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revision 1.80 by edhill, Tue Jun 29 19:00:41 2004 UTC revision 1.253 by jmc, Wed Jul 24 00:33:53 2013 UTC
# Line 1  Line 1 
1  #! /usr/bin/env sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          return 1          exit 99
202      fi      fi
203      return 0      return 0
204  }  }
# Line 48  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 102  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 122  EOF Line 280  EOF
280        stop        stop
281        end        end
282  EOF  EOF
283      test -e Makefile  &&  mv -f Makefile Makefile.bak      test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284      cat <<EOF >> Makefile      cat <<EOF >> $MAKEFILE
 %.$tfs : %.F  
285  .SUFFIXES:  .SUFFIXES:
286  genmake_hello.$tfs: genmake_hello.F  .SUFFIXES: .$tfs .F
287          $LN genmake_hello.F genmake_hello.$tfs  .F.$tfs:
288            $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -e "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
294              FS='for'              FS='for'
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
307      fi      fi
308      rm -f genmake_hello.* Makefile      rm -f genmake_hello.* $MAKEFILE
309      test -e Makefile  &&  mv -f Makefile.bak Makefile      test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311      #  If we make it here, use the extensions      #  If we make it here, use the extensions
312      FS=$tfs      FS=$tfs
# Line 157  EOF Line 314  EOF
314      return      return
315  }  }
316    
317    look_for_makedepend()  {
 # Guess possible config options for this host  
 find_possible_configs()  {  
   
     tmp1=`uname`"_"`uname -m`  
     tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`  
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
320      #  most often distributed with XFree86 or with an XFree86 source      #  most often distributed with XFree86 or with an XFree86 source
# Line 196  find_possible_configs()  { Line 324  find_possible_configs()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
358        which makedepend > /dev/null 2>&1          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359        RV0=$?          #  echo 'MAKEFILE="'$MAKEFILE'"'
360        cat <<EOF >> genmake_tc.f          cat <<EOF >> $MAKEFILE
361    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362    #
363    #   Some "makedepend" implementations will die if they cannot
364    #   find a Makefile -- so this file is here to gives them an
365    #   empty one to find and parse.
366    EOF
367            cat <<EOF >> genmake_tc.f
368        program test        program test
369        write(*,*) 'test'        write(*,*) 'test'
370        stop        stop
371        end        end
372  EOF  EOF
373        makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374        RV1=$?          RV1=$?
375        if test ! "x${RV0}${RV1}" = x00 ; then          which makedepend > /dev/null 2>&1
376           echo "    a system-default makedepend was not found."          RV2=$?
377            if test "x${RV2}" = x0 ; then
378           #  Try to build the cyrus impl              makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379           rm -f ./genmake_cy_md              RV3=$? ; loc_msg='not working.'
380           (          else RV3=$RV2 ; loc_msg='not found.'
381               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          fi
382                   &&  ./configure > /dev/null 2>&1  \          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383                   &&  make > /dev/null 2>&1          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384               if test -x ./makedepend.exe ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385                   $LN ./makedepend.exe ./makedepend          if test "x${RV1}" = x0 ; then
386               fi              MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387               ./makedepend ifparser.c > /dev/null 2>&1  \              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388                   &&  echo "true"          elif test "x${RV3}" = x0 ; then
389           ) > ./genmake_cy_md              echo "    local tools/xmakedepend not working. Use system-default makedepend"
390           grep true ./genmake_cy_md > /dev/null 2>&1              MAKEDEPEND=makedepend
391           RETVAL=$?              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392           if test "x$RETVAL" = x0 ; then          else
393               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394           else              echo -n "    Try to build cyrus-makedepend ..."
395               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'              #  Try to build the cyrus implementation
396           fi              build_cyrus_makedepend
397           rm -f ./genmake_cy_md              RETVAL=$?
398        fi              if test "x$RETVAL" = x0 ; then
399                    echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406                fi
407            fi
408      fi      fi
409    }
410    
411      # look for possible fortran compilers  build_cyrus_makedepend()  {
412      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
413      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
414        rm -f ./genmake_cy_md
415        (
416            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417                &&  ./configure > /dev/null 2>&1  \
418                &&  $MAKE > /dev/null 2>&1
419            if test -x ./makedepend.exe ; then
420                $LN ./makedepend.exe ./makedepend
421            fi
422            ./makedepend ifparser.c > /dev/null 2>&1  \
423                &&  echo "true"
424        ) > ./genmake_cy_md
425        grep true ./genmake_cy_md > /dev/null 2>&1
426        RETVAL=$?
427        rm -f ./genmake_cy_md
428        if test "x$RETVAL" = x0 ; then
429            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431            return 0
432        else
433            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434            return 1
435        fi
436    }
437    
438    build_embed_encode()
439    {
440        printf "  building the embed-encode utility...  "
441        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443                echo
444                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445                echo
446                EMBED_SRC=f
447                return 1
448            fi
449            clist="cc gcc c89 $CC"
450            for ic in $clist ; do
451                comm="$ic -o encode_files encode_files.c"
452                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453                RETVAL=$?
454                if test "x$RETVAL" = x0 ; then
455                    echo "OK"
456                    return 0
457                fi
458            done
459            echo
460            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
461            echo "      so it has been disabled"
462            echo
463            EMBED_SRC=f
464            return 1
465        fi
466        echo "OK"
467    }
468    
469    #  look for possible C compilers
470    look_for_C_compilers() {
471        echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473        rm -f ./genmake_hello.c  ./genmake_hello
474        cat >> genmake_hello.c << EOF
475    #include <stdio.h>
476    int main(int argc, char **argv) {
477      printf("Hello!\n");
478      return 0;
479    }
480    EOF
481        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483      for c in $tmp ; do      for c in $tmp ; do
484          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487            RETVAL=$?
488            if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490                p_CC="$p_CC $c"
491            fi
492        done
493        rm -f ./genmake_hello.c ./genmake_hello
494        if test "x${p_CC}" = x ; then
495            cat 1>&2 <<EOF
496    
497    Error: No C compilers were found in your path.  Please specify one using:
498    
499        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
500        2) the CC or MITGCM_CC environment variables.
501    
502    EOF
503            exit 1
504        else
505            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
506            if test "x$CC" = x ; then
507                CC=`echo $p_CC | $AWK '{print $1}'`
508                echo "  Setting C compiler to: "$CC
509            fi
510        fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530        #================================================================
531        #  look for possible FORTRAN compilers
532        echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534        p_FC=
535        rm -f ./genmake_hello.f
536        cat >> genmake_hello.f <<EOF
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 269  Error: No Fortran compilers were found i Line 558  Error: No Fortran compilers were found i
558    
559      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
560      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
561      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
562    
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
567          echo "   "$p_FC      fi
568          if test "x$FC" = x ; then  
569              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
570              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
571          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
572            for i in $p_FC ; do
573                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574                if test -r $OPTFILE ; then
575                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                    break
577                fi
578            done
579      fi      fi
580    
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 314  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        rm -rf ./mpi_headers
611        if test -d $MPIINCLUDEDIR ; then
612    
613            #----- check for additional headers (chain of included headers)
614            echo -n '  Check MPI headers ... '
615            listIni=$MPI_HEADER_FILES
616            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617            outp=$?
618            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621    
622            doCheck=1 ; list2copy='' ; list2check=$listIni
623            while test $doCheck = 1 ; do
624              newList=''
625              for i in $list2check ; do
626                if test -f $MPIINCLUDEDIR/$i ; then
627                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630                  for j in $newInc ; do
631                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648            #----- create local mpi_headers dir if we have files to copy
649            mkListInc=`echo $list2copy | wc -w`
650            if test $mkListInc != 0 ; then
651              echo 'create local "./mpi_headers" dir'
652              mkdir -p ./mpi_headers
653              INCLUDES="-I./mpi_headers $INCLUDES"
654              mkListInc=1
655            fi
656            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657    
658            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659            for i in $list2copy ; do
660              if test -f $MPIINCLUDEDIR/$i ; then
661                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662                if test $i = 'mpif.h' ; then
663                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664                fi
665                if test $mkListInc = 2 ; then
666                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667                fi
668                if test $mkListInc = 1 ; then
669                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670                fi
671              fi
672            done
673        else
674            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678  }  }
679    
680  #  Parse the package dependency information  #  Parse the package dependency information
# Line 352  get_pdepend_list()  { Line 683  get_pdepend_list()  {
683      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
684      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
685      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
686          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
687          > ./.pd_tmp          > ./.pd_tmp
688        RETVAL=$?
689        if test ! "x${RETVAL}" = x0 ; then
690          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
691          exit 1
692        fi
693      . ./.pd_tmp      . ./.pd_tmp
694      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from $PATH/include, link to libraries  
           from $PATH/lib and use binaries from $PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
695  }  }
696    
697  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
698  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
699    
700        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701        if test ! "x$FC_NAMEMANGLE" = x ; then
702            return 0
703        fi
704        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705    
706      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
707        
708      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
709  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
710  EOF  EOF
711      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
712        echo ' '$COMM >> $LOGFILE
713        $COMM >> $LOGFILE 2>&1
714      RETVAL=$?      RETVAL=$?
715      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
716          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
717          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
718    
719  WARNING: C test compile fails   WARNING: C test compile fails
720  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
721  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
722  EOF  EOF
723          return 1          return 1
724      fi      fi
725      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
726      RETVAL=$?      RETVAL=$?
727      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
728          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
729          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
730    
731  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
732  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
734  EOF  EOF
735          return 1          return 1
736      fi      fi
737      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
738        subroutine tcall( string )        subroutine tcall( string )
739        character*(*) string        character*(*) string
740        call tsub( string )        call tsub( string )
741        end        end
742  EOF  EOF
743      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
744        echo ' '$COMM >> $LOGFILE
745        $COMM >> $LOGFILE 2>&1
746      RETVAL=$?      RETVAL=$?
747      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
748          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
749          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
750    
751  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
752  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
753  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
754  EOF  EOF
755          return 1          return 1
756      fi      fi
757      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
758      RETVAL=$?      RETVAL=$?
759      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
760          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
761          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
762    
763  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
764  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
765  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
766  EOF  EOF
767          return 1          return 1
768      fi      fi
# Line 556  EOF Line 788  EOF
788    
789      #  cleanup the testing files      #  cleanup the testing files
790      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
791    
792        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
793    }
794    
795  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
796        echo >> $LOGFILE
797        echo "running: check_HAVE_CLOC()" >> $LOGFILE
798      get_fortran_c_namemangling      get_fortran_c_namemangling
799      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
800  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 576  void FC_NAMEMANGLE(cloc) ( double *curti Line 811  void FC_NAMEMANGLE(cloc) ( double *curti
811   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
812  }  }
813  EOF  EOF
814      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
815        echo $COMM >> $LOGFILE
816        $COMM >> $LOGFILE 2>&1
817      RET_C=$?      RET_C=$?
818      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
819        program hello        program hello
820        Real*8 wtime        REAL*8 wtime
821        external cloc        external cloc
822        call cloc(wtime)        call cloc(wtime)
823        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
824        end program hello        end
825  EOF  EOF
826      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
827        echo $COMM >> $LOGFILE
828        $COMM >> $LOGFILE 2>&1
829      RET_F=$?      RET_F=$?
830      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
831      RETVAL=$?      RETVAL=$?
832      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
833          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
834      fi      fi
835      rm -f genmake_tc*      rm -f genmake_tc*
836        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
837  }  }
838    
839    check_HAVE_SIGREG()  {
840        if test ! "x$HAVE_SIGREG" = x ; then
841            return
842        fi
843        echo >> $LOGFILE
844        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
845        get_fortran_c_namemangling
846        cat <<EOF > genmake_tc_1.c
847    $FC_NAMEMANGLE
848    #include <stdlib.h>
849    #include <stdio.h>
850    #include <signal.h>
851    #include <errno.h>
852    #include <ucontext.h>
853    
854    int * ip;
855    
856    static void killhandler(
857        unsigned int sn, siginfo_t  si, struct ucontext *sc )
858    {
859        *ip = *ip + 1;
860        return;
861    }
862    
863    void FC_NAMEMANGLE(sigreg) (int * aip)
864    {
865        struct sigaction s;
866        ip = aip;
867        s.sa_flags = SA_SIGINFO;
868        s.sa_sigaction = (void *)killhandler;
869        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
870            printf("Sigaction returned error = %d\n", errno);
871            exit(0);
872        }
873        return;
874    }
875    EOF
876        COMM="$CC $CFLAGS -c genmake_tc_1.c"
877        echo $COMM >> $LOGFILE
878        $COMM >> $LOGFILE 2>&1
879        RET_C=$?
880        cat <<EOF > genmake_tc_2.$FS
881          program hello
882          integer anint
883          common /iv/ anint
884          external sigreg
885          call sigreg(anint)
886          end
887    EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> $LOGFILE 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_SIGREG=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
898    }
899    
900    check_HAVE_SETRLSTK()  {
901        if test ! "x$HAVE_SETRLSTK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
906        get_fortran_c_namemangling
907        cat <<EOF > genmake_tc_1.c
908    $FC_NAMEMANGLE
909    #include <sys/time.h>
910    #include <sys/resource.h>
911    #include <unistd.h>
912    void FC_NAMEMANGLE(setrlstk) ()
913    {
914        struct rlimit rls;
915        rls.rlim_cur = RLIM_INFINITY;
916        rls.rlim_max = RLIM_INFINITY;
917        setrlimit(RLIMIT_STACK, &rls);
918        return;
919    }
920    EOF
921        COMM="$CC $CFLAGS -c genmake_tc_1.c"
922        echo $COMM >> $LOGFILE
923        $COMM >> $LOGFILE 2>&1
924        RET_C=$?
925        cat <<EOF > genmake_tc_2.$FS
926          program hello
927          external setrlstk
928          call setrlstk()
929          end
930    EOF
931        cat genmake_tc_2.$FS >> $LOGFILE
932        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933        echo $COMM >> $LOGFILE
934        $COMM >> $LOGFILE 2>&1
935        RETVAL=$?
936        if test "x$RETVAL" = x0 ; then
937            HAVE_SETRLSTK=t
938        fi
939        rm -f genmake_tc*
940        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
941    }
942    
943    check_HAVE_STAT()  {
944        echo >> $LOGFILE
945        echo "running: check_HAVE_STAT()" >> $LOGFILE
946        get_fortran_c_namemangling
947        cat <<EOF > genmake_tc_1.c
948    $FC_NAMEMANGLE
949    #include <stdio.h>
950    #include <stdlib.h>
951    #include <unistd.h>
952    #include <sys/stat.h>
953    #include <sys/types.h>
954    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
955    {
956        char name[512];
957        struct stat astat;
958    
959        name[0] = 'a'; name[1] = '\0';
960        if (! stat(name, &astat))
961            *nbyte = (int)(astat.st_size);
962        else
963            *nbyte = -1;
964    }
965    EOF
966        COMM="$CC $CFLAGS -c genmake_tc_1.c"
967        echo $COMM >> $LOGFILE
968        $COMM >> genmake_tc.log 2>&1
969        RET_C=$?
970        cat <<EOF > genmake_tc_2.$FS
971          program hello
972          integer nbyte
973          call tfsize(nbyte)
974          print *," HELLO WORLD", nbyte
975          end
976    EOF
977        cat genmake_tc_2.$FS >> $LOGFILE
978        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
979        echo $COMM >> $LOGFILE
980        $COMM >> genmake_tc.log 2>&1
981        RETVAL=$?
982        if test "x$RETVAL" = x0 ; then
983            HAVE_STAT=t
984        fi
985        rm -f genmake_tc*
986        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
987    }
988    
989  check_netcdf_libs()  {  check_netcdf_libs()  {
990      cat <<EOF > genmake_tnc.for      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
991            return
992        fi
993        echo >> $LOGFILE
994        echo "running: check_netcdf_libs()" >> $LOGFILE
995        cat <<EOF > genmake_tnc.F
996        program fgennc        program fgennc
997  #include "netcdf.inc"  #include "netcdf.inc"
998    EOF
999       #if test ! "x$MPI" = x ; then
1000       #    echo '#include "mpif.h"' >> genmake_tnc.F
1001       #fi
1002        cat <<EOF >> genmake_tnc.F
1003        integer iret, ncid, xid        integer iret, ncid, xid
1004        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1005        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 611  check_netcdf_libs()  { Line 1009  check_netcdf_libs()  {
1009        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010        end        end
1011  EOF  EOF
1012      $CPP genmake_tnc.for > genmake_tnc.f  \      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1013          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
1014        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1015        RET_CPP=f
1016        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1017        echo "$COMM" >> genmake_tnc.log
1018        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1019        if test "x$RET_CPP" = xf ; then
1020            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1021                >> genmake_tnc.log
1022            echo "    Please check that \$INCLUDES is properly set." \
1023                >> genmake_tnc.log
1024        fi
1025        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1026        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1027        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1028            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1029      RET_COMPILE=$?      RET_COMPILE=$?
1030      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> $LOGFILE
1031      RETVAL=$?  
1032      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
1033        #EH3  execution or cannot support it (eg. cross-compilers)
1034        #EH3
1035        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1036        #EH3 RETVAL=$?
1037        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1038    
1039        if test "x$RET_COMPILE" = x0 ; then
1040          HAVE_NETCDF=t          HAVE_NETCDF=t
1041            echo "check_netcdf: successful" >> $LOGFILE
1042      else      else
1043          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1044          $CPP genmake_tnc.for > genmake_tnc.f  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1045              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1046              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1047            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1048            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1049                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1050                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1051          RET_COMPILE=$?          RET_COMPILE=$?
1052          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          echo >> $LOGFILE
1053          RETVAL=$?          cat genmake_tnc.log >> $LOGFILE
1054          if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1055              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1056              HAVE_NETCDF=t              HAVE_NETCDF=t
1057                echo "check_netcdf: successful" >> $LOGFILE
1058          else          else
1059              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
1060                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1061                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1062                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1063                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1064                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1065                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1066                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1067                RET_COMPILE=$?
1068                echo >> $LOGFILE
1069                cat genmake_tnc.log >> $LOGFILE
1070                if test "x$RET_COMPILE" = x0 ; then
1071                    LIBS="$LIBS -lnetcdff -lnetcdf"
1072                    HAVE_NETCDF=t
1073                    echo "check_netcdf: successful" >> $LOGFILE
1074                fi
1075          fi          fi
1076      fi      fi
1077      rm -f genmake_tnc*      rm -f genmake_tnc*
1078        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1079    }
1080    
1081    check_lapack_libs()  {
1082        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1083            return
1084        fi
1085        echo >> $LOGFILE
1086        echo "running: check_lapack_libs()" >> $LOGFILE
1087        cat <<EOF > genmake_tla.F
1088          program fgenla
1089          integer info
1090          integer ipiv( 2 )
1091          double precision ab( 4, 2 ), b( 2 )
1092          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1093          data b / 1., 1. /
1094          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1095          IF (info .NE. 0) write(*,*) 'Error:', info
1096          write(*,*) b
1097          end
1098    EOF
1099        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1100        cat genmake_tla.F >> genmake_tla.log
1101        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1102        RET_CPP=f
1103        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1104        echo "$COMM" >> genmake_tla.log
1105        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1106        if test "x$RET_CPP" = xf ; then
1107            echo "  WARNING: CPP failed to pre-process the lapack test." \
1108                >> genmake_tla.log
1109            echo "    Please check that \$INCLUDES is properly set." \
1110                >> genmake_tla.log
1111        fi
1112        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1113        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1114        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1115            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1116        RET_COMPILE=$?
1117        cat genmake_tla.log >> $LOGFILE
1118    
1119        # test program execution not always possible (see check_netcdf_libs)
1120        #
1121        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1122        #RETVAL=$?
1123        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1124    
1125        if test "x$RET_COMPILE" = x0 ; then
1126            HAVE_LAPACK=t
1127            echo "check_lapack: successful" >> $LOGFILE
1128        else
1129            # try again with "-llapack" added to the libs
1130            echo "==> try again with added '-llapack'" > genmake_tla.log
1131            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1132            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1133            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1134            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1135                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1136                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1137            RET_COMPILE=$?
1138            echo >> $LOGFILE
1139            cat genmake_tla.log >> $LOGFILE
1140            if test "x$RET_COMPILE" = x0 ; then
1141                LIBS="$LIBS -llapack"
1142                HAVE_LAPACK=t
1143                echo "check_lapack: successful" >> $LOGFILE
1144            else
1145            # try again with "-lf77blas -lcblas" added to the libs
1146                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1147                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1148                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1149                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1150                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1151                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1152                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1153                RET_COMPILE=$?
1154                echo >> $LOGFILE
1155                cat genmake_tla.log >> $LOGFILE
1156                if test "x$RET_COMPILE" = x0 ; then
1157                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1158                    HAVE_LAPACK=t
1159                    echo "check_lapack: successful" >> $LOGFILE
1160                else
1161                # try again with "-latlas" added to the libs
1162                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1167                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1168                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169                    RET_COMPILE=$?
1170                    echo >> $LOGFILE
1171                    cat genmake_tla.log >> $LOGFILE
1172                    if test "x$RET_COMPILE" = x0 ; then
1173                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174                        HAVE_LAPACK=t
1175                        echo "check_lapack: successful" >> $LOGFILE
1176                    fi
1177                fi
1178            fi
1179        fi
1180        rm -f genmake_tla*
1181        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182  }  }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224  ###############################################################################  ###############################################################################
1225  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 649  PLATFORM= Line 1232  PLATFORM=
1232  LN=  LN=
1233  S64=  S64=
1234  KPP=  KPP=
1235  FC=  #FC=
1236  CPP=  #CC=gcc
1237    #CPP=
1238  LINK=  LINK=
1239  DEFINES=  DEFINES=
1240  PACKAGES=  PACKAGES=
1241  ENABLE=  ENABLE=
1242  DISABLE=  DISABLE=
1243  MAKEFILE=  # MAKEFILE=
1244  MAKEDEPEND=  # MAKEDEPEND=
1245  PDEPEND=  PKG_DEPEND=
1246  DUMPSTATE=t  PKG_GROUPS=
1247  PDEFAULT=  DUMPSTATE=f
1248  OPTFILE=  OPTFILE=
1249  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1250  FFLAGS=  FFLAGS=
1251  FOPTIM=  FOPTIM=
1252    FEXTRAFLAGS=
1253    USE_EXTENDED_SRC=
1254    EXTENDED_SRC_FLAG=
1255    GET_FC_VERSION=
1256  CFLAGS=  CFLAGS=
1257  KFLAGS1=  KFLAGS1=
1258  KFLAGS2=  KFLAGS2=
# Line 675  NOOPTFILES= Line 1263  NOOPTFILES=
1263  NOOPTFLAGS=  NOOPTFLAGS=
1264  MPI=  MPI=
1265  MPIPATH=  MPIPATH=
1266    OMP=
1267    OMPFLAG=
1268    USE_R4=
1269    TS=
1270    PAPIS=
1271    PCLS=
1272    FOOLAD=
1273    PAPI=
1274    PCL=
1275    HPMT=
1276    GSL=
1277    DEVEL=
1278    HAVE_TEST_L=
1279    
1280  # DEFINES checked by test compilation  # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283    # DEFINES checked by test compilation or command-line
1284  HAVE_SYSTEM=  HAVE_SYSTEM=
1285  HAVE_FDATE=  HAVE_FDATE=
1286  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1287  HAVE_CLOC=  HAVE_CLOC=
1288    # HAVE_SETRLSTK=
1289    HAVE_STAT=
1290  HAVE_NETCDF=  HAVE_NETCDF=
1291    HAVE_ETIME=
1292    IGNORE_TIME=
1293    HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
# Line 689  SOURCEDIRS= Line 1299  SOURCEDIRS=
1299  INCLUDEDIRS=  INCLUDEDIRS=
1300  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1301    
1302    #- local config file
1303    gm_local="genmake_local"
1304    
1305  G2ARGS=  G2ARGS=
1306  BASH=  BASH=
1307  PWD=`pwd`  PWD=`pwd`
1308  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1309  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1310  THISHOSTNAME=`hostname`  EMBED_SRC=
1311    THISHOST=`hostname`
1312  THISCWD=`pwd`  THISCWD=`pwd`
1313  THISDATE=`date`  THISDATE=`date`
1314    THISUSER=`echo $USER`
1315    THISVER=
1316  MACHINE=`uname -a`  MACHINE=`uname -a`
1317  EXECUTABLE=  EXECUTABLE=
1318  EXEHOOK=  EXEHOOK=
1319  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1320  IEEE=  IEEE=
1321  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1322      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 722  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349    
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1364    
1365  cat <<EOF  cat <<EOF
1366    
1367  GENMAKE :  GENMAKE :
1368    
1369  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1370  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1371    or for more detail see the Developer's HOWTO manual at:
1372    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1373    
1374  EOF  EOF
1375    
1376    LOGFILE="genmake.log"
1377    #- clean-up previous genmake logfiles:
1378    rm -f genmake_state genmake_*optfile $LOGFILE
1379    
1380  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1381    
1382  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1383  #parse_options  #parse_options
1384  ac_prev=  ac_prev=
1385  for ac_option ; do  for ac_option in "$@" ; do
1386    
1387      G2ARGS="$G2ARGS \"$ac_option\""      G2ARGS="$G2ARGS \"$ac_option\""
1388    
# Line 793  for ac_option ; do Line 1392  for ac_option ; do
1392          ac_prev=          ac_prev=
1393          continue          continue
1394      fi      fi
1395        
1396      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397        
1398      case $ac_option in      case $ac_option in
1399            
1400          -help | --help | -h | --h)          -help | --help | -h | --h)
1401              usage ;;              usage ;;
1402            
1403          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1404              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1405          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1406              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1407          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1408              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1409            
1410          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1411              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1412          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1414            
1415          -pdepend | --pdepend)          -pdepend | --pdepend)
1416              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1417          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1418              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1419            
1420          -pdefault | --pdefault)          -pgroups | --pgroups)
1421              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1422          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1423              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1424            
1425          -make | --make | -m | --m)          -make | --make | -m | --m)
1426              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1427          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1428              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1429            
1430          -bash | --bash)          -bash | --bash)
1431              ac_prev=BASH ;;              ac_prev=BASH ;;
1432          -bash=* | --bash=*)          -bash=* | --bash=*)
1433              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1434            
1435          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1436              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1437          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1438              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1439            
1440          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1441              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1442          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1443              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1444            
1445          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1447              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1448              echo              echo
1449              usage              usage
1450              ;;              ;;
1451            
1452          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1453              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1454          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1456            
1457          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1458              ac_prev=MODS ;;              ac_prev=MODS ;;
1459          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1460              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1461            
1462          -disable | --disable)          -disable | --disable)
1463              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1464          -disable=* | --disable=*)          -disable=* | --disable=*)
1465              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1466            
1467          -enable | --enable)          -enable | --enable)
1468              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1469          -enable=* | --enable=*)          -enable=* | --enable=*)
1470              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1471            
1472          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1473              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1474          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 879  for ac_option ; do Line 1478  for ac_option ; do
1478  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1479  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1480  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1481                
1482            -cc | --cc)
1483                ac_prev=CC ;;
1484            -cc=* | --cc=*)
1485                CC=$ac_optarg ;;
1486    
1487          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1488              ac_prev=FC ;;              ac_prev=FC ;;
1489          -fc=* | --fc=*)          -fc=* | --fc=*)
1490              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1491            
1492          -fs | --fs)          -fs | --fs)
1493              ac_prev=FS ;;              ac_prev=FS ;;
1494          -fs=* | --fs=*)          -fs=* | --fs=*)
1495              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1496            
1497          -fs90 | --fs90)          -fs90 | --fs90)
1498              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1499          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1500              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1501            
1502            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503                USE_R4=true ;;
1504    
1505          -ieee | --ieee)          -ieee | --ieee)
1506              IEEE=true ;;              IEEE=true ;;
1507          -noieee | --noieee)          -noieee | --noieee)
1508              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509            -devel | --devel)
1510                IEEE=true ; DEVEL=true ;;
1511            -gsl | --gsl)
1512                GSL=true ;;
1513    
1514            -ts | --ts)
1515                TS=true ;;
1516            -papis | --papis)
1517                PAPIS=true ;;
1518            -pcls | --pcls)
1519                PCLS=true ;;
1520            -foolad | --foolad)
1521                FOOLAD=true ;;
1522            -papi | --papi)
1523                PAPI=true ;;
1524            -pcl | --pcl)
1525                PCL=true ;;
1526            -hpmt | --hpmt)
1527                HPMT=true ;;
1528    
1529          -mpi | --mpi)          -mpi | --mpi)
1530              MPI=true ;;              MPI=true ;;
1531          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1532              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1533              MPI=true ;;              MPI=true ;;
1534            
1535  #       -jam | --jam)          -omp | --omp)
1536  #           JAM=1 ;;              OMP=true ;;
1537  #       -nojam | --nojam)          -omp=* | --omp=*)
1538  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1539                        OMP=true ;;
1540    
1541          -ds | --ds)          -ds | --ds)
1542              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1543            
1544            -extra_flag | --extra_flag)
1545                ac_prev=FEXTRAFLAGS ;;
1546            -extra_flag=* | --extra_flag=*)
1547                FEXTRAFLAGS=$ac_optarg ;;
1548    
1549          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1550              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1551          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 924  for ac_option ; do Line 1556  for ac_option ; do
1556          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1557              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1558    
1559            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560                IGNORE_TIME="-DIGNORE_TIME" ;;
1561    
1562            -es | --es | -embed-source | --embed-source)
1563                EMBED_SRC=t ;;
1564    
1565          -*)          -*)
1566              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1567              usage              usage
1568              ;;              ;;
1569            
1570          *)          *)
1571              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575      esac      esac
1576        
1577  done  done
1578    
1579    printf "  getting local config information:  "
1580    if test -f $gm_local ; then
1581        echo "using $gm_local"
1582        . $gm_local
1583    else
1584        echo "none found"
1585    fi
1586    
1587  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1588      echo      echo
1589      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1590      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1591      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1592      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1593        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1594        echo "WARNING: ignore \"./.genmakerc\" and continue."
1595      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1596  fi  fi
1597    
1598    #  Find the MITgcm ${ROOTDIR}
1599  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1600      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1601        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1602          ROOTDIR=".."          ROOTDIR=".."
1603      else      else
1604          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1605              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1606                  ROOTDIR=$d                  ROOTDIR=$d
1607                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1608                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1609                  break                  break
1610              fi              fi
1611          done          done
# Line 975  if test ! -d ${ROOTDIR} ; then Line 1622  if test ! -d ${ROOTDIR} ; then
1622      exit 1      exit 1
1623  fi  fi
1624    
1625  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1626    version_file="${ROOTDIR}/doc/tag-index"
1627    if test -f $version_file ; then
1628        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1629    #-  remove ./BUILD_INFO.h file if older than version_file
1630        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1631            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1632            rm -f ./BUILD_INFO.h
1633        fi
1634    fi
1635    
1636    if test "x$MAKEFILE" = x ; then
1637        MAKEFILE="Makefile"
1638    fi
1639    
1640    echo "  getting OPTFILE information:"
1641  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1642      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1643          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1644          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1645          find_possible_configs          find_possible_optfile
1646      else      else
1647          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1648      fi      fi
# Line 995  if test "x$OPTFILE" != xNONE ; then Line 1657  if test "x$OPTFILE" != xNONE ; then
1657              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1658              exit 1              exit 1
1659          fi          fi
1660          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1661              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1662          fi          fi
1663      else      else
# Line 1004  if test "x$OPTFILE" != xNONE ; then Line 1666  if test "x$OPTFILE" != xNONE ; then
1666      fi      fi
1667  fi  fi
1668    
1669  #  Check for broken systems that cannot correctly distinguish *.F and *.f files  echo "  getting AD_OPTFILE information:"
 # check_for_broken_Ff  
   
 echo "  getting AD_OPTFILE information:  "  
1670  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1671      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1672          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1025  if test "x${AD_OPTFILE}" != xNONE ; then Line 1684  if test "x${AD_OPTFILE}" != xNONE ; then
1684              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1685              exit 1              exit 1
1686          fi          fi
1687          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1688              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1689          fi          fi
1690      else      else
# Line 1034  if test "x${AD_OPTFILE}" != xNONE ; then Line 1693  if test "x${AD_OPTFILE}" != xNONE ; then
1693      fi      fi
1694  fi  fi
1695    
1696  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1697    #  Set default values if not set by the optfile
1698    #
1699    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1700  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1701  if test ! "x$BASH" = x ; then  if test ! "x$BASH" = x ; then
1702      # add a trailing space so that it works within the Makefile syntax (see below)      # add a trailing space so that it works within the Makefile syntax (see below)
# Line 1050  Error: no Fortran compiler: please speci Line 1712  Error: no Fortran compiler: please speci
1712  EOF  EOF
1713      exit 1      exit 1
1714  fi  fi
1715    if test "x$GET_FC_VERSION" != x ; then
1716      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1717      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1718      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1719      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1720      if test -s genmake_fc_vers1 ; then
1721        cat genmake_fc_vers1 >> $LOGFILE
1722      else
1723        cat genmake_fc_vers2 >> $LOGFILE
1724      fi
1725      echo "<-- compiler version ----" >> $LOGFILE
1726      rm -f genmake_fc_vers1 genmake_fc_vers2
1727    fi
1728    
1729    if test "x$CC" = x ; then
1730        look_for_C_compilers
1731    fi
1732    
1733  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1734      LINK=$FC      LINK=$FC
1735  fi  fi
# Line 1057  if test "x$MAKE" = x ; then Line 1737  if test "x$MAKE" = x ; then
1737      MAKE="make"      MAKE="make"
1738  fi  fi
1739  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1740      CPP=cpp      CPP="cpp -traditional -P"
1741  fi  fi
1742  #EH3 === UGLY ===  #EH3 === UGLY ===
1743  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1084  EOF Line 1764  EOF
1764  else  else
1765      rm -f test_cpp      rm -f test_cpp
1766  fi  fi
1767  if test "x$MAKEDEPEND" = x ; then  
1768      MAKEDEPEND=makedepend  look_for_makedepend
1769  fi  
1770    #  Check that soft-link command is set and usable
1771  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1772      LN="ln -s"      LN="ln -s"
1773  fi  fi
# Line 1096  RETVAL=$? Line 1777  RETVAL=$?
1777  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1778      cat <<EOF 1>&2      cat <<EOF 1>&2
1779    
1780  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1781    command in the optfile.    command in the optfile.
1782    
1783  EOF  EOF
1784      exit 1      exit 1
1785  fi  fi
1786    test -L genmake_tlink > /dev/null 2>&1
1787    RETVAL=$?
1788    if test "x$RETVAL" = x0 ; then
1789        HAVE_TEST_L=t
1790    fi
1791  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1792    
1793  #  Check for broken *.F/*.f handling and fix if possible  #  Check for broken *.F/*.f handling and fix if possible
# Line 1109  check_for_broken_Ff Line 1795  check_for_broken_Ff
1795    
1796  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1797        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1798        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1799    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1800    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1801    fi
1802    if test ! "x$OMP" = x ; then
1803          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1804          FFLAGS="$FFLAGS $OMPFLAG"
1805          F90FLAGS="$F90FLAGS $OMPFLAG"
1806          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1807    fi
1808    
1809    if test ! "x$USE_R4" = x ; then
1810          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1811          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1812    fi
1813    
1814    if test ! "x$TS" = x ; then
1815          echo "  Turning on timing per timestep"
1816          if test ! "x$FOOLAD" = x ; then
1817                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1818          else
1819                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1820          fi
1821          PACKAGES="$PACKAGES showflops"
1822    fi
1823    if test ! "x$PAPIS" = x ; then
1824          echo "  Turning on PAPI flop summary per timestep"
1825          echo "  Please make sure PAPIINC, PAPILIB are defined"
1826          if test ! "x$FOOLAD" = x ; then
1827                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1828          else
1829                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1830          fi
1831          INCLUDES="$INCLUDES $PAPIINC"
1832          LIBS="$LIBS $PAPILIB"
1833          PACKAGES="$PACKAGES showflops"
1834    fi
1835    if test ! "x$PCLS" = x ; then
1836          echo "  Turning on PCL counter summary per timestep"
1837          echo "  Please make sure PCLINC, PCLLIB are defined"
1838          if test ! "x$FOOLAD" = x ; then
1839                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1840          else
1841                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1842          fi
1843          INCLUDES="$INCLUDES $PCLINC"
1844          LIBS="$LIBS $PCLLIB"
1845          PACKAGES="$PACKAGES showflops"
1846    fi
1847    if test ! "x$PAPI" = x ; then
1848          if test ! "x$PAPIS" = x ; then
1849              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1850              echo "  Sticking with PAPI flop summary per timestep!"
1851          else
1852              echo "  Turning on performance analysis with PAPI"
1853              echo "  Please make sure PAPIINC, PAPILIB are defined"
1854              DEFINES="$DEFINES -DUSE_PAPI"
1855              INCLUDES="$INCLUDES $PAPIINC"
1856              LIBS="$LIBS $PAPILIB"
1857          fi
1858    fi
1859    if test ! "x$PCL" = x ; then
1860          if test ! "x$PCLS" = x ; then
1861              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1862              echo "  Sticking with PCL flop summary per timestep!"
1863          else
1864              echo "  Turning on performance analysis with PCL"
1865              echo "  Please make sure PCLINC, PCLLIB are defined"
1866              DEFINES="$DEFINES -DUSE_PCL"
1867              INCLUDES="$INCLUDES $PCLINC"
1868              LIBS="$LIBS $PCLLIB"
1869          fi
1870    fi
1871    if test ! "x$HPMT" = x ; then
1872          if test ! "x$PAPI" = x ; then
1873              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1874              echo "  Sticking with PAPI!"
1875          else
1876            if test ! "x$PCL" = x ; then
1877              echo "  PCL and the HPM Toolkit cannot co-exist!"
1878              echo "  Sticking with PCL!"
1879            else
1880              echo "  Turning on performance analysis with the HPM Toolkit"
1881              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1882              DEFINES="$DEFINES -DUSE_LIBHPM"
1883              INCLUDES="$INCLUDES $HPMTINC"
1884              LIBS="$LIBS $HPMTLIB"
1885            fi
1886          fi
1887    fi
1888    if test ! "x$GSL" = x ; then
1889          echo "  Turning on use of GSL to control floating point calculations"
1890          echo "  Please make sure GSLINC, GSLLIB are defined"
1891          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1892          INCLUDES="$INCLUDES $GSLINC"
1893          LIBS="$LIBS $GSLLIB"
1894    fi
1895    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1896    if test ! "x$USE_EXTENDED_SRC" = x ; then
1897          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1898          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1899  fi  fi
1900    
1901  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1902  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1903  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1904        program hello        program hello
1905        call system('echo hi')        call system('echo hi')
1906        end        end
1907  EOF  EOF
1908  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1909  RETVAL=$?  RETVAL=$?
1910  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1911      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 1132  fi Line 1918  fi
1918  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1919    
1920  printf "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1921  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1922        program hello        program hello
1923        CHARACTER(128) string        CHARACTER*(128) string
1924        string = ' '        string = ' '
1925        call fdate( string )        call fdate( string )
1926        print *, string        print *, string
1927        end        end
1928  EOF  EOF
1929  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1930  RETVAL=$?  RETVAL=$?
1931  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1932      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1152  else Line 1938  else
1938  fi  fi
1939  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1940    
1941    printf "  Do we have the etime() command using $FC...  "
1942    cat > genmake_tcomp.$FS <<EOF
1943          program hello
1944          REAL*4 ACTUAL, TARRAY(2)
1945          EXTERNAL ETIME
1946          REAL*4 ETIME
1947          actual = etime( tarray )
1948          print *, tarray
1949          end
1950    EOF
1951    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1952    RETVAL=$?
1953    if test "x$RETVAL" = x0 ; then
1954        HAVE_ETIME=t
1955        DEFINES="$DEFINES -DHAVE_ETIME"
1956        echo "yes"
1957    else
1958        HAVE_ETIME=
1959        echo "no"
1960    fi
1961    rm -f genmake_tcomp*
1962    
1963  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1964  check_HAVE_CLOC  check_HAVE_CLOC
1965  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1966        DEFINES="$DEFINES -DHAVE_CLOC"
1967        echo "yes"
1968    else
1969        echo "no"
1970        if test "x$EMBED_SRC" = xt ; then
1971            echo "    WARNING: you requested file embedding but it has"
1972            echo "      been disabled since C code cannot be called"
1973            EMBED_SRC=
1974        fi
1975    fi
1976    rm -f genmake_t*
1977    
1978    printf "  Can we unlimit the stack size using $FC...  "
1979    check_HAVE_SETRLSTK
1980    if test "x$HAVE_SETRLSTK" = xt ; then
1981        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1982        echo "yes"
1983    else
1984        echo "no"
1985    fi
1986    rm -f genmake_t*
1987    
1988    printf "  Can we register a signal handler using $FC...  "
1989    check_HAVE_SIGREG
1990    if test "x$HAVE_SIGREG" = xt ; then
1991        DEFINES="$DEFINES -DHAVE_SIGREG"
1992        echo "yes"
1993    else
1994        echo "no"
1995    fi
1996    rm -f genmake_t*
1997    
1998    printf "  Can we use stat() through C calls...  "
1999    check_HAVE_STAT
2000    if test "x$HAVE_STAT" != x ; then
2001        DEFINES="$DEFINES -DHAVE_STAT"
2002      echo "yes"      echo "yes"
2003  else  else
2004      echo "no"      echo "no"
# Line 1164  rm -f genmake_t* Line 2008  rm -f genmake_t*
2008  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2009  check_netcdf_libs  check_netcdf_libs
2010  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2011        DEFINES="$DEFINES -DHAVE_NETCDF"
2012      echo "yes"      echo "yes"
2013  else  else
2014      echo "no"      echo "no"
2015  fi  fi
2016    
2017    printf "  Can we create LAPACK-enabled binaries...  "
2018    check_lapack_libs
2019    if test "x$HAVE_LAPACK" != x ; then
2020        DEFINES="$DEFINES -DHAVE_LAPACK"
2021        echo "yes"
2022    else
2023        echo "no"
2024    fi
2025    
2026    printf "  Can we call FLUSH intrinsic subroutine...  "
2027    check_HAVE_FLUSH
2028    if test "x$HAVE_FLUSH" = xt ; then
2029        DEFINES="$DEFINES -DHAVE_FLUSH"
2030        echo "yes"
2031    else
2032        echo "no"
2033    fi
2034    
2035    DEFINES="$DEFINES $IGNORE_TIME"
2036    if test "x$EMBED_SRC" = xt ; then
2037        build_embed_encode
2038    fi
2039    if test "x$EMBED_SRC" = xt ; then
2040        ENABLE="$ENABLE embed_files"
2041    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2042    fi
2043    
2044  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2045  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2046  for d in $MODS ; do  for d in $MODS ; do
2047      if test ! -d $d ; then      if test ! -d $d ; then
2048          echo          echo
2049          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2050          exit 1          exit 1
2051      else      else
2052          printf " $d"          printf "$d "
2053          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2054          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2055      fi      fi
2056  done  done
2057  echo  echo
2058    
2059  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2060      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2061  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2062    
2063  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2064      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2065        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2066          EXEDIR=../exe          EXEDIR=../exe
2067      else      else
2068          EXEDIR=.          EXEDIR=.
# Line 1212  if test ! -d ${TOOLSDIR} ; then Line 2081  if test ! -d ${TOOLSDIR} ; then
2081      exit 1      exit 1
2082  fi  fi
2083  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2084      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2085        RETVAL=$?
2086        if test "x${RETVAL}" = x0 ; then
2087            S64='$(TOOLSDIR)/set64bitConst.sh'
2088        else
2089            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2090            RETVAL=$?
2091            if test "x${RETVAL}" = x0 ; then
2092                S64='$(TOOLSDIR)/set64bitConst.csh'
2093            else
2094                cat <<EOF
2095    
2096    ERROR: neither of the two default scripts:
2097    
2098        ${TOOLSDIR}/set64bitConst.sh
2099        ${TOOLSDIR}/set64bitConst.csh
2100    
2101      are working so please check paths or specify (with \$S64) a
2102      working version of this script.
2103    
2104    EOF
2105                exit 1
2106            fi
2107        fi
2108  fi  fi
2109  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2110    
2111  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2112    
2113    #  Set Standard Code Directories:
2114    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2115        STANDARDDIRS="eesupp model"
2116    fi
2117    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2118    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2119    ckM=$?
2120    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2121    ckE=$?
2122    if test $ckM = 0 -a $ckE = 1 ; then
2123        STANDARDDIRS="$STANDARDDIRS eesupp"
2124    fi
2125    
2126  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2127  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2128  #  they appear as regular source code  #  they appear as regular source code
2129  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2130      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2131      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2132        ) > make_eesupp.errors 2>&1
2133      RETVAL=$?      RETVAL=$?
2134      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2135          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1234  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2140  if test -r $ROOTDIR"/eesupp/src/Makefile
2140      fi      fi
2141  fi  fi
2142    
2143  #same for exch2  #same for pkg/exch2 and pkg/regrid
2144  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2145      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2146      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2147      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2148      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2149          rm -f make_exch2.errors          RETVAL=$?
2150      else          if test "x${RETVAL}" = x0 ; then
2151          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2152          cat make_exch2.errors 1>&2          else
2153          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2154                cat make_${pdir}.errors 1>&2
2155                exit 1
2156            fi
2157      fi      fi
2158  fi  done
2159    
2160  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2161  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2162      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2163      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2164          PDEPEND=$tmp  fi
2165      else  if  test "x${PKG_DEPEND}" = x ; then
2166          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2167          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2168  else  else
2169      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2170          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2171          exit 1          exit 1
2172      fi      fi
2173        echo "  getting package dependency info from  $PKG_DEPEND"
2174    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2175        get_pdepend_list $PKG_DEPEND
2176  fi  fi
2177  echo "  getting package dependency info from  $PDEPEND"  
2178  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2179  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2180  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2181      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2182      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2183  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2184  if test ! "x${RETVAL}" = x0 ; then  fi
2185      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2186      exit 1          echo "Warning:  No package groups information was specified."
2187            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2188    else
2189        if test ! -r ${PKG_GROUPS} ; then
2190            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2191            exit 1
2192        fi
2193        echo "  getting package groups info from      $PKG_GROUPS"
2194  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2195    
2196  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2197  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2198  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2199  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2200      for i in "." $MODS ; do      for i in "." $MODS ; do
2201          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2202                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2203                  break                  break
2204          fi          fi
2205      done      done
2206  fi  fi
2207  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2208      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2209  fi      if test "x${PKG_GROUPS}" = x ; then
2210  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2211      echo "    default packages file disabled"          exit 1
2212        fi
2213  else  else
2214      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2215          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2216            exit 1
2217      else      else
2218          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2219          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2220          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2221          RETVAL=$?          RETVAL=$?
2222          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2223              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2224              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2225              exit 1              exit 1
2226          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         while ! expand_pkg_groups; do echo > /dev/null; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2227      fi      fi
2228  fi  fi
2229    for i in $pkg_list ; do
2230        PACKAGES="$PACKAGES $i"
2231    done
2232    echo     "    before group expansion packages are:$PACKAGES"
2233    if test "x${PKG_GROUPS}" != x ; then
2234        RET=1
2235        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2236        echo "    after group expansion packages are: $PACKAGES"
2237    fi
2238    
2239  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2240    echo "" > ./.tmp_pack
2241  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2242      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2243  done  done
# Line 1344  PACKAGES="$PACKAGES $ENABLE" Line 2265  PACKAGES="$PACKAGES $ENABLE"
2265  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2266      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2267      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2268          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2269          exit 1          exit 1
2270      fi      fi
2271      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2272  done  done
# Line 1354  for i in `grep -v "-" ./.tmp_pack | sort Line 2275  for i in `grep -v "-" ./.tmp_pack | sort
2275      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2276  done  done
2277  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2278  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2279    
2280    #  Check for package MNC: if NetCDF is available, then build the MNC
2281    #  template files ; otherwise, delete mnc from the list of packages.
2282    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2283    mnc_in=$?
2284    if test "x$HAVE_NETCDF" != xt ; then
2285        if test "x$mnc_in" = x0 ; then
2286            cat <<EOF
2287    *********************************************************************
2288    WARNING: the "mnc" package was enabled but tests failed to compile
2289      NetCDF applications.  Please check that:
2290    
2291      1) NetCDF is correctly installed for this compiler and
2292      2) the LIBS variable (within the "optfile") specifies the correct
2293           NetCDF library to link against.
2294    
2295      Due to this failure, the "mnc" package is now DISABLED.
2296    *********************************************************************
2297    EOF
2298            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2299            DISABLE="$DISABLE mnc"
2300        else
2301        #  this prevent to add mnc (due to pdepend rules) if not available
2302            DISABLE="$DISABLE mnc"
2303        fi
2304    else
2305        # we have NetCDF, we try to build MNC template files
2306        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2307        RETVAL=$?
2308        if test "x${RETVAL}" = x0 ; then
2309            rm -f make_mnc.errors
2310        else
2311            echo "Error: problem encountered while building source files in pkg/mnc:"
2312            cat make_mnc.errors 1>&2
2313            if test "x$mnc_in" = x0 ; then
2314                exit 1
2315            else
2316                DISABLE="$DISABLE mnc"
2317            fi
2318        fi
2319    fi
2320    
2321    #  Check for package PROFILES: if NetCDF is not available,
2322    #  then delete profiles from the list of available packages.
2323    if test "x$HAVE_NETCDF" != xt ; then
2324        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2325        RETVAL=$?
2326        if test "x$RETVAL" = x0 ; then
2327            cat <<EOF
2328    *********************************************************************
2329    WARNING: the "profiles" package was enabled but tests failed to
2330      compile NetCDF applications.  Please check that:
2331    
2332      1) NetCDF is correctly installed for this compiler and
2333      2) the LIBS variable (within the "optfile") specifies the correct
2334           NetCDF library to link against.
2335    
2336      Due to this failure, the "profiles" package is now DISABLED.
2337    *********************************************************************
2338    EOF
2339            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2340            DISABLE="$DISABLE profiles"
2341        else
2342        #  this prevent to add profiles (due to pdepend rules) if not available
2343            DISABLE="$DISABLE profiles"
2344        fi
2345    fi
2346    
2347    #  Check for package RADTRANS: if LAPACK is not available,
2348    #  then issue a warning that the direct radtrans solver is not available.
2349    if test "x$HAVE_LAPACK" != xt ; then
2350        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2351        RETVAL=$?
2352        if test "x$RETVAL" = x0 ; then
2353            cat <<EOF
2354    *********************************************************************
2355    WARNING: the "radtrans" package was enabled but tests failed to
2356      compile LAPACK applications.  This means that the direct radtrans
2357      solver is not available and compilation will fail if it is enabled.
2358      If you want to use the direct solver, please check that:
2359    
2360      1) LAPACK is correctly installed for this compiler and
2361      2) the LIBS variable (within the "optfile") specifies the correct
2362         LAPACK library to link against.
2363    *********************************************************************
2364    EOF
2365        fi
2366    fi
2367    
2368  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2369  ck=    echo "  applying package dependency rules"
2370  while test "x$ck" != xtt ; do    ck=
2371      while test "x$ck" != xtt ; do
2372      i=0      i=0
2373      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2374      rtot=$nname      rtot=$nname
2375      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2376    
2377          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2378          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1374  while test "x$ck" != xtt ; do Line 2384  while test "x$ck" != xtt ; do
2384                  pin="t"                  pin="t"
2385              fi              fi
2386          done          done
2387            #  or in the current $STANDARDDIRS list?
2388            for p in $STANDARDDIRS ; do
2389                if test "x$p" = "x$pname" ; then pin="t" ; fi
2390            done
2391    
2392          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2393          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1396  while test "x$ck" != xtt ; do Line 2410  while test "x$ck" != xtt ; do
2410    
2411          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2412          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2413                #echo "   " $pname ": need to add :" $dname
2414              in_dis="f"              in_dis="f"
2415              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2416                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1416  while test "x$ck" != xtt ; do Line 2431  while test "x$ck" != xtt ; do
2431          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2432          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2433              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2434              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2435              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2436              exit 1              exit 1
2437          fi          fi
2438          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2439            #i=$(( $i + 1 ))
2440      done      done
2441      ck=$ck"t"      ck=$ck"t"
2442  done    done
2443  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2444    fi
2445  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2446      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2447      if test -d $adr ; then      if test -d $adr ; then
# Line 1439  for i in $PACKAGES ; do Line 2456  for i in $PACKAGES ; do
2456      fi      fi
2457  done  done
2458    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2459  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2460  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2461  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2462  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2463  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2464  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2465  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1485  for n in $names ; do Line 2475  for n in $names ; do
2475              fi              fi
2476          done          done
2477          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2478              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2479              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2480          fi          fi
2481      fi      fi
2482  done  done
2483  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2484  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2485      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2486      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2487  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2488    
2489  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2490      case $i in      case $i in
2491          aim_v23)          aim_v23)
2492              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2493              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2494              ;;              ;;
2495      esac      esac
# Line 1507  for i in $PACKAGES ; do Line 2497  for i in $PACKAGES ; do
2497    
2498  done  done
2499    
2500  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2501  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2502  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2503      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2504          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1544  for i in $spaths ; do Line 2531  for i in $spaths ; do
2531      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2532          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2533          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2534          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2535          for n in $names ; do          for n in $names ; do
2536              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2537          done          done
2538      fi      fi
2539      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2540      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2541          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2542          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2543  #**** not yet enabled ****  #**** not yet enabled ****
2544  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2545  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1566  fi Line 2553  fi
2553    
2554  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2555  #  compiler.  #  compiler.
2556  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2557      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2558  fi  fi
2559  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2560    touch adSrcFiles.tmp
2561  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2562      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2563      for j in $list_files ; do      for j in $list_files ; do
2564          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2565      done      done
2566  done  done
2567    if test ! "x"$FS = "x.f" ; then
2568        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2569        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2570    fi
2571    
2572  echo  echo
2573  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2574  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2575  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2576      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2577          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2578      fi      fi
2579  done  done
2580    
2581    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2582        if test ! "x$MPIINCLUDEDIR" = x ; then
2583            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2584            #   checking for additional included headers (in case of chain of included
2585            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2586            mpi_headers_do_local_copy
2587        fi
2588    fi
2589    
2590  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2591  rm -rf .links.tmp  rm -rf .links.tmp
2592  mkdir .links.tmp  mkdir .links.tmp
2593    touch .links.tmp/foo
2594    if test ! -r ".links.tmp/foo" ; then
2595        echo
2596        echo "ERROR : something is wrong with your directory permissions or"
2597        echo "   your user file-creation mask (\"umask\") since creating a"
2598        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2599        echo "   not working.  Please try setting your umask to something"
2600        echo "   sane such as:"
2601        echo
2602        echo "      umask 0002"
2603        echo
2604        echo "   and please verify that you have the proper permissions for"
2605        echo "   creating sub-directories and then reading files created"
2606        echo "   within them."
2607        echo
2608        exit 1
2609    fi
2610    rm -f .links.tmp/foo
2611    
2612    if test "x$OPENAD" != x ; then
2613        OAD_DONT_COMPILE="/dev/null"
2614        OAD_DONT_TRANSFORM="/dev/null"
2615        OAD_KEEP_ORIGINAL="/dev/null"
2616        OAD_CB2M_FILES="/dev/null"
2617        OADTOOLS="$TOOLSDIR/OAD_support"
2618        echo "  looking for dontCompile file:  "
2619        for i in "." $MODS ; do
2620            if test -r $i"/dontCompile" ; then
2621                OAD_DONT_COMPILE=$i"/dontCompile"
2622                echo "     found $OAD_DONT_COMPILE"
2623                break
2624            fi
2625        done
2626        echo "  looking for dontTransform file:  "
2627        for i in "." $MODS ; do
2628            if test -r $i"/dontTransform" ; then
2629                OAD_DONT_TRANSFORM=$i"/dontTransform"
2630                echo "     found $OAD_DONT_TRANSFORM"
2631                break
2632            fi
2633        done
2634        echo "  looking for keepOriginal file:  "
2635        for i in "." $MODS ; do
2636            if test -r $i"/keepOriginal" ; then
2637                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2638                echo "     found $OAD_KEEP_ORIGINAL"
2639                break
2640            fi
2641        done
2642        echo "  looking for cb2mFiles:  "
2643        for i in "." $MODS ; do
2644            if test -r $i"/cb2mFiles" ; then
2645                OAD_CB2M_FILES=$i"/cb2mFiles"
2646                echo "     found $OAD_CB2M_FILES"
2647                break
2648            fi
2649        done
2650        echo "   OpenAD exceptions:  "
2651    fi
2652    
2653  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2654  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2655  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2656  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2657  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2658  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2659  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2660    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2661  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2662  for d in $alldirs ; do  for d in $alldirs ; do
2663      deplist=      deplist=
2664      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2665      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2666        if test "x$OPENAD" != x ; then
2667            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2668        fi
2669      for sf in $sfiles ; do      for sf in $sfiles ; do
2670          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2671              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2672                  case $d/$sf in                  ignore_f=f
2673                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2674                      ./$PACKAGES_DOT_H)
2675                            ignore_f=t
2676                            ;;
2677                      ./AD_CONFIG.h)
2678                            ignore_f=t
2679                          ;;                          ;;
2680                    ./AD_CONFIG.h)                    ./FC_NAMEMANGLE.h)
2681                            ignore_f=t
2682                          ;;                          ;;
2683                    ./FC_NAMEMANGLE.h)                    ./BUILD_INFO.h)
2684                            ignore_f=t
2685                          ;;                          ;;
2686                    *)                    ./EMBEDDED_FILES.h)
2687                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2688                          ;;                          ;;
2689                  esac                    *)
2690                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          #  For the local directory *ONLY*,
2691                  case $extn in                          #  ignore all soft-links
2692                      F)                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2693                          echo    " \\"  >> srclist.inc                              ignore_f=t
2694                          printf " $sf" >> srclist.inc                          else
2695                                touch .links.tmp/$sf
2696                                deplist="$deplist $sf"
2697                            fi
2698                            ;;
2699                    esac
2700                    if test "x$ignore_f" = xf ; then
2701                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2702                        case $extn in
2703                          F)
2704                            echo    " \\"  >> F77srclist.tmp
2705                            printf " $sf" >> F77srclist.tmp
2706                            if test "x$OPENAD" != x ; then
2707                                basename=${sf%%.F}
2708                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2709                                if test -z "$isAD" ; then
2710                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2711                                    if test -z "$toBeIgnored" ; then
2712                                        echo    " \\"  >> nonADF77srclist.tmp
2713                                        printf " $sf" >> nonADF77srclist.tmp
2714                                    else
2715                                        echo "    not to be compiled   :  $sf"
2716                                    fi
2717                                else # file is initially listed as an AD file we want to exclude it
2718                                     # or we want to retain the untransformed version
2719                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2720                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2721                                    if test -n "$notToBeTransformed"; then
2722                                        echo "    not to be transformed:  $sf"
2723                                    fi
2724                                    if test -n "$untransformedVersionToBeKept" ; then
2725                                        echo "    original to be kept  :  $sf"
2726                                    fi
2727                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2728                                        echo    " \\"  >> nonADF77srclist.tmp
2729                                        printf " $sf" >> nonADF77srclist.tmp
2730                                    fi
2731                                fi
2732                            fi
2733                          ;;                          ;;
2734                      F90)                      F90)
2735                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2736                          printf " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2737                          ;;                          ;;
2738                      c)                      c)
2739                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2740                          printf " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2741                          ;;                          ;;
2742                      h)                      h)
2743                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2744                          printf " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2745                          ;;                          ;;
2746                      flow)                      flow)
2747                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2748                          printf " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2749                          ;;                          ;;
2750                  esac                     esac
2751                    fi
2752              fi              fi
2753          fi          fi
2754      done      done
2755      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2756          if test "$d" != "." ; then
2757          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2758          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2759          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2760          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2761    # This may happen when make thinks that a header file has to be "remade"
2762    # because a module it depends on has changed.  In this case we do nothing.
2763            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2764          fi
2765      fi      fi
2766  done  done
2767  rm -rf .links.tmp  rm -rf .links.tmp
2768  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2769  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2770  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2771  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2772  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2773    echo "" >> ad_flow_files.tmp
2774    
2775    CMDLINE=$0
2776    for xx in "$@" ; do nw=`echo $xx | wc -w`
2777        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2778                            else CMDLINE="$CMDLINE '$xx'" ; fi
2779    done
2780    
2781  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2782      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2783  fi  fi
2784  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2785  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1668  echo "#    $MACHINE" >> $MAKEFILE Line 2787  echo "#    $MACHINE" >> $MAKEFILE
2787  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2788  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2789  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2790  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2791  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2792  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2793    
2794  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2795  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1679  EXE_SVD=$EXECUTABLE"_svd" Line 2798  EXE_SVD=$EXECUTABLE"_svd"
2798  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2799  #  #
2800  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2801  #  #
2802  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2803  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2804  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1690  cat >>$MAKEFILE <<EOF Line 2809  cat >>$MAKEFILE <<EOF
2809  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2810  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2811  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2812  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2813  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2814  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1699  cat >>$MAKEFILE <<EOF Line 2816  cat >>$MAKEFILE <<EOF
2816  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2817    
2818  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2819  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2820  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2821  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2822  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2823  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2824  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2825    OADTOOLS    = ${OADTOOLS}
2826    
2827  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2828  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1716  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2834  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2834  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2835    
2836  # These files are created by Makefile  # These files are created by Makefile
2837  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2838  EOF  EOF
2839    
2840  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2841        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2842    else
2843        echo "EMBEDDED_FILES = " >>$MAKEFILE
2844    fi
2845    
2846    # extract default cpp search path so we can pass it to makedepend
2847    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2848    
2849  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2850  # Unix ln (link)  # Unix ln (link)
2851  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2852  # Dependency generator  # Dependency generator
2853  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2854  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1735  KPP = ${KPP} Line 2857  KPP = ${KPP}
2857  FC = ${FC}  FC = ${FC}
2858  # Fortran compiler  # Fortran compiler
2859  F90C = ${F90C}  F90C = ${F90C}
2860    # C compiler
2861    CC = ${CC}
2862  # Link editor  # Link editor
2863  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2864    
# Line 1742  LINK = ${LINK} ${LDADD} Line 2866  LINK = ${LINK} ${LDADD}
2866  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2867  # Includes for CPP  # Includes for CPP
2868  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2869    # default CPP includes for makedepend
2870    CPPINCLUDES = ${CPPINCLUDES}
2871  # Flags for KPP  # Flags for KPP
2872  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2873  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2874  # Optim./debug for FC  # Optim./debug for FC
2875  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2876  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2877  # Optim./debug for FC  # Optim./debug for FC
2878  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2879  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2880    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2881  # Flags for CC  # Flags for CC
2882  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2883  # Files that should not be optimized  # Files that should not be optimized
2884  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2885  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2886  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2887  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2888  # Name of the Mekfile  # Name of the makefile
2889  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2890    # Name of the make program
2891    MAKE = ${MAKE}
2892    
2893  EOF  EOF
2894    
2895  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2896  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2897  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2898  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2899  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2900    cat ad_flow_files.tmp   >> $MAKEFILE
2901    
2902    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2903    
2904  echo >> $MAKEFILE  echo >> $MAKEFILE
2905  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2906  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2907  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2908    # hence the $FS and $FS90 here.
2909    # for fixed format f90 files we use ff90 or FF90 resp
2910    # but these are not expected to be the original source files
2911    
2912    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2913    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2914    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2915    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2916  echo >> $MAKEFILE  echo >> $MAKEFILE
2917  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2918  echo '.SUFFIXES: .o .F .p .'$FS' .c .F90 .'$FS90 >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2919    
2920  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2921    
2922  all: \$(EXECUTABLE)  all: fwd_exe_target
2923  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2924            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2925            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2926            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2927            @-rm -f ad_config.template
2928            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2929    
2930    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2931          @echo Creating \$@ ...          @echo Creating \$@ ...
2932          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2933    
2934  depend:  depend:
2935          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2936          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2937          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2938          -rm -f makedepend.out          -rm -f makedepend.out
2939    
2940  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2941    
2942  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2943            ar rcv libmitgcmuv.a \$(OBJFILES)
2944            ar d   libmitgcmuv.a main.o
2945    
2946    obj: \$(OBJFILES)
2947    
2948    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2949    
2950    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2951    
2952  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2953          @printf 'running ... '          @printf 'running ... '
2954          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2955    
2956    # remove most of the files that "make" generates
2957  clean:  clean:
2958          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2959            -rm -rf *.o
2960            -rm -rf *.$FS *.flowdir
2961            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2962    
2963    # remove most of the files that "make" and "make depend" generate
2964  Clean:  Clean:
2965          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2966          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2967          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2968          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2969    
2970    # remove also the executable, files that "genmake2" generates (except Makefile)
2971    #         and output from a run (plus log files from testreport)
2972  CLEAN:  CLEAN:
2973          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2974            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2975            -rm -f $LOGFILE genmake_state genmake_*optfile
2976            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2977            -rm -rf mpi_headers mnc_test_*
2978          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2979          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2980          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2981          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
2982            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
2983            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2984            -rm -f oad_cp.[0-9][0-9][0-9].?????
2985    
 #eh3 Makefile: makefile  
2986  makefile:  makefile:
2987          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2988  cleanlinks:  cleanlinks:
2989          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2990    
2991  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2992  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2993          @echo Creating \$@ ...          @echo Creating \$@ ...
2994          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2995  AD_CONFIG.h:  AD_CONFIG.h:
2996          @echo Creating \$@ ...          @echo Creating \$@ ...
2997          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2998  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2999          @echo Creating \$@ ...          @echo Creating \$@ ...
3000          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
3001    
3002    BUILD_INFO.h:
3003            @echo Creating \$@ ...
3004    EOF
3005    
3006    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3007    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3008    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3009    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3010    
3011    if test "x$EMBED_SRC" = xt ; then
3012        cat >>$MAKEFILE <<EOF
3013    
3014    decode_files.o : EMBEDDED_FILES.h
3015    
3016    ##  \$(F77_PP_SRC_FILES)
3017    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3018            @echo Creating \$@ ...
3019            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3020            -rm -f all_fF.tar.gz
3021            -gzip all_fF.tar
3022    
3023    EMBEDDED_FILES.h : all_fF.tar.gz
3024            @echo Creating \$@ ...
3025            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3026    
3027    EOF
3028    fi
3029    
3030    cat >>$MAKEFILE <<EOF
3031    
3032  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
3033    
3034  %.o : %.F  ## This nullifies any default implicit rules concerning these two file types:
3035    ## %.o : %.F
3036    
3037    # C preprocessing and replacing the _d in constants:
3038    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3039    
3040  .F.$FS:  .F.$FS:
3041          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3042  .$FS.o:  .$FS.o:
3043          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3044    .F.o:
3045            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3046  .F90.$FS90:  .F90.$FS90:
3047          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3048    .FF90.f$FS90:
3049            \$(CPPCMD)  > \$@
3050  .$FS90.o:  .$FS90.o:
3051          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3052    .f$FS90.o:
3053            cp \$< \$(basename  \$<).f90
3054            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3055  .c.o:  .c.o:
3056          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3057    .flow.flowdir:
3058            \$(CPPCMD) > \$@
3059    
3060  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3061  .F.p:  .F.p:
3062          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3063  .p.$FS:  .p.$FS:
3064          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3065    
3066    EOF
3067    
3068  #=========================================  #=========================================
3069  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3070    #===  for TAMC/TAF  ======================
3071    
3072    if test "x$OPENAD" = x ; then
3073    
3074    cat >>$MAKEFILE <<EOF
3075    
3076  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3077  TAF            = ${TAF}  TAF            = ${TAF}
3078    
3079  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3080  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3081    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3082    
3083  EOF  EOF
3084    
# Line 1866  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3087  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3087  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3088  for i in $ad_vars ; do  for i in $ad_vars ; do
3089      name=$i      name=$i
3090      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3091      eval $t1      eval $t1
3092      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3093      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3094  done  done
3095    
3096  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3097  echo >> $MAKEFILE  echo >> $MAKEFILE
3098  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3099  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3100  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3101      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3102      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3103  done  done
3104  echo >> $MAKEFILE  echo >> $MAKEFILE
3105  rm -f ad_files  rm -f adSrcFiles.tmp
3106    
3107  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3108    
3109  # ... AD ...  # ... AD ...
3110  adall: ad_taf  adall: ad_exe_target
3111  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3112  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3113    
3114    ad_exe_target:
3115            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3116            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3117            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3118            @-rm -f ad_config.template
3119            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3120    
3121  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3122          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3123          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3124          -rm -f ad_config.template          @-rm -f ad_config.template
3125          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3126          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3127          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3128    
3129  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3130          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3131          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3132            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3133    
3134  adtafonly:  adtafonly:
3135          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3136          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3137            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3138    
3139    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3140            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3141    
3142    ad_tamc_output.$FS: ad_input_code.$FS
3143            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3144            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3145    
3146  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3147          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3148    
3149  ad_tamc_output.f: ad_input_code.f  adonlyfwd:
3150          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
3151    
3152  ad_tamc: ad_tamc_output.o \$(OBJFILES)  adtrick:
3153          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3154    
3155    adobj: ad_taf_output.o \$(OBJFILES)
3156    
3157  # ... FTL ...  # ... FTL ...
3158  ftlall: ftl_taf  ftlall: ftl_exe_target
3159  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3160  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3161    
3162  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3163          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3164          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3165          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3166          @make \$(F77FILES)          @-rm -f ad_config.template
3167          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
   
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
   
 ftltafonly:  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f  
3168    
3169  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3170          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3171            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3172            @-rm -f ad_config.template
3173            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3174            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3175            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3176    
3177    ftl_taf_output.$FS: ftl_input_code.$FS
3178            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3179            ls -l ftl_input_code_ftl.$FS
3180            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3181    
3182  ftl_tamc_output.f: ftl_input_code.f  ftltafonly:
3183          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3184          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          ls -l ftl_input_code_ftl.$FS
3185            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3186    
3187    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3188            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3189    
3190    ftl_tamc_output.$FS: ftl_input_code.$FS
3191            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3192            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3193    
3194  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3195          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3196    
3197  # ... SVD ...  # ... SVD ...
3198  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3199  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3200            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3201    svdall: svd_touch svd_taf
3202    
3203  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3204          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3205    
3206            @echo "--->>> Only COMPILE svd code! <<<---"
3207            @echo "--->>> Assumes you previously <<<---"
3208            @echo "--->>> did make svdtaf        <<<---"
3209    
3210    svd_touch:
3211            @echo "--->>> Only COMPILE svd code! <<<---"
3212            @echo "--->>> Assumes you previously <<<---"
3213            @echo "--->>> did make svdtaf        <<<---"
3214            touch ad_taf_output.$FS ftl_taf_output.$FS
3215            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3216            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3217            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3218            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3219            @-rm -f ad_config.template
3220    
3221  #=========================================  EOF
3222    
3223    fi
3224    
3225    #===  for OpenAD  ========================
3226    
3227    if test "x$OPENAD" != x ; then
3228    
3229    # ============ begin OpenAD specific section ==============
3230    
3231    cat >>$MAKEFILE <<EOF
3232    
3233    # all the source files linked from the various locations:
3234    ALL_LINKED_FILES= \
3235    \$(F77_SRC_FILES) \
3236    \$(C_SRC_FILES) \
3237    \$(H_SRC_FILES) \
3238    \$(F90_SRC_FILES) \
3239    \$(SPECIAL_FILES)
3240    
3241    ifndef OPENADROOT
3242      \$(error "Error:  environment variable OPENADROOT not defined!")
3243    endif
3244    
3245    ifndef XAIFSCHEMAROOT
3246      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3247    endif
3248    
3249    ifndef XAIFBOOSTERROOT
3250      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3251    endif
3252    
3253    EOF
3254    
3255    echo "  Add the source list for common block to module conversion "
3256    echo >> $MAKEFILE
3257    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3258    for i in `cat ${OAD_CB2M_FILES}` ; do
3259      echo    " \\" >> $MAKEFILE
3260      printf " $i" >> $MAKEFILE
3261    done
3262    echo >> $MAKEFILE
3263    
3264    echo "  Add the source list for AD code generation"
3265    echo >> $MAKEFILE
3266    printf "AD_FILES = " >> $MAKEFILE
3267    for i in `cat ${OAD_CB2M_FILES}` ; do
3268      echo    " \\" >> $MAKEFILE
3269      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3270    done
3271    AD_FILES=`cat adSrcFiles.tmp`
3272    for i in $AD_FILES ; do
3273      basename=${i%%.f}
3274      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3275      if test -z "$toBeIgnored" ; then
3276        echo    " \\" >> $MAKEFILE
3277        printf " $i" >> $MAKEFILE
3278      fi
3279    done
3280    echo >> $MAKEFILE
3281    rm -f adSrcFiles.tmp
3282    
3283    cat >>$MAKEFILE <<EOF
3284    
3285    adAll: \$(EXE_AD)
3286    .PHONY: adAll
3287    
3288    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3289    
3290    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3291    
3292    .PHONY: adDepend
3293    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3294            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3295            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3296            -rm -f makedepend.out
3297    
3298    OPENAD_SUPPORT_F90_SRC_FILES = \
3299    w2f__types.F90 \
3300    OAD_active.F90 \
3301    OAD_cp.F90 \
3302    OAD_rev.F90 \
3303    OAD_tape.F90 \
3304    revolve.F90
3305    
3306    OPENAD_SUPPORT_C_SRC_FILES = \
3307    iaddr.c \
3308    timeRatio.c
3309    
3310    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3311            cat \$^ > \$@
3312    
3313    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3314            cat \$^ > \$@
3315    
3316    f95_test.out: f95_test_mods.f90 f95_test.f90
3317            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3318            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3319    
3320    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3321    
3322    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3323    
3324    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3325    
3326    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3327            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3328    
3329    # create sources files modules from header files containing common blocks
3330    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3331            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3332    
3333    # create new header files with USE statements for the new modules made above
3334    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3335            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3336    
3337    # change the include directives of everybody to refer to  the new header files with the USE statements
3338    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3339            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3340    
3341    # makefile debug rule
3342    small_f: \$(CB2M_F90_PP_SRC_FILES)
3343    .PHONY: small_f
3344    
3345    ad_output.txt: \$(EXE_AD)
3346            @printf 'linking data files ... '
3347            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3348            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3349            @printf 'running ... '
3350            @./\$(EXE_AD) > \$@
3351    
3352    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3353            cat \$^ > \$@
3354    
3355    # canonicalizer
3356    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3357            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3358    
3359    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3360    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3361            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3362    
3363    # F -> WHIRL
3364    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3365            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3366    
3367    # WHIRL -> XAIF
3368    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3369            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3370    
3371    # XAIF -> XAIF'
3372    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3373            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3374    
3375    # XAIF' -> WHIRL'
3376    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3377            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3378    
3379    # WHIRL' -> F'
3380    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3381            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3382    
3383    # insert template directives
3384    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3385            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3386    
3387    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3388    # postprocess F'
3389    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3390            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3391            # the target is a placeholder to trigger a single execution of the rule
3392            touch \$@
3393    # put this so make knows about the postprocessing output
3394    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3395    
3396    # link the XAIF schema files
3397    %.xsd:
3398            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3399    
3400    # link the support files:
3401    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3402            \$(LN) \${OADTOOLS}/\$@ .
3403    
3404    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3405    
3406    # ============ end OpenAD specific section ==============
3407    
3408  EOF  EOF
3409    
3410    fi
3411    
3412    #=========================================
3413    
3414  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3415      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3416  fi  fi
# Line 1996  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3446  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3446  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3447    
3448  # Create special header files  # Create special header files
3449  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3450  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3451      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3452  else  else
# Line 2010  else Line 3460  else
3460      fi      fi
3461  fi  fi
3462  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3463      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3464  fi  fi
3465    
   
3466  #  Write the "state" for future records  #  Write the "state" for future records
3467  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3468      printf "" > genmake_state      printf "" > genmake_state
3469      for i in $gm_state ; do      for i in $gm_state ; do
3470          t1="t2=\$$i"          t1="t2=\$$i"
3471          eval $t1          eval $t1
3472          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3473      done      done
3474  fi  fi

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