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revision 1.70 by edhill, Sat Feb 28 05:01:12 2004 UTC revision 1.231 by jmc, Fri Jul 6 18:55:13 2012 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199  }  }
200    
201  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 206  test_for_string_in_file() {
206      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
207      RETVAL=$?      RETVAL=$?
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
210          grep -i "$strng" $file          grep -i "$strng" $file
211          return 1          exit 99
212      fi      fi
213      return 0      return 0
214  }  }
# Line 48  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 67  expand_pkg_groups() { Line 235  expand_pkg_groups() {
235          done          done
236          PACKAGES=$new_packages          PACKAGES=$new_packages
237          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
238            return $matched
239      else      else
240          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241      fi      fi
242  }  }
243    
244  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246    check_for_broken_Ff()  {
247        #  Do we have defaults for $FS and/or $FS90 ?
248        tfs=f
249        tfs9=f90
250        if test "x$FS" != x ; then
251            tfs="$FS"
252        fi
253        if test "x$FS90" != x ; then
254            tfs9="$FS90"
255        fi
256    
257      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
258      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
259      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
260      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`        write(*,*) 'hi'
261      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        stop
262      PLATFORM=$tmp2        end
263      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  EOF
264      echo "  The platform appears to be:  $PLATFORM"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
       
     echo "test" > test  
     ln -s ./test link  
265      RETVAL=$?      RETVAL=$?
266      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
267          LN="ln -s"          if test "x$FS" = x ; then
268      else              FS='for'
269          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
270          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
271          exit 1          else
272                cat <<EOF 2>&1
273    ERROR: Your file system cannot distinguish between *.F and *.f files
274      (fails the "cp" test) and this program cannot find a suitable
275      replacement extension.  Please try a different build environment or
276      contact the <MITgcm-support@mitgcm.org> list for help.
277    
278    EOF
279                exit -1
280            fi
281            return
282      fi      fi
283      rm -f test link      rm -f genmake_hello.*
284    
285      if test "x$CPP" = x ; then      #  Check the ability of ${MAKE} and ${LN} to use the current set
286          CPP="cpp -traditional -P"      #  of extensions.
287        cat <<EOF >> genmake_hello.F
288          program hello
289          write(*,*) 'hi'
290          stop
291          end
292    EOF
293        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
294        cat <<EOF >> $MAKEFILE
295    .SUFFIXES:
296    .SUFFIXES: .$tfs .F
297    .F.$tfs:
298            $LN \$< \$@
299    EOF
300        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
301        RETVAL=$?
302        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303            if test "x$FS" = x ; then
304                FS='for'
305                FS90='fr9'
306                check_for_broken_Ff
307            else
308                cat <<EOF 2>&1
309    ERROR: Your file system cannot distinguish between *.F and *.f files
310      (fails the "make/ln" test) and this program cannot find a suitable
311      replacement extension.  Please try a different build environment or
312      contact the <MITgcm-support@mitgcm.org> list for help.
313    
314    EOF
315                exit -1
316                return
317            fi
318      fi      fi
319        rm -f genmake_hello.* $MAKEFILE
320        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
321    
322        #  If we make it here, use the extensions
323        FS=$tfs
324        FS90=$tfs9
325        return
326    }
327    
328    look_for_makedepend()  {
329    
330      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
331      #  most often distributed with XFree86 or with an XFree86 source      #  most often distributed with XFree86 or with an XFree86 source
# Line 118  find_possible_configs()  { Line 345  find_possible_configs()  {
345      #    3) locally build and use the cyrus implementation      #    3) locally build and use the cyrus implementation
346      #    4) fall back to the buggy local xmakedpend script      #    4) fall back to the buggy local xmakedpend script
347      #      #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370        which makedepend >& /dev/null          which makedepend > /dev/null 2>&1
371        RETVAL=$?          RV0=$?
372        if test ! "x${RETVAL}" = x0 ; then          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
373           echo "    a system-default makedepend was not found."          #  echo 'MAKEFILE="'$MAKEFILE'"'
374            cat <<EOF >> $MAKEFILE
375           #  Try to build the cyrus impl  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376           rm -f ./genmake_cy_md  #
377           (  #   Some "makedepend" implementations will die if they cannot
378               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \  #   find a Makefile -- so this file is here to gives them an
379                   &&  ./configure > /dev/null 2>&1  \  #   empty one to find and parse.
380                   &&  make > /dev/null 2>&1  \  EOF
381                   &&  ./makedepend ifparser.c > /dev/null 2>&1  \          cat <<EOF >> genmake_tc.f
382                   &&  echo "true"        program test
383           ) > ./genmake_cy_md        write(*,*) 'test'
384           grep true ./genmake_cy_md > /dev/null 2>&1        stop
385           RETVAL=$?        end
386           if test "x$RETVAL" = x0 ; then  EOF
387               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
388           else          RV1=$?
389               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          test -f $MAKEFILE  &&  rm -f $MAKEFILE
390           fi          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391           rm -f ./genmake_cy_md          if test "x${RV0}${RV1}" = x00 ; then
392        fi              MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394            else
395                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
396                #  Try to build the cyrus implementation
397                build_cyrus_makedepend
398                RETVAL=$?
399                if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403                fi
404            fi
405      fi      fi
406    }
407    
408      # look for possible fortran compilers  build_cyrus_makedepend()  {
409      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
410      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
411        rm -f ./genmake_cy_md
412        (
413            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
414                &&  ./configure > /dev/null 2>&1  \
415                &&  make > /dev/null 2>&1
416            if test -x ./makedepend.exe ; then
417                $LN ./makedepend.exe ./makedepend
418            fi
419            ./makedepend ifparser.c > /dev/null 2>&1  \
420                &&  echo "true"
421        ) > ./genmake_cy_md
422        grep true ./genmake_cy_md > /dev/null 2>&1
423        RETVAL=$?
424        rm -f ./genmake_cy_md
425        if test "x$RETVAL" = x0 ; then
426            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428            return 0
429        else
430            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431            return 1
432        fi
433    }
434    
435    build_embed_encode()
436    {
437        printf "  building the embed-encode utility...  "
438        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
439            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
440                echo
441                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
442                echo
443                EMBED_SRC=f
444                return 1
445            fi
446            clist="cc gcc c89 $CC"
447            for ic in $clist ; do
448                comm="$ic -o encode_files encode_files.c"
449                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450                RETVAL=$?
451                if test "x$RETVAL" = x0 ; then
452                    echo "OK"
453                    return 0
454                fi
455            done
456            echo
457            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
458            echo "      so it has been disabled"
459            echo
460            EMBED_SRC=f
461            return 1
462        fi
463        echo "OK"
464    }
465    
466    #  look for possible C compilers
467    look_for_C_compilers() {
468        echo >> $LOGFILE
469        echo "running: look_for_C_compilers()" >> $LOGFILE
470        rm -f ./genmake_hello.c  ./genmake_hello
471        cat >> genmake_hello.c << EOF
472    #include <stdio.h>
473    int main(int argc, char **argv) {
474      printf("Hello!\n");
475      return 0;
476    }
477    EOF
478        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
479        p_CC=
480      for c in $tmp ; do      for c in $tmp ; do
481          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
482          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
483            $COMM >> $LOGFILE 2>&1
484            RETVAL=$?
485            if test "x${RETVAL}" = x0 ; then
486                echo " $c test successful" >> $LOGFILE
487                p_CC="$p_CC $c"
488            fi
489        done
490        rm -f ./genmake_hello.c ./genmake_hello
491        if test "x${p_CC}" = x ; then
492            cat 1>&2 <<EOF
493    
494    Error: No C compilers were found in your path.  Please specify one using:
495    
496        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
497        2) the CC or MITGCM_CC environment variables.
498    
499    EOF
500            exit 1
501        else
502            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
503            if test "x$CC" = x ; then
504                CC=`echo $p_CC | $AWK '{print $1}'`
505                echo "  Setting C compiler to: "$CC
506            fi
507        fi
508        echo " --> set CC='$CC'" >> $LOGFILE
509    }
510    
511    # Guess possible config options for this host
512    find_possible_optfile()  {
513    
514        echo >> $LOGFILE
515        echo "running: find_possible_optfile()" >> $LOGFILE
516        tmp1=`uname`"_"`uname -m`
517        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
518        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
519        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
520        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
521        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
522        PLATFORM=$tmp3
523        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
524        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
525        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
526    
527        #================================================================
528        #  look for possible FORTRAN compilers
529        echo "  look for possible FORTRAN compilers" >> $LOGFILE
530        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
531        p_FC=
532        rm -f ./genmake_hello.f
533        cat >> genmake_hello.f <<EOF
534        program hello        program hello
535        do i=1,3        do i=1,3
536          print *, 'hello world : ', i          print *, 'hello world : ', i
537        enddo        enddo
538        end        end
539  EOF  EOF
540          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
541            COMM="$f -o genmake_hello genmake_hello.f"
542            echo $COMM >> $LOGFILE
543            $COMM >> $LOGFILE 2>&1
544          RETVAL=$?          RETVAL=$?
545          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
546              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
547                p_FC="$p_FC $f"
548          fi          fi
549      done      done
550      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
551      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
552          cat 1>&2 <<EOF          cat 1>&2 <<EOF
553    
# Line 170  Error: No Fortran compilers were found i Line 555  Error: No Fortran compilers were found i
555    
556      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
557      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
558      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
559    
560  EOF  EOF
561          exit 1          exit 1
562      else      else
563          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
564          echo "   "$p_FC      fi
565          if test "x$FC" = x ; then  
566              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
567              echo "  Setting FORTRAN compiler to: "$FC      #  that has a correctly-named optfile
568          fi      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
569            for i in $p_FC ; do
570                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
571                if test -r $OPTFILE ; then
572                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
573                    break
574                fi
575            done
576      fi      fi
577    
578      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 189  EOF Line 581  EOF
581               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
582          fi          fi
583      fi      fi
584  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          cat 1>&2 <<EOF          cat 1>&2 <<EOF
587    
# Line 215  Error: No options file was found in:  $R Line 597  Error: No options file was found in:  $R
597  EOF  EOF
598          exit 1          exit 1
599      fi      fi
600        
601  #     # look for possible MPI libraries  #     # look for possible MPI libraries
602  #     mpi_libs=  #     mpi_libs=
603  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 234  EOF Line 616  EOF
616  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
617  #           a=`cat out`  #           a=`cat out`
618  #           for i in $a ; do  #           for i in $a ; do
619  #               case $i in  #               case $i in
620  #                   -*)  #                   -*)
621  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
622  #               esac  #               esac
# Line 244  EOF Line 626  EOF
626  #       fi  #       fi
627  #       rm -f test.f out  #       rm -f test.f out
628  #     fi  #     fi
   
629  }  }
630    
631  #  Parse the package dependency information  #  Parse the package dependency information
# Line 253  get_pdepend_list()  { Line 634  get_pdepend_list()  {
634      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
635      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
636      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
637          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
638          > ./.pd_tmp          > ./.pd_tmp
639        RETVAL=$?
640        if test ! "x${RETVAL}" = x0 ; then
641          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
642          exit 1
643        fi
644      . ./.pd_tmp      . ./.pd_tmp
645      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from $PATH/include, link to libraries  
           from $PATH/lib and use binaries from $PATH/bin.  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
646  }  }
647    
648  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
649  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
650    
651        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
652        if test ! "x$FC_NAMEMANGLE" = x ; then
653            return 0
654        fi
655        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
656    
657      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
658        
659      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
660  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
661  EOF  EOF
662      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
663        echo ' '$COMM >> $LOGFILE
664        $COMM >> $LOGFILE 2>&1
665      RETVAL=$?      RETVAL=$?
666      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
667          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
668          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
669    
670  WARNING: C test compile fails   WARNING: C test compile fails
671  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
672  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
673  EOF  EOF
674          return 1          return 1
675      fi      fi
676      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
677      RETVAL=$?      RETVAL=$?
678      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
679          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
680          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
681    
682  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
683  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
684  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
685  EOF  EOF
686          return 1          return 1
687      fi      fi
688      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
689        subroutine tcall( string )        subroutine tcall( string )
690        character*(*) string        character*(*) string
691        call tsub( string )        call tsub( string )
692        end        end
693  EOF  EOF
694      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
695        echo ' '$COMM >> $LOGFILE
696        $COMM >> $LOGFILE 2>&1
697      RETVAL=$?      RETVAL=$?
698      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
699          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
700          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
701    
702  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
703  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
704  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
705  EOF  EOF
706          return 1          return 1
707      fi      fi
708      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
709      RETVAL=$?      RETVAL=$?
710      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
711          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
712          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
713    
714  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
715  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
716  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
717  EOF  EOF
718          return 1          return 1
719      fi      fi
# Line 449  EOF Line 739  EOF
739    
740      #  cleanup the testing files      #  cleanup the testing files
741      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
742    
743        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
744    }
745    
746  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
747        echo >> $LOGFILE
748        echo "running: check_HAVE_CLOC()" >> $LOGFILE
749      get_fortran_c_namemangling      get_fortran_c_namemangling
750      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
751  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 469  void FC_NAMEMANGLE(cloc) ( double *curti Line 762  void FC_NAMEMANGLE(cloc) ( double *curti
762   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
763  }  }
764  EOF  EOF
765      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
766        echo $COMM >> $LOGFILE
767        $COMM >> $LOGFILE 2>&1
768      RET_C=$?      RET_C=$?
769      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
770        program hello        program hello
771        Real*8 wtime        REAL*8 wtime
772        external cloc        external cloc
773        call cloc(wtime)        call cloc(wtime)
774        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
775        end program hello        end
776  EOF  EOF
777      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
778        echo $COMM >> $LOGFILE
779        $COMM >> $LOGFILE 2>&1
780      RET_F=$?      RET_F=$?
781      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
782      RETVAL=$?      RETVAL=$?
783      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
784          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
785      fi      fi
786      rm -f genmake_tc*      rm -f genmake_tc*
787        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
788    }
789    
790    check_HAVE_SIGREG()  {
791        if test ! "x$HAVE_SIGREG" = x ; then
792            return
793        fi
794        echo >> $LOGFILE
795        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
796        get_fortran_c_namemangling
797        cat <<EOF > genmake_tc_1.c
798    $FC_NAMEMANGLE
799    #include <stdlib.h>
800    #include <stdio.h>
801    #include <signal.h>
802    #include <errno.h>
803    #include <ucontext.h>
804    
805    int * ip;
806    
807    static void killhandler(
808        unsigned int sn, siginfo_t  si, struct ucontext *sc )
809    {
810        *ip = *ip + 1;
811        return;
812  }  }
813    
814    void FC_NAMEMANGLE(sigreg) (int * aip)
815    {
816        struct sigaction s;
817        ip = aip;
818        s.sa_flags = SA_SIGINFO;
819        s.sa_sigaction = (void *)killhandler;
820        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
821            printf("Sigaction returned error = %d\n", errno);
822            exit(0);
823        }
824        return;
825    }
826    EOF
827        COMM="$CC $CFLAGS -c genmake_tc_1.c"
828        echo $COMM >> $LOGFILE
829        $COMM >> $LOGFILE 2>&1
830        RET_C=$?
831        cat <<EOF > genmake_tc_2.$FS
832          program hello
833          integer anint
834          common /iv/ anint
835          external sigreg
836          call sigreg(anint)
837          end
838    EOF
839        cat genmake_tc_2.$FS >> $LOGFILE
840        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
841        echo $COMM >> $LOGFILE
842        $COMM >> $LOGFILE 2>&1
843        RETVAL=$?
844        if test "x$RETVAL" = x0 ; then
845            HAVE_SIGREG=t
846        fi
847        rm -f genmake_tc*
848        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
849    }
850    
851    check_HAVE_SETRLSTK()  {
852        if test ! "x$HAVE_SETRLSTK" = x ; then
853            return
854        fi
855        echo >> $LOGFILE
856        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <sys/time.h>
861    #include <sys/resource.h>
862    #include <unistd.h>
863    void FC_NAMEMANGLE(setrlstk) ()
864    {
865        struct rlimit rls;
866        rls.rlim_cur = RLIM_INFINITY;
867        rls.rlim_max = RLIM_INFINITY;
868        setrlimit(RLIMIT_STACK, &rls);
869        return;
870    }
871    EOF
872        COMM="$CC $CFLAGS -c genmake_tc_1.c"
873        echo $COMM >> $LOGFILE
874        $COMM >> $LOGFILE 2>&1
875        RET_C=$?
876        cat <<EOF > genmake_tc_2.$FS
877          program hello
878          external setrlstk
879          call setrlstk()
880          end
881    EOF
882        cat genmake_tc_2.$FS >> $LOGFILE
883        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
884        echo $COMM >> $LOGFILE
885        $COMM >> $LOGFILE 2>&1
886        RETVAL=$?
887        if test "x$RETVAL" = x0 ; then
888            HAVE_SETRLSTK=t
889        fi
890        rm -f genmake_tc*
891        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
892    }
893    
894    check_HAVE_STAT()  {
895        echo >> $LOGFILE
896        echo "running: check_HAVE_STAT()" >> $LOGFILE
897        get_fortran_c_namemangling
898        cat <<EOF > genmake_tc_1.c
899    $FC_NAMEMANGLE
900    #include <stdio.h>
901    #include <stdlib.h>
902    #include <unistd.h>
903    #include <sys/stat.h>
904    #include <sys/types.h>
905    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
906    {
907        char name[512];
908        struct stat astat;
909    
910        name[0] = 'a'; name[1] = '\0';
911        if (! stat(name, &astat))
912            *nbyte = (int)(astat.st_size);
913        else
914            *nbyte = -1;
915    }
916    EOF
917        COMM="$CC $CFLAGS -c genmake_tc_1.c"
918        echo $COMM >> $LOGFILE
919        $COMM >> genmake_tc.log 2>&1
920        RET_C=$?
921        cat <<EOF > genmake_tc_2.$FS
922          program hello
923          integer nbyte
924          call tfsize(nbyte)
925          print *," HELLO WORLD", nbyte
926          end
927    EOF
928        cat genmake_tc_2.$FS >> $LOGFILE
929        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
930        echo $COMM >> $LOGFILE
931        $COMM >> genmake_tc.log 2>&1
932        RETVAL=$?
933        if test "x$RETVAL" = x0 ; then
934            HAVE_STAT=t
935        fi
936        rm -f genmake_tc*
937        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
938    }
939    
940  check_netcdf_libs()  {  check_netcdf_libs()  {
941        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
942            return
943        fi
944        echo >> $LOGFILE
945        echo "running: check_netcdf_libs()" >> $LOGFILE
946      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
947        program fgennc        program fgennc
948  #include "netcdf.inc"  #include "netcdf.inc"
949    EOF
950        if test ! "x$MPI" = x ; then
951            echo '#include "mpif.h"' >> genmake_tnc.F
952        fi
953        cat <<EOF >> genmake_tnc.F
954        integer iret, ncid, xid        integer iret, ncid, xid
955        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
956        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 504  check_netcdf_libs()  { Line 960  check_netcdf_libs()  {
960        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
961        end        end
962  EOF  EOF
963      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
964          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
965        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
966        RET_CPP=f
967        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
968        echo "$COMM" >> genmake_tnc.log
969        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
970        if test "x$RET_CPP" = xf ; then
971            echo "  WARNING: CPP failed to pre-process the netcdf test." \
972                >> genmake_tnc.log
973            echo "    Please check that \$INCLUDES is properly set." \
974                >> genmake_tnc.log
975        fi
976        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
977        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
978        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
979            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
980      RET_COMPILE=$?      RET_COMPILE=$?
981      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> $LOGFILE
982      RETVAL=$?  
983      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
984        #EH3  execution or cannot support it (eg. cross-compilers)
985        #EH3
986        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
987        #EH3 RETVAL=$?
988        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
989    
990        if test "x$RET_COMPILE" = x0 ; then
991          HAVE_NETCDF=t          HAVE_NETCDF=t
992            echo "check_netcdf: successful" >> $LOGFILE
993      else      else
994          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
995          $CPP genmake_tnc.F > genmake_tnc.f  \          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
996              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
997              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
998            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
999            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1000                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1001                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1002          RET_COMPILE=$?          RET_COMPILE=$?
1003          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          echo >> $LOGFILE
1004          RETVAL=$?          cat genmake_tnc.log >> $LOGFILE
1005          if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1006              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1007              HAVE_NETCDF=t              HAVE_NETCDF=t
1008                echo "check_netcdf: successful" >> $LOGFILE
1009          else          else
1010              cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdff" added to the libs
1011                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1012                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1013                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1014                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1015                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1016                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1017                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1018                RET_COMPILE=$?
1019                echo >> $LOGFILE
1020                cat genmake_tnc.log >> $LOGFILE
1021                if test "x$RET_COMPILE" = x0 ; then
1022                    LIBS="$LIBS -lnetcdff -lnetcdf"
1023                    HAVE_NETCDF=t
1024                    echo "check_netcdf: successful" >> $LOGFILE
1025                fi
1026          fi          fi
1027      fi      fi
1028      rm -f genmake_tnc*      rm -f genmake_tnc*
1029        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1030  }  }
1031    
1032    
   
1033  ###############################################################################  ###############################################################################
1034  #   Sequential part of script starts here  #   Sequential part of script starts here
1035  ###############################################################################  ###############################################################################
# Line 542  PLATFORM= Line 1041  PLATFORM=
1041  LN=  LN=
1042  S64=  S64=
1043  KPP=  KPP=
1044  FC=  #FC=
1045  CPP=  #CC=gcc
1046    #CPP=
1047  LINK=  LINK=
1048  DEFINES=  DEFINES=
1049  PACKAGES=  PACKAGES=
1050  ENABLE=  ENABLE=
1051  DISABLE=  DISABLE=
1052  MAKEFILE=  # MAKEFILE=
1053  MAKEDEPEND=  # MAKEDEPEND=
1054  PDEPEND=  PKG_DEPEND=
1055  DUMPSTATE=t  PKG_GROUPS=
1056  PDEFAULT=  DUMPSTATE=f
1057  OPTFILE=  OPTFILE=
1058  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1059  FFLAGS=  FFLAGS=
1060  FOPTIM=  FOPTIM=
1061    FEXTRAFLAGS=
1062    USE_EXTENDED_SRC=
1063    EXTENDED_SRC_FLAG=
1064    GET_FC_VERSION=
1065  CFLAGS=  CFLAGS=
1066  KFLAGS1=  KFLAGS1=
1067  KFLAGS2=  KFLAGS2=
# Line 568  NOOPTFILES= Line 1072  NOOPTFILES=
1072  NOOPTFLAGS=  NOOPTFLAGS=
1073  MPI=  MPI=
1074  MPIPATH=  MPIPATH=
1075    OMP=
1076    OMPFLAG=
1077    USE_R4=
1078    TS=
1079    PAPIS=
1080    PCLS=
1081    FOOLAD=
1082    PAPI=
1083    PCL=
1084    HPMT=
1085    GSL=
1086    DEVEL=
1087    HAVE_TEST_L=
1088    
1089  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1090  HAVE_SYSTEM=  HAVE_SYSTEM=
1091  HAVE_FDATE=  HAVE_FDATE=
1092  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1093  HAVE_CLOC=  HAVE_CLOC=
1094    # HAVE_SETRLSTK=
1095    HAVE_STAT=
1096  HAVE_NETCDF=  HAVE_NETCDF=
1097    HAVE_ETIME=
1098    IGNORE_TIME=
1099    
1100  MODS=  MODS=
1101  TOOLSDIR=  TOOLSDIR=
# Line 582  SOURCEDIRS= Line 1103  SOURCEDIRS=
1103  INCLUDEDIRS=  INCLUDEDIRS=
1104  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1105    
1106    G2ARGS=
1107    BASH=
1108  PWD=`pwd`  PWD=`pwd`
1109  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1110  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1111  THISHOSTNAME=`hostname`  EMBED_SRC=
1112    THISHOST=`hostname`
1113  THISCWD=`pwd`  THISCWD=`pwd`
1114  THISDATE=`date`  THISDATE=`date`
1115    THISUSER=`echo $USER`
1116    THISVER=
1117  MACHINE=`uname -a`  MACHINE=`uname -a`
1118  EXECUTABLE=  EXECUTABLE=
1119  EXEHOOK=  EXEHOOK=
1120  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1121  IEEE=  IEEE=
1122  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1123      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1124  fi  fi
1125    FS=
1126    FS90=
1127    
1128  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1129  AD_OPTFILE=  AD_OPTFILE=
# Line 611  FTL_TAF_FLAGS= Line 1138  FTL_TAF_FLAGS=
1138  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1139  TAMC_EXTRA=  TAMC_EXTRA=
1140    
   
1141  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1142  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1143  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1144    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1145    
1146  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1147  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1148  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1149  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1150  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1151  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1152    
1153  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1154  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1155  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1156  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1157    
1158  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1159  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1160    
1161  cat <<EOF  cat <<EOF
1162    
1163  GENMAKE :  GENMAKE :
1164    
1165  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1166  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1167    or for more detail see the Developer's HOWTO manual at:
1168    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1169    
1170  EOF  EOF
1171    
1172    LOGFILE="genmake.log"
1173    #- clean-up previous genmake logfiles:
1174    rm -f genmake_state genmake_*optfile $LOGFILE
1175    
1176  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1177  gm_local="genmake_local"  gm_local="genmake_local"
1178  for i in . $MODS ; do  printf "  getting local config information:  "
1179      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1180      echo "using $gm_local"      echo "using $gm_local"
1181      . $gm_local      . $gm_local
1182      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 660  else Line 1185  else
1185      echo "none found"      echo "none found"
1186  fi  fi
1187    
1188  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1189  #parse_options  #parse_options
1190  ac_prev=  ac_prev=
1191  for ac_option ; do  for ac_option in "$@" ; do
1192    
1193        G2ARGS="$G2ARGS \"$ac_option\""
1194    
1195      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1196      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 680  for ac_option ; do Line 1198  for ac_option ; do
1198          ac_prev=          ac_prev=
1199          continue          continue
1200      fi      fi
1201        
1202      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1203        
1204      case $ac_option in      case $ac_option in
1205                    
1206          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 701  for ac_option ; do Line 1219  for ac_option ; do
1219              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1220                    
1221          -pdepend | --pdepend)          -pdepend | --pdepend)
1222              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1223          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1224              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1225                    
1226          -pdefault | --pdefault)          -pgroups | --pgroups)
1227              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1228          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1229              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1230                    
1231          -make | --make | -m | --m)          -make | --make | -m | --m)
1232              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1233          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1234              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1235                    
1236            -bash | --bash)
1237                ac_prev=BASH ;;
1238            -bash=* | --bash=*)
1239                BASH=$ac_optarg ;;
1240            
1241          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1242              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1243          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
# Line 761  for ac_option ; do Line 1284  for ac_option ; do
1284  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1285  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1286  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1287                        
1288            -cc | --cc)
1289                ac_prev=CC ;;
1290            -cc=* | --cc=*)
1291                CC=$ac_optarg ;;
1292            
1293          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1294              ac_prev=FC ;;              ac_prev=FC ;;
1295          -fc=* | --fc=*)          -fc=* | --fc=*)
1296              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1297                    
1298            -fs | --fs)
1299                ac_prev=FS ;;
1300            -fs=* | --fs=*)
1301                FS=$ac_optarg ;;
1302            
1303            -fs90 | --fs90)
1304                ac_prev=FS90 ;;
1305            -fs90=* | --fs90=*)
1306                FS90=$ac_optarg ;;
1307            
1308            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1309                USE_R4=true ;;
1310    
1311          -ieee | --ieee)          -ieee | --ieee)
1312              IEEE=true ;;              IEEE=true ;;
1313          -noieee | --noieee)          -noieee | --noieee)
1314              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1315            -devel | --devel)
1316                IEEE=true ; DEVEL=true ;;
1317            -gsl | --gsl)
1318                GSL=true ;;
1319    
1320            -ts | --ts)
1321                TS=true ;;
1322            -papis | --papis)
1323                PAPIS=true ;;
1324            -pcls | --pcls)
1325                PCLS=true ;;
1326            -foolad | --foolad)
1327                FOOLAD=true ;;
1328            -papi | --papi)
1329                PAPI=true ;;
1330            -pcl | --pcl)
1331                PCL=true ;;
1332            -hpmt | --hpmt)
1333                HPMT=true ;;
1334    
1335          -mpi | --mpi)          -mpi | --mpi)
1336              MPI=true ;;              MPI=true ;;
# Line 778  for ac_option ; do Line 1338  for ac_option ; do
1338              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1339              MPI=true ;;              MPI=true ;;
1340                    
1341  #       -jam | --jam)          -omp | --omp)
1342  #           JAM=1 ;;              OMP=true ;;
1343  #       -nojam | --nojam)          -omp=* | --omp=*)
1344  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1345                OMP=true ;;
1346                    
1347          -ds | --ds)          -ds | --ds)
1348              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1349                    
1350            -extra_flag | --extra_flag)
1351                ac_prev=FEXTRAFLAGS ;;
1352            -extra_flag=* | --extra_flag=*)
1353                FEXTRAFLAGS=$ac_optarg ;;
1354            
1355          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1356              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1357          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 795  for ac_option ; do Line 1361  for ac_option ; do
1361              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1362          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1363              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1364            
1365            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1366                IGNORE_TIME="-DIGNORE_TIME" ;;
1367    
1368            -es | --es | -embed-source | --embed-source)
1369                EMBED_SRC=t ;;
1370    
1371          -*)          -*)
1372              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 807  for ac_option ; do Line 1379  for ac_option ; do
1379              ;;              ;;
1380                    
1381      esac      esac
1382        
1383  done  done
1384    
1385  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1386      echo      echo
1387      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1388      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1389      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1390      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1391        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1392        echo "WARNING: ignore \"./.genmakerc\" and continue."
1393      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1394  fi  fi
1395    
1396    #  Find the MITgcm ${ROOTDIR}
1397  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1398      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1399        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1400          ROOTDIR=".."          ROOTDIR=".."
1401      else      else
1402          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1403              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1404                  ROOTDIR=$d                  ROOTDIR=$d
1405                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1406                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1407                  break                  break
1408              fi              fi
1409          done          done
# Line 847  if test ! -d ${ROOTDIR} ; then Line 1420  if test ! -d ${ROOTDIR} ; then
1420      exit 1      exit 1
1421  fi  fi
1422    
1423  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1424    version_file="${ROOTDIR}/doc/tag-index"
1425    if test -f $version_file ; then
1426        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1427    #-  remove ./BUILD_INFO.h file if older than version_file
1428        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1429            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1430            rm -f ./BUILD_INFO.h
1431        fi
1432    fi
1433    
1434    if test "x$MAKEFILE" = x ; then
1435        MAKEFILE="Makefile"
1436    fi
1437    
1438    echo "  getting OPTFILE information:"
1439  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1440      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1441          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1442          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1443          find_possible_configs          find_possible_optfile
1444      else      else
1445          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1446      fi      fi
# Line 863  if test "x$OPTFILE" != xNONE ; then Line 1451  if test "x$OPTFILE" != xNONE ; then
1451          . "$OPTFILE"          . "$OPTFILE"
1452          RETVAL=$?          RETVAL=$?
1453          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1454              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1455              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1456              exit 1              exit 1
1457          fi          fi
1458          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1459              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1460          fi          fi
1461      else      else
# Line 876  if test "x$OPTFILE" != xNONE ; then Line 1464  if test "x$OPTFILE" != xNONE ; then
1464      fi      fi
1465  fi  fi
1466    
1467  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1468  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1469      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1470          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 890  if test "x${AD_OPTFILE}" != xNONE ; then Line 1478  if test "x${AD_OPTFILE}" != xNONE ; then
1478          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1479          RETVAL=$?          RETVAL=$?
1480          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1481              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1482              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1483              exit 1              exit 1
1484          fi          fi
1485          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1486              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1487          fi          fi
1488      else      else
# Line 903  if test "x${AD_OPTFILE}" != xNONE ; then Line 1491  if test "x${AD_OPTFILE}" != xNONE ; then
1491      fi      fi
1492  fi  fi
1493    
1494  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1495    #  Set default values if not set by the optfile
1496    #
1497    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1498  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1499    if test ! "x$BASH" = x ; then
1500        # add a trailing space so that it works within the Makefile syntax (see below)
1501        BASH="$BASH "
1502    fi
1503  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1504      cat <<EOF 1>&2      cat <<EOF 1>&2
1505    
# Line 915  Error: no Fortran compiler: please speci Line 1510  Error: no Fortran compiler: please speci
1510  EOF  EOF
1511      exit 1      exit 1
1512  fi  fi
1513    if test "x$GET_FC_VERSION" != x ; then
1514      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1515      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1516      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1517      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1518      if test -s genmake_fc_vers1 ; then
1519        cat genmake_fc_vers1 >> $LOGFILE
1520      else
1521        cat genmake_fc_vers2 >> $LOGFILE
1522      fi
1523      echo "<-- compiler version ----" >> $LOGFILE
1524      rm -f genmake_fc_vers1 genmake_fc_vers2
1525    fi
1526    
1527    if test "x$CC" = x ; then
1528        look_for_C_compilers
1529    fi
1530    
1531  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1532      LINK=$FC      LINK=$FC
1533  fi  fi
# Line 922  if test "x$MAKE" = x ; then Line 1535  if test "x$MAKE" = x ; then
1535      MAKE="make"      MAKE="make"
1536  fi  fi
1537  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1538      CPP=cpp      CPP="cpp -traditional -P"
1539  fi  fi
1540  #EH3 === UGLY ===  #EH3 === UGLY ===
1541  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1542  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1543  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1544  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1545  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 949  EOF Line 1562  EOF
1562  else  else
1563      rm -f test_cpp      rm -f test_cpp
1564  fi  fi
1565  if test "x$MAKEDEPEND" = x ; then  
1566      MAKEDEPEND=makedepend  look_for_makedepend
1567  fi  
1568    #  Check that soft-link command is set and usable
1569  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1570      LN="ln -s"      LN="ln -s"
1571  fi  fi
# Line 961  RETVAL=$? Line 1575  RETVAL=$?
1575  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1576      cat <<EOF 1>&2      cat <<EOF 1>&2
1577    
1578  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1579    command in the optfile.    command in the optfile.
1580    
1581  EOF  EOF
1582      exit 1      exit 1
1583  fi  fi
1584    test -L genmake_tlink > /dev/null 2>&1
1585    RETVAL=$?
1586    if test "x$RETVAL" = x0 ; then
1587        HAVE_TEST_L=t
1588    fi
1589  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1590    
1591    #  Check for broken *.F/*.f handling and fix if possible
1592    check_for_broken_Ff
1593    
1594  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1595        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1596        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1597  fi  fi
1598    if test ! "x$OMP" = x ; then
1599          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1600          FFLAGS="$FFLAGS $OMPFLAG"
1601          F90FLAGS="$F90FLAGS $OMPFLAG"
1602          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1603    fi
1604    
1605    if test ! "x$USE_R4" = x ; then
1606          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1607          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1608    fi
1609    
1610    if test ! "x$TS" = x ; then
1611          echo "  Turning on timing per timestep"
1612          if test ! "x$FOOLAD" = x ; then
1613                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1614          else
1615                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1616          fi
1617          PACKAGES="$PACKAGES showflops"
1618    fi
1619    if test ! "x$PAPIS" = x ; then
1620          echo "  Turning on PAPI flop summary per timestep"
1621          echo "  Please make sure PAPIINC, PAPILIB are defined"
1622          if test ! "x$FOOLAD" = x ; then
1623                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1624          else
1625                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1626          fi
1627          INCLUDES="$INCLUDES $PAPIINC"
1628          LIBS="$LIBS $PAPILIB"
1629          PACKAGES="$PACKAGES showflops"
1630    fi
1631    if test ! "x$PCLS" = x ; then
1632          echo "  Turning on PCL counter summary per timestep"
1633          echo "  Please make sure PCLINC, PCLLIB are defined"
1634          if test ! "x$FOOLAD" = x ; then
1635                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1636          else
1637                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1638          fi
1639          INCLUDES="$INCLUDES $PCLINC"
1640          LIBS="$LIBS $PCLLIB"
1641          PACKAGES="$PACKAGES showflops"
1642    fi
1643    if test ! "x$PAPI" = x ; then
1644          if test ! "x$PAPIS" = x ; then
1645              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1646              echo "  Sticking with PAPI flop summary per timestep!"
1647          else
1648              echo "  Turning on performance analysis with PAPI"
1649              echo "  Please make sure PAPIINC, PAPILIB are defined"
1650              DEFINES="$DEFINES -DUSE_PAPI"
1651              INCLUDES="$INCLUDES $PAPIINC"
1652              LIBS="$LIBS $PAPILIB"
1653          fi
1654    fi
1655    if test ! "x$PCL" = x ; then
1656          if test ! "x$PCLS" = x ; then
1657              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1658              echo "  Sticking with PCL flop summary per timestep!"
1659          else
1660              echo "  Turning on performance analysis with PCL"
1661              echo "  Please make sure PCLINC, PCLLIB are defined"
1662              DEFINES="$DEFINES -DUSE_PCL"
1663              INCLUDES="$INCLUDES $PCLINC"
1664              LIBS="$LIBS $PCLLIB"
1665          fi
1666    fi
1667    if test ! "x$HPMT" = x ; then
1668          if test ! "x$PAPI" = x ; then
1669              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1670              echo "  Sticking with PAPI!"
1671          else if test ! "x$PCL" = x ; then
1672              echo "  PCL and the HPM Toolkit cannot co-exist!"
1673              echo "  Sticking with PCL!"
1674          else
1675              echo "  Turning on performance analysis with the HPM Toolkit"
1676              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1677              DEFINES="$DEFINES -DUSE_LIBHPM"
1678              INCLUDES="$INCLUDES $HPMTINC"
1679              LIBS="$LIBS $HPMTLIB"
1680          fi
1681          fi
1682    fi
1683    if test ! "x$GSL" = x ; then
1684          echo "  Turning on use of GSL to control floating point calculations"
1685          echo "  Please make sure GSLINC, GSLLIB are defined"
1686          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1687          INCLUDES="$INCLUDES $GSLINC"
1688          LIBS="$LIBS $GSLLIB"
1689    fi
1690    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1691    if test ! "x$USE_EXTENDED_SRC" = x ; then
1692          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1693          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1694    fi
1695    
1696  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1697  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1698  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1699        program hello        program hello
1700        call system('echo hi')        call system('echo hi')
1701        end        end
1702  EOF  EOF
1703  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1704  RETVAL=$?  RETVAL=$?
1705  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1706      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 993  else Line 1712  else
1712  fi  fi
1713  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1714    
1715  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1716  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1717        program hello        program hello
1718        CHARACTER(128) string        CHARACTER*(128) string
1719        string = ' '        string = ' '
1720        call fdate( string )        call fdate( string )
1721        print *, string        print *, string
1722        end        end
1723  EOF  EOF
1724  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1725  RETVAL=$?  RETVAL=$?
1726  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1727      HAVE_FDATE=t      HAVE_FDATE=t
1728      DEFINES="$DEFINES -DHAVE_FDATE"      DEFINES="$DEFINES -DHAVE_FDATE"
1729      echo "yes"      echo "yes"
1730  else  else
1731      HAVE_FDATE=      HAVE_FDATE=
1732        echo "no"
1733    fi
1734    rm -f genmake_tcomp*
1735    
1736    printf "  Do we have the etime() command using $FC...  "
1737    cat > genmake_tcomp.$FS <<EOF
1738          program hello
1739          REAL*4 ACTUAL, TARRAY(2)
1740          EXTERNAL ETIME
1741          REAL*4 ETIME
1742          actual = etime( tarray )
1743          print *, tarray
1744          end
1745    EOF
1746    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1747    RETVAL=$?
1748    if test "x$RETVAL" = x0 ; then
1749        HAVE_ETIME=t
1750        DEFINES="$DEFINES -DHAVE_ETIME"
1751        echo "yes"
1752    else
1753        HAVE_ETIME=
1754        echo "no"
1755    fi
1756    rm -f genmake_tcomp*
1757    
1758    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1759    check_HAVE_CLOC
1760    if test "x$HAVE_CLOC" != x ; then
1761        DEFINES="$DEFINES -DHAVE_CLOC"
1762        echo "yes"
1763    else
1764        echo "no"
1765        if test "x$EMBED_SRC" = xt ; then
1766            echo "    WARNING: you requested file embedding but it has"
1767            echo "      been disabled since C code cannot be called"
1768            EMBED_SRC=
1769        fi
1770    fi
1771    rm -f genmake_t*
1772    
1773    printf "  Can we unlimit the stack size using $FC...  "
1774    check_HAVE_SETRLSTK
1775    if test "x$HAVE_SETRLSTK" = xt ; then
1776        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1777        echo "yes"
1778    else
1779        echo "no"
1780    fi
1781    rm -f genmake_t*
1782    
1783    printf "  Can we register a signal handler using $FC...  "
1784    check_HAVE_SIGREG
1785    if test "x$HAVE_SIGREG" = xt ; then
1786        DEFINES="$DEFINES -DHAVE_SIGREG"
1787        echo "yes"
1788    else
1789      echo "no"      echo "no"
1790  fi  fi
1791  rm -f genmake_tcomp*  rm -f genmake_t*
1792    
1793  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we use stat() through C calls...  "
1794  check_HAVE_CLOC  check_HAVE_STAT
1795  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_STAT" != x ; then
1796        DEFINES="$DEFINES -DHAVE_STAT"
1797      echo "yes"      echo "yes"
1798  else  else
1799      echo "no"      echo "no"
1800  fi  fi
1801  rm -f genmake_t*  rm -f genmake_t*
1802    
1803  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1804  check_netcdf_libs  check_netcdf_libs
1805  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1806        DEFINES="$DEFINES -DHAVE_NETCDF"
1807      echo "yes"      echo "yes"
1808  else  else
1809      echo "no"      echo "no"
1810  fi  fi
1811    DEFINES="$DEFINES $IGNORE_TIME"
1812    
1813    if test "x$EMBED_SRC" = xt ; then
1814        build_embed_encode
1815    fi
1816    if test "x$EMBED_SRC" = xt ; then
1817        ENABLE="$ENABLE embed_files"
1818    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1819    fi
1820    
1821  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1822  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1823  for d in $MODS ; do  for d in $MODS ; do
1824      if test ! -d $d ; then      if test ! -d $d ; then
1825          echo          echo
1826          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1827          exit 1          exit 1
1828      else      else
1829          echo -n " $d"          printf "$d "
1830          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1831          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1832      fi      fi
1833  done  done
1834  echo  echo
1835    
1836  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1837      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1838  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1839    
1840  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1841      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1842        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1843          EXEDIR=../exe          EXEDIR=../exe
1844      else      else
1845          EXEDIR=.          EXEDIR=.
# Line 1074  if test ! -d ${TOOLSDIR} ; then Line 1858  if test ! -d ${TOOLSDIR} ; then
1858      exit 1      exit 1
1859  fi  fi
1860  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1861      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1862        RETVAL=$?
1863        if test "x${RETVAL}" = x0 ; then
1864            S64='$(TOOLSDIR)/set64bitConst.sh'
1865        else
1866            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1867            RETVAL=$?
1868            if test "x${RETVAL}" = x0 ; then
1869                S64='$(TOOLSDIR)/set64bitConst.csh'
1870            else
1871                cat <<EOF
1872    
1873    ERROR: neither of the two default scripts:
1874    
1875        ${TOOLSDIR}/set64bitConst.sh
1876        ${TOOLSDIR}/set64bitConst.csh
1877    
1878      are working so please check paths or specify (with \$S64) a
1879      working version of this script.
1880    
1881    EOF
1882                exit 1
1883            fi
1884        fi
1885  fi  fi
1886  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1887    
1888  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1889    
1890    #  Set Standard Code Directories:
1891    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1892        STANDARDDIRS="eesupp model"
1893    fi
1894    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1895    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1896    ckM=$?
1897    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1898    ckE=$?
1899    if test $ckM = 0 -a $ckE = 1 ; then
1900        STANDARDDIRS="$STANDARDDIRS eesupp"
1901    fi
1902    
1903  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1904  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1905  #  they appear as regular source code  #  they appear as regular source code
1906  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1907      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1908      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1909        ) > make_eesupp.errors 2>&1
1910      RETVAL=$?      RETVAL=$?
1911      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1912          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1096  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1917  if test -r $ROOTDIR"/eesupp/src/Makefile
1917      fi      fi
1918  fi  fi
1919    
1920  #same for exch2  #same for pkg/exch2 and pkg/regrid
1921  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1922      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1923      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1924      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1925      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
1926          rm -f make_exch2.errors          RETVAL=$?
1927      else          if test "x${RETVAL}" = x0 ; then
1928          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
1929          cat make_exch2.errors 1>&2          else
1930          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1931                cat make_${pdir}.errors 1>&2
1932                exit 1
1933            fi
1934      fi      fi
1935  fi  done
1936    
1937  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1938  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1939      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1940      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1941          PDEPEND=$tmp  fi
1942      else  if  test "x${PKG_DEPEND}" = x ; then
1943          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1944          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1945  else  else
1946      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1947          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1948          exit 1          exit 1
1949      fi      fi
1950        echo "  getting package dependency info from  $PKG_DEPEND"
1951    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1952        get_pdepend_list $PKG_DEPEND
1953  fi  fi
1954  echo "  getting package dependency info from  $PDEPEND"  
1955  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1956  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1957  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1958      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1959      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1960  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1961  if test ! "x${RETVAL}" = x0 ; then  fi
1962      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1963      exit 1          echo "Warning:  No package groups information was specified."
1964            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1965    else
1966        if test ! -r ${PKG_GROUPS} ; then
1967            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1968            exit 1
1969        fi
1970        echo "  getting package groups info from      $PKG_GROUPS"
1971  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1972    
1973  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1974  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1975  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1976  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1977      for i in "." $MODS ; do      for i in "." $MODS ; do
1978          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1979                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1980                  break                  break
1981          fi          fi
1982      done      done
1983  fi  fi
1984  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1985      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1986  fi      if test "x${PKG_GROUPS}" = x ; then
1987  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1988      echo "    default packages file disabled"          exit 1
1989        fi
1990  else  else
1991      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1992          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1993            exit 1
1994      else      else
1995          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1996          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1997          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1998          RETVAL=$?          RETVAL=$?
1999          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2000              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2001              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2002              exit 1              exit 1
2003          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2004      fi      fi
2005  fi  fi
2006    for i in $pkg_list ; do
2007        PACKAGES="$PACKAGES $i"
2008    done
2009    echo     "    before group expansion packages are:$PACKAGES"
2010    if test "x${PKG_GROUPS}" != x ; then
2011        RET=1
2012        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2013        echo "    after group expansion packages are: $PACKAGES"
2014    fi
2015    
2016  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2017    echo "" > ./.tmp_pack
2018    for i in $PACKAGES ; do
2019        echo $i >> ./.tmp_pack
2020    done
2021    for i in `grep  "-" ./.tmp_pack` ; do
2022        j=`echo $i | sed 's/[-]//'`
2023        DISABLE="$DISABLE $j"
2024    done
2025  pack=  pack=
2026  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2027      addit="t"      addit="t"
# Line 1195  PACKAGES="$pack" Line 2038  PACKAGES="$pack"
2038  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2039  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2040  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2041    # Test if each explicitly referenced package exists
2042  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2043      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2044          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2045          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2046            exit 1
2047      fi      fi
2048      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2049  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2050  PACKAGES=  PACKAGES=
2051  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2052      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2053  done  done
2054  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2055    echo "    packages are: $PACKAGES"
2056    
2057    #  Check for package MNC: if NetCDF is available, then build the MNC
2058    #  template files ; otherwise, delete mnc from the list of packages.
2059    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2060    mnc_in=$?
2061    if test "x$HAVE_NETCDF" != xt ; then
2062        if test "x$mnc_in" = x0 ; then
2063            cat <<EOF
2064    *********************************************************************
2065    WARNING: the "mnc" package was enabled but tests failed to compile
2066      NetCDF applications.  Please check that:
2067    
2068      1) NetCDF is correctly installed for this compiler and
2069      2) the LIBS variable (within the "optfile") specifies the correct
2070           NetCDF library to link against.
2071    
2072      Due to this failure, the "mnc" package is now DISABLED.
2073    *********************************************************************
2074    EOF
2075            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2076            DISABLE="$DISABLE mnc"
2077        else
2078        #  this prevent to add mnc (due to pdepend rules) if not available
2079            DISABLE="$DISABLE mnc"
2080        fi
2081    else
2082        # we have NetCDF, we try to build MNC template files
2083        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2084        RETVAL=$?
2085        if test "x${RETVAL}" = x0 ; then
2086            rm -f make_mnc.errors
2087        else
2088            echo "Error: problem encountered while building source files in pkg/mnc:"
2089            cat make_mnc.errors 1>&2
2090            if test "x$mnc_in" = x0 ; then
2091                exit 1
2092            else
2093                DISABLE="$DISABLE mnc"
2094            fi
2095        fi
2096    fi
2097    
2098    #  Check for package PROFILES: if NetCDF is not available,
2099    #  then delete profiles from the list of available packages.
2100    if test "x$HAVE_NETCDF" != xt ; then
2101        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2102        RETVAL=$?
2103        if test "x$RETVAL" = x0 ; then
2104            cat <<EOF
2105    *********************************************************************
2106    WARNING: the "profiles" package was enabled but tests failed to
2107      compile NetCDF applications.  Please check that:
2108    
2109      1) NetCDF is correctly installed for this compiler and
2110      2) the LIBS variable (within the "optfile") specifies the correct
2111           NetCDF library to link against.
2112    
2113      Due to this failure, the "profiles" package is now DISABLED.
2114    *********************************************************************
2115    EOF
2116            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2117            DISABLE="$DISABLE profiles"
2118        else
2119        #  this prevent to add profiles (due to pdepend rules) if not available
2120            DISABLE="$DISABLE profiles"
2121        fi
2122    fi
2123    
2124  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2125  ck=    echo "  applying package dependency rules"
2126  while test "x$ck" != xtt ; do    ck=
2127      while test "x$ck" != xtt ; do
2128      i=0      i=0
2129      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2130      rtot=$nname      rtot=$nname
2131      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2132    
2133          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2134          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1228  while test "x$ck" != xtt ; do Line 2140  while test "x$ck" != xtt ; do
2140                  pin="t"                  pin="t"
2141              fi              fi
2142          done          done
2143            #  or in the current $STANDARDDIRS list?
2144            for p in $STANDARDDIRS ; do
2145                if test "x$p" = "x$pname" ; then pin="t" ; fi
2146            done
2147    
2148          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2149          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1250  while test "x$ck" != xtt ; do Line 2166  while test "x$ck" != xtt ; do
2166    
2167          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2168          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2169                #echo "   " $pname ": need to add :" $dname
2170              in_dis="f"              in_dis="f"
2171              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2172                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1270  while test "x$ck" != xtt ; do Line 2187  while test "x$ck" != xtt ; do
2187          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2188          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2189              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2190              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2191              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2192              exit 1              exit 1
2193          fi          fi
2194          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2195            #i=$(( $i + 1 ))
2196      done      done
2197      ck=$ck"t"      ck=$ck"t"
2198  done    done
2199  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2200    fi
2201  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2202      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2203      if test -d $adr ; then      if test -d $adr ; then
# Line 1293  for i in $PACKAGES ; do Line 2212  for i in $PACKAGES ; do
2212      fi      fi
2213  done  done
2214    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2215  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2216  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2217  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2218  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2219  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2220  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2221  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1339  for n in $names ; do Line 2231  for n in $names ; do
2231              fi              fi
2232          done          done
2233          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2234              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2235              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2236          fi          fi
2237      fi      fi
2238  done  done
2239  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2240  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2241      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2242      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2243  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2244    
2245  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2246      case $i in      case $i in
2247          aim_v23)          aim_v23)
2248              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2249              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1361  for i in $PACKAGES ; do Line 2253  for i in $PACKAGES ; do
2253    
2254  done  done
2255    
2256  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2257  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2258  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2259      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2260          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1420  fi Line 2309  fi
2309    
2310  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2311  #  compiler.  #  compiler.
2312  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2313      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2314  fi  fi
2315  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2316    touch adSrcFiles.tmp
2317  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2318      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2319      for j in $list_files ; do      for j in $list_files ; do
2320          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2321      done      done
2322  done  done
2323    if test ! "x"$FS = "x.f" ; then
2324        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2325        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2326    fi
2327    
2328  echo  echo
2329  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2330  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2331  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2332      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2333          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2334      fi      fi
2335  done  done
2336    
2337    if test ! "x$DIVA" = x ; then
2338        echo "  Creating the pseudo-MPI include directory"
2339        INCLUDES="-I./mpi_headers $INCLUDES"
2340        rm -rf ./mpi_headers
2341        mkdir -p ./mpi_headers
2342    
2343        if test "x$MPIINCLUDEDIR" = x ; then
2344            if test "x$MPIHOME" = x ; then
2345                MPIHOME='/usr'
2346            fi
2347            MPIINCLUDEDIR='$MPIHOME/include'
2348        fi
2349    
2350        if test -r $MPIINCLUDEDIR/mpif.h ; then
2351            for i in $MPI_HEADER_FILES; do
2352                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2353            done
2354    
2355            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2356        else
2357            echo " We cannot create a copy of mpif.h!"
2358    #       exit -1
2359        fi
2360    fi
2361    
2362  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2363  rm -rf .links.tmp  rm -rf .links.tmp
2364  mkdir .links.tmp  mkdir .links.tmp
2365    touch .links.tmp/foo
2366    if test ! -r ".links.tmp/foo" ; then
2367        echo
2368        echo "ERROR : something is wrong with your directory permissions or"
2369        echo "   your user file-creation mask (\"umask\") since creating a"
2370        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2371        echo "   not working.  Please try setting your umask to something"
2372        echo "   sane such as:"
2373        echo
2374        echo "      umask 0002"
2375        echo
2376        echo "   and please verify that you have the proper permissions for"
2377        echo "   creating sub-directories and then reading files created"
2378        echo "   within them."
2379        echo
2380        exit 1
2381    fi
2382    rm -f .links.tmp/foo
2383    
2384    if test "x$OPENAD" != x ; then
2385        OAD_DONT_COMPILE="/dev/null"
2386        OAD_DONT_TRANSFORM="/dev/null"
2387        OAD_KEEP_ORIGINAL="/dev/null"
2388        OAD_CB2M_FILES="/dev/null"
2389        echo "  looking for dontCompile file:  "
2390        for i in "." $MODS ; do
2391            if test -r $i"/dontCompile" ; then
2392                OAD_DONT_COMPILE=$i"/dontCompile"
2393                echo "     found $OAD_DONT_COMPILE"
2394                break
2395            fi
2396        done
2397        echo "  looking for dontTransform file:  "
2398        for i in "." $MODS ; do
2399            if test -r $i"/dontTransform" ; then
2400                OAD_DONT_TRANSFORM=$i"/dontTransform"
2401                echo "     found $OAD_DONT_TRANSFORM"
2402                break
2403            fi
2404        done
2405        echo "  looking for keepOriginal file:  "
2406        for i in "." $MODS ; do
2407            if test -r $i"/keepOriginal" ; then
2408                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2409                echo "     found $OAD_KEEP_ORIGINAL"
2410                break
2411            fi
2412        done
2413        echo "  looking for cb2mFiles:  "
2414        for i in "." $MODS ; do
2415            if test -r $i"/cb2mFiles" ; then
2416                OAD_CB2M_FILES=$i"/cb2mFiles"
2417                echo "     found $OAD_CB2M_FILES"
2418                break
2419            fi
2420        done
2421        echo "   OpenAD exceptions:  "
2422    fi
2423    
2424  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2425  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2426  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2427  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2428  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2429  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2430  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2431    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2432  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2433  for d in $alldirs ; do  for d in $alldirs ; do
2434      deplist=      deplist=
2435      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2436      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2437        if test "x$OPENAD" != x ; then
2438            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2439        fi
2440      for sf in $sfiles ; do      for sf in $sfiles ; do
2441          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2442              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2443                    ignore_f=f
2444                  case $d/$sf in                  case $d/$sf in
2445                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2446                            ignore_f=t
2447                          ;;                          ;;
2448                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2449                            ignore_f=t
2450                          ;;                          ;;
2451                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2452                            ignore_f=t
2453                            ;;
2454                      ./BUILD_INFO.h)
2455                            ignore_f=t
2456                            ;;
2457                      ./EMBEDDED_FILES.h)
2458                            ignore_f=t
2459                          ;;                          ;;
2460                    *)                    *)
2461                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2462                          deplist="$deplist $sf"                          #  ignore all soft-links
2463                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2464                                ignore_f=t
2465                            else
2466                                touch .links.tmp/$sf
2467                                deplist="$deplist $sf"
2468                            fi
2469                          ;;                          ;;
2470                  esac                  esac
2471                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2472                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2473                      F)                      case $extn in
2474                          echo    " \\"  >> srclist.inc                        F)
2475                          echo -n " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2476                            printf " $sf" >> F77srclist.tmp
2477                            if test "x$OPENAD" != x ; then
2478                                basename=${sf%%.F}
2479                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2480                                if test -z "$isAD" ; then
2481                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2482                                    if test -z "$toBeIgnored" ; then
2483                                        echo    " \\"  >> nonADF77srclist.tmp
2484                                        printf " $sf" >> nonADF77srclist.tmp
2485                                    else
2486                                        echo "    not to be compiled   :  $sf"
2487                                    fi
2488                                else # file is initially listed as an AD file we want to exclude it
2489                                     # or we want to retain the untransformed version
2490                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2491                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2492                                    if test -n "$notToBeTransformed"; then
2493                                        echo "    not to be transformed:  $sf"
2494                                    fi
2495                                    if test -n "$untransformedVersionToBeKept" ; then
2496                                        echo "    original to be kept  :  $sf"
2497                                    fi
2498                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2499                                        echo    " \\"  >> nonADF77srclist.tmp
2500                                        printf " $sf" >> nonADF77srclist.tmp
2501                                    fi
2502                                fi
2503                            fi
2504                          ;;                          ;;
2505                      F90)                      F90)
2506                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2507                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2508                          ;;                          ;;
2509                      c)                      c)
2510                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2511                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2512                          ;;                          ;;
2513                      h)                      h)
2514                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2515                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2516                          ;;                          ;;
2517                      flow)                      flow)
2518                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2519                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2520                          ;;                          ;;
2521                  esac                     esac
2522                    fi
2523              fi              fi
2524          fi          fi
2525      done      done
2526      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2527          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2528            echo "" >> srclinks.tmp
2529          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2530          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2531          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2532    # This may happen when make thinks that a header file has to be "remade"
2533    # because a module it depends on has changed.  In this case we do nothing.
2534            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2535          fi
2536      fi      fi
2537  done  done
2538  rm -rf .links.tmp  rm -rf .links.tmp
2539  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2540  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2541  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2542  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2543  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2544    echo "" >> ad_flow_files.tmp
2545    
2546    CMDLINE=$0
2547    for xx in "$@" ; do nw=`echo $xx | wc -w`
2548        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2549                            else CMDLINE="$CMDLINE '$xx'" ; fi
2550    done
2551    
2552  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2553      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2554  fi  fi
2555  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2556  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1522  echo "#    $MACHINE" >> $MAKEFILE Line 2558  echo "#    $MACHINE" >> $MAKEFILE
2558  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2559  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2560  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2561  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2562  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2563  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2564    
2565  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2566  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1533  EXE_SVD=$EXECUTABLE"_svd" Line 2569  EXE_SVD=$EXECUTABLE"_svd"
2569  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2570  #  #
2571  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2572  #  #
2573  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2574  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2575  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1553  cat >>$MAKEFILE <<EOF Line 2589  cat >>$MAKEFILE <<EOF
2589  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2590    
2591  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2592  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2593  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2594  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2595  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1570  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2606  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2606  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2607    
2608  # These files are created by Makefile  # These files are created by Makefile
2609  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2610  EOF  EOF
2611    
2612  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2613        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2614    else
2615        echo "EMBEDDED_FILES = " >>$MAKEFILE
2616    fi
2617    
2618  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2619  # Unix ln (link)  # Unix ln (link)
2620  LN = ${LN}  LN = ${LN}
# Line 1589  KPP = ${KPP} Line 2628  KPP = ${KPP}
2628  FC = ${FC}  FC = ${FC}
2629  # Fortran compiler  # Fortran compiler
2630  F90C = ${F90C}  F90C = ${F90C}
2631    # C compiler
2632    CC = ${CC}
2633  # Link editor  # Link editor
2634  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2635    
# Line 1600  INCLUDES = ${INCLUDES} Line 2641  INCLUDES = ${INCLUDES}
2641  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2642  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2643  # Optim./debug for FC  # Optim./debug for FC
2644  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2645  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2646  # Optim./debug for FC  # Optim./debug for FC
2647  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2648  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2649    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2650  # Flags for CC  # Flags for CC
2651  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2652  # Files that should not be optimized  # Files that should not be optimized
2653  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2654  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2655  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2656  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2657  # Name of the Mekfile  # Name of the makefile
2658  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2659    
2660  EOF  EOF
2661    
2662  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2663  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2664  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2665  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2666  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2667  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2668    
2669  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2670    
2671  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2672    
2673  .SUFFIXES:  # add definitions for preprocessed sources
2674  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2675    # hence the $FS and $FS90 here.
2676    # for fixed format f90 files we use ff90 or FF90 resp
2677    # but these are not expected to be the original source files
2678    
2679    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2680    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2681    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2682    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2683    echo >> $MAKEFILE
2684    echo '.SUFFIXES:' >> $MAKEFILE
2685    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2686    
2687    cat >>$MAKEFILE <<EOF
2688    
2689  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2690  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2691          @echo Creating \$@ ...          @echo Creating \$@ ...
2692          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2693    
2694  depend:  depend:
2695          @make links          @make -f \$(MAKEFILE) links
2696          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2697          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2698            -rm -f makedepend.out
2699    
2700  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  lib: libmitgcmuv.a
2701    
2702  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2703            ar rcv libmitgcmuv.a \$(OBJFILES)
2704            ar d   libmitgcmuv.a main.o
2705    
2706    obj: \$(OBJFILES)
2707    
2708    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2709    
2710    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2711    
2712  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2713          @printf 'running ... '          @printf 'running ... '
2714          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2715    
2716    # remove most of the files that "make" generates
2717  clean:  clean:
2718          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2719            -rm -rf *.o
2720            -rm -rf *.$FS *.flowdir
2721            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2722    
2723    # remove most of the files that "make" and "make depend" generate
2724  Clean:  Clean:
2725          @make clean          @make -f \$(MAKEFILE) clean
2726          @make cleanlinks          @make -f \$(MAKEFILE) cleanlinks
2727          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2728          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2729            -rm -f genmake_warnings genmake_errors make.log
2730    
2731    # remove also the executable, files that "genmake2" generates (except Makefile)
2732    #         and output from a run (plus log files from testreport)
2733  CLEAN:  CLEAN:
2734          @make Clean          @make -f \$(MAKEFILE) Clean
2735            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2736            -rm -f $LOGFILE genmake_state genmake_*optfile
2737            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2738          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2739          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2740          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2741          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2742            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2743            -rm -rf mnc_test_*
2744    
 #eh3 Makefile: makefile  
2745  makefile:  makefile:
2746          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2747  cleanlinks:  cleanlinks:
2748          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2749    
2750  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2751  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2752          @echo Creating \$@ ...          @echo Creating \$@ ...
2753          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2754  AD_CONFIG.h:  AD_CONFIG.h:
2755          @echo Creating \$@ ...          @echo Creating \$@ ...
2756          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2757  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2758          @echo Creating \$@ ...          @echo Creating \$@ ...
2759          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2760    
2761  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2762  .F.f:          @echo Creating \$@ ...
2763    EOF
2764    
2765    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2766    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2767    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2768    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2769    
2770    if test "x$EMBED_SRC" = xt ; then
2771        cat >>$MAKEFILE <<EOF
2772    
2773    decode_files.o : EMBEDDED_FILES.h
2774    
2775    ##  \$(F77_PP_SRC_FILES)
2776    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2777            @echo Creating \$@ ...
2778            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2779            -rm -f all_fF.tar.gz
2780            -gzip all_fF.tar
2781    
2782    EMBEDDED_FILES.h : all_fF.tar.gz
2783            @echo Creating \$@ ...
2784            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2785    
2786    EOF
2787    fi
2788    
2789    cat >>$MAKEFILE <<EOF
2790    
2791    # The normal chain of rules is (  .F - .$FS - .o  )
2792    
2793    ## This nullifies any default implicit rules concerning these two file types:
2794    ## %.o : %.F
2795    
2796    .F.$FS:
2797          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2798  .f.o:  .$FS.o:
2799          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2800  .F90.f90:  .F.o:
2801            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2802    .F90.$FS90:
2803            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2804    .FF90.f$FS90:
2805          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2806  .f90.o:  .$FS90.o:
2807          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2808    .f$FS90.o:
2809            cp \$< \$(basename  \$<).f90
2810            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2811  .c.o:  .c.o:
2812          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2813    .flow.flowdir:
2814            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2815    
2816  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2817  .F.p:  .F.p:
2818          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2819  .p.f:  .p.$FS:
2820          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2821    
2822    EOF
2823    
2824  #=========================================  #=========================================
2825  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2826    #===  for TAMC/TAF  ======================
2827    
2828    if test "x$OPENAD" = x ; then
2829    
2830    cat >>$MAKEFILE <<EOF
2831    
2832  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2833  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1717  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2842  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2842  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2843  for i in $ad_vars ; do  for i in $ad_vars ; do
2844      name=$i      name=$i
2845      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2846      eval $t1      eval $t1
2847      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2848      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2849  done  done
2850    
2851  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2852  echo >> $MAKEFILE  echo >> $MAKEFILE
2853  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2854  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2855  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2856      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2857      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2858  done  done
2859  echo >> $MAKEFILE  echo >> $MAKEFILE
2860  rm -f ad_files  rm -f adSrcFiles.tmp
2861    
2862  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2863    
2864  # ... AD ...  # ... AD ...
2865  adall: ad_taf  adall: \$(EXE_AD)
2866  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2867  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2868    
2869  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2870          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2871          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2872          -rm -f ad_config.template          -rm -f ad_config.template
2873          @make \$(F77FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2874          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(FLOFILES)
2875          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2876    
2877  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2878          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2879          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2880            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2881    
2882  adtafonly:  adtafonly:
2883          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2884          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2885            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2886    
2887    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2888            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2889    
2890    ad_tamc_output.$FS: ad_input_code.$FS
2891            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2892            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2893    
2894  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2895          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2896    
2897  ad_tamc_output.f: ad_input_code.f  adonlyfwd:
2898          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
2899    
2900  ad_tamc: ad_tamc_output.o \$(OBJFILES)  adtrick:
2901          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2902    
2903    adobj: ad_taf_output.o \$(OBJFILES)
2904    
2905  # ... FTL ...  # ... FTL ...
2906  ftlall: ftl_taf  ftlall: ftl_taf
2907  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2908  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2909    
2910  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2911          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template
2912          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2913          -rm -f ftl_config.template          -rm -f ftl_config.template
2914          @make \$(F77FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
2915          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(AD_FLOW_FILES)
2916          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2917    
2918  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2919          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2920          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2921            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2922    
2923  ftltafonly:  ftltafonly:
2924          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2925          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2926            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2927    
2928  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2929          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2930    
2931  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2932          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2933          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2934    
2935  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2936          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2937    
2938  # ... SVD ...  # ... SVD ...
2939  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2940  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2941            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2942    svdall: svd_touch svd_taf
2943    
2944  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2945          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2946    
2947            @echo "--->>> Only COMPILE svd code! <<<---"
2948            @echo "--->>> Assumes you previously <<<---"
2949            @echo "--->>> did make svdtaf        <<<---"
2950    
2951    svd_touch:
2952            @echo "--->>> Only COMPILE svd code! <<<---"
2953            @echo "--->>> Assumes you previously <<<---"
2954            @echo "--->>> did make svdtaf        <<<---"
2955            touch ad_taf_output.$FS ftl_taf_output.$FS
2956            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2957            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2958            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template
2959            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2960            -rm -f ftl_config.template
2961    
2962  #=========================================  EOF
2963    
2964    fi
2965    
2966    #===  for OpenAD  ========================
2967    
2968    if test "x$OPENAD" != x ; then
2969    
2970    # ============ begin OpenAD specific section ==============
2971    
2972    cat >>$MAKEFILE <<EOF
2973    
2974    # all the source files linked from the various locations:
2975    ALL_LINKED_FILES= \
2976    \$(F77_SRC_FILES) \
2977    \$(C_SRC_FILES) \
2978    \$(H_SRC_FILES) \
2979    \$(F90_SRC_FILES) \
2980    \$(SPECIAL_FILES)
2981    
2982    ifndef OPENADROOT
2983      \$(error "Error:  environment variable OPENADROOT not defined!")
2984    endif
2985    
2986    ifndef XAIFSCHEMAROOT
2987      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2988    endif
2989    
2990    ifndef XAIFBOOSTERROOT
2991      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2992    endif
2993    
2994    EOF
2995    
2996    echo "  Add the source list for common block to module conversion "
2997    echo >> $MAKEFILE
2998    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2999    for i in `cat ${OAD_CB2M_FILES}` ; do
3000      echo    " \\" >> $MAKEFILE
3001      printf " $i" >> $MAKEFILE
3002    done
3003    echo >> $MAKEFILE
3004    
3005    echo "  Add the source list for AD code generation"
3006    echo >> $MAKEFILE
3007    printf "AD_FILES = " >> $MAKEFILE
3008    for i in `cat ${OAD_CB2M_FILES}` ; do
3009      echo    " \\" >> $MAKEFILE
3010      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3011    done
3012    AD_FILES=`cat adSrcFiles.tmp`
3013    for i in $AD_FILES ; do
3014      basename=${i%%.f}
3015      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3016      if test -z "$toBeIgnored" ; then
3017        echo    " \\" >> $MAKEFILE
3018        printf " $i" >> $MAKEFILE
3019      fi
3020    done
3021    echo >> $MAKEFILE
3022    rm -f adSrcFiles.tmp
3023    
3024    cat >>$MAKEFILE <<EOF
3025    
3026    adAll: \$(EXE_AD)
3027    .PHONY: adAll
3028    
3029    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3030    
3031    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3032    
3033    .PHONY: adDepend
3034    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3035            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3036            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3037            -rm -f makedepend.out
3038    
3039    OPENAD_SUPPORT_F90_SRC_FILES = \
3040    w2f__types.F90 \
3041    OAD_active.F90 \
3042    OAD_cp.F90 \
3043    OAD_rev.F90 \
3044    OAD_tape.F90
3045    
3046    OPENAD_SUPPORT_C_SRC_FILES = \
3047    iaddr.c \
3048    timeRatio.c
3049    
3050    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3051            cat \$^ > \$@
3052    
3053    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3054            cat \$^ > \$@
3055    
3056    f95_test.out: f95_test_mods.f90 f95_test.f90
3057            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3058            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3059    
3060    # the file included below is created by the
3061    # postProcessor and its inclusion sets the
3062    # variable POSTPROCESSEDFILES
3063    # used below. Because the file is made during
3064    # make it won't be read until the second (recursive)
3065    # invocation in the rule below
3066    -include postProcess.make
3067    
3068    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3069    
3070    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3071    
3072    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3073    ifeq (\$(MAKELEVEL),0)
3074            \$(MAKE) adAll
3075    else
3076            touch \$@
3077    endif
3078    
3079    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3080    ifeq (\$(MAKELEVEL),1)
3081            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3082    else
3083            touch \$@
3084    endif
3085    
3086    # makefile debug rule
3087    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3088    .PHONY: openad
3089    
3090    # create the module files
3091    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3092            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3093    
3094    # create the header files
3095    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3096            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3097    
3098    # change everybody else to use the new module files:
3099    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3100            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3101    
3102    # makefile debug rule
3103    small_f: \$(CB2M_F90_PP_SRC_FILES)
3104    .PHONY: small_f
3105    
3106    ad_output.txt: \$(EXE_AD)
3107            @printf 'linking data files ... '
3108            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3109            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3110            @printf 'running ... '
3111            @./\$(EXE_AD) > \$@
3112    
3113    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3114    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3115            cat \$^ > \$@
3116    
3117    # strip all comments and blanks to reduce
3118    # the file size in order to reduce perl's memory requirements
3119    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3120            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3121    
3122    # mfef90 preprocessing
3123    # expand statement functions
3124    # expose mfef90 specific substring handling
3125    # add the w2f__types module
3126    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3127            ./mfef90 -r8 -z -F -N132 \$<
3128            mv \$<.B \$(basename \$<).B
3129            ./whirl2f -openad \$(basename \$<).B
3130            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3131    
3132    # canonicalizer
3133    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3134            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3135    
3136    # F -> WHIRL
3137    # note that the canonicalized version cuts off at col 72
3138    # doing this also for string constants which is ok as long
3139    # as we are in fixed mode and cut of exactly there.
3140    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3141    # characters respectively.
3142    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3143            ./mfef90 -r8 -z -F \$<
3144            mv \$<.B \$@
3145    
3146    # WHIRL -> XAIF
3147    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3148            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3149    
3150    # XAIF -> XAIF'
3151    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3152            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3153    
3154    # XAIF' -> WHIRL'
3155    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3156            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3157    
3158    # WHIRL' -> F'
3159    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3160            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3161    
3162    # insert template directives
3163    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3164            ../OAD_support/insertTemplateDir.bash \$< \$@
3165    
3166    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3167    # postprocess F'
3168    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3169            # the target is a placeholder to signal execution of the rule
3170            touch \$@
3171            # this step also creates the file postProcess.make but we cannot
3172            # name it as the target or else make will try to remake it for
3173            # the include directive above for any rule, e.g. make clean
3174            ./postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3175    
3176    # setup some links
3177    %.xsd:
3178            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3179    
3180    mfef90:
3181            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3182    
3183    # link the support files:
3184    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3185            \$(LN) ../OAD_support/\$@ .
3186    
3187    whirl2xaif xaif2whirl:
3188            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3189    
3190    preProcess.py postProcess.py:
3191            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3192    
3193    whirl2f whirl2f_be:
3194            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3195    
3196    oadDriver:
3197            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3198    
3199    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3200    
3201    # ============ end OpenAD specific section ==============
3202    
3203  EOF  EOF
3204    
3205    fi
3206    
3207    #=========================================
3208    
3209  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3210      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3211  fi  fi
# Line 1823  for i in $KPPFILES ; do Line 3217  for i in $KPPFILES ; do
3217      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3218          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3219      fi      fi
3220      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3221  done  done
3222    
3223  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1833  for i in $NOOPTFILES ; do Line 3227  for i in $NOOPTFILES ; do
3227      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3228          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3229      fi      fi
3230      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3231      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3232  done  done
3233    
# Line 1847  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3241  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3241  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3242    
3243  # Create special header files  # Create special header files
3244  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3245  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3246      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3247  else  else
# Line 1861  else Line 3255  else
3255      fi      fi
3256  fi  fi
3257  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3258      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3259  fi  fi
3260    
   
3261  #  Write the "state" for future records  #  Write the "state" for future records
3262  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3263      echo -n "" > genmake_state      printf "" > genmake_state
3264      for i in $gm_state ; do      for i in $gm_state ; do
3265          t1="t2=\$$i"          t1="t2=\$$i"
3266          eval $t1          eval $t1
3267          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3268      done      done
3269  fi  fi

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