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revision 1.59 by edhill, Sun Jan 11 17:02:47 2004 UTC revision 1.81 by cnh, Wed Jun 30 00:58:06 2004 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 37  test_for_string_in_file() { Line 37  test_for_string_in_file() {
37      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
41          grep -i "$strng" $file          grep -i "$strng" $file
42          return 1          return 1
43      fi      fi
# Line 67  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -e Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -e "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -e Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161  # Guess possible config options for this host  # Guess possible config options for this host
162  find_possible_configs()  {  find_possible_configs()  {
163    
# Line 80  find_possible_configs()  { Line 166  find_possible_configs()  {
166      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
167      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
168      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
169      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
170        PLATFORM=$tmp3
171        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
172      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
173      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
174            
# Line 100  find_possible_configs()  { Line 188  find_possible_configs()  {
188          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
189      fi      fi
190    
191      # makedepend is not always available      #  The "original" makedepend is part of the Imake system that is
192        #  most often distributed with XFree86 or with an XFree86 source
193        #  package.  As a result, many machines (eg. generic Linux) do not
194        #  have a system-default "makedepend" available.  For those
195        #  systems, we have two fall-back options:
196        #
197        #    1) a makedepend implementation shipped with the cyrus-imapd
198        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
199        #
200        #    2) a known-buggy xmakedpend shell script
201        #
202        #  So the choices are, in order:
203        #
204        #    1) use the user-specified program
205        #    2) use a system-wide default
206        #    3) locally build and use the cyrus implementation
207        #    4) fall back to the buggy local xmakedpend script
208        #
209      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
210        which makedepend >& /dev/null        which makedepend > /dev/null 2>&1
211        RETVAL=$?        RV0=$?
212        if test "x${RETVAL}" = x1 ; then        cat <<EOF >> genmake_tc.f
213           echo "    makedepend was not found. Using xmakedpend instead."        program test
214           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'        write(*,*) 'test'
215          stop
216          end
217    EOF
218          makedepend genmake_tc.f > /dev/null 2>&1
219          RV1=$?
220          if test ! "x${RV0}${RV1}" = x00 ; then
221             echo "    a system-default makedepend was not found."
222    
223             #  Try to build the cyrus impl
224             rm -f ./genmake_cy_md
225             (
226                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
227                     &&  ./configure > /dev/null 2>&1  \
228                     &&  make > /dev/null 2>&1
229                 if test -x ./makedepend.exe ; then
230                     $LN ./makedepend.exe ./makedepend
231                 fi
232                 ./makedepend ifparser.c > /dev/null 2>&1  \
233                     &&  echo "true"
234             ) > ./genmake_cy_md
235             grep true ./genmake_cy_md > /dev/null 2>&1
236             RETVAL=$?
237             if test "x$RETVAL" = x0 ; then
238                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
239             else
240                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
241             fi
242             rm -f ./genmake_cy_md
243        fi        fi
244      fi      fi
245    
# Line 145  EOF Line 278  EOF
278          echo "   "$p_FC          echo "   "$p_FC
279          if test "x$FC" = x ; then          if test "x$FC" = x ; then
280              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
281                echo "  Setting FORTRAN compiler to: "$FC
282          fi          fi
283      fi      fi
284    
285      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
286          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
287          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
288              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
289              echo "  The options file:  $p_OF"          fi
290              echo "    appears to match so we'll use it."      fi
291              break  #    echo "  The options file:  $p_OF"
292          fi  #    echo "    appears to match so we'll use it."
293      done  #   for i in $p_FC ; do
294    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
295    #if test -r $p_OF ; then
296    #    OPTFILE=$p_OF
297    #    echo "  The options file:  $p_OF"
298    #    echo "    appears to match so we'll use it."
299    #    break
300    #fi
301    #   done
302      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
303          cat 1>&2 <<EOF          cat 1>&2 <<EOF
304    
# Line 215  get_pdepend_list()  { Line 357  get_pdepend_list()  {
357      . ./.pd_tmp      . ./.pd_tmp
358      rm -f ./.pd_tmp      rm -f ./.pd_tmp
359    
360      echo -n "PNAME = "${}      printf "PNAME = "${}
361  }  }
362    
363    
# Line 229  Usage: "$0" [OPTIONS] Line 371  Usage: "$0" [OPTIONS]
371      -help | --help | -h | --h      -help | --help | -h | --h
372            Print this help message and exit.            Print this help message and exit.
373    
374        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
375          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
376              Use "NAME" as the adoptfile.  By default, the file at
377              "tools/adjoint_options/adjoint_default" will be used.
378    
379      -nooptfile | --nooptfile      -nooptfile | --nooptfile
380        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
381        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 253  Usage: "$0" [OPTIONS] Line 400  Usage: "$0" [OPTIONS]
400        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
401            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
402    
403        -makedepend NAME | -md NAME
404          --makedepend=NAME | -md=NAME
405              Use "NAME" for the MAKEDEPEND program.
406    
407      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
408        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
409            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 294  Usage: "$0" [OPTIONS] Line 445  Usage: "$0" [OPTIONS]
445            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
446            is being used.            is being used.
447    
448        -mpi | --mpi
449              Include MPI header files and link to MPI libraries
450        -mpi=PATH | --mpi=PATH
451              Include MPI header files and link to MPI libraries using MPI_ROOT
452              set to PATH. i.e. Include files from $PATH/include, link to libraries
453              from $PATH/lib and use binaries from $PATH/bin.
454    
455        -bash NAME
456              Explicitly specify the Bourne or BASH shell to use
457    
458    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
459    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
460    
# Line 437  EOF Line 598  EOF
598  }  }
599    
600    
601    check_netcdf_libs()  {
602        cat <<EOF > genmake_tnc.for
603          program fgennc
604    #include "netcdf.inc"
605          integer iret, ncid, xid
606          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
607          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
608          iret = nf_def_dim(ncid, 'X', 11, xid)
609          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
610          iret = nf_close(ncid)
611          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
612          end
613    EOF
614        $CPP genmake_tnc.for > genmake_tnc.f  \
615            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
616        RET_COMPILE=$?
617        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
618        RETVAL=$?
619        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
620            HAVE_NETCDF=t
621        else
622            # try again with "-lnetcdf" added to the libs
623            $CPP genmake_tnc.for > genmake_tnc.f  \
624                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
625                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
626            RET_COMPILE=$?
627            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
628            RETVAL=$?
629            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
630                LIBS="$LIBS -lnetcdf"
631                HAVE_NETCDF=t
632            else
633                cat genmake_tnc.log >> genmake_warnings
634            fi
635        fi
636        rm -f genmake_tnc*
637    }
638    
639    
640    
641    ###############################################################################
642    #   Sequential part of script starts here
643    ###############################################################################
644    
645  #  Set defaults here  #  Set defaults here
646  COMMANDL="$0 $@"  COMMANDL="$0 $@"
647    
# Line 445  LN= Line 650  LN=
650  S64=  S64=
651  KPP=  KPP=
652  FC=  FC=
653    CPP=
654  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
655  DEFINES=  DEFINES=
656  PACKAGES=  PACKAGES=
657  ENABLE=  ENABLE=
# Line 463  FOPTIM= Line 668  FOPTIM=
668  CFLAGS=  CFLAGS=
669  KFLAGS1=  KFLAGS1=
670  KFLAGS2=  KFLAGS2=
671    #LDADD=
672  LIBS=  LIBS=
673  KPPFILES=  KPPFILES=
674  NOOPTFILES=  NOOPTFILES=
675  NOOPTFLAGS=  NOOPTFLAGS=
676    MPI=
677    MPIPATH=
678    
679  # DEFINES checked by test compilation  # DEFINES checked by test compilation
680  HAVE_SYSTEM=  HAVE_SYSTEM=
681  HAVE_FDATE=  HAVE_FDATE=
682  FC_NAMEMANGLE=  FC_NAMEMANGLE=
683  HAVE_CLOC=  HAVE_CLOC=
684    HAVE_NETCDF=
685    HAVE_ETIME=
686    
687  MODS=  MODS=
688  TOOLSDIR=  TOOLSDIR=
# Line 480  SOURCEDIRS= Line 690  SOURCEDIRS=
690  INCLUDEDIRS=  INCLUDEDIRS=
691  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
692    
693    G2ARGS=
694    BASH=
695  PWD=`pwd`  PWD=`pwd`
696  MAKE=make  MAKE=make
697  AWK=awk  AWK=awk
# Line 495  IEEE= Line 707  IEEE=
707  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
708      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
709  fi  fi
710    FS=
711    FS90=
712    
713  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
714  AD_OPTFILE=  AD_OPTFILE=
# Line 512  TAMC_EXTRA= Line 726  TAMC_EXTRA=
726    
727  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
728  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
729  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
730    
731  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
732  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
733  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
734  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
735  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
736  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
737    
738  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
739  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 548  for i in . $MODS ; do Line 762  for i in . $MODS ; do
762          break          break
763      fi      fi
764  done  done
765  echo -n "  getting local config information:  "  printf "  getting local config information:  "
766  if test -e $gm_local ; then  if test -e $gm_local ; then
767      echo "using $gm_local"      echo "using $gm_local"
768      . $gm_local      . $gm_local
# Line 572  fi Line 786  fi
786  ac_prev=  ac_prev=
787  for ac_option ; do  for ac_option ; do
788    
789        G2ARGS="$G2ARGS \"$ac_option\""
790    
791      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
792      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
793          eval "$ac_prev=\$ac_option"          eval "$ac_prev=\$ac_option"
# Line 613  for ac_option ; do Line 829  for ac_option ; do
829          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
830              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
831                    
832            -bash | --bash)
833                ac_prev=BASH ;;
834            -bash=* | --bash=*)
835                BASH=$ac_optarg ;;
836            
837            -makedepend | --makedepend | -md | --md)
838                ac_prev=MAKEDEPEND ;;
839            -makedepend=* | --makedepend=* | -md=* | --md=*)
840                MAKEDEPEND=$ac_optarg ;;
841            
842          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
843              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
844          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 660  for ac_option ; do Line 886  for ac_option ; do
886          -fc=* | --fc=*)          -fc=* | --fc=*)
887              FC=$ac_optarg ;;              FC=$ac_optarg ;;
888                    
889            -fs | --fs)
890                ac_prev=FS ;;
891            -fs=* | --fs=*)
892                FS=$ac_optarg ;;
893            
894            -fs90 | --fs90)
895                ac_prev=FS90 ;;
896            -fs90=* | --fs90=*)
897                FS90=$ac_optarg ;;
898            
899          -ieee | --ieee)          -ieee | --ieee)
900              IEEE=true ;;              IEEE=true ;;
901          -noieee | --noieee)          -noieee | --noieee)
902              IEEE= ;;              IEEE= ;;
903    
904            -mpi | --mpi)
905                MPI=true ;;
906            -mpi=* | --mpi=*)
907                MPIPATH=$ac_optarg
908                MPI=true ;;
909                    
910  #       -jam | --jam)  #       -jam | --jam)
911  #           JAM=1 ;;  #           JAM=1 ;;
# Line 716  if test "x${ROOTDIR}" = x ; then Line 958  if test "x${ROOTDIR}" = x ; then
958          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
959              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
960                  ROOTDIR=$d                  ROOTDIR=$d
961                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
962                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
963                  break                  break
964              fi              fi
# Line 750  if test "x$OPTFILE" != xNONE ; then Line 992  if test "x$OPTFILE" != xNONE ; then
992          . "$OPTFILE"          . "$OPTFILE"
993          RETVAL=$?          RETVAL=$?
994          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
995              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
996              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
997              exit 1              exit 1
998          fi          fi
# Line 763  if test "x$OPTFILE" != xNONE ; then Line 1005  if test "x$OPTFILE" != xNONE ; then
1005      fi      fi
1006  fi  fi
1007    
1008    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1009    # check_for_broken_Ff
1010    
1011  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1012  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1013      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 777  if test "x${AD_OPTFILE}" != xNONE ; then Line 1022  if test "x${AD_OPTFILE}" != xNONE ; then
1022          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1023          RETVAL=$?          RETVAL=$?
1024          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1025              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1026              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1027              exit 1              exit 1
1028          fi          fi
# Line 792  fi Line 1037  fi
1037    
1038  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1039  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1040    if test ! "x$BASH" = x ; then
1041        # add a trailing space so that it works within the Makefile syntax (see below)
1042        BASH="$BASH "
1043    fi
1044  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1045      cat <<EOF 1>&2      cat <<EOF 1>&2
1046    
# Line 805  fi Line 1054  fi
1054  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1055      LINK=$FC      LINK=$FC
1056  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1057  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1058      MAKE="make"      MAKE="make"
1059  fi  fi
1060    if test "x$CPP" = x ; then
1061        CPP=cpp
1062    fi
1063    #EH3 === UGLY ===
1064    #  The following is an ugly little hack to check for $CPP in /lib/ and
1065    #  it should eventually be replaced with a more general function that
1066    #  searches a combo of the user's path and a list of "usual suspects"
1067    #  to find the correct location for binaries such as $CPP.
1068    for i in " " "/lib/" ; do
1069        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1070    done
1071    #EH3 === UGLY ===
1072  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1073  RETVAL=$?  RETVAL=$?
1074  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 847  EOF Line 1105  EOF
1105  fi  fi
1106  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1107    
1108    #  Check for broken *.F/*.f handling and fix if possible
1109    check_for_broken_Ff
1110    
1111    if test ! "x$MPI" = x ; then
1112          echo "  Turning on MPI cpp macros"
1113          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1114    fi
1115    
1116  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1117  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1118  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1119        program hello        program hello
1120        call system('echo hi')        call system('echo hi')
# Line 867  else Line 1132  else
1132  fi  fi
1133  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1134    
1135  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1136  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1137        program hello        program hello
1138        CHARACTER(128) string        CHARACTER(128) string
# Line 888  else Line 1153  else
1153  fi  fi
1154  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1155    
1156  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1157    cat > genmake_tcomp.f <<EOF
1158          program hello
1159          REAL*4 TARRAY(2)
1160          call etime( tarray )
1161          print *, tarray
1162          end
1163    EOF
1164    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1165    RETVAL=$?
1166    if test "x$RETVAL" = x0 ; then
1167        HAVE_ETIME=t
1168        DEFINES="$DEFINES -DHAVE_ETIME"
1169        echo "yes"
1170    else
1171        HAVE_ETIME=
1172        echo "no"
1173    fi
1174    rm -f genmake_tcomp*
1175    
1176    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1177  check_HAVE_CLOC  check_HAVE_CLOC
1178  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1179      echo "yes"      echo "yes"
# Line 897  else Line 1182  else
1182  fi  fi
1183  rm -f genmake_t*  rm -f genmake_t*
1184    
1185    printf "  Can we create NetCDF-enabled binaries...  "
1186    check_netcdf_libs
1187    if test "x$HAVE_NETCDF" != x ; then
1188        echo "yes"
1189    else
1190        echo "no"
1191    fi
1192    
1193    
1194  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1195  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1196  for d in $MODS ; do  for d in $MODS ; do
1197      if test ! -d $d ; then      if test ! -d $d ; then
1198          echo          echo
1199          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1200          exit 1          exit 1
1201      else      else
1202          echo -n " $d"          printf " $d"
1203          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1204          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1205      fi      fi
# Line 936  if test "x${TOOLSDIR}" = x ; then Line 1229  if test "x${TOOLSDIR}" = x ; then
1229      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1230  fi  fi
1231  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1232      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1233      exit 1      exit 1
1234  fi  fi
1235  if test "x$S64" = x ; then  if test "x$S64" = x ; then
# Line 957  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1250  if test -r $ROOTDIR"/eesupp/src/Makefile
1250          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1251      else      else
1252          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1253          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1254          exit 1          exit 1
1255      fi      fi
1256  fi  fi
# Line 971  if test -r $ROOTDIR"/pkg/exch2/Makefile" Line 1264  if test -r $ROOTDIR"/pkg/exch2/Makefile"
1264          rm -f make_exch2.errors          rm -f make_exch2.errors
1265      else      else
1266          echo "Error: problem encountered while building source files in exch2:"          echo "Error: problem encountered while building source files in exch2:"
1267          cat make_exch2.errors          cat make_exch2.errors 1>&2
1268          exit 1          exit 1
1269      fi      fi
1270  fi  fi
# Line 1031  else Line 1324  else
1324          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1325          RETVAL=$?          RETVAL=$?
1326          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1327              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1328              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1329              exit 1              exit 1
1330          fi          fi
# Line 1039  else Line 1332  else
1332              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1333          done          done
1334          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1335          expand_pkg_groups          while ! expand_pkg_groups; do echo > /dev/null; done
1336          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1337      fi      fi
1338  fi  fi
1339    
1340  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1341    for i in $PACKAGES ; do
1342        echo $i >> ./.tmp_pack
1343    done
1344    for i in `grep  "-" ./.tmp_pack` ; do
1345        j=`echo $i | sed 's/[-]//'`
1346        DISABLE="$DISABLE $j"
1347    done
1348  pack=  pack=
1349  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1350      addit="t"      addit="t"
# Line 1061  PACKAGES="$pack" Line 1361  PACKAGES="$pack"
1361  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1362  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1363  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1364    # Test if each explicitly referenced package exists
1365  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1366      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1367        if test ! -d "$ROOTDIR/pkg/$j" ; then
1368          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1369          exit 1          exit 1
1370      fi      fi
1371      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1372  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1373  PACKAGES=  PACKAGES=
1374  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1375      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1376  done  done
1377    rm -f ./.tmp_pack
1378  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1379    
1380  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1159  for i in $PACKAGES ; do Line 1460  for i in $PACKAGES ; do
1460      fi      fi
1461  done  done
1462    
1463    #  Build MNC templates and check for ability to build and use NetCDF
1464    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1465    RETVAL=$?
1466    if test "x$RETVAL" = x0 ; then
1467        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1468        RETVAL=$?
1469        if test "x${RETVAL}" = x0 ; then
1470            rm -f make_mnc.errors
1471        else
1472            echo "Error: problem encountered while building source files in pkg/mnc:"
1473            cat make_mnc.errors 1>&2
1474            exit 1
1475        fi
1476        if test "x$HAVE_NETCDF" != xt ; then
1477            cat <<EOF
1478    
1479    WARNING: the "mnc" package has been enabled but tests failed to
1480      compile and/or execute NetCDF applications.  Please check that:
1481    
1482      1) NetCDF is installed for your compiler and
1483      2) the LIBS variable (within the 'optfile") specifies the correct
1484           NetCDF library to link against.
1485      
1486    EOF
1487        fi
1488    fi
1489    
1490  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1491  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
# Line 1271  for i in $SOURCEDIRS ; do Line 1598  for i in $SOURCEDIRS ; do
1598      done      done
1599  done  done
1600    
1601    
1602  echo  echo
1603  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1604  echo "  setting INCLUDES"  echo "  setting INCLUDES"
# Line 1287  rm -rf .links.tmp Line 1615  rm -rf .links.tmp
1615  mkdir .links.tmp  mkdir .links.tmp
1616  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1617  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1618  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1619  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1620  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1621  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1622  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1623  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1624  for d in $alldirs ; do  for d in $alldirs ; do
1625      deplist=      deplist=
# Line 1316  for d in $alldirs ; do Line 1644  for d in $alldirs ; do
1644                  case $extn in                  case $extn in
1645                      F)                      F)
1646                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1647                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1648                          ;;                          ;;
1649                      F90)                      F90)
1650                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1651                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1652                          ;;                          ;;
1653                      c)                      c)
1654                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1655                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1656                          ;;                          ;;
1657                      h)                      h)
1658                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1659                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1660                          ;;                          ;;
1661                      flow)                      flow)
1662                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1663                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1664                          ;;                          ;;
1665                  esac                  esac
1666              fi              fi
# Line 1361  echo "#    $MACHINE" >> $MAKEFILE Line 1689  echo "#    $MACHINE" >> $MAKEFILE
1689  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1690  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1691  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1692  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1693  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1694  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1695    
# Line 1429  FC = ${FC} Line 1757  FC = ${FC}
1757  # Fortran compiler  # Fortran compiler
1758  F90C = ${F90C}  F90C = ${F90C}
1759  # Link editor  # Link editor
1760  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1761    
1762  # Defines for CPP  # Defines for CPP
1763  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1461  cat csrclist.inc      >> $MAKEFILE Line 1789  cat csrclist.inc      >> $MAKEFILE
1789  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1790  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1791  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1792  echo               >> $MAKEFILE  echo >> $MAKEFILE
1793  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1794  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1795  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1796    echo >> $MAKEFILE
1797    echo '.SUFFIXES:' >> $MAKEFILE
1798    echo '.SUFFIXES: .o .F .p .'$FS' .c .F90 .'$FS90 >> $MAKEFILE
1799  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1800  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1801    
1802  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1803    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1804  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1805  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1806          @echo Creating \$@ ...          @echo Creating \$@ ...
1807          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1808  depend:  depend:
1809          @make links          @make links
1810          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1811          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1812            -rm -f makedepend.out
1813    
1814  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1815    
# Line 1492  output.txt: \$(EXECUTABLE) Line 1820  output.txt: \$(EXECUTABLE)
1820          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1821    
1822  clean:  clean:
1823          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1824  Clean:  Clean:
1825          @make clean          @make clean
1826          @make cleanlinks          @make cleanlinks
# Line 1503  CLEAN: Line 1831  CLEAN:
1831          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1832          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1833          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1834          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1835    
1836  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1837  makefile:  makefile:
1838          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
1839  cleanlinks:  cleanlinks:
1840          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1841    
1842  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets ($SPECIAL_FILES) which are create by make
1843  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
1844          @echo Creating \$@ ...          @echo Creating \$@ ...
1845          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1846  AD_CONFIG.h:  AD_CONFIG.h:
1847          @echo Creating \$@ ...          @echo Creating \$@ ...
1848          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1849  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
1850          @echo Creating \$@ ...          @echo Creating \$@ ...
1851          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
1852    
1853  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
1854  .F.f:  
1855    %.o : %.F
1856    
1857    .F.$FS:
1858          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1859  .f.o:  .$FS.o:
1860          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1861  .F90.f90:  .F90.$FS90:
1862          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1863  .f90.o:  .$FS90.o:
1864          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1865  .c.o:  .c.o:
1866          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1867    
1868  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
1869  .F.p:  .F.p:
1870          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1871  .p.f:  .p.$FS:
1872          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1873    
1874  #=========================================  #=========================================
# Line 1564  done Line 1895  done
1895    
1896  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1897  echo >> $MAKEFILE  echo >> $MAKEFILE
1898  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1899  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1900  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1901      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1902      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1903  done  done
1904  echo >> $MAKEFILE  echo >> $MAKEFILE
1905  rm -f ad_files  rm -f ad_files
# Line 1581  adtaf: ad_taf_output.f Line 1912  adtaf: ad_taf_output.f
1912  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1913    
1914  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1915          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1916          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1917          -rm -f ad_config.template          -rm -f ad_config.template
1918          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1613  ftltaf: ftl_taf_output.f Line 1944  ftltaf: ftl_taf_output.f
1944  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1945    
1946  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1947          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1948          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1949          -rm -f ftl_config.template          -rm -f ftl_config.template
1950          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1662  for i in $KPPFILES ; do Line 1993  for i in $KPPFILES ; do
1993      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
1994          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
1995      fi      fi
1996      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
1997  done  done
1998    
1999  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1672  for i in $NOOPTFILES ; do Line 2003  for i in $NOOPTFILES ; do
2003      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2004          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2005      fi      fi
2006      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2007      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2008  done  done
2009    
# Line 1686  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2017  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2017  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2018    
2019  # Create special header files  # Create special header files
2020  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2021  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2022      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2023  else  else
2024      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2025      RETVAL=$?      RETVAL=$?
2026      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
2027          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1700  else Line 2031  else
2031      fi      fi
2032  fi  fi
2033  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2034      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2035  fi  fi
2036    
2037    
2038  #  Write the "state" for future records  #  Write the "state" for future records
2039  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2040      echo -n "" > genmake_state      printf "" > genmake_state
2041      for i in $gm_state ; do      for i in $gm_state ; do
2042          t1="t2=\$$i"          t1="t2=\$$i"
2043          eval $t1          eval $t1

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