failed -- ple
1542  EOF  EOF
1543      exit 1      exit 1
1544  fi  fi
1545    test -L genmake_tlink > /dev/null 2>&1
1546    RETVAL=$?
1547    if test "x$RETVAL" = x0 ; then
1548        HAVE_TEST_L=t
1549    fi
1550  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1551    
1552  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1113  if test ! "x$MPI" = x ; then Line 1557  if test ! "x$MPI" = x ; then
1557        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1558  fi  fi
1559    
1560    if test ! "x$TS" = x ; then
1561          echo "  Turning on timing per timestep"
1562          if test ! "x$FOOLAD" = x ; then
1563                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1564          else
1565                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1566          fi
1567          PACKAGES="$PACKAGES showflops"
1568    fi
1569    if test ! "x$PAPIS" = x ; then
1570          echo "  Turning on PAPI flop summary per timestep"
1571          echo "  Please make sure PAPIINC, PAPILIB are defined"
1572          if test ! "x$FOOLAD" = x ; then
1573                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1574          else
1575                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1576          fi
1577          INCLUDES="$INCLUDES $PAPIINC"
1578          LIBS="$LIBS $PAPILIB"
1579          PACKAGES="$PACKAGES showflops"
1580    fi
1581    if test ! "x$PCLS" = x ; then
1582          echo "  Turning on PCL counter summary per timestep"
1583          echo "  Please make sure PCLINC, PCLLIB are defined"
1584          if test ! "x$FOOLAD" = x ; then
1585                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1586          else
1587                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1588          fi
1589          INCLUDES="$INCLUDES $PCLINC"
1590          LIBS="$LIBS $PCLLIB"
1591          PACKAGES="$PACKAGES showflops"
1592    fi
1593    if test ! "x$PAPI" = x ; then
1594          if test ! "x$PAPIS" = x ; then
1595              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1596              echo "  Sticking with PAPI flop summary per timestep!"
1597          else
1598              echo "  Turning on performance analysis with PAPI"
1599              echo "  Please make sure PAPIINC, PAPILIB are defined"
1600              DEFINES="$DEFINES -DUSE_PAPI"
1601              INCLUDES="$INCLUDES $PAPIINC"
1602              LIBS="$LIBS $PAPILIB"
1603          fi
1604    fi
1605    if test ! "x$PCL" = x ; then
1606          if test ! "x$PCLS" = x ; then
1607              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1608              echo "  Sticking with PCL flop summary per timestep!"
1609          else
1610              echo "  Turning on performance analysis with PCL"
1611              echo "  Please make sure PCLINC, PCLLIB are defined"
1612              DEFINES="$DEFINES -DUSE_PCL"
1613              INCLUDES="$INCLUDES $PCLINC"
1614              LIBS="$LIBS $PCLLIB"
1615          fi
1616    fi
1617    if test ! "x$HPMT" = x ; then
1618          if test ! "x$PAPI" = x ; then
1619              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1620              echo "  Sticking with PAPI!"
1621          else if test ! "x$PCL" = x ; then
1622              echo "  PCL and the HPM Toolkit cannot co-exist!"
1623              echo "  Sticking with PCL!"
1624          else
1625              echo "  Turning on performance analysis with the HPM Toolkit"
1626              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1627              DEFINES="$DEFINES -DUSE_LIBHPM"
1628              INCLUDES="$INCLUDES $HPMTINC"
1629              LIBS="$LIBS $HPMTLIB"
1630          fi
1631          fi
1632    fi
1633    if test ! "x$GSL" = x ; then
1634          echo "  Turning on use of GSL to control floating point calculations"
1635          echo "  Please make sure GSLINC, GSLLIB are defined"
1636          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1637          INCLUDES="$INCLUDES $GSLINC"
1638          LIBS="$LIBS $GSLLIB"
1639    fi
1640    
1641  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1642  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1643  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1644        program hello        program hello
1645        call system('echo hi')        call system('echo hi')
1646        end        end
1647  EOF  EOF
1648  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1649  RETVAL=$?  RETVAL=$?
1650  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1651      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1133  fi Line 1658  fi
1658  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1659    
1660  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1661  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1662        program hello        program hello
1663        CHARACTER(128) string        CHARACTER*(128) string
1664        string = ' '        string = ' '
1665        call fdate( string )        call fdate( string )
1666        print *, string        print *, string
1667        end        end
1668  EOF  EOF
1669  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1670  RETVAL=$?  RETVAL=$?
1671  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1672      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1154  fi Line 1679  fi
1679  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1680    
1681  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1682  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1683        program hello        program hello
1684        REAL*4 ACTUAL, TARRAY(2)        REAL*4 ACTUAL, TARRAY(2)
1685        EXTERNAL ETIME        EXTERNAL ETIME
# Line 1163  cat > genmake_tcomp.f <<EOF Line 1688  cat > genmake_tcomp.f <<EOF
1688        print *, tarray        print *, tarray
1689        end        end
1690  EOF  EOF
1691  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1692  RETVAL=$?  RETVAL=$?
1693  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1694      HAVE_ETIME=t      HAVE_ETIME=t
# Line 1181  if test "x$HAVE_CLOC" != x ; then Line 1706  if test "x$HAVE_CLOC" != x ; then
1706      echo "yes"      echo "yes"
1707  else  else
1708      echo "no"      echo "no"
1709        if test "x$EMBED_SRC" = xt ; then
1710            echo "    WARNING: you requested file embedding but it has"
1711            echo "      been disabled since C code cannot be called"
1712            EMBED_SRC=
1713        fi
1714    fi
1715    rm -f genmake_t*
1716    
1717    printf "  Can we unlimit the stack size using $FC...  "
1718    check_HAVE_SETRLSTK
1719    if test "x$HAVE_SETRLSTK" = xt ; then
1720        echo "yes"
1721    else
1722        echo "no"
1723    fi
1724    rm -f genmake_t*
1725    
1726    printf "  Can we register a signal handler using $FC...  "
1727    check_HAVE_SIGREG
1728    if test "x$HAVE_SIGREG" = xt ; then
1729        echo "yes"
1730    else
1731        echo "no"
1732    fi
1733    rm -f genmake_t*
1734    
1735    printf "  Can we use stat() through C calls...  "
1736    check_HAVE_STAT
1737    if test "x$HAVE_STAT" != x ; then
1738        echo "yes"
1739    else
1740        echo "no"
1741  fi  fi
1742  rm -f genmake_t*  rm -f genmake_t*
1743    
# Line 1191  if test "x$HAVE_NETCDF" != x ; then Line 1748  if test "x$HAVE_NETCDF" != x ; then
1748  else  else
1749      echo "no"      echo "no"
1750  fi  fi
1751    DEFINES="$DEFINES $IGNORE_TIME"
1752    
1753    if test "x$EMBED_SRC" = xt ; then
1754        build_embed_encode
1755    fi
1756    if test "x$EMBED_SRC" = xt ; then
1757        ENABLE="$ENABLE embed_files"
1758    fi
1759    
1760    
1761  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 1208  for d in $MODS ; do Line 1773  for d in $MODS ; do
1773  done  done
1774  echo  echo
1775    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1776  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1777      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1778  fi  fi
1779    
1780  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1781      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1782        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1783          EXEDIR=../exe          EXEDIR=../exe
1784      else      else
1785          EXEDIR=.          EXEDIR=.
# Line 1235  if test ! -d ${TOOLSDIR} ; then Line 1798  if test ! -d ${TOOLSDIR} ; then
1798      exit 1      exit 1
1799  fi  fi
1800  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1801      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1802        RETVAL=$?
1803        if test "x${RETVAL}" = x0 ; then
1804            S64='$(TOOLSDIR)/set64bitConst.sh'
1805        else
1806            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1807            RETVAL=$?
1808            if test "x${RETVAL}" = x0 ; then
1809                S64='$(TOOLSDIR)/set64bitConst.csh'
1810            else
1811                cat <<EOF
1812    
1813    ERROR: neither of the two default scripts:
1814    
1815        ${TOOLSDIR}/set64bitConst.sh
1816        ${TOOLSDIR}/set64bitConst.csh
1817    
1818      are working so please check paths or specify (with \$S64) a
1819      working version of this script.
1820    
1821    EOF
1822                exit 1
1823            fi
1824        fi
1825  fi  fi
1826  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1827    
# Line 1257  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1843  if test -r $ROOTDIR"/eesupp/src/Makefile
1843      fi      fi
1844  fi  fi
1845    
1846  #same for exch2  #same for pkg/exch2 and pkg/regrid
1847  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1848      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1849      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1850      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1851      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1852          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1853      else              rm -f make_${pdir}.errors
1854          echo "Error: problem encountered while building source files in exch2:"          else
1855          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1856          exit 1              cat make_${pdir}.errors 1>&2
1857                exit 1
1858            fi
1859      fi      fi
1860  fi  done
1861    
1862  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1863  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1334  else Line 1922  else
1922              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1923          done          done
1924          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1925          while ! expand_pkg_groups; do echo > /dev/null; done          RET=1
1926            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1927          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1928      fi      fi
1929  fi  fi
# Line 1379  done Line 1968  done
1968  rm -f ./.tmp_pack  rm -f ./.tmp_pack
1969  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1970    
1971    #  Check for package MNC: if NetCDF is available, then build the MNC
1972    #  template files ; otherwise, delete mnc from the list of packages.
1973    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1974    RETVAL=$?
1975    if test "x$RETVAL" = x0 ; then
1976        if test "x$HAVE_NETCDF" != xt ; then
1977            cat <<EOF
1978    
1979    *********************************************************************
1980    WARNING: the "mnc" package was enabled but tests failed to compile
1981      NetCDF applications.  Please check that:
1982    
1983      1) NetCDF is correctly installed for this compiler and
1984      2) the LIBS variable (within the "optfile") specifies the correct
1985           NetCDF library to link against.
1986    
1987      Due to this failure, the "mnc" package is now DISABLED.
1988    *********************************************************************
1989    
1990    EOF
1991            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1992            DISABLE="$DISABLE mnc"
1993        else
1994            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1995            RETVAL=$?
1996            if test "x${RETVAL}" = x0 ; then
1997                rm -f make_mnc.errors
1998            else
1999                echo "Error: problem encountered while building source files in pkg/mnc:"
2000                cat make_mnc.errors 1>&2
2001                exit 1
2002            fi
2003        fi
2004    fi
2005    
2006    #  Check for package PROFILES: if NetCDF is not available,
2007    #  then delete profiles from the list of available packages.
2008    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2009    RETVAL=$?
2010    if test "x$RETVAL" = x0 ; then
2011        if test "x$HAVE_NETCDF" != xt ; then
2012            cat <<EOF
2013    
2014    *********************************************************************
2015    WARNING: the "profiles" package was enabled but tests failed to
2016      compile NetCDF applications.  Please check that:
2017    
2018      1) NetCDF is correctly installed for this compiler and
2019      2) the LIBS variable (within the "optfile") specifies the correct
2020           NetCDF library to link against.
2021    
2022      Due to this failure, the "profiles" package is now DISABLED.
2023    *********************************************************************
2024    
2025    EOF
2026            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2027            DISABLE="$DISABLE profiles"
2028        fi
2029    fi
2030    
2031  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2032  ck=  ck=
2033  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2034      i=0      i=0
2035      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2036      rtot=$nname      rtot=$nname
2037      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2038    
2039          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2040          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1419  while test "x$ck" != xtt ; do Line 2068  while test "x$ck" != xtt ; do
2068    
2069          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2070          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2071                #echo "   " $pname ": need to add :" $dname
2072              in_dis="f"              in_dis="f"
2073              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2074                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1443  while test "x$ck" != xtt ; do Line 2093  while test "x$ck" != xtt ; do
2093              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2094              exit 1              exit 1
2095          fi          fi
2096          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2097            #i=$(( $i + 1 ))
2098      done      done
2099      ck=$ck"t"      ck=$ck"t"
2100  done  done
# Line 1462  for i in $PACKAGES ; do Line 2113  for i in $PACKAGES ; do
2113      fi      fi
2114  done  done
2115    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2116  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2117  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2118  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1508  for n in $names ; do Line 2132  for n in $names ; do
2132              fi              fi
2133          done          done
2134          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2135              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2136              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2137          fi          fi
2138      fi      fi
2139  done  done
2140  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2141  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2142      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2143      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2144  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2145    
# Line 1599  for i in $SOURCEDIRS ; do Line 2223  for i in $SOURCEDIRS ; do
2223          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2224      done      done
2225  done  done
2226    if test ! "x"$FS = "x.f" ; then
2227        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2228        mv -f ad_files_f ad_files
2229    fi
2230    
2231  echo  echo
2232  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2233  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2234  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2235      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2236          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2237      fi      fi
2238  done  done
2239    
2240    if test ! "x$DIVA" = x ; then
2241        echo "  Creating the pseudo-MPI include directory"
2242        INCLUDES="-I./mpi_headers $INCLUDES"
2243        rm -rf ./mpi_headers
2244        mkdir -p ./mpi_headers
2245    
2246        if test "x$MPIINCLUDEDIR" = x ; then
2247            if test "x$MPIHOME" = x ; then
2248                MPIHOME='/usr'
2249            fi
2250            MPIINCLUDEDIR='$MPIHOME/include'
2251        fi
2252        
2253        if test -r $MPIINCLUDEDIR/mpif.h ; then
2254            for i in $MPI_HEADER_FILES; do
2255                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2256            done
2257    
2258            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2259        else
2260            echo " We cannot create a copy of mpif.h!"
2261    #       exit -1
2262        fi
2263    fi
2264    
2265  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2266  rm -rf .links.tmp  rm -rf .links.tmp
2267  mkdir .links.tmp  mkdir .links.tmp
2268    touch .links.tmp/foo
2269    if test ! -r ".links.tmp/foo" ; then
2270        echo
2271        echo "ERROR : something is wrong with your directory permissions or"
2272        echo "   your user file-creation mask (\"umask\") since creating a"
2273        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2274        echo "   not working.  Please try setting your umask to something"
2275        echo "   sane such as:"
2276        echo
2277        echo "      umask 0002"
2278        echo
2279        echo "   and please verify that you have the proper permissions for"
2280        echo "   creating sub-directories and then reading files created"
2281        echo "   within them."
2282        echo
2283        exit 1
2284    fi
2285    rm -f .links.tmp/foo
2286  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2287  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2288  printf 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
# Line 1630  for d in $alldirs ; do Line 2298  for d in $alldirs ; do
2298      for sf in $sfiles ; do      for sf in $sfiles ; do
2299          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2300              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2301                    ignore_f=f
2302                  case $d/$sf in                  case $d/$sf in
2303                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2304                            ignore_f=t
2305                          ;;                          ;;
2306                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2307                            ignore_f=t
2308                          ;;                          ;;
2309                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2310                            ignore_f=t
2311                          ;;                          ;;
2312                    *)                    ./BUILD_INFO.h)
2313                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
                         ;;  
                 esac  
                 extn=`echo $sf | $AWK -F '.' '{print $NF}'`  
                 case $extn in  
                     F)  
                         echo    " \\"  >> srclist.inc  
                         printf " $sf" >> srclist.inc  
                         ;;  
                     F90)  
                         echo    " \\"  >> f90srclist.inc  
                         printf " $sf" >> f90srclist.inc  
                         ;;  
                     c)  
                         echo    " \\"  >> csrclist.inc  
                         printf " $sf" >> csrclist.inc  
2314                          ;;                          ;;
2315                      h)                    ./EMBEDDED_FILES.h)
2316                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         printf " $sf" >> hlist.inc  
2317                          ;;                          ;;
2318                      flow)                    *)
2319                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2320                          printf " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2321                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2322                                ignore_f=t
2323                            else
2324                                touch .links.tmp/$sf
2325                                deplist="$deplist $sf"
2326                            fi
2327                          ;;                          ;;
2328                  esac                  esac
2329                    if test "x$ignore_f" = xf ; then
2330                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2331                        case $extn in
2332                            F)
2333                                echo    " \\"  >> srclist.inc
2334                                printf " $sf" >> srclist.inc
2335                                ;;
2336                            F90)
2337                                echo    " \\"  >> f90srclist.inc
2338                                printf " $sf" >> f90srclist.inc
2339                                ;;
2340                            c)
2341                                echo    " \\"  >> csrclist.inc
2342                                printf " $sf" >> csrclist.inc
2343                                ;;
2344                            h)
2345                                echo    " \\"  >> hlist.inc
2346                                printf " $sf" >> hlist.inc
2347                                ;;
2348                            flow)
2349                                echo    " \\"  >> ad_flow_files.inc
2350                                printf " $sf" >> ad_flow_files.inc
2351                                ;;
2352                        esac
2353                    fi
2354              fi              fi
2355          fi          fi
2356      done      done
# Line 1682  echo "" >> f90srclist.inc Line 2368  echo "" >> f90srclist.inc
2368  echo "" >> hlist.inc  echo "" >> hlist.inc
2369  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
2370    
2371  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2372      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2373  fi  fi
2374  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1693  echo "#    $THISDATE" >> $MAKEFILE Line 2379  echo "#    $THISDATE" >> $MAKEFILE
2379  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2380  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2381  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2382  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2383    
2384  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2385  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1739  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2425  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2425  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2426    
2427  # These files are created by Makefile  # These files are created by Makefile
2428  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2429  EOF  EOF
2430    
2431  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2432        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2433    else
2434        echo "EMBEDDED_FILES = " >>$MAKEFILE
2435    fi
2436    
2437    #  Note: figure out some way to add Hyades JAM libraries here
2438  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2439  # Unix ln (link)  # Unix ln (link)
2440  LN = ${LN}  LN = ${LN}
# Line 1758  KPP = ${KPP} Line 2448  KPP = ${KPP}
2448  FC = ${FC}  FC = ${FC}
2449  # Fortran compiler  # Fortran compiler
2450  F90C = ${F90C}  F90C = ${F90C}
2451    # C compiler
2452    CC = ${CC}
2453  # Link editor  # Link editor
2454  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2455    
# Line 1780  CFLAGS = ${CFLAGS} Line 2472  CFLAGS = ${CFLAGS}
2472  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2473  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2474  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2475  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2476  # Name of the Mekfile  # Name of the Mekfile
2477  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2478    
# Line 1793  cat hlist.inc         >> $MAKEFILE Line 2485  cat hlist.inc         >> $MAKEFILE
2485  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2486  echo >> $MAKEFILE  echo >> $MAKEFILE
2487  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2488  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2489  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2490  echo >> $MAKEFILE  echo >> $MAKEFILE
2491  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
# Line 1804  rm -f ad_flow_files.inc Line 2496  rm -f ad_flow_files.inc
2496  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2497    
2498  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2499  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2500          @echo Creating \$@ ...          @echo Creating \$@ ...
2501          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2502  depend:  depend:
# Line 1813  depend: Line 2505  depend:
2505          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2506          -rm -f makedepend.out          -rm -f makedepend.out
2507    
2508    lib: libmitgcmuv.a
2509    
2510    libmitgcmuv.a: \$(OBJFILES)
2511            ar rcv libmitgcmuv.a \$(OBJFILES)
2512            ar d   libmitgcmuv.a main.o
2513    
2514  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2515    
2516  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
# Line 1822  output.txt: \$(EXECUTABLE) Line 2520  output.txt: \$(EXECUTABLE)
2520          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2521    
2522  clean:  clean:
2523          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2524            -rm -rf *.o
2525            -rm -rf *.$FS
2526  Clean:  Clean:
2527          @make clean          @make clean
2528          @make cleanlinks          @make cleanlinks
# Line 1833  CLEAN: Line 2533  CLEAN:
2533          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2534          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2535          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2536          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2537            -rm -rf mnc_test_*
2538    
2539  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2540  makefile:  makefile:
# Line 1841  makefile: Line 2542  makefile:
2542  cleanlinks:  cleanlinks:
2543          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2544    
2545  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2546  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2547          @echo Creating \$@ ...          @echo Creating \$@ ...
2548          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
# Line 1852  FC_NAMEMANGLE.h: Line 2553  FC_NAMEMANGLE.h:
2553          @echo Creating \$@ ...          @echo Creating \$@ ...
2554          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2555    
2556    BUILD_INFO.h:
2557            @echo Creating \$@ ...
2558    EOF
2559    
2560    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2561    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2562    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2563    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2564    
2565    if test "x$EMBED_SRC" = xt ; then
2566        cat >>$MAKEFILE <<EOF
2567    
2568    decode_files.o : EMBEDDED_FILES.h
2569    
2570    ##  \$(F77FILES)
2571    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2572            @echo Creating \$@ ...
2573            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2574            -rm -f all_fF.tar.gz
2575            -gzip all_fF.tar
2576    
2577    EMBEDDED_FILES.h : all_fF.tar.gz
2578            @echo Creating \$@ ...
2579            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2580    
2581    EOF
2582    fi
2583    
2584    cat >>$MAKEFILE <<EOF
2585    
2586  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
2587    
2588  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
2589    ## %.o : %.F
2590    
2591  .F.$FS:  .F.$FS:
2592          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2593  .$FS.o:  .$FS.o:
2594          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2595  .F90.$FS90:  .F90.o:  
         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  
 .$FS90.o:  
2596          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2597  .c.o:  .c.o:
2598          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2599    
2600  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2601  .F.p:  .F.p:
# Line 1889  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2619  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2619  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2620  for i in $ad_vars ; do  for i in $ad_vars ; do
2621      name=$i      name=$i
2622      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2623      eval $t1      eval $t1
2624      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2625      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2626  done  done
2627    
2628  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
# Line 1909  rm -f ad_files Line 2639  rm -f ad_files
2639  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2640    
2641  # ... AD ...  # ... AD ...
2642  adall: ad_taf  adall: \$(EXE_AD)
2643  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2644  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2645    
2646  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2647          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2648          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2649          -rm -f ad_config.template          -rm -f ad_config.template
2650          @make \$(F77FILES)          @make \$(F77FILES)
2651          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2652          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2653    
2654  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2655          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2656          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2657    
2658  adtafonly:  adtafonly:
2659          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2660          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2661    
2662  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2663          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2664    
2665  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2666          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2667          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2668    
2669  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2670          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2671    
2672    adonlyfwd:
2673            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2674    
2675    adtrick:
2676            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2677    
2678  # ... FTL ...  # ... FTL ...
2679  ftlall: ftl_taf  ftlall: ftl_taf
2680  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2681  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2682    
2683  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2684          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2685          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2686          -rm -f ftl_config.template          -rm -f ftl_config.template
2687          @make \$(F77FILES)          @make \$(F77FILES)
2688          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2689          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2690    
2691  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2692          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2693          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2694    
2695  ftltafonly:  ftltafonly:
2696          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2697          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2698    
2699  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2700          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2701    
2702  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2703          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2704          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2705    
2706  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2707          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2708    
2709    
2710  # ... SVD ...  # ... SVD ...
2711  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2712  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2713            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2714    svdall: svd_touch svd_taf
2715    
2716  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2717          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2718    
2719            @echo "--->>> Only COMPILE svd code! <<<---"
2720            @echo "--->>> Assumes you previously <<<---"
2721            @echo "--->>> did make svdtaf        <<<---"
2722    
2723    svd_touch:
2724            @echo "--->>> Only COMPILE svd code! <<<---"
2725            @echo "--->>> Assumes you previously <<<---"
2726            @echo "--->>> did make svdtaf        <<<---"
2727            touch ad_taf_output.$FS ftl_taf_output.$FS
2728            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2729            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2730            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2731            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2732            -rm -f ftl_config.template
2733    
2734  #=========================================  #=========================================
2735    

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