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revision 1.70 by edhill, Sat Feb 28 05:01:12 2004 UTC revision 1.167 by jmc, Mon Nov 26 21:39:58 2007 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 45  test_for_string_in_file() {
45      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 67  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 80  find_possible_configs()  { Line 299  find_possible_configs()  {
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 100  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      #  The "original" makedepend is part of the Imake system that is      look_for_makedepend
325      #  most often distributed with XFree86 or with an XFree86 source  
326      #  package.  As a result, many machines (eg. generic Linux) do not      #================================================================
327      #  have a system-default "makedepend" available.  For those      #  look for possible C compilers
328      #  systems, we have two fall-back options:      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329      #      p_CC=
330      #    1) a makedepend implementation shipped with the cyrus-imapd      for c in $tmp ; do
331      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/          rm -f ./genmake_hello.c  ./genmake_hello
332      #          cat >> genmake_hello.c << EOF
333      #    2) a known-buggy xmakedpend shell script  #include <stdio.h>
334      #  int main(int argc, char **argv) {
335      #  So the choices are, in order:    printf("Hello!\n");
336      #    return 0;
337      #    1) use the user-specified program  }
338      #    2) use a system-wide default  EOF
339      #    3) locally build and use the cyrus implementation          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340      #    4) fall back to the buggy local xmakedpend script          RETVAL=$?
341      #          if test "x${RETVAL}" = x0 ; then
342      if test "x${MAKEDEPEND}" = x ; then              p_CC="$p_CC $c"
343        which makedepend >& /dev/null          fi
344        RETVAL=$?      done
345        if test ! "x${RETVAL}" = x0 ; then      rm -f ./genmake_hello.c ./genmake_hello
346           echo "    a system-default makedepend was not found."      if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348           #  Try to build the cyrus impl  
349           rm -f ./genmake_cy_md  Error: No C compilers were found in your path.  Please specify one using:
350           (  
351               cd $ROOTDIR/tools/cyrus-imapd-makedepend  \      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352                   &&  ./configure > /dev/null 2>&1  \      2) the CC or MITGCM_CC environment variables.
353                   &&  make > /dev/null 2>&1  \  
354                   &&  ./makedepend ifparser.c > /dev/null 2>&1  \  EOF
355                   &&  echo "true"          exit 1
356           ) > ./genmake_cy_md      else
357           grep true ./genmake_cy_md > /dev/null 2>&1          echo "  The possible C compilers found in your path are:"
358           RETVAL=$?          echo "   "$p_CC
359           if test "x$RETVAL" = x0 ; then          if test "x$CC" = x ; then
360               MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'              CC=`echo $p_CC | $AWK '{print $1}'`
361           else              echo "  Setting C compiler to: "$CC
362               MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          fi
          fi  
          rm -f ./genmake_cy_md  
       fi  
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 170  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
399          if test "x$FC" = x ; then      fi
400              FC=`echo $p_FC | $AWK '{print $1}'`  
401              echo "  Setting FORTRAN compiler to: "$FC      #  Use the first of the compilers found in the current PATH
402          fi      #  that has a correctly-named optfile
403        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404            for i in $p_FC ; do
405                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406                if test -r $OPTFILE ; then
407                    echo "  Setting OPTFILE to: "$OPTFILE
408                    break
409                fi
410            done
411      fi      fi
412    
413      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 258  get_pdepend_list()  { Line 485  get_pdepend_list()  {
485      . ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
# Line 272  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 336  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607      -mpi | --mpi      -mpi | --mpi
608            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
609      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
610            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
611            set to PATH. i.e. Include files from $PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
612            from $PATH/lib and use binaries from $PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
623    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
# Line 368  EOF Line 639  EOF
639    
640  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
641  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
642    
643        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644        if test ! "x$FC_NAMEMANGLE" = x ; then
645            return 0
646        fi
647    
648      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649            
650      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 385  WARNING: Please contact <MITgcm-support@ Line 662  WARNING: Please contact <MITgcm-support@
662  EOF  EOF
663          return 1          return 1
664      fi      fi
665      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666      RETVAL=$?      RETVAL=$?
667      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
668          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 397  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 415  WARNING: Please contact <MITgcm-support@ Line 692  WARNING: Please contact <MITgcm-support@
692  EOF  EOF
693          return 1          return 1
694      fi      fi
695      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696      RETVAL=$?      RETVAL=$?
697      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
698          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 469  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
750      RET_C=$?      RET_C=$?
751      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
752        program hello        program hello
753        Real*8 wtime        REAL*8 wtime
754        external cloc        external cloc
755        call cloc(wtime)        call cloc(wtime)
756        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
757        end program hello        end
758  EOF  EOF
759      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
760        echo $COMM >> genmake_warnings
761        $COMM >> genmake_warnings 2>&1
762      RET_F=$?      RET_F=$?
763      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
764      RETVAL=$?      RETVAL=$?
765      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
766          HAVE_CLOC=t          HAVE_CLOC=t
# Line 491  EOF Line 770  EOF
770  }  }
771    
772    
773    check_HAVE_SIGREG()  {
774        if test ! "x$HAVE_SIGREG" = x ; then
775            return
776        fi
777        get_fortran_c_namemangling
778        cat <<EOF > genmake_tc_1.c
779    $FC_NAMEMANGLE
780    #include <stdlib.h>
781    #include <stdio.h>
782    #include <signal.h>
783    #include <errno.h>
784    #include <ucontext.h>
785    
786    int * ip;
787    
788    static void killhandler(
789        unsigned int sn, siginfo_t  si, struct ucontext *sc )
790    {
791        *ip = *ip + 1;
792        return;
793    }
794    
795    void FC_NAMEMANGLE(sigreg) (int * aip)
796    {
797        struct sigaction s;
798        ip = aip;
799        s.sa_flags = SA_SIGINFO;
800        s.sa_sigaction = (void *)killhandler;
801        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
802            printf("Sigaction returned error = %d\n", errno);
803            exit(0);
804        }
805        return;
806    }
807    EOF
808        make genmake_tc_1.o >> genmake_warnings 2>&1
809        RET_C=$?
810        cat <<EOF > genmake_tc_2.$FS
811          program hello
812          integer anint
813          common /iv/ anint
814          external sigreg
815          call sigreg(anint)
816          end
817    EOF
818        echo >> genmake_warnings
819        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
820        cat genmake_tc_2.$FS >> genmake_warnings
821        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
822        echo $COMM >> genmake_warnings
823        $COMM >> genmake_warnings 2>&1
824        RETVAL=$?
825        if test "x$RETVAL" = x0 ; then
826            HAVE_SIGREG=t
827            DEFINES="$DEFINES -DHAVE_SIGREG"
828        fi
829        rm -f genmake_tc*
830    }
831    
832    
833    check_HAVE_SETRLSTK()  {
834        if test "x$HAVE_SETRLSTK" = xt ; then
835            DEFINES="$DEFINES -DHAVE_SETRLSTK"
836            return
837        fi  
838        if test ! "x$HAVE_SETRLSTK" = x ; then
839            return
840        fi
841        get_fortran_c_namemangling
842        cat <<EOF > genmake_tc_1.c
843    $FC_NAMEMANGLE
844    #include <sys/time.h>
845    #include <sys/resource.h>
846    #include <unistd.h>
847    void FC_NAMEMANGLE(setrlstk) ()
848    {
849        struct rlimit rls;
850        rls.rlim_cur = RLIM_INFINITY;
851        rls.rlim_max = RLIM_INFINITY;
852        setrlimit(RLIMIT_STACK, &rls);
853        return;
854    }
855    EOF
856        make genmake_tc_1.o >> genmake_warnings 2>&1
857        RET_C=$?
858        cat <<EOF > genmake_tc_2.$FS
859          program hello
860          external setrlstk
861          call setrlstk()
862          end
863    EOF
864        echo >> genmake_warnings
865        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
866        cat genmake_tc_2.$FS >> genmake_warnings
867        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
868        echo $COMM >> genmake_warnings
869        $COMM >> genmake_warnings 2>&1
870        RETVAL=$?
871        if test "x$RETVAL" = x0 ; then
872            HAVE_SETRLSTK=t
873            DEFINES="$DEFINES -DHAVE_SETRLSTK"
874        fi
875        rm -f genmake_tc*
876    }
877    
878    
879    check_HAVE_STAT()  {
880        get_fortran_c_namemangling
881        cat <<EOF > genmake_tc_1.c
882    $FC_NAMEMANGLE
883    #include <stdio.h>
884    #include <stdlib.h>
885    #include <unistd.h>
886    #include <sys/stat.h>
887    #include <sys/types.h>
888    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
889    {
890        char name[512];
891        struct stat astat;
892    
893        name[0] = 'a'; name[1] = '\0';
894        if (! stat(name, &astat))
895            *nbyte = (int)(astat.st_size);
896        else
897            *nbyte = -1;
898    }
899    EOF
900        make genmake_tc_1.o >> genmake_tc.log 2>&1
901        RET_C=$?
902        cat <<EOF > genmake_tc_2.$FS
903          program hello
904          integer nbyte
905          call tfsize(nbyte)
906          print *," HELLO WORLD", nbyte
907          end
908    EOF
909        echo >> genmake_warnings
910        echo "running: check_HAVE_STAT()" >> genmake_warnings
911        cat genmake_tc_2.$FS >> genmake_warnings
912        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
913        echo $COMM >> genmake_warnings
914        $COMM >> genmake_tc.log 2>&1
915        RETVAL=$?
916        if test "x$RETVAL" = x0 ; then
917            HAVE_STAT=t
918            DEFINES="$DEFINES -DHAVE_STAT"
919        fi
920        rm -f genmake_tc*
921    }
922    
923    
924  check_netcdf_libs()  {  check_netcdf_libs()  {
925        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
926            return
927        fi
928        echo >> genmake_warnings
929        echo "running: check_netcdf_libs()" >> genmake_warnings
930      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
931        program fgennc        program fgennc
932  #include "netcdf.inc"  #include "netcdf.inc"
933    EOF
934        if test ! "x$MPI" = x ; then
935            echo '#include "mpif.h"' >> genmake_tnc.F
936        fi
937        cat <<EOF >> genmake_tnc.F
938        integer iret, ncid, xid        integer iret, ncid, xid
939        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
940        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 504  check_netcdf_libs()  { Line 944  check_netcdf_libs()  {
944        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
945        end        end
946  EOF  EOF
947      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
948          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
949        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
950        RET_CPP=f
951        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
952        echo "$COMM" >> genmake_tnc.log
953        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
954        if test "x$RET_CPP" = xf ; then
955            echo "  WARNING: CPP failed to pre-process the netcdf test." \
956                >> genmake_tnc.log
957            echo "    Please check that \$INCLUDES is properly set." \
958                >> genmake_tnc.log
959        fi
960        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
961        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
962        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
963            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
964      RET_COMPILE=$?      RET_COMPILE=$?
965      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
966      RETVAL=$?  
967      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
968        #EH3  execution or cannot support it (eg. cross-compilers)
969        #EH3
970        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
971        #EH3 RETVAL=$?
972        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
973    
974        if test "x$RET_COMPILE" = x0 ; then
975          HAVE_NETCDF=t          HAVE_NETCDF=t
976      else      else
977          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
978          $CPP genmake_tnc.F > genmake_tnc.f  \          echo "try again with added '-lnetcdf'" > genmake_tnc.log
979              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
980              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
981            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
982            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
983                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
985          RET_COMPILE=$?          RET_COMPILE=$?
986          test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1          cat genmake_tnc.log >> genmake_warnings
987          RETVAL=$?          if test "x$RET_COMPILE" = x0 ; then
         if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then  
988              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
989              HAVE_NETCDF=t              HAVE_NETCDF=t
990          else          else
991            # try again with "-lnetcdff" added to the libs
992                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
993                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
994                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
995                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
996                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
997                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
998                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
999                RET_COMPILE=$?
1000              cat genmake_tnc.log >> genmake_warnings              cat genmake_tnc.log >> genmake_warnings
1001                if test "x$RET_COMPILE" = x0 ; then
1002                    LIBS="$LIBS -lnetcdff -lnetcdf"
1003                    HAVE_NETCDF=t
1004                fi
1005          fi          fi
1006      fi      fi
1007      rm -f genmake_tnc*      rm -f genmake_tnc*
# Line 542  PLATFORM= Line 1020  PLATFORM=
1020  LN=  LN=
1021  S64=  S64=
1022  KPP=  KPP=
1023  FC=  #FC=
1024  CPP=  #CC=gcc
1025    #CPP=
1026  LINK=  LINK=
1027  DEFINES=  DEFINES=
1028  PACKAGES=  PACKAGES=
1029  ENABLE=  ENABLE=
1030  DISABLE=  DISABLE=
1031  MAKEFILE=  # MAKEFILE=
1032  MAKEDEPEND=  # MAKEDEPEND=
1033  PDEPEND=  PDEPEND=
1034  DUMPSTATE=t  DUMPSTATE=t
1035  PDEFAULT=  PDEFAULT=
1036  OPTFILE=  OPTFILE=
1037  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1038  FFLAGS=  FFLAGS=
1039  FOPTIM=  FOPTIM=
1040    FEXTRAFLAGS=
1041  CFLAGS=  CFLAGS=
1042  KFLAGS1=  KFLAGS1=
1043  KFLAGS2=  KFLAGS2=
# Line 568  NOOPTFILES= Line 1048  NOOPTFILES=
1048  NOOPTFLAGS=  NOOPTFLAGS=
1049  MPI=  MPI=
1050  MPIPATH=  MPIPATH=
1051    TS=
1052    PAPIS=
1053    PCLS=
1054    FOOLAD=
1055    PAPI=
1056    PCL=
1057    HPMT=
1058    GSL=
1059    DEVEL=
1060    HAVE_TEST_L=
1061    
1062  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1063  HAVE_SYSTEM=  HAVE_SYSTEM=
1064  HAVE_FDATE=  HAVE_FDATE=
1065  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1066  HAVE_CLOC=  HAVE_CLOC=
1067    # HAVE_SETRLSTK=
1068    HAVE_STAT=
1069  HAVE_NETCDF=  HAVE_NETCDF=
1070    HAVE_ETIME=
1071    IGNORE_TIME=
1072    
1073  MODS=  MODS=
1074  TOOLSDIR=  TOOLSDIR=
# Line 582  SOURCEDIRS= Line 1076  SOURCEDIRS=
1076  INCLUDEDIRS=  INCLUDEDIRS=
1077  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1078    
1079    G2ARGS=
1080    BASH=
1081  PWD=`pwd`  PWD=`pwd`
1082  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1083  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1084  THISHOSTNAME=`hostname`  EMBED_SRC=
1085    THISHOST=`hostname`
1086  THISCWD=`pwd`  THISCWD=`pwd`
1087  THISDATE=`date`  THISDATE=`date`
1088    THISUSER=`echo $USER`
1089    THISVER=
1090  MACHINE=`uname -a`  MACHINE=`uname -a`
1091  EXECUTABLE=  EXECUTABLE=
1092  EXEHOOK=  EXEHOOK=
# Line 597  IEEE= Line 1096  IEEE=
1096  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1097      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1098  fi  fi
1099    FS=
1100    FS90=
1101    
1102  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1103  AD_OPTFILE=  AD_OPTFILE=
# Line 614  TAMC_EXTRA= Line 1115  TAMC_EXTRA=
1115    
1116  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1117  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1118  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1119    
1120  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1121  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1122  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1123  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1124  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1125  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1126    
1127  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1128  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 644  EOF Line 1145  EOF
1145    
1146  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1147  gm_local="genmake_local"  gm_local="genmake_local"
1148  for i in . $MODS ; do  printf "  getting local config information:  "
1149      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1150      echo "using $gm_local"      echo "using $gm_local"
1151      . $gm_local      . $gm_local
1152      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 660  else Line 1155  else
1155      echo "none found"      echo "none found"
1156  fi  fi
1157    
1158  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1159  #OPTIONS=  #OPTIONS=
1160  #n=0  #n=0
1161  #for i ; do  #for i ; do
# Line 672  fi Line 1167  fi
1167  #done  #done
1168  #parse_options  #parse_options
1169  ac_prev=  ac_prev=
1170  for ac_option ; do  for ac_option in "$@" ; do
1171    
1172        G2ARGS="$G2ARGS \"$ac_option\""
1173    
1174      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1175      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 715  for ac_option ; do Line 1212  for ac_option ; do
1212          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1213              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1214                    
1215            -bash | --bash)
1216                ac_prev=BASH ;;
1217            -bash=* | --bash=*)
1218                BASH=$ac_optarg ;;
1219            
1220          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1221              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1222          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
# Line 761  for ac_option ; do Line 1263  for ac_option ; do
1263  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1264  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1265  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1266                        
1267            -cc | --cc)
1268                ac_prev=CC ;;
1269            -cc=* | --cc=*)
1270                CC=$ac_optarg ;;
1271            
1272          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1273              ac_prev=FC ;;              ac_prev=FC ;;
1274          -fc=* | --fc=*)          -fc=* | --fc=*)
1275              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1276                    
1277            -fs | --fs)
1278                ac_prev=FS ;;
1279            -fs=* | --fs=*)
1280                FS=$ac_optarg ;;
1281            
1282            -fs90 | --fs90)
1283                ac_prev=FS90 ;;
1284            -fs90=* | --fs90=*)
1285                FS90=$ac_optarg ;;
1286            
1287          -ieee | --ieee)          -ieee | --ieee)
1288              IEEE=true ;;              IEEE=true ;;
1289          -noieee | --noieee)          -noieee | --noieee)
1290              IEEE= ;;              IEEE= ;;
1291    
1292            -ts | --ts)
1293                TS=true ;;
1294            -papis | --papis)
1295                PAPIS=true ;;
1296            -pcls | --pcls)
1297                PCLS=true ;;
1298            -foolad | --foolad)
1299                FOOLAD=true ;;
1300            -papi | --papi)
1301                PAPI=true ;;
1302            -pcl | --pcl)
1303                PCL=true ;;
1304            -hpmt | --hpmt)
1305                HPMT=true ;;
1306    
1307            -gsl | --gsl)
1308                GSL=true ;;
1309    
1310            -devel | --devel)
1311                DEVEL=true ;;
1312    
1313          -mpi | --mpi)          -mpi | --mpi)
1314              MPI=true ;;              MPI=true ;;
1315          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
# Line 795  for ac_option ; do Line 1333  for ac_option ; do
1333              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1334          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1335              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1336            
1337            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1338                IGNORE_TIME="-DIGNORE_TIME" ;;
1339    
1340            -es | --es | -embed-source | --embed-source)
1341                EMBED_SRC=t ;;
1342    
1343          -*)          -*)
1344              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 810  for ac_option ; do Line 1354  for ac_option ; do
1354            
1355  done  done
1356    
1357    
1358  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1359      echo      echo
1360      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1361      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1362      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1363      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1364      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1365      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1366      echo      echo
1367  fi  fi
1368    
1369    #  Find the MITgcm ${ROOTDIR}
1370  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1371      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1372        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1373          ROOTDIR=".."          ROOTDIR=".."
1374      else      else
1375          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1376              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1377                  ROOTDIR=$d                  ROOTDIR=$d
1378                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1379                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1380                  break                  break
1381              fi              fi
# Line 847  if test ! -d ${ROOTDIR} ; then Line 1393  if test ! -d ${ROOTDIR} ; then
1393      exit 1      exit 1
1394  fi  fi
1395    
1396    #  Find the MITgcm ${THISVER}
1397    if test -f "${ROOTDIR}/doc/tag-index" ; then
1398        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1399    fi
1400    
1401    if test "x$MAKEFILE" = x ; then
1402        MAKEFILE="Makefile"
1403    fi
1404    
1405  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1406  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1407      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 863  if test "x$OPTFILE" != xNONE ; then Line 1418  if test "x$OPTFILE" != xNONE ; then
1418          . "$OPTFILE"          . "$OPTFILE"
1419          RETVAL=$?          RETVAL=$?
1420          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1421              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1422              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1423              exit 1              exit 1
1424          fi          fi
# Line 890  if test "x${AD_OPTFILE}" != xNONE ; then Line 1445  if test "x${AD_OPTFILE}" != xNONE ; then
1445          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1446          RETVAL=$?          RETVAL=$?
1447          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1448              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1449              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1450              exit 1              exit 1
1451          fi          fi
# Line 903  if test "x${AD_OPTFILE}" != xNONE ; then Line 1458  if test "x${AD_OPTFILE}" != xNONE ; then
1458      fi      fi
1459  fi  fi
1460    
1461  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1462    #  Set default values if not set by the optfile
1463    #
1464    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1465  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1466    if test ! "x$BASH" = x ; then
1467        # add a trailing space so that it works within the Makefile syntax (see below)
1468        BASH="$BASH "
1469    fi
1470  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1471      cat <<EOF 1>&2      cat <<EOF 1>&2
1472    
# Line 915  Error: no Fortran compiler: please speci Line 1477  Error: no Fortran compiler: please speci
1477  EOF  EOF
1478      exit 1      exit 1
1479  fi  fi
1480    if test "x$CC" = x ; then
1481        CC=cc
1482    #     cat <<EOF 1>&2
1483    # Error: no C compiler: please specify using one of the following:
1484    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1485    #   2) the "-cc=XXX" command-line option
1486    #   3) the "./genmake_local" file
1487    # EOF
1488    #     exit 1
1489    fi
1490  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1491      LINK=$FC      LINK=$FC
1492  fi  fi
# Line 925  if test "x$CPP" = x ; then Line 1497  if test "x$CPP" = x ; then
1497      CPP=cpp      CPP=cpp
1498  fi  fi
1499  #EH3 === UGLY ===  #EH3 === UGLY ===
1500  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1501  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1502  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1503  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1504  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 949  EOF Line 1521  EOF
1521  else  else
1522      rm -f test_cpp      rm -f test_cpp
1523  fi  fi
1524  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1525  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1526      LN="ln -s"      LN="ln -s"
1527  fi  fi
# Line 967  Error: The command "ln -s" failed -- ple Line 1537  Error: The command "ln -s" failed -- ple
1537  EOF  EOF
1538      exit 1      exit 1
1539  fi  fi
1540    test -L genmake_tlink > /dev/null 2>&1
1541    RETVAL=$?
1542    if test "x$RETVAL" = x0 ; then
1543        HAVE_TEST_L=t
1544    fi
1545  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1546    
1547    #  Check for broken *.F/*.f handling and fix if possible
1548    check_for_broken_Ff
1549    
1550  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1551        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1552        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1553  fi  fi
1554    
1555    if test ! "x$TS" = x ; then
1556          echo "  Turning on timing per timestep"
1557          if test ! "x$FOOLAD" = x ; then
1558                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1559          else
1560                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1561          fi
1562          PACKAGES="$PACKAGES showflops"
1563    fi
1564    if test ! "x$PAPIS" = x ; then
1565          echo "  Turning on PAPI flop summary per timestep"
1566          echo "  Please make sure PAPIINC, PAPILIB are defined"
1567          if test ! "x$FOOLAD" = x ; then
1568                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1569          else
1570                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1571          fi
1572          INCLUDES="$INCLUDES $PAPIINC"
1573          LIBS="$LIBS $PAPILIB"
1574          PACKAGES="$PACKAGES showflops"
1575    fi
1576    if test ! "x$PCLS" = x ; then
1577          echo "  Turning on PCL counter summary per timestep"
1578          echo "  Please make sure PCLINC, PCLLIB are defined"
1579          if test ! "x$FOOLAD" = x ; then
1580                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1581          else
1582                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1583          fi
1584          INCLUDES="$INCLUDES $PCLINC"
1585          LIBS="$LIBS $PCLLIB"
1586          PACKAGES="$PACKAGES showflops"
1587    fi
1588    if test ! "x$PAPI" = x ; then
1589          if test ! "x$PAPIS" = x ; then
1590              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1591              echo "  Sticking with PAPI flop summary per timestep!"
1592          else
1593              echo "  Turning on performance analysis with PAPI"
1594              echo "  Please make sure PAPIINC, PAPILIB are defined"
1595              DEFINES="$DEFINES -DUSE_PAPI"
1596              INCLUDES="$INCLUDES $PAPIINC"
1597              LIBS="$LIBS $PAPILIB"
1598          fi
1599    fi
1600    if test ! "x$PCL" = x ; then
1601          if test ! "x$PCLS" = x ; then
1602              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1603              echo "  Sticking with PCL flop summary per timestep!"
1604          else
1605              echo "  Turning on performance analysis with PCL"
1606              echo "  Please make sure PCLINC, PCLLIB are defined"
1607              DEFINES="$DEFINES -DUSE_PCL"
1608              INCLUDES="$INCLUDES $PCLINC"
1609              LIBS="$LIBS $PCLLIB"
1610          fi
1611    fi
1612    if test ! "x$HPMT" = x ; then
1613          if test ! "x$PAPI" = x ; then
1614              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1615              echo "  Sticking with PAPI!"
1616          else if test ! "x$PCL" = x ; then
1617              echo "  PCL and the HPM Toolkit cannot co-exist!"
1618              echo "  Sticking with PCL!"
1619          else
1620              echo "  Turning on performance analysis with the HPM Toolkit"
1621              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1622              DEFINES="$DEFINES -DUSE_LIBHPM"
1623              INCLUDES="$INCLUDES $HPMTINC"
1624              LIBS="$LIBS $HPMTLIB"
1625          fi
1626          fi
1627    fi
1628    if test ! "x$GSL" = x ; then
1629          echo "  Turning on use of GSL to control floating point calculations"
1630          echo "  Please make sure GSLINC, GSLLIB are defined"
1631          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1632          INCLUDES="$INCLUDES $GSLINC"
1633          LIBS="$LIBS $GSLLIB"
1634    fi
1635    
1636  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1637  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1638  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1639        program hello        program hello
1640        call system('echo hi')        call system('echo hi')
1641        end        end
1642  EOF  EOF
1643  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1644  RETVAL=$?  RETVAL=$?
1645  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1646      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 993  else Line 1652  else
1652  fi  fi
1653  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1654    
1655  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1656  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1657        program hello        program hello
1658        CHARACTER(128) string        CHARACTER*(128) string
1659        string = ' '        string = ' '
1660        call fdate( string )        call fdate( string )
1661        print *, string        print *, string
1662        end        end
1663  EOF  EOF
1664  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1665  RETVAL=$?  RETVAL=$?
1666  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1667      HAVE_FDATE=t      HAVE_FDATE=t
# Line 1014  else Line 1673  else
1673  fi  fi
1674  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1675    
1676  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1677    cat > genmake_tcomp.$FS <<EOF
1678          program hello
1679          REAL*4 ACTUAL, TARRAY(2)
1680          EXTERNAL ETIME
1681          REAL*4 ETIME
1682          actual = etime( tarray )
1683          print *, tarray
1684          end
1685    EOF
1686    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1687    RETVAL=$?
1688    if test "x$RETVAL" = x0 ; then
1689        HAVE_ETIME=t
1690        DEFINES="$DEFINES -DHAVE_ETIME"
1691        echo "yes"
1692    else
1693        HAVE_ETIME=
1694        echo "no"
1695    fi
1696    rm -f genmake_tcomp*
1697    
1698    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1699  check_HAVE_CLOC  check_HAVE_CLOC
1700  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1701      echo "yes"      echo "yes"
1702  else  else
1703      echo "no"      echo "no"
1704        if test "x$EMBED_SRC" = xt ; then
1705            echo "    WARNING: you requested file embedding but it has"
1706            echo "      been disabled since C code cannot be called"
1707            EMBED_SRC=
1708        fi
1709    fi
1710    rm -f genmake_t*
1711    
1712    printf "  Can we unlimit the stack size using $FC...  "
1713    check_HAVE_SETRLSTK
1714    if test "x$HAVE_SETRLSTK" = xt ; then
1715        echo "yes"
1716    else
1717        echo "no"
1718    fi
1719    rm -f genmake_t*
1720    
1721    printf "  Can we register a signal handler using $FC...  "
1722    check_HAVE_SIGREG
1723    if test "x$HAVE_SIGREG" = xt ; then
1724        echo "yes"
1725    else
1726        echo "no"
1727    fi
1728    rm -f genmake_t*
1729    
1730    printf "  Can we use stat() through C calls...  "
1731    check_HAVE_STAT
1732    if test "x$HAVE_STAT" != x ; then
1733        echo "yes"
1734    else
1735        echo "no"
1736  fi  fi
1737  rm -f genmake_t*  rm -f genmake_t*
1738    
1739  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1740  check_netcdf_libs  check_netcdf_libs
1741  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1742      echo "yes"      echo "yes"
1743  else  else
1744      echo "no"      echo "no"
1745  fi  fi
1746    DEFINES="$DEFINES $IGNORE_TIME"
1747    
1748    if test "x$EMBED_SRC" = xt ; then
1749        build_embed_encode
1750    fi
1751    if test "x$EMBED_SRC" = xt ; then
1752        ENABLE="$ENABLE embed_files"
1753    fi
1754    
1755    
1756  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1757  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1758  for d in $MODS ; do  for d in $MODS ; do
1759      if test ! -d $d ; then      if test ! -d $d ; then
1760          echo          echo
1761          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1762          exit 1          exit 1
1763      else      else
1764          echo -n " $d"          printf " $d"
1765          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1766          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1767      fi      fi
1768  done  done
1769  echo  echo
1770    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1771  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1772      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1773  fi  fi
1774    
1775  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1776      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1777        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1778          EXEDIR=../exe          EXEDIR=../exe
1779      else      else
1780          EXEDIR=.          EXEDIR=.
# Line 1074  if test ! -d ${TOOLSDIR} ; then Line 1793  if test ! -d ${TOOLSDIR} ; then
1793      exit 1      exit 1
1794  fi  fi
1795  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1796      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1797        RETVAL=$?
1798        if test "x${RETVAL}" = x0 ; then
1799            S64='$(TOOLSDIR)/set64bitConst.sh'
1800        else
1801            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1802            RETVAL=$?
1803            if test "x${RETVAL}" = x0 ; then
1804                S64='$(TOOLSDIR)/set64bitConst.csh'
1805            else
1806                cat <<EOF
1807    
1808    ERROR: neither of the two default scripts:
1809    
1810        ${TOOLSDIR}/set64bitConst.sh
1811        ${TOOLSDIR}/set64bitConst.csh
1812    
1813      are working so please check paths or specify (with \$S64) a
1814      working version of this script.
1815    
1816    EOF
1817                exit 1
1818            fi
1819        fi
1820  fi  fi
1821  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1822    
# Line 1096  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1838  if test -r $ROOTDIR"/eesupp/src/Makefile
1838      fi      fi
1839  fi  fi
1840    
1841  #same for exch2  #same for pkg/exch2 and pkg/regrid
1842  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1843      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1844      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1845      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1846      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1847          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1848      else              rm -f make_${pdir}.errors
1849          echo "Error: problem encountered while building source files in exch2:"          else
1850          cat make_exch2.errors 1>&2              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1851          exit 1              cat make_${pdir}.errors 1>&2
1852                exit 1
1853            fi
1854      fi      fi
1855  fi  done
1856    
1857  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1858  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1165  else Line 1909  else
1909          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1910          RETVAL=$?          RETVAL=$?
1911          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1912              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1913              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1914              exit 1              exit 1
1915          fi          fi
# Line 1173  else Line 1917  else
1917              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1918          done          done
1919          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1920          expand_pkg_groups          RET=1
1921            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1922          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1923      fi      fi
1924  fi  fi
1925    
1926  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1927    for i in $PACKAGES ; do
1928        echo $i >> ./.tmp_pack
1929    done
1930    for i in `grep  "-" ./.tmp_pack` ; do
1931        j=`echo $i | sed 's/[-]//'`
1932        DISABLE="$DISABLE $j"
1933    done
1934  pack=  pack=
1935  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1936      addit="t"      addit="t"
# Line 1195  PACKAGES="$pack" Line 1947  PACKAGES="$pack"
1947  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1948  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1949  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1950    # Test if each explicitly referenced package exists
1951  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1952      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1953        if test ! -d "$ROOTDIR/pkg/$j" ; then
1954          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1955          exit 1          exit 1
1956      fi      fi
1957      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1958  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1959  PACKAGES=  PACKAGES=
1960  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1961      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1962  done  done
1963    rm -f ./.tmp_pack
1964  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1965    
1966    #  Check for package MNC: if NetCDF is available, then build the MNC
1967    #  template files ; otherwise, delete mnc from the list of packages.
1968    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1969    RETVAL=$?
1970    if test "x$RETVAL" = x0 ; then
1971        if test "x$HAVE_NETCDF" != xt ; then
1972            cat <<EOF
1973    
1974    *********************************************************************
1975    WARNING: the "mnc" package was enabled but tests failed to compile
1976      NetCDF applications.  Please check that:
1977    
1978      1) NetCDF is correctly installed for this compiler and
1979      2) the LIBS variable (within the "optfile") specifies the correct
1980           NetCDF library to link against.
1981    
1982      Due to this failure, the "mnc" package is now DISABLED.
1983    *********************************************************************
1984    
1985    EOF
1986            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1987            DISABLE="$DISABLE mnc"
1988        else
1989            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1990            RETVAL=$?
1991            if test "x${RETVAL}" = x0 ; then
1992                rm -f make_mnc.errors
1993            else
1994                echo "Error: problem encountered while building source files in pkg/mnc:"
1995                cat make_mnc.errors 1>&2
1996                exit 1
1997            fi
1998        fi
1999    fi
2000    
2001    #  Check for package PROFILES: if NetCDF is not available,
2002    #  then delete profiles from the list of available packages.
2003    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2004    RETVAL=$?
2005    if test "x$RETVAL" = x0 ; then
2006        if test "x$HAVE_NETCDF" != xt ; then
2007            cat <<EOF
2008    
2009    *********************************************************************
2010    WARNING: the "profiles" package was enabled but tests failed to
2011      compile NetCDF applications.  Please check that:
2012    
2013      1) NetCDF is correctly installed for this compiler and
2014      2) the LIBS variable (within the "optfile") specifies the correct
2015           NetCDF library to link against.
2016    
2017      Due to this failure, the "profiles" package is now DISABLED.
2018    *********************************************************************
2019    
2020    EOF
2021            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2022            DISABLE="$DISABLE profiles"
2023        fi
2024    fi
2025    
2026  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2027  ck=  ck=
2028  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2029      i=0      i=0
2030      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2031      rtot=$nname      rtot=$nname
2032      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2033    
2034          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2035          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1250  while test "x$ck" != xtt ; do Line 2063  while test "x$ck" != xtt ; do
2063    
2064          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2065          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2066                #echo "   " $pname ": need to add :" $dname
2067              in_dis="f"              in_dis="f"
2068              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2069                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1274  while test "x$ck" != xtt ; do Line 2088  while test "x$ck" != xtt ; do
2088              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2089              exit 1              exit 1
2090          fi          fi
2091          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2092            #i=$(( $i + 1 ))
2093      done      done
2094      ck=$ck"t"      ck=$ck"t"
2095  done  done
# Line 1293  for i in $PACKAGES ; do Line 2108  for i in $PACKAGES ; do
2108      fi      fi
2109  done  done
2110    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2111  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2112  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2113  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1339  for n in $names ; do Line 2127  for n in $names ; do
2127              fi              fi
2128          done          done
2129          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2130              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2131              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2132          fi          fi
2133      fi      fi
2134  done  done
2135  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2136  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2137      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2138      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2139  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2140    
# Line 1430  for i in $SOURCEDIRS ; do Line 2218  for i in $SOURCEDIRS ; do
2218          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2219      done      done
2220  done  done
2221    if test ! "x"$FS = "x.f" ; then
2222        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2223        mv -f ad_files_f ad_files
2224    fi
2225    
2226  echo  echo
2227  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2228  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2229  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2230      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2231          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2232      fi      fi
2233  done  done
2234    
2235    if test ! "x$DIVA" = x ; then
2236        echo "  Creating the pseudo-MPI include directory"
2237        INCLUDES="-I./mpi_headers $INCLUDES"
2238        rm -rf ./mpi_headers
2239        mkdir -p ./mpi_headers
2240    
2241        if test "x$MPIINCLUDEDIR" = x ; then
2242            if test "x$MPIHOME" = x ; then
2243                MPIHOME='/usr'
2244            fi
2245            MPIINCLUDEDIR='$MPIHOME/include'
2246        fi
2247        
2248        if test -r $MPIINCLUDEDIR/mpif.h ; then
2249            for i in $MPI_HEADER_FILES; do
2250                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2251            done
2252    
2253            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2254        else
2255            echo " We cannot create a copy of mpif.h!"
2256    #       exit -1
2257        fi
2258    fi
2259    
2260  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2261  rm -rf .links.tmp  rm -rf .links.tmp
2262  mkdir .links.tmp  mkdir .links.tmp
2263    touch .links.tmp/foo
2264    if test ! -r ".links.tmp/foo" ; then
2265        echo
2266        echo "ERROR : something is wrong with your directory permissions or"
2267        echo "   your user file-creation mask (\"umask\") since creating a"
2268        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2269        echo "   not working.  Please try setting your umask to something"
2270        echo "   sane such as:"
2271        echo
2272        echo "      umask 0002"
2273        echo
2274        echo "   and please verify that you have the proper permissions for"
2275        echo "   creating sub-directories and then reading files created"
2276        echo "   within them."
2277        echo
2278        exit 1
2279    fi
2280    rm -f .links.tmp/foo
2281  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2282  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2283  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2284  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2285  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2286  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2287  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2288  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2289  for d in $alldirs ; do  for d in $alldirs ; do
2290      deplist=      deplist=
# Line 1461  for d in $alldirs ; do Line 2293  for d in $alldirs ; do
2293      for sf in $sfiles ; do      for sf in $sfiles ; do
2294          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2295              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2296                    ignore_f=f
2297                  case $d/$sf in                  case $d/$sf in
2298                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2299                            ignore_f=t
2300                          ;;                          ;;
2301                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2302                            ignore_f=t
2303                          ;;                          ;;
2304                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2305                            ignore_f=t
2306                          ;;                          ;;
2307                    *)                    ./BUILD_INFO.h)
2308                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2309                          ;;                          ;;
2310                  esac                    ./EMBEDDED_FILES.h)
2311                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          ignore_f=t
                 case $extn in  
                     F)  
                         echo    " \\"  >> srclist.inc  
                         echo -n " $sf" >> srclist.inc  
                         ;;  
                     F90)  
                         echo    " \\"  >> f90srclist.inc  
                         echo -n " $sf" >> f90srclist.inc  
                         ;;  
                     c)  
                         echo    " \\"  >> csrclist.inc  
                         echo -n " $sf" >> csrclist.inc  
                         ;;  
                     h)  
                         echo    " \\"  >> hlist.inc  
                         echo -n " $sf" >> hlist.inc  
2312                          ;;                          ;;
2313                      flow)                    *)
2314                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2315                          echo -n " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2316                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2317                                ignore_f=t
2318                            else
2319                                touch .links.tmp/$sf
2320                                deplist="$deplist $sf"
2321                            fi
2322                          ;;                          ;;
2323                  esac                  esac
2324                    if test "x$ignore_f" = xf ; then
2325                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2326                        case $extn in
2327                            F)
2328                                echo    " \\"  >> srclist.inc
2329                                printf " $sf" >> srclist.inc
2330                                ;;
2331                            F90)
2332                                echo    " \\"  >> f90srclist.inc
2333                                printf " $sf" >> f90srclist.inc
2334                                ;;
2335                            c)
2336                                echo    " \\"  >> csrclist.inc
2337                                printf " $sf" >> csrclist.inc
2338                                ;;
2339                            h)
2340                                echo    " \\"  >> hlist.inc
2341                                printf " $sf" >> hlist.inc
2342                                ;;
2343                            flow)
2344                                echo    " \\"  >> ad_flow_files.inc
2345                                printf " $sf" >> ad_flow_files.inc
2346                                ;;
2347                        esac
2348                    fi
2349              fi              fi
2350          fi          fi
2351      done      done
# Line 1513  echo "" >> f90srclist.inc Line 2363  echo "" >> f90srclist.inc
2363  echo "" >> hlist.inc  echo "" >> hlist.inc
2364  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
2365    
2366  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2367      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2368  fi  fi
2369  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1522  echo "#    $MACHINE" >> $MAKEFILE Line 2372  echo "#    $MACHINE" >> $MAKEFILE
2372  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2373  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2374  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2375  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2376  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2377  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2378    
2379  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2380  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1570  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2420  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2420  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2421    
2422  # These files are created by Makefile  # These files are created by Makefile
2423  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2424  EOF  EOF
2425    
2426  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2427        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2428    else
2429        echo "EMBEDDED_FILES = " >>$MAKEFILE
2430    fi
2431    
2432    #  Note: figure out some way to add Hyades JAM libraries here
2433  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2434  # Unix ln (link)  # Unix ln (link)
2435  LN = ${LN}  LN = ${LN}
# Line 1589  KPP = ${KPP} Line 2443  KPP = ${KPP}
2443  FC = ${FC}  FC = ${FC}
2444  # Fortran compiler  # Fortran compiler
2445  F90C = ${F90C}  F90C = ${F90C}
2446    # C compiler
2447    CC = ${CC}
2448  # Link editor  # Link editor
2449  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2450    
# Line 1600  INCLUDES = ${INCLUDES} Line 2456  INCLUDES = ${INCLUDES}
2456  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2457  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2458  # Optim./debug for FC  # Optim./debug for FC
2459  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2460  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2461  # Optim./debug for FC  # Optim./debug for FC
2462  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
# Line 1611  CFLAGS = ${CFLAGS} Line 2467  CFLAGS = ${CFLAGS}
2467  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2468  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2469  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2470  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2471  # Name of the Mekfile  # Name of the Mekfile
2472  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2473    
# Line 1622  cat csrclist.inc      >> $MAKEFILE Line 2478  cat csrclist.inc      >> $MAKEFILE
2478  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2479  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2480  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2481  echo               >> $MAKEFILE  echo >> $MAKEFILE
2482  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2483  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2484  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2485    echo >> $MAKEFILE
2486    echo '.SUFFIXES:' >> $MAKEFILE
2487    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2488  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2489  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2490    
2491  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2492    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2493  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2494  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2495          @echo Creating \$@ ...          @echo Creating \$@ ...
2496          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2497  depend:  depend:
2498          @make links          @make links
2499          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2500          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2501            -rm -f makedepend.out
2502    
2503    lib: libmitgcmuv.a
2504    
2505    libmitgcmuv.a: \$(OBJFILES)
2506            ar rcv libmitgcmuv.a \$(OBJFILES)
2507            ar d   libmitgcmuv.a main.o
2508    
2509  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2510    
# Line 1653  output.txt: \$(EXECUTABLE) Line 2515  output.txt: \$(EXECUTABLE)
2515          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2516    
2517  clean:  clean:
2518          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2519            -rm -rf *.o
2520            -rm -rf *.$FS
2521  Clean:  Clean:
2522          @make clean          @make clean
2523          @make cleanlinks          @make cleanlinks
2524          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2525          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2526            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2527  CLEAN:  CLEAN:
2528          @make Clean          @make Clean
2529          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2530          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2531          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2532          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2533            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2534            -rm -rf mnc_test_*
2535    
2536  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2537  makefile:  makefile:
2538          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2539  cleanlinks:  cleanlinks:
2540          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2541    
2542  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2543  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2544          @echo Creating \$@ ...          @echo Creating \$@ ...
2545          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2546  AD_CONFIG.h:  AD_CONFIG.h:
2547          @echo Creating \$@ ...          @echo Creating \$@ ...
2548          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2549  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2550          @echo Creating \$@ ...          @echo Creating \$@ ...
2551          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2552    
2553  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2554  .F.f:          @echo Creating \$@ ...
2555    EOF
2556    
2557    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2558    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2559    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2560    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2561    
2562    if test "x$EMBED_SRC" = xt ; then
2563        cat >>$MAKEFILE <<EOF
2564    
2565    decode_files.o : EMBEDDED_FILES.h
2566    
2567    ##  \$(F77FILES)
2568    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2569            @echo Creating \$@ ...
2570            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2571            -rm -f all_fF.tar.gz
2572            -gzip all_fF.tar
2573    
2574    EMBEDDED_FILES.h : all_fF.tar.gz
2575            @echo Creating \$@ ...
2576            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2577    
2578    EOF
2579    fi
2580    
2581    cat >>$MAKEFILE <<EOF
2582    
2583    # The normal chain of rules is (  .F - .$FS - .o  )
2584    
2585    ## This nullifies any default implicit rules concerning these two file types:
2586    ## %.o : %.F
2587    
2588    .F.$FS:
2589          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2590  .f.o:  .$FS.o:
2591          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2592  .F90.f90:  .F90.o:  
         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  
 .f90.o:  
2593          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2594  .c.o:  .c.o:
2595          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2596    
2597  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2598  .F.p:  .F.p:
2599          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2600  .p.f:  .p.$FS:
2601          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2602    
2603  #=========================================  #=========================================
# Line 1717  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2616  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2616  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2617  for i in $ad_vars ; do  for i in $ad_vars ; do
2618      name=$i      name=$i
2619      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2620      eval $t1      eval $t1
2621      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2622      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2623  done  done
2624    
2625  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2626  echo >> $MAKEFILE  echo >> $MAKEFILE
2627  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2628  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2629  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2630      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2631      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2632  done  done
2633  echo >> $MAKEFILE  echo >> $MAKEFILE
2634  rm -f ad_files  rm -f ad_files
# Line 1737  rm -f ad_files Line 2636  rm -f ad_files
2636  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2637    
2638  # ... AD ...  # ... AD ...
2639  adall: ad_taf  adall: \$(EXE_AD)
2640  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2641  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2642    
2643  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2644          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2645          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2646          -rm -f ad_config.template          -rm -f ad_config.template
2647          @make \$(F77FILES)          @make \$(F77FILES)
2648          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2649          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2650    
2651  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2652          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2653          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2654    
2655  adtafonly:  adtafonly:
2656          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2657          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2658    
2659  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2660          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2661    
2662  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2663          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2664          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2665    
2666  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2667          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2668    
2669    adonlyfwd:
2670            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2671    
2672    adtrick:
2673            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2674    
2675  # ... FTL ...  # ... FTL ...
2676  ftlall: ftl_taf  ftlall: ftl_taf
2677  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2678  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2679    
2680  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2681          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2682          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2683          -rm -f ftl_config.template          -rm -f ftl_config.template
2684          @make \$(F77FILES)          @make \$(F77FILES)
2685          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2686          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2687    
2688  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2689          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2690          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2691    
2692  ftltafonly:  ftltafonly:
2693          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2694          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2695    
2696  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2697          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2698    
2699  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2700          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2701          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2702    
2703  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2704          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2705    
2706    
2707  # ... SVD ...  # ... SVD ...
2708  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2709  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2710            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2711    svdall: svd_touch svd_taf
2712    
2713  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2714          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2715    
2716            @echo "--->>> Only COMPILE svd code! <<<---"
2717            @echo "--->>> Assumes you previously <<<---"
2718            @echo "--->>> did make svdtaf        <<<---"
2719    
2720    svd_touch:
2721            @echo "--->>> Only COMPILE svd code! <<<---"
2722            @echo "--->>> Assumes you previously <<<---"
2723            @echo "--->>> did make svdtaf        <<<---"
2724            touch ad_taf_output.$FS ftl_taf_output.$FS
2725            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2726            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2727            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2728            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2729            -rm -f ftl_config.template
2730    
2731  #=========================================  #=========================================
2732    
# Line 1823  for i in $KPPFILES ; do Line 2743  for i in $KPPFILES ; do
2743      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2744          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2745      fi      fi
2746      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2747  done  done
2748    
2749  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1833  for i in $NOOPTFILES ; do Line 2753  for i in $NOOPTFILES ; do
2753      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2754          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2755      fi      fi
2756      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2757      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2758  done  done
2759    
# Line 1847  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2767  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2767  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2768    
2769  # Create special header files  # Create special header files
2770  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2771  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2772      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2773  else  else
# Line 1861  else Line 2781  else
2781      fi      fi
2782  fi  fi
2783  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2784      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2785  fi  fi
2786    
2787    
2788  #  Write the "state" for future records  #  Write the "state" for future records
2789  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2790      echo -n "" > genmake_state      printf "" > genmake_state
2791      for i in $gm_state ; do      for i in $gm_state ; do
2792          t1="t2=\$$i"          t1="t2=\$$i"
2793          eval $t1          eval $t1

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