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revision 1.38 by edhill, Fri Nov 14 12:52:56 2003 UTC revision 1.81 by cnh, Wed Jun 30 00:58:06 2004 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -e Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -e "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -e Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161  # Guess possible config options for this host  # Guess possible config options for this host
162  find_possible_configs()  {  find_possible_configs()  {
163    
164      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
165      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
166      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
167      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
168        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
169        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
170        PLATFORM=$tmp3
171        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
172      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
173      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
174            
175      echo "test" > test      echo "test" > test
176      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 188  find_possible_configs()  {
188          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
189      fi      fi
190    
191      # makedepend is not always available      #  The "original" makedepend is part of the Imake system that is
192        #  most often distributed with XFree86 or with an XFree86 source
193        #  package.  As a result, many machines (eg. generic Linux) do not
194        #  have a system-default "makedepend" available.  For those
195        #  systems, we have two fall-back options:
196        #
197        #    1) a makedepend implementation shipped with the cyrus-imapd
198        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
199        #
200        #    2) a known-buggy xmakedpend shell script
201        #
202        #  So the choices are, in order:
203        #
204        #    1) use the user-specified program
205        #    2) use a system-wide default
206        #    3) locally build and use the cyrus implementation
207        #    4) fall back to the buggy local xmakedpend script
208        #
209      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
210        which makedepend >& /dev/null        which makedepend > /dev/null 2>&1
211        RETVAL=$?        RV0=$?
212        if test "x${RETVAL}" = x1 ; then        cat <<EOF >> genmake_tc.f
213           echo "    makedepend was not found. Using xmakedpend instead."        program test
214           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'        write(*,*) 'test'
215          stop
216          end
217    EOF
218          makedepend genmake_tc.f > /dev/null 2>&1
219          RV1=$?
220          if test ! "x${RV0}${RV1}" = x00 ; then
221             echo "    a system-default makedepend was not found."
222    
223             #  Try to build the cyrus impl
224             rm -f ./genmake_cy_md
225             (
226                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
227                     &&  ./configure > /dev/null 2>&1  \
228                     &&  make > /dev/null 2>&1
229                 if test -x ./makedepend.exe ; then
230                     $LN ./makedepend.exe ./makedepend
231                 fi
232                 ./makedepend ifparser.c > /dev/null 2>&1  \
233                     &&  echo "true"
234             ) > ./genmake_cy_md
235             grep true ./genmake_cy_md > /dev/null 2>&1
236             RETVAL=$?
237             if test "x$RETVAL" = x0 ; then
238                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
239             else
240                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
241             fi
242             rm -f ./genmake_cy_md
243        fi        fi
244      fi      fi
245    
# Line 149  EOF Line 278  EOF
278          echo "   "$p_FC          echo "   "$p_FC
279          if test "x$FC" = x ; then          if test "x$FC" = x ; then
280              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
281                echo "  Setting FORTRAN compiler to: "$FC
282          fi          fi
283      fi      fi
284    
285      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
286          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
287          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
288              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
289              echo "  The options file:  $p_OF"          fi
290              echo "    appears to match so we'll use it."      fi
291              break  #    echo "  The options file:  $p_OF"
292          fi  #    echo "    appears to match so we'll use it."
293      done  #   for i in $p_FC ; do
294    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
295    #if test -r $p_OF ; then
296    #    OPTFILE=$p_OF
297    #    echo "  The options file:  $p_OF"
298    #    echo "    appears to match so we'll use it."
299    #    break
300    #fi
301    #   done
302      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
303          cat 1>&2 <<EOF          cat 1>&2 <<EOF
304    
# Line 219  get_pdepend_list()  { Line 357  get_pdepend_list()  {
357      . ./.pd_tmp      . ./.pd_tmp
358      rm -f ./.pd_tmp      rm -f ./.pd_tmp
359    
360      echo -n "PNAME = "${}      printf "PNAME = "${}
361  }  }
362    
363    
364  #  Explain usage  #  Explain usage
365  usage()  {  usage()  {
366      echo  cat <<EOF
367      echo "Usage: "$0" [OPTIONS]"  
368      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
369      echo    where [OPTIONS] can be:
370      echo "    -help | --help | -h | --h"  
371      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
372      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
373      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
374      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
375      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
376      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
377      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
378      echo "    -make NAME | -m NAME"  
379      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
380      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
381      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
382      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
383      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
384      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
385      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
386      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
387      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
388      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
389      echo "      -disable=NAME | --disable=NAME"  
390      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
391      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
392      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
393      echo "      -standarddirs=NAME | --standarddirs=NAME"  
394      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
395      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
396  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
397  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
398      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
399      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
400      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
401      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
402      echo "    -[no]jam | --[no]jam"  
403      echo      -makedepend NAME | -md NAME
404      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
405      echo            Use "NAME" for the MAKEDEPEND program.
406      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
407      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
408      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
409      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
410      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
411      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
412    
413        -mods NAME | --mods NAME | -mo NAME | --mo NAME
414          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
415              Here, "NAME" specifies a list of directories that are
416              used for additional source code.  Files found in the
417              "mods list" are given preference over files of the same
418              name found elsewhere.
419    
420        -disable NAME | --disable NAME
421          -disable=NAME | --disable=NAME
422              Here "NAME" specifies a list of packages that we don't
423              want to use.  If this violates package dependencies,
424              genamke will exit with an error message.
425    
426        -enable NAME | --enable NAME
427          -enable=NAME | --enable=NAME
428              Here "NAME" specifies a list of packages that we wish
429              to specifically enable.  If this violates package
430              dependencies, genamke will exit with an error message.
431    
432        -standarddirs NAME | --standarddirs NAME
433          -standarddirs=NAME | --standarddirs=NAME
434              Here, "NAME" specifies a list of directories to be
435              used as the "standard" code.
436    
437        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
438          -fc=NAME | --fc=NAME
439              Use "NAME" as the fortran compiler.  By default, genmake
440              will search for a working compiler by trying a list of
441              "usual suspects" such as g77, f77, etc.
442    
443        -[no]ieee | --[no]ieee
444              Do or don't use IEEE numerics.  Note that this option
445              *only* works if it is supported by the OPTFILE that
446              is being used.
447    
448        -mpi | --mpi
449              Include MPI header files and link to MPI libraries
450        -mpi=PATH | --mpi=PATH
451              Include MPI header files and link to MPI libraries using MPI_ROOT
452              set to PATH. i.e. Include files from $PATH/include, link to libraries
453              from $PATH/lib and use binaries from $PATH/bin.
454    
455        -bash NAME
456              Explicitly specify the Bourne or BASH shell to use
457    
458      While it is most often a single word, the "NAME" variables specified
459      above can in many cases be a space-delimited string such as:
460    
461        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
462        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
463        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
464    
465      which, depending upon your shell, may need to be single-quoted.
466    
467      For more detailed genmake documentation, please see:
468    
469        http://mitgcm.org/devel_HOWTO/
470    
471    EOF
472    
473      exit 1      exit 1
474  }  }
475    
# Line 281  get_fortran_c_namemangling()  { Line 480  get_fortran_c_namemangling()  {
480      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
481  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
482  EOF  EOF
483      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
484      RETVAL=$?      RETVAL=$?
485      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
486          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
487          echo          cat <<EOF>> genmake_errors
488          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
489          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
490          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
491          rm -f genmake_tcomp.* genmake_test.*  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
492    EOF
493          return 1          return 1
494      fi      fi
495      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
496      RETVAL=$?      RETVAL=$?
497      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
498          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
499          echo          cat <<EOF>> genmake_warnings
500          echo "WARNING: The \"nm\" command failed."  
501          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
502          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
503          rm -f genmake_tcomp.* genmake_test.*  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
504    EOF
505          return 1          return 1
506      fi      fi
507      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.f <<EOF
# Line 310  EOF Line 510  EOF
510        call tsub( string )        call tsub( string )
511        end        end
512  EOF  EOF
513      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
514      RETVAL=$?      RETVAL=$?
515      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
516          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
517          echo          cat <<EOF>> genmake_warnings
518          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
519          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
520          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
521          rm -f genmake_tcomp.* genmake_test.*  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
522    EOF
523          return 1          return 1
524      fi      fi
525      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
526      RETVAL=$?      RETVAL=$?
527      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
528          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
529          echo          cat <<EOF>> genmake_warnings
530          echo "WARNING: The \"nm\" command failed."  
531          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
532          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
533          rm -f genmake_tcomp.* genmake_test.*  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
534    EOF
535          return 1          return 1
536      fi      fi
537    
# Line 357  EOF Line 558  EOF
558      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
559  }  }
560    
561    
562    check_HAVE_CLOC()  {
563        get_fortran_c_namemangling
564        cat <<EOF > genmake_tc_1.c
565    $FC_NAMEMANGLE
566    #include <stdio.h>
567    #include <stdlib.h>
568    #include <unistd.h>
569    #include <assert.h>
570    #include <sys/time.h>
571    void FC_NAMEMANGLE(cloc) ( double *curtim )
572    {
573     struct timeval tv1;
574     gettimeofday(&tv1 , (void *)NULL );
575     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
576     *curtim = *curtim/1.E6;
577    }
578    EOF
579        make genmake_tc_1.o >> genmake_tc.log 2>&1
580        RET_C=$?
581        cat <<EOF > genmake_tc_2.f
582          program hello
583          Real*8 wtime
584          external cloc
585          call cloc(wtime)
586          print *," HELLO WORLD", wtime
587          end program hello
588    EOF
589        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
590        RET_F=$?
591        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
592        RETVAL=$?
593        if test "x$RETVAL" = x0 ; then
594            HAVE_CLOC=t
595            DEFINES="$DEFINES -DHAVE_CLOC"
596        fi
597        rm -f genmake_tc*
598    }
599    
600    
601    check_netcdf_libs()  {
602        cat <<EOF > genmake_tnc.for
603          program fgennc
604    #include "netcdf.inc"
605          integer iret, ncid, xid
606          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
607          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
608          iret = nf_def_dim(ncid, 'X', 11, xid)
609          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
610          iret = nf_close(ncid)
611          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
612          end
613    EOF
614        $CPP genmake_tnc.for > genmake_tnc.f  \
615            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
616        RET_COMPILE=$?
617        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
618        RETVAL=$?
619        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
620            HAVE_NETCDF=t
621        else
622            # try again with "-lnetcdf" added to the libs
623            $CPP genmake_tnc.for > genmake_tnc.f  \
624                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
625                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
626            RET_COMPILE=$?
627            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
628            RETVAL=$?
629            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
630                LIBS="$LIBS -lnetcdf"
631                HAVE_NETCDF=t
632            else
633                cat genmake_tnc.log >> genmake_warnings
634            fi
635        fi
636        rm -f genmake_tnc*
637    }
638    
639    
640    
641    ###############################################################################
642    #   Sequential part of script starts here
643    ###############################################################################
644    
645  #  Set defaults here  #  Set defaults here
646  COMMANDL="$0 $@"  COMMANDL="$0 $@"
647    
# Line 365  LN= Line 650  LN=
650  S64=  S64=
651  KPP=  KPP=
652  FC=  FC=
653    CPP=
654  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
655  DEFINES=  DEFINES=
656  PACKAGES=  PACKAGES=
657  ENABLE=  ENABLE=
# Line 383  FOPTIM= Line 668  FOPTIM=
668  CFLAGS=  CFLAGS=
669  KFLAGS1=  KFLAGS1=
670  KFLAGS2=  KFLAGS2=
671    #LDADD=
672  LIBS=  LIBS=
673  KPPFILES=  KPPFILES=
674  NOOPTFILES=  NOOPTFILES=
675  NOOPTFLAGS=  NOOPTFLAGS=
676    MPI=
677    MPIPATH=
678    
679  # DEFINES checked by test compilation  # DEFINES checked by test compilation
680  HAVE_SYSTEM=  HAVE_SYSTEM=
681  HAVE_FDATE=  HAVE_FDATE=
682  FC_NAMEMANGLE=  FC_NAMEMANGLE=
683    HAVE_CLOC=
684    HAVE_NETCDF=
685    HAVE_ETIME=
686    
687  MODS=  MODS=
688  TOOLSDIR=  TOOLSDIR=
689  SOURCEDIRS=  SOURCEDIRS=
690  INCLUDEDIRS=  INCLUDEDIRS=
691  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
692    
693    G2ARGS=
694    BASH=
695  PWD=`pwd`  PWD=`pwd`
696  MAKE=make  MAKE=make
697  AWK=awk  AWK=awk
# Line 414  IEEE= Line 707  IEEE=
707  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
708      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
709  fi  fi
710    FS=
711    FS90=
712    
713  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
714  AD_OPTFILE=  AD_OPTFILE=
# Line 430  TAMC_EXTRA= Line 725  TAMC_EXTRA=
725    
726    
727  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
728  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
729  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
730    
731  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
732  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
733  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
734  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
735  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
736  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
737    
738  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
739  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 448  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 743  gm_s12="TAF_EXTRA TAMC_EXTRA"
743  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
744  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
745    
746    cat <<EOF
747    
748    GENMAKE :
749    
750    A program for GENerating MAKEfiles for the MITgcm project.  For a
751    quick list of options, use "genmake -h" or for more detail see:
752    
753      http://mitgcm.org/devel_HOWTO/
754    
755    EOF
756    
 echo  
757  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
758  gm_local="genmake_local"  gm_local="genmake_local"
759  for i in . $MODS ; do  for i in . $MODS ; do
# Line 458  for i in . $MODS ; do Line 762  for i in . $MODS ; do
762          break          break
763      fi      fi
764  done  done
765  echo -n "  getting local config information:  "  printf "  getting local config information:  "
766  if test -e $gm_local ; then  if test -e $gm_local ; then
767      echo "using $gm_local"      echo "using $gm_local"
768      . $gm_local      . $gm_local
# Line 482  fi Line 786  fi
786  ac_prev=  ac_prev=
787  for ac_option ; do  for ac_option ; do
788    
789        G2ARGS="$G2ARGS \"$ac_option\""
790    
791      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
792      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
793          eval "$ac_prev=\$ac_option"          eval "$ac_prev=\$ac_option"
# Line 503  for ac_option ; do Line 809  for ac_option ; do
809          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
810              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
811                    
812          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
813              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
814          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
815              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 523  for ac_option ; do Line 829  for ac_option ; do
829          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
830              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
831                    
832            -bash | --bash)
833                ac_prev=BASH ;;
834            -bash=* | --bash=*)
835                BASH=$ac_optarg ;;
836            
837            -makedepend | --makedepend | -md | --md)
838                ac_prev=MAKEDEPEND ;;
839            -makedepend=* | --makedepend=* | -md=* | --md=*)
840                MAKEDEPEND=$ac_optarg ;;
841            
842          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
843              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
844          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
845              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
846                    
847          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
848              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
849          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
850              PLATFORM=$ac_optarg ;;              echo
851                usage
852                ;;
853                    
854          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
855              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 558  for ac_option ; do Line 876  for ac_option ; do
876          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
877              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
878    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
879  #           -cpp | --cpp)  #           -cpp | --cpp)
880  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
881  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 573  for ac_option ; do Line 886  for ac_option ; do
886          -fc=* | --fc=*)          -fc=* | --fc=*)
887              FC=$ac_optarg ;;              FC=$ac_optarg ;;
888                    
889            -fs | --fs)
890                ac_prev=FS ;;
891            -fs=* | --fs=*)
892                FS=$ac_optarg ;;
893            
894            -fs90 | --fs90)
895                ac_prev=FS90 ;;
896            -fs90=* | --fs90=*)
897                FS90=$ac_optarg ;;
898            
899          -ieee | --ieee)          -ieee | --ieee)
900              IEEE=true ;;              IEEE=true ;;
901          -noieee | --noieee)          -noieee | --noieee)
902              IEEE= ;;              IEEE= ;;
903            
904          -mpi | --mpi)          -mpi | --mpi)
905              MPI=true ;;              MPI=true ;;
906          -nompi | --nompi)          -mpi=* | --mpi=*)
907              MPI= ;;              MPIPATH=$ac_optarg
908                MPI=true ;;
909                    
910          -jam | --jam)  #       -jam | --jam)
911              JAM=1 ;;  #           JAM=1 ;;
912          -nojam | --nojam)  #       -nojam | --nojam)
913              JAM=0 ;;  #           JAM=0 ;;
914                    
915          -ds | --ds)          -ds | --ds)
916              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 634  if test "x${ROOTDIR}" = x ; then Line 958  if test "x${ROOTDIR}" = x ; then
958          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
959              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
960                  ROOTDIR=$d                  ROOTDIR=$d
961                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
962                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
963                  break                  break
964              fi              fi
# Line 668  if test "x$OPTFILE" != xNONE ; then Line 992  if test "x$OPTFILE" != xNONE ; then
992          . "$OPTFILE"          . "$OPTFILE"
993          RETVAL=$?          RETVAL=$?
994          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
995              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
996              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
997              exit 1              exit 1
998          fi          fi
# Line 681  if test "x$OPTFILE" != xNONE ; then Line 1005  if test "x$OPTFILE" != xNONE ; then
1005      fi      fi
1006  fi  fi
1007    
1008    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1009    # check_for_broken_Ff
1010    
1011  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1012  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1013      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 695  if test "x${AD_OPTFILE}" != xNONE ; then Line 1022  if test "x${AD_OPTFILE}" != xNONE ; then
1022          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1023          RETVAL=$?          RETVAL=$?
1024          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1025              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1026              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1027              exit 1              exit 1
1028          fi          fi
# Line 708  if test "x${AD_OPTFILE}" != xNONE ; then Line 1035  if test "x${AD_OPTFILE}" != xNONE ; then
1035      fi      fi
1036  fi  fi
1037    
1038  #  Check that FC, LINK, CPP, S64, and LN are defined.  If not,  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1039  #  complain and abort!  #  either set defaults or complain and abort!
1040    if test ! "x$BASH" = x ; then
1041        # add a trailing space so that it works within the Makefile syntax (see below)
1042        BASH="$BASH "
1043    fi
1044  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1045      cat <<EOF 1>&2      cat <<EOF 1>&2
1046    
# Line 723  fi Line 1054  fi
1054  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1055      LINK=$FC      LINK=$FC
1056  fi  fi
1057    if test "x$MAKE" = x ; then
1058        MAKE="make"
1059    fi
1060  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1061      CPP="cpp"      CPP=cpp
1062  fi  fi
1063    #EH3 === UGLY ===
1064    #  The following is an ugly little hack to check for $CPP in /lib/ and
1065    #  it should eventually be replaced with a more general function that
1066    #  searches a combo of the user's path and a list of "usual suspects"
1067    #  to find the correct location for binaries such as $CPP.
1068    for i in " " "/lib/" ; do
1069        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1070    done
1071    #EH3 === UGLY ===
1072  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1073  RETVAL=$?  RETVAL=$?
1074  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 762  EOF Line 1105  EOF
1105  fi  fi
1106  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1107    
1108    #  Check for broken *.F/*.f handling and fix if possible
1109    check_for_broken_Ff
1110    
1111    if test ! "x$MPI" = x ; then
1112          echo "  Turning on MPI cpp macros"
1113          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1114    fi
1115    
1116  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1117  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1118  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1119        program hello        program hello
1120        call system('echo hi')        call system('echo hi')
# Line 781  else Line 1132  else
1132  fi  fi
1133  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1134    
1135  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1136  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1137        program hello        program hello
1138        CHARACTER(128) string        CHARACTER(128) string
# Line 802  else Line 1153  else
1153  fi  fi
1154  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1155    
1156  echo "  The name mangling convention for $FC is...  "  printf "  Do we have the etime() command using $FC...  "
1157  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  cat > genmake_tcomp.f <<EOF
1158  if test "x$FC_NAMEMANGLE" = x ; then        program hello
1159      get_fortran_c_namemangling        REAL*4 TARRAY(2)
1160  fi        call etime( tarray )
1161  echo "    '$FC_NAMEMANGLE'"        print *, tarray
1162  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template        end
1163  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  EOF
1164    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1165  RETVAL=$?  RETVAL=$?
1166  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" = x0 ; then
1167      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      HAVE_ETIME=t
1168        DEFINES="$DEFINES -DHAVE_ETIME"
1169        echo "yes"
1170    else
1171        HAVE_ETIME=
1172        echo "no"
1173    fi
1174    rm -f genmake_tcomp*
1175    
1176    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1177    check_HAVE_CLOC
1178    if test "x$HAVE_CLOC" != x ; then
1179        echo "yes"
1180    else
1181        echo "no"
1182    fi
1183    rm -f genmake_t*
1184    
1185    printf "  Can we create NetCDF-enabled binaries...  "
1186    check_netcdf_libs
1187    if test "x$HAVE_NETCDF" != x ; then
1188        echo "yes"
1189    else
1190        echo "no"
1191  fi  fi
1192    
1193    
1194  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1195  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1196  for d in $MODS ; do  for d in $MODS ; do
1197      if test ! -d $d ; then      if test ! -d $d ; then
1198          echo          echo
1199          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1200          exit 1          exit 1
1201      else      else
1202          echo -n " $d"          printf " $d"
1203          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1204          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1205      fi      fi
# Line 854  if test "x${TOOLSDIR}" = x ; then Line 1229  if test "x${TOOLSDIR}" = x ; then
1229      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1230  fi  fi
1231  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1232      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1233      exit 1      exit 1
1234  fi  fi
1235  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1236      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1237  fi  fi
1238    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1239    
1240  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1241    
# Line 874  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1250  if test -r $ROOTDIR"/eesupp/src/Makefile
1250          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1251      else      else
1252          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1253          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1254          exit 1          exit 1
1255      fi      fi
1256  fi  fi
1257    
1258    #same for exch2
1259    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1260        echo "  Making source files in exch2 from  templates"
1261        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1262        RETVAL=$?
1263        if test "x${RETVAL}" = x0 ; then
1264            rm -f make_exch2.errors
1265        else
1266            echo "Error: problem encountered while building source files in exch2:"
1267            cat make_exch2.errors 1>&2
1268            exit 1
1269        fi
1270    fi
1271    
1272  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1273  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1274      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 911  rm -f ./.pd_tmp Line 1301  rm -f ./.pd_tmp
1301  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1302  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1303  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1304  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1305  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1306      for i in "." $MODS ; do      for i in "." $MODS ; do
1307          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 924  if test "x${PDEFAULT}" = x ; then Line 1314  if test "x${PDEFAULT}" = x ; then
1314      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1315  fi  fi
1316  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1317      echo "default packages file disabled"      echo "    default packages file disabled"
1318  else  else
1319      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1320          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1321      else      else
1322          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1323          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1324          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1325          RETVAL=$?          RETVAL=$?
1326          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1327              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1328              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1329              exit 1              exit 1
1330          fi          fi
# Line 943  else Line 1332  else
1332              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1333          done          done
1334          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1335          expand_pkg_groups          while ! expand_pkg_groups; do echo > /dev/null; done
1336          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1337      fi      fi
1338  fi  fi
1339    
1340  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1341    for i in $PACKAGES ; do
1342        echo $i >> ./.tmp_pack
1343    done
1344    for i in `grep  "-" ./.tmp_pack` ; do
1345        j=`echo $i | sed 's/[-]//'`
1346        DISABLE="$DISABLE $j"
1347    done
1348  pack=  pack=
1349  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1350      addit="t"      addit="t"
# Line 965  PACKAGES="$pack" Line 1361  PACKAGES="$pack"
1361  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1362  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1363  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1364    # Test if each explicitly referenced package exists
1365  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1366      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1367        if test ! -d "$ROOTDIR/pkg/$j" ; then
1368          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1369          exit 1          exit 1
1370      fi      fi
1371      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1372  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1373  PACKAGES=  PACKAGES=
1374  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1375      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1376  done  done
1377    rm -f ./.tmp_pack
1378  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1379    
1380  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1063  for i in $PACKAGES ; do Line 1460  for i in $PACKAGES ; do
1460      fi      fi
1461  done  done
1462    
1463    #  Build MNC templates and check for ability to build and use NetCDF
1464    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1465    RETVAL=$?
1466    if test "x$RETVAL" = x0 ; then
1467        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1468        RETVAL=$?
1469        if test "x${RETVAL}" = x0 ; then
1470            rm -f make_mnc.errors
1471        else
1472            echo "Error: problem encountered while building source files in pkg/mnc:"
1473            cat make_mnc.errors 1>&2
1474            exit 1
1475        fi
1476        if test "x$HAVE_NETCDF" != xt ; then
1477            cat <<EOF
1478    
1479  # Create a list of #define and #undef to enable/disable packages  WARNING: the "mnc" package has been enabled but tests failed to
1480  PACKAGES_DOT_H=PACKAGES_CONFIG.h    compile and/or execute NetCDF applications.  Please check that:
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
1481    
1482  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1483      2) the LIBS variable (within the 'optfile") specifies the correct
1484           NetCDF library to link against.
1485      
1486  EOF  EOF
1487        fi
1488    fi
1489    
1490    # Create a list of #define and #undef to enable/disable packages
1491    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1492  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1493  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1494  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1495  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1496  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1497  all_pack=  all_pack=
1498    DISABLED_PACKAGES=
1499  for n in $names ; do  for n in $names ; do
1500      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1501          has_pack="f"          has_pack="f"
# Line 1095  for n in $names ; do Line 1507  for n in $names ; do
1507          done          done
1508          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1509              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1510              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1511          fi          fi
1512      fi      fi
1513  done  done
1514  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1515  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1516      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1517      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1518  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1519    
1520  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1521      case $i in      case $i in
1522          aim_v23)          aim_v23)
1523              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1524              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1525              ;;              ;;
1526      esac      esac
1527  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1528    
1529  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1530    
1531  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1532  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1533  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1534      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1535  fi  fi
1536  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1537      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1538      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1539          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1540          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1541          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1542      else              exit 1
1543          SOURCEDIRS="$SOURCEDIRS $adr"          else
1544      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1545      adr="$ROOTDIR/$d/inc"          fi
1546      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1547          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1548          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1549          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1550      else              exit 1
1551          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1552      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1553  done          fi
1554        done
1555    fi
1556    
1557  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1558  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1559  CPP_OPTIONS=  CPP_OPTIONS=
1560    CPP_EEOPTIONS=
1561  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1562    names=`ls -1 "$ROOTDIR/pkg"`
1563  for i in $spaths ; do  for i in $spaths ; do
1564      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1565      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1566          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1567          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1568          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1569            for n in $names ; do
1570                test_for_package_in_cpp_options $CPP_OPTIONS $n
1571            done
1572        fi
1573        try="$i/CPP_EEOPTIONS.h"
1574        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1575            echo "    found CPP_EEOPTIONS=\"$try\""
1576            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1577    #**** not yet enabled ****
1578    #        test_for_mpi_in_cpp_eeoptions $try
1579    #**** not yet enabled ****
1580            CPP_EEOPTIONS="$try"
1581      fi      fi
1582  done  done
1583  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1584      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1585      exit 1      exit 1
1586  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1587    
1588  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1589  #  compiler.  #  compiler.
# Line 1198  for i in $SOURCEDIRS ; do Line 1598  for i in $SOURCEDIRS ; do
1598      done      done
1599  done  done
1600    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1601    
1602  echo  echo
1603  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1226  rm -rf .links.tmp Line 1615  rm -rf .links.tmp
1615  mkdir .links.tmp  mkdir .links.tmp
1616  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1617  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1618  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1619  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1620  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1621  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1622  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1623  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1624  for d in $alldirs ; do  for d in $alldirs ; do
1625      deplist=      deplist=
# Line 1239  for d in $alldirs ; do Line 1628  for d in $alldirs ; do
1628      for sf in $sfiles ; do      for sf in $sfiles ; do
1629          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1630              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1631                    case $d/$sf in
1632                      ./$PACKAGES_DOT_H)
1633                            ;;
1634                      ./AD_CONFIG.h)
1635                            ;;
1636                      ./FC_NAMEMANGLE.h)
1637                            ;;
1638                      *)
1639                            touch .links.tmp/$sf
1640                            deplist="$deplist $sf"
1641                            ;;
1642                    esac
1643                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1644                  case $extn in                  case $extn in
1645                      F)                      F)
1646                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1647                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1648                          ;;                          ;;
1649                      F90)                      F90)
1650                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1651                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1652                          ;;                          ;;
1653                      c)                      c)
1654                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1655                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1656                          ;;                          ;;
1657                      h)                      h)
1658                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1659                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1660                          ;;                          ;;
1661                      flow)                      flow)
1662                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1663                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1664                          ;;                          ;;
1665                  esac                  esac
1666              fi              fi
# Line 1290  echo "#    $MACHINE" >> $MAKEFILE Line 1689  echo "#    $MACHINE" >> $MAKEFILE
1689  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1690  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1691  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1692  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1693  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1694  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1695    
# Line 1299  EXE_FTL=$EXECUTABLE"_ftl" Line 1698  EXE_FTL=$EXECUTABLE"_ftl"
1698  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1699    
1700  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1701    #
1702    # OPTFILE="$OPTFILE"
1703  #  #
1704  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1705  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1332  EXE_AD      = ${EXE_AD} Line 1733  EXE_AD      = ${EXE_AD}
1733  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1734  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1735    
1736    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1737    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1738    
1739    # These files are created by Makefile
1740    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1741    
1742  EOF  EOF
1743    
1744  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1350  FC = ${FC} Line 1757  FC = ${FC}
1757  # Fortran compiler  # Fortran compiler
1758  F90C = ${F90C}  F90C = ${F90C}
1759  # Link editor  # Link editor
1760  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1761    
1762  # Defines for CPP  # Defines for CPP
1763  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1382  cat csrclist.inc      >> $MAKEFILE Line 1789  cat csrclist.inc      >> $MAKEFILE
1789  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1790  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1791  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1792  echo               >> $MAKEFILE  echo >> $MAKEFILE
1793  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1794  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1795  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1796    echo >> $MAKEFILE
1797    echo '.SUFFIXES:' >> $MAKEFILE
1798    echo '.SUFFIXES: .o .F .p .'$FS' .c .F90 .'$FS90 >> $MAKEFILE
1799  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1800  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1801    
1802  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1803    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1804  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1805  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1806            @echo Creating \$@ ...
1807          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1808  depend:  depend:
1809          @make links          @make links
1810          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1811          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1812            -rm -f makedepend.out
1813    
1814  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1815    
1816  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1817    
# Line 1412  output.txt: \$(EXECUTABLE) Line 1820  output.txt: \$(EXECUTABLE)
1820          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1821    
1822  clean:  clean:
1823          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
1824  Clean:  Clean:
1825          @make clean          @make clean
1826          @make cleanlinks          @make cleanlinks
1827          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
1828            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1829  CLEAN:  CLEAN:
1830          @make Clean          @make Clean
1831          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1832          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1833          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1834          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1835    
1836  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1837  makefile:  makefile:
1838          ${0} $@          $THIS_SCRIPT $G2ARGS
1839  cleanlinks:  cleanlinks:
1840          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1841    
1842  # The normal chain of rules is (  .F - .f - .o  )  # Special targets ($SPECIAL_FILES) which are create by make
1843  .F.f:  ${PACKAGES_DOT_H}:
1844            @echo Creating \$@ ...
1845            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1846    AD_CONFIG.h:
1847            @echo Creating \$@ ...
1848            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1849    FC_NAMEMANGLE.h:
1850            @echo Creating \$@ ...
1851            echo "$FC_NAMEMANGLE" > \$@
1852    
1853    # The normal chain of rules is (  .F - .$FS - .o  )
1854    
1855    %.o : %.F
1856    
1857    .F.$FS:
1858          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1859  .f.o:  .$FS.o:
1860          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1861  .F90.f90:  .F90.$FS90:
1862          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1863  .f90.o:  .$FS90.o:
1864          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1865  .c.o:  .c.o:
1866          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1867    
1868  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
1869  .F.p:  .F.p:
1870          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1871  .p.f:  .p.$FS:
1872          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1873    
1874  #=========================================  #=========================================
# Line 1473  done Line 1895  done
1895    
1896  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1897  echo >> $MAKEFILE  echo >> $MAKEFILE
1898  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1899  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1900  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1901      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1902      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1903  done  done
1904  echo >> $MAKEFILE  echo >> $MAKEFILE
1905  rm -f ad_files  rm -f ad_files
# Line 1490  adtaf: ad_taf_output.f Line 1912  adtaf: ad_taf_output.f
1912  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1913    
1914  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1915            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1916          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1917            -rm -f ad_config.template
1918          @make \$(F77FILES)          @make \$(F77FILES)
1919          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1920          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1921    
1922  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1923          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1924          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1925    
1926  adtafonly:  adtafonly:
1927          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1928          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1929    
1930  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1931          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1932    
1933  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1934          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1935          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1936    
1937  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1938          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
# Line 1520  ftltaf: ftl_taf_output.f Line 1944  ftltaf: ftl_taf_output.f
1944  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1945    
1946  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1947            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1948          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1949            -rm -f ftl_config.template
1950          @make \$(F77FILES)          @make \$(F77FILES)
1951          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1952          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1953    
1954  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
1955          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1956          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1957    
1958    ftltafonly:
1959            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1960            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1961    
1962  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1963          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1964    
1965  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1966          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1967          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1968    
1969  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1970          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1971    
1972    
1973  # ... SVD ...  # ... SVD ...
1974  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
1975  svd_taf_f: svd_taf_output.f  svdall: svd_taf
   
 svd_input_code.f: \$(SRCFILES)  
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
1976    
1977  svd_taf: svd_taf_output.o \$(OBJFILES)  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1978          \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1979    
1980    
1981  #=========================================  #=========================================
# Line 1573  for i in $KPPFILES ; do Line 1993  for i in $KPPFILES ; do
1993      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
1994          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
1995      fi      fi
1996      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
1997  done  done
1998    
1999  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1583  for i in $NOOPTFILES ; do Line 2003  for i in $NOOPTFILES ; do
2003      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2004          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2005      fi      fi
2006      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2007      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2008  done  done
2009    
# Line 1596  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2016  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2016    
2017  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2018    
2019  #  Write the "template" files for the adjoint builds  # Create special header files
2020  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2021  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
2022  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2023  C    unless you are CERTAIN that you know what you are doing.  else
2024        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2025  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
2026  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
2027  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
2028  EOF      else
2029  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2030  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2031  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
2032  C    unless you are CERTAIN that you know what you are doing.  fi
2033    if test ! -f AD_CONFIG.h ; then
2034  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2035  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
2036    
2037    
2038  #  Write the "state" for future records  #  Write the "state" for future records
2039  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2040      echo -n "" > genmake_state      printf "" > genmake_state
2041      for i in $gm_state ; do      for i in $gm_state ; do
2042          t1="t2=\$$i"          t1="t2=\$$i"
2043          eval $t1          eval $t1

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