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revision 1.66 by edhill, Mon Feb 23 21:51:32 2004 UTC revision 1.77 by edhill, Thu Apr 8 23:48:43 2004 UTC
# Line 37  test_for_string_in_file() { Line 37  test_for_string_in_file() {
37      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
41          grep -i "$strng" $file          grep -i "$strng" $file
42          return 1          return 1
43      fi      fi
# Line 67  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -e Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -e "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -e Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161  # Guess possible config options for this host  # Guess possible config options for this host
162  find_possible_configs()  {  find_possible_configs()  {
163    
# Line 80  find_possible_configs()  { Line 166  find_possible_configs()  {
166      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
167      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
168      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
169      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
170        PLATFORM=$tmp3
171        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
172      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
173      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
174            
# Line 100  find_possible_configs()  { Line 188  find_possible_configs()  {
188          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
189      fi      fi
190    
191      # makedepend is not always available      #  The "original" makedepend is part of the Imake system that is
192        #  most often distributed with XFree86 or with an XFree86 source
193        #  package.  As a result, many machines (eg. generic Linux) do not
194        #  have a system-default "makedepend" available.  For those
195        #  systems, we have two fall-back options:
196        #
197        #    1) a makedepend implementation shipped with the cyrus-imapd
198        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
199        #
200        #    2) a known-buggy xmakedpend shell script
201        #
202        #  So the choices are, in order:
203        #
204        #    1) use the user-specified program
205        #    2) use a system-wide default
206        #    3) locally build and use the cyrus implementation
207        #    4) fall back to the buggy local xmakedpend script
208        #
209      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
210        which makedepend >& /dev/null        which makedepend > /dev/null 2>&1
211        RETVAL=$?        RV0=$?
212        if test "x${RETVAL}" = x1 ; then        cat <<EOF >> genmake_tc.f
213           echo "    makedepend was not found. Using xmakedpend instead."        program test
214           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'        write(*,*) 'test'
215          stop
216          end
217    EOF
218          makedepend genmake_tc.f > /dev/null 2>&1
219          RV1=$?
220          if test ! "x${RV0}${RV1}" = x00 ; then
221             echo "    a system-default makedepend was not found."
222    
223             #  Try to build the cyrus impl
224             rm -f ./genmake_cy_md
225             (
226                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
227                     &&  ./configure > /dev/null 2>&1  \
228                     &&  make > /dev/null 2>&1
229                 if test -x ./makedepend.exe ; then
230                     $LN ./makedepend.exe ./makedepend
231                 fi
232                 ./makedepend ifparser.c > /dev/null 2>&1  \
233                     &&  echo "true"
234             ) > ./genmake_cy_md
235             grep true ./genmake_cy_md > /dev/null 2>&1
236             RETVAL=$?
237             if test "x$RETVAL" = x0 ; then
238                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
239             else
240                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
241             fi
242             rm -f ./genmake_cy_md
243        fi        fi
244      fi      fi
245    
# Line 145  EOF Line 278  EOF
278          echo "   "$p_FC          echo "   "$p_FC
279          if test "x$FC" = x ; then          if test "x$FC" = x ; then
280              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
281                echo "  Setting FORTRAN compiler to: "$FC
282          fi          fi
283      fi      fi
284    
285      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
286          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
287          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
288              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
289              echo "  The options file:  $p_OF"          fi
290              echo "    appears to match so we'll use it."      fi
291              break  #    echo "  The options file:  $p_OF"
292          fi  #    echo "    appears to match so we'll use it."
293      done  #   for i in $p_FC ; do
294    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
295    #if test -r $p_OF ; then
296    #    OPTFILE=$p_OF
297    #    echo "  The options file:  $p_OF"
298    #    echo "    appears to match so we'll use it."
299    #    break
300    #fi
301    #   done
302      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
303          cat 1>&2 <<EOF          cat 1>&2 <<EOF
304    
# Line 215  get_pdepend_list()  { Line 357  get_pdepend_list()  {
357      . ./.pd_tmp      . ./.pd_tmp
358      rm -f ./.pd_tmp      rm -f ./.pd_tmp
359    
360      echo -n "PNAME = "${}      printf "PNAME = "${}
361  }  }
362    
363    
# Line 253  Usage: "$0" [OPTIONS] Line 395  Usage: "$0" [OPTIONS]
395        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
396            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
397    
398        -makedepend NAME | -md NAME
399          --makedepend=NAME | -md=NAME
400              Use "NAME" for the MAKEDEPEND program.
401    
402      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
403        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
404            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 294  Usage: "$0" [OPTIONS] Line 440  Usage: "$0" [OPTIONS]
440            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
441            is being used.            is being used.
442    
443        -mpi | --mpi
444              Include MPI header files and link to MPI libraries
445        -mpi=PATH | --mpi=PATH
446              Include MPI header files and link to MPI libraries using MPI_ROOT
447              set to PATH. i.e. Include files from $PATH/include, link to libraries
448              from $PATH/lib and use binaries from $PATH/bin.
449    
450        -bash NAME
451              Explicitly specify the Bourne or BASH shell to use
452    
453    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
454    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
455    
# Line 438  EOF Line 594  EOF
594    
595    
596  check_netcdf_libs()  {  check_netcdf_libs()  {
597      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.for
598        program fgennc        program fgennc
599  #include "netcdf.inc"  #include "netcdf.inc"
600        integer iret, ncid, xid        integer iret, ncid, xid
# Line 450  check_netcdf_libs()  { Line 606  check_netcdf_libs()  {
606        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
607        end        end
608  EOF  EOF
609      $CPP genmake_tnc.F > genmake_tnc.f  \      $CPP genmake_tnc.for > genmake_tnc.f  \
610          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
611      RET_COMPILE=$?      RET_COMPILE=$?
612      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
# Line 459  EOF Line 615  EOF
615          HAVE_NETCDF=t          HAVE_NETCDF=t
616      else      else
617          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
618          $CPP genmake_tnc.F > genmake_tnc.f  \          $CPP genmake_tnc.for > genmake_tnc.f  \
619              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
620              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
621          RET_COMPILE=$?          RET_COMPILE=$?
# Line 476  EOF Line 632  EOF
632  }  }
633    
634    
635    
636    ###############################################################################
637    #   Sequential part of script starts here
638    ###############################################################################
639    
640  #  Set defaults here  #  Set defaults here
641  COMMANDL="$0 $@"  COMMANDL="$0 $@"
642    
# Line 486  KPP= Line 647  KPP=
647  FC=  FC=
648  CPP=  CPP=
649  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
650  DEFINES=  DEFINES=
651  PACKAGES=  PACKAGES=
652  ENABLE=  ENABLE=
# Line 503  FOPTIM= Line 663  FOPTIM=
663  CFLAGS=  CFLAGS=
664  KFLAGS1=  KFLAGS1=
665  KFLAGS2=  KFLAGS2=
666    #LDADD=
667  LIBS=  LIBS=
668  KPPFILES=  KPPFILES=
669  NOOPTFILES=  NOOPTFILES=
670  NOOPTFLAGS=  NOOPTFLAGS=
671    MPI=
672    MPIPATH=
673    
674  # DEFINES checked by test compilation  # DEFINES checked by test compilation
675  HAVE_SYSTEM=  HAVE_SYSTEM=
# Line 521  SOURCEDIRS= Line 684  SOURCEDIRS=
684  INCLUDEDIRS=  INCLUDEDIRS=
685  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
686    
687    G2ARGS=
688    BASH=
689  PWD=`pwd`  PWD=`pwd`
690  MAKE=make  MAKE=make
691  AWK=awk  AWK=awk
# Line 536  IEEE= Line 701  IEEE=
701  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
702      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
703  fi  fi
704    FS=
705    FS90=
706    
707  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
708  AD_OPTFILE=  AD_OPTFILE=
# Line 589  for i in . $MODS ; do Line 756  for i in . $MODS ; do
756          break          break
757      fi      fi
758  done  done
759  echo -n "  getting local config information:  "  printf "  getting local config information:  "
760  if test -e $gm_local ; then  if test -e $gm_local ; then
761      echo "using $gm_local"      echo "using $gm_local"
762      . $gm_local      . $gm_local
# Line 613  fi Line 780  fi
780  ac_prev=  ac_prev=
781  for ac_option ; do  for ac_option ; do
782    
783        G2ARGS="$G2ARGS \"$ac_option\""
784    
785      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
786      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
787          eval "$ac_prev=\$ac_option"          eval "$ac_prev=\$ac_option"
# Line 654  for ac_option ; do Line 823  for ac_option ; do
823          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
824              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
825                    
826            -bash | --bash)
827                ac_prev=BASH ;;
828            -bash=* | --bash=*)
829                BASH=$ac_optarg ;;
830            
831            -makedepend | --makedepend | -md | --md)
832                ac_prev=MAKEDEPEND ;;
833            -makedepend=* | --makedepend=* | -md=* | --md=*)
834                MAKEDEPEND=$ac_optarg ;;
835            
836          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
837              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
838          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 701  for ac_option ; do Line 880  for ac_option ; do
880          -fc=* | --fc=*)          -fc=* | --fc=*)
881              FC=$ac_optarg ;;              FC=$ac_optarg ;;
882                    
883            -fs | --fs)
884                ac_prev=FS ;;
885            -fs=* | --fs=*)
886                FS=$ac_optarg ;;
887            
888            -fs90 | --fs90)
889                ac_prev=FS90 ;;
890            -fs90=* | --fs90=*)
891                FS90=$ac_optarg ;;
892            
893          -ieee | --ieee)          -ieee | --ieee)
894              IEEE=true ;;              IEEE=true ;;
895          -noieee | --noieee)          -noieee | --noieee)
896              IEEE= ;;              IEEE= ;;
897    
898            -mpi | --mpi)
899                MPI=true ;;
900            -mpi=* | --mpi=*)
901                MPIPATH=$ac_optarg
902                MPI=true ;;
903                    
904  #       -jam | --jam)  #       -jam | --jam)
905  #           JAM=1 ;;  #           JAM=1 ;;
# Line 757  if test "x${ROOTDIR}" = x ; then Line 952  if test "x${ROOTDIR}" = x ; then
952          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
953              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
954                  ROOTDIR=$d                  ROOTDIR=$d
955                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
956                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
957                  break                  break
958              fi              fi
# Line 791  if test "x$OPTFILE" != xNONE ; then Line 986  if test "x$OPTFILE" != xNONE ; then
986          . "$OPTFILE"          . "$OPTFILE"
987          RETVAL=$?          RETVAL=$?
988          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
989              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
990              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
991              exit 1              exit 1
992          fi          fi
# Line 804  if test "x$OPTFILE" != xNONE ; then Line 999  if test "x$OPTFILE" != xNONE ; then
999      fi      fi
1000  fi  fi
1001    
1002    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1003    # check_for_broken_Ff
1004    
1005  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1006  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1007      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 818  if test "x${AD_OPTFILE}" != xNONE ; then Line 1016  if test "x${AD_OPTFILE}" != xNONE ; then
1016          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1017          RETVAL=$?          RETVAL=$?
1018          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1019              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1020              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1021              exit 1              exit 1
1022          fi          fi
# Line 833  fi Line 1031  fi
1031    
1032  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1033  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1034    if test ! "x$BASH" = x ; then
1035        # add a trailing space so that it works within the Makefile syntax (see below)
1036        BASH="$BASH "
1037    fi
1038  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1039      cat <<EOF 1>&2      cat <<EOF 1>&2
1040    
# Line 853  if test "x$CPP" = x ; then Line 1055  if test "x$CPP" = x ; then
1055      CPP=cpp      CPP=cpp
1056  fi  fi
1057  #EH3 === UGLY ===  #EH3 === UGLY ===
1058  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1059  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1060  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1061  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1062  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 897  EOF Line 1099  EOF
1099  fi  fi
1100  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1101    
1102    #  Check for broken *.F/*.f handling and fix if possible
1103    check_for_broken_Ff
1104    
1105    if test ! "x$MPI" = x ; then
1106          echo "  Turning on MPI cpp macros"
1107          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1108    fi
1109    
1110  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1111  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1112  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1113        program hello        program hello
1114        call system('echo hi')        call system('echo hi')
# Line 917  else Line 1126  else
1126  fi  fi
1127  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1128    
1129  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1130  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1131        program hello        program hello
1132        CHARACTER(128) string        CHARACTER(128) string
# Line 938  else Line 1147  else
1147  fi  fi
1148  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1149    
1150  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1151  check_HAVE_CLOC  check_HAVE_CLOC
1152  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1153      echo "yes"      echo "yes"
# Line 947  else Line 1156  else
1156  fi  fi
1157  rm -f genmake_t*  rm -f genmake_t*
1158    
1159  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1160  check_netcdf_libs  check_netcdf_libs
1161  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1162      echo "yes"      echo "yes"
# Line 957  fi Line 1166  fi
1166    
1167    
1168  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1169  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1170  for d in $MODS ; do  for d in $MODS ; do
1171      if test ! -d $d ; then      if test ! -d $d ; then
1172          echo          echo
1173          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1174          exit 1          exit 1
1175      else      else
1176          echo -n " $d"          printf " $d"
1177          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1178          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1179      fi      fi
# Line 1089  else Line 1298  else
1298          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1299          RETVAL=$?          RETVAL=$?
1300          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1301              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1302              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1303              exit 1              exit 1
1304          fi          fi
# Line 1097  else Line 1306  else
1306              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1307          done          done
1308          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1309          expand_pkg_groups          while ! expand_pkg_groups; do echo > /dev/null; done
1310          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1311      fi      fi
1312  fi  fi
1313    
1314  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1315    for i in $PACKAGES ; do
1316        echo $i >> ./.tmp_pack
1317    done
1318    for i in `grep  "-" ./.tmp_pack` ; do
1319        j=`echo $i | sed 's/[-]//'`
1320        DISABLE="$DISABLE $j"
1321    done
1322  pack=  pack=
1323  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1324      addit="t"      addit="t"
# Line 1119  PACKAGES="$pack" Line 1335  PACKAGES="$pack"
1335  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1336  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1337  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1338    # Test if each explicitly referenced package exists
1339  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1340      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1341        if test ! -d "$ROOTDIR/pkg/$j" ; then
1342          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1343          exit 1          exit 1
1344      fi      fi
1345      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1346  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1347  PACKAGES=  PACKAGES=
1348  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1349      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1350  done  done
1351    rm -f ./.tmp_pack
1352  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1353    
1354  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1372  rm -rf .links.tmp Line 1589  rm -rf .links.tmp
1589  mkdir .links.tmp  mkdir .links.tmp
1590  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1591  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1592  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1593  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1594  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1595  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1596  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1597  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1598  for d in $alldirs ; do  for d in $alldirs ; do
1599      deplist=      deplist=
# Line 1401  for d in $alldirs ; do Line 1618  for d in $alldirs ; do
1618                  case $extn in                  case $extn in
1619                      F)                      F)
1620                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1621                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1622                          ;;                          ;;
1623                      F90)                      F90)
1624                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1625                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1626                          ;;                          ;;
1627                      c)                      c)
1628                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1629                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1630                          ;;                          ;;
1631                      h)                      h)
1632                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1633                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1634                          ;;                          ;;
1635                      flow)                      flow)
1636                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1637                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1638                          ;;                          ;;
1639                  esac                  esac
1640              fi              fi
# Line 1446  echo "#    $MACHINE" >> $MAKEFILE Line 1663  echo "#    $MACHINE" >> $MAKEFILE
1663  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1664  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1665  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1666  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1667  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1668  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1669    
# Line 1514  FC = ${FC} Line 1731  FC = ${FC}
1731  # Fortran compiler  # Fortran compiler
1732  F90C = ${F90C}  F90C = ${F90C}
1733  # Link editor  # Link editor
1734  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1735    
1736  # Defines for CPP  # Defines for CPP
1737  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1546  cat csrclist.inc      >> $MAKEFILE Line 1763  cat csrclist.inc      >> $MAKEFILE
1763  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1764  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1765  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1766  echo               >> $MAKEFILE  echo >> $MAKEFILE
1767  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1768  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1769  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1770    echo >> $MAKEFILE
1771    echo '.SUFFIXES:' >> $MAKEFILE
1772    echo '.SUFFIXES: .o .F .p .'$FS' .c .F90 .'$FS90 >> $MAKEFILE
1773  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1774  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1775    
1776  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1777    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1778  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1779  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1780          @echo Creating \$@ ...          @echo Creating \$@ ...
1781          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1782  depend:  depend:
1783          @make links          @make links
1784          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1785          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1786            -rm -f makedepend.out
1787    
1788  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1789    
# Line 1577  output.txt: \$(EXECUTABLE) Line 1794  output.txt: \$(EXECUTABLE)
1794          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1795    
1796  clean:  clean:
1797          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1798  Clean:  Clean:
1799          @make clean          @make clean
1800          @make cleanlinks          @make cleanlinks
# Line 1592  CLEAN: Line 1809  CLEAN:
1809    
1810  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1811  makefile:  makefile:
1812          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
1813  cleanlinks:  cleanlinks:
1814          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1815    
1816  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets ($SPECIAL_FILES) which are create by make
1817  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
1818          @echo Creating \$@ ...          @echo Creating \$@ ...
1819          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1820  AD_CONFIG.h:  AD_CONFIG.h:
1821          @echo Creating \$@ ...          @echo Creating \$@ ...
1822          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1823  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
1824          @echo Creating \$@ ...          @echo Creating \$@ ...
1825          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
1826    
1827  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
1828  .F.f:  
1829    %.o : %.F
1830    
1831    .F.$FS:
1832          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1833  .f.o:  .$FS.o:
1834          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1835  .F90.f90:  .F90.$FS90:
1836          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1837  .f90.o:  .$FS90.o:
1838          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1839  .c.o:  .c.o:
1840          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1841    
1842  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
1843  .F.p:  .F.p:
1844          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1845  .p.f:  .p.$FS:
1846          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1847    
1848  #=========================================  #=========================================
# Line 1649  done Line 1869  done
1869    
1870  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1871  echo >> $MAKEFILE  echo >> $MAKEFILE
1872  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1873  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1874  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1875      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1876      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1877  done  done
1878  echo >> $MAKEFILE  echo >> $MAKEFILE
1879  rm -f ad_files  rm -f ad_files
# Line 1666  adtaf: ad_taf_output.f Line 1886  adtaf: ad_taf_output.f
1886  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1887    
1888  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1889          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1890          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1891          -rm -f ad_config.template          -rm -f ad_config.template
1892          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1698  ftltaf: ftl_taf_output.f Line 1918  ftltaf: ftl_taf_output.f
1918  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1919    
1920  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1921          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1922          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1923          -rm -f ftl_config.template          -rm -f ftl_config.template
1924          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1747  for i in $KPPFILES ; do Line 1967  for i in $KPPFILES ; do
1967      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
1968          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
1969      fi      fi
1970      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
1971  done  done
1972    
1973  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1757  for i in $NOOPTFILES ; do Line 1977  for i in $NOOPTFILES ; do
1977      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
1978          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
1979      fi      fi
1980      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
1981      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
1982  done  done
1983    
# Line 1771  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1991  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1991  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1992    
1993  # Create special header files  # Create special header files
1994  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1995  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
1996      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1997  else  else
# Line 1785  else Line 2005  else
2005      fi      fi
2006  fi  fi
2007  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2008      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2009  fi  fi
2010    
2011    
2012  #  Write the "state" for future records  #  Write the "state" for future records
2013  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2014      echo -n "" > genmake_state      printf "" > genmake_state
2015      for i in $gm_state ; do      for i in $gm_state ; do
2016          t1="t2=\$$i"          t1="t2=\$$i"
2017          eval $t1          eval $t1

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