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revision 1.66 by edhill, Mon Feb 23 21:51:32 2004 UTC revision 1.89 by edhill, Wed Jul 21 16:34:46 2004 UTC
# Line 37  test_for_string_in_file() { Line 37  test_for_string_in_file() {
37      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
41          grep -i "$strng" $file          grep -i "$strng" $file
42          return 1          return 1
43      fi      fi
# Line 67  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                rm -f ./genmake_cy_md
199                (
200                    cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
201                        &&  ./configure > /dev/null 2>&1  \
202                        &&  make > /dev/null 2>&1
203                    if test -x ./makedepend.exe ; then
204                        $LN ./makedepend.exe ./makedepend
205                    fi
206                    ./makedepend ifparser.c > /dev/null 2>&1  \
207                        &&  echo "true"
208                ) > ./genmake_cy_md
209                grep true ./genmake_cy_md > /dev/null 2>&1
210                RETVAL=$?
211                if test "x$RETVAL" = x0 ; then
212                    MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
213                else
214                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
215                fi
216                rm -f ./genmake_cy_md
217            fi
218        fi
219    }
220    
221    
222  # Guess possible config options for this host  # Guess possible config options for this host
223  find_possible_configs()  {  find_possible_configs()  {
224    
# Line 80  find_possible_configs()  { Line 227  find_possible_configs()  {
227      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
228      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
229      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
230      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
231        PLATFORM=$tmp3
232        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
233      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
234      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
235            
# Line 100  find_possible_configs()  { Line 249  find_possible_configs()  {
249          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
250      fi      fi
251    
252      # makedepend is not always available      look_for_makedepend
     if test "x${MAKEDEPEND}" = x ; then  
       which makedepend >& /dev/null  
       RETVAL=$?  
       if test "x${RETVAL}" = x1 ; then  
          echo "    makedepend was not found. Using xmakedpend instead."  
          MAKEDEPEND='$(TOOLSDIR)/xmakedepend'  
       fi  
     fi  
253    
254      # look for possible fortran compilers      # look for possible fortran compilers
255      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
# Line 145  EOF Line 286  EOF
286          echo "   "$p_FC          echo "   "$p_FC
287          if test "x$FC" = x ; then          if test "x$FC" = x ; then
288              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
289                echo "  Setting FORTRAN compiler to: "$FC
290          fi          fi
291      fi      fi
292    
293      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
294          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
295          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
296              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
297              echo "  The options file:  $p_OF"          fi
298              echo "    appears to match so we'll use it."      fi
299              break  #    echo "  The options file:  $p_OF"
300          fi  #    echo "    appears to match so we'll use it."
301      done  #   for i in $p_FC ; do
302    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
303    #if test -r $p_OF ; then
304    #    OPTFILE=$p_OF
305    #    echo "  The options file:  $p_OF"
306    #    echo "    appears to match so we'll use it."
307    #    break
308    #fi
309    #   done
310      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
311          cat 1>&2 <<EOF          cat 1>&2 <<EOF
312    
# Line 215  get_pdepend_list()  { Line 365  get_pdepend_list()  {
365      . ./.pd_tmp      . ./.pd_tmp
366      rm -f ./.pd_tmp      rm -f ./.pd_tmp
367    
368      echo -n "PNAME = "${}      printf "PNAME = "${}
369  }  }
370    
371    
# Line 229  Usage: "$0" [OPTIONS] Line 379  Usage: "$0" [OPTIONS]
379      -help | --help | -h | --h      -help | --help | -h | --h
380            Print this help message and exit.            Print this help message and exit.
381    
382        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
383          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
384              Use "NAME" as the adoptfile.  By default, the file at
385              "tools/adjoint_options/adjoint_default" will be used.
386    
387      -nooptfile | --nooptfile      -nooptfile | --nooptfile
388        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
389        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 253  Usage: "$0" [OPTIONS] Line 408  Usage: "$0" [OPTIONS]
408        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
409            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
410    
411        -makedepend NAME | -md NAME
412          --makedepend=NAME | -md=NAME
413              Use "NAME" for the MAKEDEPEND program.
414    
415      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
416        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
417            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 294  Usage: "$0" [OPTIONS] Line 453  Usage: "$0" [OPTIONS]
453            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
454            is being used.            is being used.
455    
456        -mpi | --mpi
457              Include MPI header files and link to MPI libraries
458        -mpi=PATH | --mpi=PATH
459              Include MPI header files and link to MPI libraries using MPI_ROOT
460              set to PATH. i.e. Include files from $PATH/include, link to libraries
461              from $PATH/lib and use binaries from $PATH/bin.
462    
463        -bash NAME
464              Explicitly specify the Bourne or BASH shell to use
465    
466    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
467    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
468    
# Line 314  EOF Line 483  EOF
483    
484  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
485  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
486    
487        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
488        if test ! "x$FC_NAMEMANGLE" = x ; then
489            return 0
490        fi
491    
492      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
493            
494      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 438  EOF Line 613  EOF
613    
614    
615  check_netcdf_libs()  {  check_netcdf_libs()  {
616      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.for
617        program fgennc        program fgennc
618  #include "netcdf.inc"  #include "netcdf.inc"
619        integer iret, ncid, xid        integer iret, ncid, xid
# Line 450  check_netcdf_libs()  { Line 625  check_netcdf_libs()  {
625        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
626        end        end
627  EOF  EOF
628      $CPP genmake_tnc.F > genmake_tnc.f  \      #echo "$CPP $DEFINES $INCLUDES"
629        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f  \
630          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
631      RET_COMPILE=$?      RET_COMPILE=$?
632      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
# Line 459  EOF Line 635  EOF
635          HAVE_NETCDF=t          HAVE_NETCDF=t
636      else      else
637          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
638          $CPP genmake_tnc.F > genmake_tnc.f  \          $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f  \
639              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \              &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
640              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1              $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
641          RET_COMPILE=$?          RET_COMPILE=$?
# Line 476  EOF Line 652  EOF
652  }  }
653    
654    
655    
656    ###############################################################################
657    #   Sequential part of script starts here
658    ###############################################################################
659    
660  #  Set defaults here  #  Set defaults here
661  COMMANDL="$0 $@"  COMMANDL="$0 $@"
662    
# Line 486  KPP= Line 667  KPP=
667  FC=  FC=
668  CPP=  CPP=
669  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
670  DEFINES=  DEFINES=
671  PACKAGES=  PACKAGES=
672  ENABLE=  ENABLE=
# Line 503  FOPTIM= Line 683  FOPTIM=
683  CFLAGS=  CFLAGS=
684  KFLAGS1=  KFLAGS1=
685  KFLAGS2=  KFLAGS2=
686    #LDADD=
687  LIBS=  LIBS=
688  KPPFILES=  KPPFILES=
689  NOOPTFILES=  NOOPTFILES=
690  NOOPTFLAGS=  NOOPTFLAGS=
691    MPI=
692    MPIPATH=
693    
694  # DEFINES checked by test compilation  # DEFINES checked by test compilation
695  HAVE_SYSTEM=  HAVE_SYSTEM=
# Line 514  HAVE_FDATE= Line 697  HAVE_FDATE=
697  FC_NAMEMANGLE=  FC_NAMEMANGLE=
698  HAVE_CLOC=  HAVE_CLOC=
699  HAVE_NETCDF=  HAVE_NETCDF=
700    HAVE_ETIME=
701    
702  MODS=  MODS=
703  TOOLSDIR=  TOOLSDIR=
# Line 521  SOURCEDIRS= Line 705  SOURCEDIRS=
705  INCLUDEDIRS=  INCLUDEDIRS=
706  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
707    
708    G2ARGS=
709    BASH=
710  PWD=`pwd`  PWD=`pwd`
711  MAKE=make  MAKE=make
712  AWK=awk  AWK=awk
# Line 536  IEEE= Line 722  IEEE=
722  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
723      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
724  fi  fi
725    FS=
726    FS90=
727    
728  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
729  AD_OPTFILE=  AD_OPTFILE=
# Line 560  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPE Line 748  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPE
748  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
749  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
750  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
751  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
752    
753  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
754  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 589  for i in . $MODS ; do Line 777  for i in . $MODS ; do
777          break          break
778      fi      fi
779  done  done
780  echo -n "  getting local config information:  "  printf "  getting local config information:  "
781  if test -e $gm_local ; then  if test -f $gm_local ; then
782      echo "using $gm_local"      echo "using $gm_local"
783      . $gm_local      . $gm_local
784      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 611  fi Line 799  fi
799  #done  #done
800  #parse_options  #parse_options
801  ac_prev=  ac_prev=
802  for ac_option ; do  for ac_option in $@ ; do
803    
804        G2ARGS="$G2ARGS \"$ac_option\""
805    
806      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
807      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 654  for ac_option ; do Line 844  for ac_option ; do
844          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
845              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
846                    
847            -bash | --bash)
848                ac_prev=BASH ;;
849            -bash=* | --bash=*)
850                BASH=$ac_optarg ;;
851            
852            -makedepend | --makedepend | -md | --md)
853                ac_prev=MAKEDEPEND ;;
854            -makedepend=* | --makedepend=* | -md=* | --md=*)
855                MAKEDEPEND=$ac_optarg ;;
856            
857          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
858              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
859          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 701  for ac_option ; do Line 901  for ac_option ; do
901          -fc=* | --fc=*)          -fc=* | --fc=*)
902              FC=$ac_optarg ;;              FC=$ac_optarg ;;
903                    
904            -fs | --fs)
905                ac_prev=FS ;;
906            -fs=* | --fs=*)
907                FS=$ac_optarg ;;
908            
909            -fs90 | --fs90)
910                ac_prev=FS90 ;;
911            -fs90=* | --fs90=*)
912                FS90=$ac_optarg ;;
913            
914          -ieee | --ieee)          -ieee | --ieee)
915              IEEE=true ;;              IEEE=true ;;
916          -noieee | --noieee)          -noieee | --noieee)
917              IEEE= ;;              IEEE= ;;
918    
919            -mpi | --mpi)
920                MPI=true ;;
921            -mpi=* | --mpi=*)
922                MPIPATH=$ac_optarg
923                MPI=true ;;
924                    
925  #       -jam | --jam)  #       -jam | --jam)
926  #           JAM=1 ;;  #           JAM=1 ;;
# Line 751  if test -f ./.genmakerc ; then Line 967  if test -f ./.genmakerc ; then
967  fi  fi
968    
969  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
970      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
971        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
972          ROOTDIR=".."          ROOTDIR=".."
973      else      else
974          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
975              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
976                  ROOTDIR=$d                  ROOTDIR=$d
977                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
978                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
979                  break                  break
980              fi              fi
# Line 791  if test "x$OPTFILE" != xNONE ; then Line 1008  if test "x$OPTFILE" != xNONE ; then
1008          . "$OPTFILE"          . "$OPTFILE"
1009          RETVAL=$?          RETVAL=$?
1010          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1011              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1012              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1013              exit 1              exit 1
1014          fi          fi
# Line 804  if test "x$OPTFILE" != xNONE ; then Line 1021  if test "x$OPTFILE" != xNONE ; then
1021      fi      fi
1022  fi  fi
1023    
1024    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1025    # check_for_broken_Ff
1026    
1027  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1028  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1029      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 818  if test "x${AD_OPTFILE}" != xNONE ; then Line 1038  if test "x${AD_OPTFILE}" != xNONE ; then
1038          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1039          RETVAL=$?          RETVAL=$?
1040          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1041              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1042              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1043              exit 1              exit 1
1044          fi          fi
# Line 833  fi Line 1053  fi
1053    
1054  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1055  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1056    if test ! "x$BASH" = x ; then
1057        # add a trailing space so that it works within the Makefile syntax (see below)
1058        BASH="$BASH "
1059    fi
1060  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1061      cat <<EOF 1>&2      cat <<EOF 1>&2
1062    
# Line 853  if test "x$CPP" = x ; then Line 1077  if test "x$CPP" = x ; then
1077      CPP=cpp      CPP=cpp
1078  fi  fi
1079  #EH3 === UGLY ===  #EH3 === UGLY ===
1080  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1081  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1082  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1083  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1084  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 877  EOF Line 1101  EOF
1101  else  else
1102      rm -f test_cpp      rm -f test_cpp
1103  fi  fi
1104  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1105  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1106      LN="ln -s"      LN="ln -s"
1107  fi  fi
# Line 897  EOF Line 1119  EOF
1119  fi  fi
1120  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1121    
1122    #  Check for broken *.F/*.f handling and fix if possible
1123    check_for_broken_Ff
1124    
1125    if test ! "x$MPI" = x ; then
1126          echo "  Turning on MPI cpp macros"
1127          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1128    fi
1129    
1130  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1131  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1132  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1133        program hello        program hello
1134        call system('echo hi')        call system('echo hi')
# Line 917  else Line 1146  else
1146  fi  fi
1147  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1148    
1149  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1150  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1151        program hello        program hello
1152        CHARACTER(128) string        CHARACTER(128) string
# Line 938  else Line 1167  else
1167  fi  fi
1168  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1169    
1170  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1171    cat > genmake_tcomp.f <<EOF
1172          program hello
1173          REAL*4 ACTUAL, TARRAY(2)
1174          EXTERNAL ETIME
1175          REAL*4 ETIME
1176          actual = etime( tarray )
1177          print *, tarray
1178          end
1179    EOF
1180    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1181    RETVAL=$?
1182    if test "x$RETVAL" = x0 ; then
1183        HAVE_ETIME=t
1184        DEFINES="$DEFINES -DHAVE_ETIME"
1185        echo "yes"
1186    else
1187        HAVE_ETIME=
1188        echo "no"
1189    fi
1190    rm -f genmake_tcomp*
1191    
1192    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1193  check_HAVE_CLOC  check_HAVE_CLOC
1194  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1195      echo "yes"      echo "yes"
# Line 947  else Line 1198  else
1198  fi  fi
1199  rm -f genmake_t*  rm -f genmake_t*
1200    
1201  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1202  check_netcdf_libs  check_netcdf_libs
1203  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1204      echo "yes"      echo "yes"
# Line 957  fi Line 1208  fi
1208    
1209    
1210  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1211  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1212  for d in $MODS ; do  for d in $MODS ; do
1213      if test ! -d $d ; then      if test ! -d $d ; then
1214          echo          echo
1215          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1216          exit 1          exit 1
1217      else      else
1218          echo -n " $d"          printf " $d"
1219          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1220          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1221      fi      fi
# Line 979  if test "x${PLATFORM}" = x ; then Line 1230  if test "x${PLATFORM}" = x ; then
1230  fi  fi
1231    
1232  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1233      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1234        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1235          EXEDIR=../exe          EXEDIR=../exe
1236      else      else
1237          EXEDIR=.          EXEDIR=.
# Line 1089  else Line 1341  else
1341          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1342          RETVAL=$?          RETVAL=$?
1343          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1344              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1345              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1346              exit 1              exit 1
1347          fi          fi
# Line 1097  else Line 1349  else
1349              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1350          done          done
1351          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1352          expand_pkg_groups          RET=1
1353            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1354          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1355      fi      fi
1356  fi  fi
1357    
1358  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1359    for i in $PACKAGES ; do
1360        echo $i >> ./.tmp_pack
1361    done
1362    for i in `grep  "-" ./.tmp_pack` ; do
1363        j=`echo $i | sed 's/[-]//'`
1364        DISABLE="$DISABLE $j"
1365    done
1366  pack=  pack=
1367  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1368      addit="t"      addit="t"
# Line 1119  PACKAGES="$pack" Line 1379  PACKAGES="$pack"
1379  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1380  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1381  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1382    # Test if each explicitly referenced package exists
1383  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1384      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1385        if test ! -d "$ROOTDIR/pkg/$j" ; then
1386          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1387          exit 1          exit 1
1388      fi      fi
1389      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1390  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1391  PACKAGES=  PACKAGES=
1392  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1393      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1394  done  done
1395    rm -f ./.tmp_pack
1396  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1397    
1398  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1198  while test "x$ck" != xtt ; do Line 1459  while test "x$ck" != xtt ; do
1459              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1460              exit 1              exit 1
1461          fi          fi
1462          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1463            #i=$(( $i + 1 ))
1464      done      done
1465      ck=$ck"t"      ck=$ck"t"
1466  done  done
# Line 1360  echo Line 1622  echo
1622  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1623  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1624  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1625      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1626          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1627      fi      fi
1628  done  done
# Line 1372  rm -rf .links.tmp Line 1632  rm -rf .links.tmp
1632  mkdir .links.tmp  mkdir .links.tmp
1633  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1634  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1635  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1636  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1637  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1638  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1639  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1640  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1641  for d in $alldirs ; do  for d in $alldirs ; do
1642      deplist=      deplist=
# Line 1401  for d in $alldirs ; do Line 1661  for d in $alldirs ; do
1661                  case $extn in                  case $extn in
1662                      F)                      F)
1663                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1664                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1665                          ;;                          ;;
1666                      F90)                      F90)
1667                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1668                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1669                          ;;                          ;;
1670                      c)                      c)
1671                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1672                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1673                          ;;                          ;;
1674                      h)                      h)
1675                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1676                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1677                          ;;                          ;;
1678                      flow)                      flow)
1679                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1680                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1681                          ;;                          ;;
1682                  esac                  esac
1683              fi              fi
# Line 1437  echo "" >> f90srclist.inc Line 1697  echo "" >> f90srclist.inc
1697  echo "" >> hlist.inc  echo "" >> hlist.inc
1698  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1699    
1700  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1701      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1702  fi  fi
1703  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1446  echo "#    $MACHINE" >> $MAKEFILE Line 1706  echo "#    $MACHINE" >> $MAKEFILE
1706  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1707  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1708  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1709  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1710  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1711  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1712    
# Line 1514  FC = ${FC} Line 1774  FC = ${FC}
1774  # Fortran compiler  # Fortran compiler
1775  F90C = ${F90C}  F90C = ${F90C}
1776  # Link editor  # Link editor
1777  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1778    
1779  # Defines for CPP  # Defines for CPP
1780  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1546  cat csrclist.inc      >> $MAKEFILE Line 1806  cat csrclist.inc      >> $MAKEFILE
1806  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1807  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1808  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1809  echo               >> $MAKEFILE  echo >> $MAKEFILE
1810  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1811  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1812  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1813    echo >> $MAKEFILE
1814    echo '.SUFFIXES:' >> $MAKEFILE
1815    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1816  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1817  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1818    
1819  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1820    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1821  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1822  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1823          @echo Creating \$@ ...          @echo Creating \$@ ...
1824          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1825  depend:  depend:
1826          @make links          @make links
1827          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1828          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1829            -rm -f makedepend.out
1830    
1831  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1832    
# Line 1577  output.txt: \$(EXECUTABLE) Line 1837  output.txt: \$(EXECUTABLE)
1837          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1838    
1839  clean:  clean:
1840          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1841  Clean:  Clean:
1842          @make clean          @make clean
1843          @make cleanlinks          @make cleanlinks
# Line 1588  CLEAN: Line 1848  CLEAN:
1848          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1849          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1850          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1851          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1852    
1853  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1854  makefile:  makefile:
1855          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
1856  cleanlinks:  cleanlinks:
1857          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1858    
1859  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets ($SPECIAL_FILES) which are create by make
1860  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
1861          @echo Creating \$@ ...          @echo Creating \$@ ...
1862          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1863  AD_CONFIG.h:  AD_CONFIG.h:
1864          @echo Creating \$@ ...          @echo Creating \$@ ...
1865          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1866  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
1867          @echo Creating \$@ ...          @echo Creating \$@ ...
1868          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
1869    
1870  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
1871  .F.f:  
1872    %.o : %.F
1873    
1874    .F.$FS:
1875          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1876  .f.o:  .$FS.o:
1877          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1878  .F90.f90:  .F90.$FS90:
1879          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1880  .f90.o:  .$FS90.o:
1881          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1882  .c.o:  .c.o:
1883          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1884    
1885  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
1886  .F.p:  .F.p:
1887          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1888  .p.f:  .p.$FS:
1889          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1890    
1891  #=========================================  #=========================================
# Line 1649  done Line 1912  done
1912    
1913  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1914  echo >> $MAKEFILE  echo >> $MAKEFILE
1915  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1916  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1917  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1918      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1919      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1920  done  done
1921  echo >> $MAKEFILE  echo >> $MAKEFILE
1922  rm -f ad_files  rm -f ad_files
# Line 1666  adtaf: ad_taf_output.f Line 1929  adtaf: ad_taf_output.f
1929  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1930    
1931  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1932          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1933          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1934          -rm -f ad_config.template          -rm -f ad_config.template
1935          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1698  ftltaf: ftl_taf_output.f Line 1961  ftltaf: ftl_taf_output.f
1961  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1962    
1963  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1964          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1965          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1966          -rm -f ftl_config.template          -rm -f ftl_config.template
1967          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1747  for i in $KPPFILES ; do Line 2010  for i in $KPPFILES ; do
2010      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2011          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2012      fi      fi
2013      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2014  done  done
2015    
2016  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1757  for i in $NOOPTFILES ; do Line 2020  for i in $NOOPTFILES ; do
2020      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2021          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2022      fi      fi
2023      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2024      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2025  done  done
2026    
# Line 1771  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2034  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2034  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2035    
2036  # Create special header files  # Create special header files
2037  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2038  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2039      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2040  else  else
# Line 1785  else Line 2048  else
2048      fi      fi
2049  fi  fi
2050  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2051      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2052  fi  fi
2053    
2054    
2055  #  Write the "state" for future records  #  Write the "state" for future records
2056  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2057      echo -n "" > genmake_state      printf "" > genmake_state
2058      for i in $gm_state ; do      for i in $gm_state ; do
2059          t1="t2=\$$i"          t1="t2=\$$i"
2060          eval $t1          eval $t1

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