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revision 1.65 by cnh, Mon Feb 16 16:24:41 2004 UTC revision 1.124 by edhill, Tue Jun 7 20:52:42 2005 UTC
# Line 37  test_for_string_in_file() { Line 37  test_for_string_in_file() {
37      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
41          grep -i "$strng" $file          grep -i "$strng" $file
42          return 1          return 1
43      fi      fi
# Line 67  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
126        cat <<EOF >> $MAKEFILE
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* $MAKEFILE
152        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
185            #  echo 'MAKEFILE="'$MAKEFILE'"'
186            cat <<EOF >> $MAKEFILE
187    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
188    #
189    #   Some "makedepend" implementations will die if they cannot
190    #   find a Makefile -- so this file is here to gives them an
191    #   empty one to find and parse.
192    EOF
193            cat <<EOF >> genmake_tc.f
194          program test
195          write(*,*) 'test'
196          stop
197          end
198    EOF
199            makedepend genmake_tc.f > /dev/null 2>&1
200            RV1=$?
201            test -f $MAKEFILE  &&  rm -f $MAKEFILE
202            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
203            if test "x${RV0}${RV1}" = x00 ; then
204                MAKEDEPEND=makedepend
205            else
206                echo "    a system-default makedepend was not found."
207                
208                #  Try to build the cyrus implementation
209                build_cyrus_makedepend
210                RETVAL=$?
211                if test "x$RETVAL" != x0 ; then
212                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
213                fi
214                rm -f ./genmake_cy_md
215            fi
216        else
217            #  echo "MAKEDEPEND=${MAKEDEPEND}"
218            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
219            RETVAL=$?
220            if test x"$RETVAL" = x0 ; then
221                build_cyrus_makedepend
222            fi
223        fi
224    }
225    
226    
227    build_cyrus_makedepend()  {
228        rm -f ./genmake_cy_md
229        (
230            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
231                &&  ./configure > /dev/null 2>&1  \
232                &&  make > /dev/null 2>&1
233            if test -x ./makedepend.exe ; then
234                $LN ./makedepend.exe ./makedepend
235            fi
236            ./makedepend ifparser.c > /dev/null 2>&1  \
237                &&  echo "true"
238        ) > ./genmake_cy_md
239        grep true ./genmake_cy_md > /dev/null 2>&1
240        RETVAL=$?
241        rm -f ./genmake_cy_md
242        if test "x$RETVAL" = x0 ; then
243            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
244            return 0
245        else
246            echo "WARNING: unable to build cyrus-imapd-makedepend"
247            return 1
248        fi
249    }
250    
251  # Guess possible config options for this host  # Guess possible config options for this host
252  find_possible_configs()  {  find_possible_configs()  {
253    
# Line 80  find_possible_configs()  { Line 256  find_possible_configs()  {
256      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
257      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
258      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
259      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
260        PLATFORM=$tmp3
261        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
262      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
263      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
264            
# Line 100  find_possible_configs()  { Line 278  find_possible_configs()  {
278          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
279      fi      fi
280    
281      # makedepend is not always available      look_for_makedepend
282      if test "x${MAKEDEPEND}" = x ; then  
283        which makedepend >& /dev/null      #================================================================
284        RETVAL=$?      #  look for possible C compilers
285        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
286           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
287           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
288        fi          rm -f ./genmake_hello.c  ./genmake_hello
289            cat >> genmake_hello.c << EOF
290    #include <stdio.h>
291    int main(int argc, char **argv) {
292      printf("Hello!\n");
293      return 0;
294    }
295    EOF
296            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
297            RETVAL=$?
298            if test "x${RETVAL}" = x0 ; then
299                p_CC="$p_CC $c"
300            fi
301        done
302        rm -f ./genmake_hello.c ./genmake_hello
303        if test "x${p_CC}" = x ; then
304            cat 1>&2 <<EOF
305    
306    Error: No C compilers were found in your path.  Please specify one using:
307    
308        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
309        2) the CC or MITGCM_CC environment variables.
310    
311    EOF
312            exit 1
313        else
314            echo "  The possible C compilers found in your path are:"
315            echo "   "$p_CC
316            if test "x$CC" = x ; then
317                CC=`echo $p_CC | $AWK '{print $1}'`
318                echo "  Setting C compiler to: "$CC
319            fi
320      fi      fi
321    
322      # look for possible fortran compilers      #================================================================
323      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
324        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"
325      p_FC=      p_FC=
326      for c in $tmp ; do      for c in $tmp ; do
327          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 136  Error: No Fortran compilers were found i Line 346  Error: No Fortran compilers were found i
346    
347      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
348      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
349      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
350    
351  EOF  EOF
352          exit 1          exit 1
# Line 145  EOF Line 355  EOF
355          echo "   "$p_FC          echo "   "$p_FC
356          if test "x$FC" = x ; then          if test "x$FC" = x ; then
357              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
358                echo "  Setting FORTRAN compiler to: "$FC
359          fi          fi
360      fi      fi
361    
362      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
363          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
364          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
365              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
366              echo "  The options file:  $p_OF"          fi
367              echo "    appears to match so we'll use it."      fi
368              break  #    echo "  The options file:  $p_OF"
369          fi  #    echo "    appears to match so we'll use it."
370      done  #   for i in $p_FC ; do
371    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
372    #if test -r $p_OF ; then
373    #    OPTFILE=$p_OF
374    #    echo "  The options file:  $p_OF"
375    #    echo "    appears to match so we'll use it."
376    #    break
377    #fi
378    #   done
379      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
380          cat 1>&2 <<EOF          cat 1>&2 <<EOF
381    
# Line 215  get_pdepend_list()  { Line 434  get_pdepend_list()  {
434      . ./.pd_tmp      . ./.pd_tmp
435      rm -f ./.pd_tmp      rm -f ./.pd_tmp
436    
437      echo -n "PNAME = "${}      printf "PNAME = "${}
438  }  }
439    
440    
# Line 229  Usage: "$0" [OPTIONS] Line 448  Usage: "$0" [OPTIONS]
448      -help | --help | -h | --h      -help | --help | -h | --h
449            Print this help message and exit.            Print this help message and exit.
450    
451        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
452          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
453              Use "NAME" as the adoptfile.  By default, the file at
454              "tools/adjoint_options/adjoint_default" will be used.
455    
456      -nooptfile | --nooptfile      -nooptfile | --nooptfile
457        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
458        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 253  Usage: "$0" [OPTIONS] Line 477  Usage: "$0" [OPTIONS]
477        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
478            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
479    
480        -makedepend NAME | -md NAME
481          --makedepend=NAME | -md=NAME
482              Use "NAME" for the MAKEDEPEND program.
483    
484      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
485        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
486            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 289  Usage: "$0" [OPTIONS] Line 517  Usage: "$0" [OPTIONS]
517            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
518            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
519    
520        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
521              Use "NAME" as the C compiler.  By default, genmake
522              will search for a working compiler by trying a list of
523              "usual suspects" such as gcc, c89, cc, etc.
524    
525      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
526            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
527            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
528            is being used.            is being used.
529    
530        -mpi | --mpi
531              Include MPI header files and link to MPI libraries
532        -mpi=PATH | --mpi=PATH
533              Include MPI header files and link to MPI libraries using MPI_ROOT
534              set to PATH. i.e. Include files from \$PATH/include, link to libraries
535              from \$PATH/lib and use binaries from \$PATH/bin.
536    
537        -bash NAME
538              Explicitly specify the Bourne or BASH shell to use
539    
540    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
541    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
542    
# Line 314  EOF Line 557  EOF
557    
558  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
559  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
560    
561        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
562        if test ! "x$FC_NAMEMANGLE" = x ; then
563            return 0
564        fi
565    
566      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
567            
568      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 331  WARNING: Please contact <MITgcm-support@ Line 580  WARNING: Please contact <MITgcm-support@
580  EOF  EOF
581          return 1          return 1
582      fi      fi
583      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
584      RETVAL=$?      RETVAL=$?
585      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
586          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 343  WARNING: Please contact <MITgcm-support@ Line 592  WARNING: Please contact <MITgcm-support@
592  EOF  EOF
593          return 1          return 1
594      fi      fi
595      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
596        subroutine tcall( string )        subroutine tcall( string )
597        character*(*) string        character*(*) string
598        call tsub( string )        call tsub( string )
599        end        end
600  EOF  EOF
601      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.$FS >> genmake_warnings 2>&1
602      RETVAL=$?      RETVAL=$?
603      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
604          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 361  WARNING: Please contact <MITgcm-support@ Line 610  WARNING: Please contact <MITgcm-support@
610  EOF  EOF
611          return 1          return 1
612      fi      fi
613      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
614      RETVAL=$?      RETVAL=$?
615      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
616          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 664  void FC_NAMEMANGLE(cloc) ( double *curti
664   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
665  }  }
666  EOF  EOF
667      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
668      RET_C=$?      RET_C=$?
669      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
670        program hello        program hello
671        Real*8 wtime        Real*8 wtime
672        external cloc        external cloc
# Line 425  EOF Line 674  EOF
674        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
675        end program hello        end program hello
676  EOF  EOF
677      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
678      RET_F=$?      RET_F=$?
679      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
680      RETVAL=$?      RETVAL=$?
681      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
682          HAVE_CLOC=t          HAVE_CLOC=t
# Line 437  EOF Line 686  EOF
686  }  }
687    
688    
689    check_HAVE_STAT()  {
690        get_fortran_c_namemangling
691        cat <<EOF > genmake_tc_1.c
692    $FC_NAMEMANGLE
693    #include <stdio.h>
694    #include <stdlib.h>
695    #include <unistd.h>
696    #include <sys/stat.h>
697    #include <sys/types.h>
698    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
699    {
700        char name[512];
701        struct stat astat;
702    
703        name[0] = 'a'; name[1] = '\0';
704        if (! stat(name, &astat))
705            *nbyte = (int)(astat.st_size);
706        else
707            *nbyte = -1;
708    }
709    EOF
710        make genmake_tc_1.o >> genmake_tc.log 2>&1
711        RET_C=$?
712        cat <<EOF > genmake_tc_2.$FS
713          program hello
714          integer nbyte
715          call tfsize(nbyte)
716          print *," HELLO WORLD", nbyte
717          end program hello
718    EOF
719        $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_tc.log 2>&1
720        RET_F=$?
721        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
722        RETVAL=$?
723        if test "x$RETVAL" = x0 ; then
724            HAVE_STAT=t
725            DEFINES="$DEFINES -DHAVE_STAT"
726        fi
727        rm -f genmake_tc*
728    }
729    
730    
731  check_netcdf_libs()  {  check_netcdf_libs()  {
732        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
733            return
734        fi
735        echo "" > genmake_tnc.log
736      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
737        program fgennc        program fgennc
738  #include "netcdf.inc"  #include "netcdf.inc"
739    EOF
740        if test ! "x$MPI" = x ; then
741            echo '#include "mpif.h"' >> genmake_tnc.F
742        fi
743        cat <<EOF >> genmake_tnc.F
744        integer iret, ncid, xid        integer iret, ncid, xid
745        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
746        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 450  check_netcdf_libs()  { Line 750  check_netcdf_libs()  {
750        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
751        end        end
752  EOF  EOF
753      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "Executing:" > genmake_tnc.log
754          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      echo "  $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS" \
755            > genmake_tnc.log
756        RET_CPP=f
757        $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
758            &&  RET_CPP=t
759        if test "x$RET_CPP" = xf ; then
760            echo "  WARNING: CPP failed to pre-process the netcdf test." \
761                > genmake_tnc.log
762            echo "    Please check that \$INCLUDES is properly set." \
763                > genmake_tnc.log
764        fi
765        echo "Executing:" > genmake_tnc.log
766        echo "  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS" > genmake_tnc.log
767        echo "  $LINK -o genmake_tnc.o $LIBS" > genmake_tnc.log
768        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
769            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
770      RET_COMPILE=$?      RET_COMPILE=$?
771      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1  
772      RETVAL=$?      #EH3  Remove test program execution for machines that either disallow
773      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  execution or cannot support it (eg. cross-compilers)
774        #EH3
775        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
776        #EH3 RETVAL=$?
777        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
778    
779        if test "x$RET_COMPILE" = x0 ; then
780          HAVE_NETCDF=t          HAVE_NETCDF=t
781      else      else
782          cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdf" added to the libs
783            $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
784                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
785                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
786            RET_COMPILE=$?
787            if test "x$RET_COMPILE" = x0 ; then
788                LIBS="$LIBS -lnetcdf"
789                HAVE_NETCDF=t
790            else
791                cat genmake_tnc.log >> genmake_warnings
792            fi
793      fi      fi
794      rm -f genmake_tnc*      rm -f genmake_tnc*
795  }  }
796    
797    
798    
799    ###############################################################################
800    #   Sequential part of script starts here
801    ###############################################################################
802    
803  #  Set defaults here  #  Set defaults here
804  COMMANDL="$0 $@"  COMMANDL="$0 $@"
805    
# Line 471  PLATFORM= Line 807  PLATFORM=
807  LN=  LN=
808  S64=  S64=
809  KPP=  KPP=
810  FC=  #FC=
811  CPP=  #CC=gcc
812    #CPP=
813  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
814  DEFINES=  DEFINES=
815  PACKAGES=  PACKAGES=
816  ENABLE=  ENABLE=
817  DISABLE=  DISABLE=
818  MAKEFILE=  # MAKEFILE=
819  MAKEDEPEND=  # MAKEDEPEND=
820  PDEPEND=  PDEPEND=
821  DUMPSTATE=t  DUMPSTATE=t
822  PDEFAULT=  PDEFAULT=
823  OPTFILE=  OPTFILE=
824  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
825  FFLAGS=  FFLAGS=
826  FOPTIM=  FOPTIM=
827  CFLAGS=  CFLAGS=
828  KFLAGS1=  KFLAGS1=
829  KFLAGS2=  KFLAGS2=
830    #LDADD=
831  LIBS=  LIBS=
832  KPPFILES=  KPPFILES=
833  NOOPTFILES=  NOOPTFILES=
834  NOOPTFLAGS=  NOOPTFLAGS=
835    MPI=
836    MPIPATH=
837    
838  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
839  HAVE_SYSTEM=  HAVE_SYSTEM=
840  HAVE_FDATE=  HAVE_FDATE=
841  FC_NAMEMANGLE=  FC_NAMEMANGLE=
842  HAVE_CLOC=  HAVE_CLOC=
843    HAVE_STAT=
844  HAVE_NETCDF=  HAVE_NETCDF=
845    HAVE_ETIME=
846    IGNORE_TIME=
847    
848  MODS=  MODS=
849  TOOLSDIR=  TOOLSDIR=
# Line 509  SOURCEDIRS= Line 851  SOURCEDIRS=
851  INCLUDEDIRS=  INCLUDEDIRS=
852  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
853    
854    G2ARGS=
855    BASH=
856  PWD=`pwd`  PWD=`pwd`
857  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
858  AWK=awk  test "x$AWK" = x   &&  AWK=awk
859  THISHOSTNAME=`hostname`  THISHOST=`hostname`
860  THISCWD=`pwd`  THISCWD=`pwd`
861  THISDATE=`date`  THISDATE=`date`
862    THISUSER=`echo $USER`
863    THISVER=
864  MACHINE=`uname -a`  MACHINE=`uname -a`
865  EXECUTABLE=  EXECUTABLE=
866  EXEHOOK=  EXEHOOK=
# Line 524  IEEE= Line 870  IEEE=
870  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
871      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
872  fi  fi
873    FS=
874    FS90=
875    
876  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
877  AD_OPTFILE=  AD_OPTFILE=
# Line 546  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STA Line 894  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STA
894  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
895  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
896  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
897  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
898  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
899  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
900    
901  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
902  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 577  for i in . $MODS ; do Line 925  for i in . $MODS ; do
925          break          break
926      fi      fi
927  done  done
928  echo -n "  getting local config information:  "  printf "  getting local config information:  "
929  if test -e $gm_local ; then  if test -f $gm_local ; then
930      echo "using $gm_local"      echo "using $gm_local"
931      . $gm_local      . $gm_local
932      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 587  else Line 935  else
935      echo "none found"      echo "none found"
936  fi  fi
937    
938  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
939  #OPTIONS=  #OPTIONS=
940  #n=0  #n=0
941  #for i ; do  #for i ; do
# Line 599  fi Line 947  fi
947  #done  #done
948  #parse_options  #parse_options
949  ac_prev=  ac_prev=
950  for ac_option ; do  for ac_option in "$@" ; do
951    
952        G2ARGS="$G2ARGS \"$ac_option\""
953    
954      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
955      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 642  for ac_option ; do Line 992  for ac_option ; do
992          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
993              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
994                    
995            -bash | --bash)
996                ac_prev=BASH ;;
997            -bash=* | --bash=*)
998                BASH=$ac_optarg ;;
999            
1000            -makedepend | --makedepend | -md | --md)
1001                ac_prev=MAKEDEPEND ;;
1002            -makedepend=* | --makedepend=* | -md=* | --md=*)
1003                MAKEDEPEND=$ac_optarg ;;
1004            
1005          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1006              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1007          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 683  for ac_option ; do Line 1043  for ac_option ; do
1043  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1044  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1045  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1046                        
1047            -cc | --cc)
1048                ac_prev=CC ;;
1049            -cc=* | --cc=*)
1050                CC=$ac_optarg ;;
1051            
1052          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1053              ac_prev=FC ;;              ac_prev=FC ;;
1054          -fc=* | --fc=*)          -fc=* | --fc=*)
1055              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1056                    
1057            -fs | --fs)
1058                ac_prev=FS ;;
1059            -fs=* | --fs=*)
1060                FS=$ac_optarg ;;
1061            
1062            -fs90 | --fs90)
1063                ac_prev=FS90 ;;
1064            -fs90=* | --fs90=*)
1065                FS90=$ac_optarg ;;
1066            
1067          -ieee | --ieee)          -ieee | --ieee)
1068              IEEE=true ;;              IEEE=true ;;
1069          -noieee | --noieee)          -noieee | --noieee)
1070              IEEE= ;;              IEEE= ;;
1071    
1072            -mpi | --mpi)
1073                MPI=true ;;
1074            -mpi=* | --mpi=*)
1075                MPIPATH=$ac_optarg
1076                MPI=true ;;
1077                    
1078  #       -jam | --jam)  #       -jam | --jam)
1079  #           JAM=1 ;;  #           JAM=1 ;;
# Line 711  for ac_option ; do Line 1092  for ac_option ; do
1092              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1093          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1094              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1095            
1096            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1097                IGNORE_TIME="-DIGNORE_TIME" ;;
1098    
1099          -*)          -*)
1100              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 726  for ac_option ; do Line 1110  for ac_option ; do
1110            
1111  done  done
1112    
1113    
1114  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1115      echo      echo
1116      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 738  if test -f ./.genmakerc ; then Line 1123  if test -f ./.genmakerc ; then
1123      echo      echo
1124  fi  fi
1125    
1126    #  Find the MITgcm ${ROOTDIR}
1127  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1128      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1129        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1130          ROOTDIR=".."          ROOTDIR=".."
1131      else      else
1132          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1133              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1134                  ROOTDIR=$d                  ROOTDIR=$d
1135                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1136                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1137                  break                  break
1138              fi              fi
# Line 763  if test ! -d ${ROOTDIR} ; then Line 1150  if test ! -d ${ROOTDIR} ; then
1150      exit 1      exit 1
1151  fi  fi
1152    
1153    #  Find the MITgcm ${THISVER}
1154    if test -f "${ROOTDIR}/doc/tag-index" ; then
1155        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1156    fi
1157    
1158    if test "x$MAKEFILE" = x ; then
1159        MAKEFILE="Makefile"
1160    fi
1161    
1162  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1163  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1164      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 779  if test "x$OPTFILE" != xNONE ; then Line 1175  if test "x$OPTFILE" != xNONE ; then
1175          . "$OPTFILE"          . "$OPTFILE"
1176          RETVAL=$?          RETVAL=$?
1177          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1178              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1179              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1180              exit 1              exit 1
1181          fi          fi
# Line 806  if test "x${AD_OPTFILE}" != xNONE ; then Line 1202  if test "x${AD_OPTFILE}" != xNONE ; then
1202          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1203          RETVAL=$?          RETVAL=$?
1204          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1205              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1206              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1207              exit 1              exit 1
1208          fi          fi
# Line 819  if test "x${AD_OPTFILE}" != xNONE ; then Line 1215  if test "x${AD_OPTFILE}" != xNONE ; then
1215      fi      fi
1216  fi  fi
1217    
1218  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1219    #  Set default values if not set by the optfile
1220    #
1221    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1222  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1223    if test ! "x$BASH" = x ; then
1224        # add a trailing space so that it works within the Makefile syntax (see below)
1225        BASH="$BASH "
1226    fi
1227  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1228      cat <<EOF 1>&2      cat <<EOF 1>&2
1229    
# Line 831  Error: no Fortran compiler: please speci Line 1234  Error: no Fortran compiler: please speci
1234  EOF  EOF
1235      exit 1      exit 1
1236  fi  fi
1237    if test "x$CC" = x ; then
1238        CC=cc
1239    #     cat <<EOF 1>&2
1240    # Error: no C compiler: please specify using one of the following:
1241    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1242    #   2) the "-cc=XXX" command-line option
1243    #   3) the "./genmake_local" file
1244    # EOF
1245    #     exit 1
1246    fi
1247  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1248      LINK=$FC      LINK=$FC
1249  fi  fi
# Line 841  if test "x$CPP" = x ; then Line 1254  if test "x$CPP" = x ; then
1254      CPP=cpp      CPP=cpp
1255  fi  fi
1256  #EH3 === UGLY ===  #EH3 === UGLY ===
1257  #  The following an ugly little hack to check for $CPP in /lib/ and it  #  The following is an ugly little hack to check for $CPP in /lib/ and
1258  #  should eventually be replaced with a more general function that  #  it should eventually be replaced with a more general function that
1259  #  searches a combo of the user's path and a list of "usual suspects"  #  searches a combo of the user's path and a list of "usual suspects"
1260  #  to find the correct location for binaries such as $CPP.  #  to find the correct location for binaries such as $CPP.
1261  for i in " " "/lib/" ; do  for i in " " "/lib/" ; do
# Line 865  EOF Line 1278  EOF
1278  else  else
1279      rm -f test_cpp      rm -f test_cpp
1280  fi  fi
1281  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1282  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1283      LN="ln -s"      LN="ln -s"
1284  fi  fi
# Line 885  EOF Line 1296  EOF
1296  fi  fi
1297  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1298    
1299    #  Check for broken *.F/*.f handling and fix if possible
1300    check_for_broken_Ff
1301    
1302    if test ! "x$MPI" = x ; then
1303          echo "  Turning on MPI cpp macros"
1304          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1305    fi
1306    
1307  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1308  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1309  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1310        program hello        program hello
1311        call system('echo hi')        call system('echo hi')
1312        end        end
1313  EOF  EOF
1314  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1315  RETVAL=$?  RETVAL=$?
1316  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1317      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 905  else Line 1323  else
1323  fi  fi
1324  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1325    
1326  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1327  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1328        program hello        program hello
1329        CHARACTER(128) string        CHARACTER(128) string
1330        string = ' '        string = ' '
# Line 914  cat > genmake_tcomp.f <<EOF Line 1332  cat > genmake_tcomp.f <<EOF
1332        print *, string        print *, string
1333        end        end
1334  EOF  EOF
1335  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1336  RETVAL=$?  RETVAL=$?
1337  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1338      HAVE_FDATE=t      HAVE_FDATE=t
# Line 926  else Line 1344  else
1344  fi  fi
1345  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1346    
1347  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1348    cat > genmake_tcomp.$FS <<EOF
1349          program hello
1350          REAL*4 ACTUAL, TARRAY(2)
1351          EXTERNAL ETIME
1352          REAL*4 ETIME
1353          actual = etime( tarray )
1354          print *, tarray
1355          end
1356    EOF
1357    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1358    RETVAL=$?
1359    if test "x$RETVAL" = x0 ; then
1360        HAVE_ETIME=t
1361        DEFINES="$DEFINES -DHAVE_ETIME"
1362        echo "yes"
1363    else
1364        HAVE_ETIME=
1365        echo "no"
1366    fi
1367    rm -f genmake_tcomp*
1368    
1369    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1370  check_HAVE_CLOC  check_HAVE_CLOC
1371  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1372      echo "yes"      echo "yes"
# Line 935  else Line 1375  else
1375  fi  fi
1376  rm -f genmake_t*  rm -f genmake_t*
1377    
1378  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we use stat() through C calls...  "
1379    check_HAVE_STAT
1380    if test "x$HAVE_STAT" != x ; then
1381        echo "yes"
1382    else
1383        echo "no"
1384    fi
1385    rm -f genmake_t*
1386    
1387    printf "  Can we create NetCDF-enabled binaries...  "
1388  check_netcdf_libs  check_netcdf_libs
1389  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1390      echo "yes"      echo "yes"
1391  else  else
1392      echo "no"      echo "no"
1393  fi  fi
1394    DEFINES="$DEFINES $IGNORE_TIME"
1395    
1396  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1397  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1398  for d in $MODS ; do  for d in $MODS ; do
1399      if test ! -d $d ; then      if test ! -d $d ; then
1400          echo          echo
1401          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1402          exit 1          exit 1
1403      else      else
1404          echo -n " $d"          printf " $d"
1405          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1406          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1407      fi      fi
1408  done  done
1409  echo  echo
1410    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1411  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1412      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1413  fi  fi
1414    
1415  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1416      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1417        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1418          EXEDIR=../exe          EXEDIR=../exe
1419      else      else
1420          EXEDIR=.          EXEDIR=.
# Line 986  if test ! -d ${TOOLSDIR} ; then Line 1433  if test ! -d ${TOOLSDIR} ; then
1433      exit 1      exit 1
1434  fi  fi
1435  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1436      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1437        RETVAL=$?
1438        if test "x${RETVAL}" = x0 ; then
1439            S64='$(TOOLSDIR)/set64bitConst.sh'
1440        else
1441            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1442            RETVAL=$?
1443            if test "x${RETVAL}" = x0 ; then
1444                S64='$(TOOLSDIR)/set64bitConst.csh'
1445            else
1446                cat <<EOF
1447    
1448    ERROR: neither of the two default scripts:
1449    
1450        ${TOOLSDIR}/set64bitConst.sh
1451        ${TOOLSDIR}/set64bitConst.csh
1452    
1453      are working so please check paths or specify (with \$S64) a
1454      working version of this script.
1455    
1456    EOF
1457                exit 1
1458            fi
1459        fi
1460  fi  fi
1461  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1462    
# Line 1077  else Line 1547  else
1547          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1548          RETVAL=$?          RETVAL=$?
1549          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1550              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1551              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1552              exit 1              exit 1
1553          fi          fi
# Line 1085  else Line 1555  else
1555              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1556          done          done
1557          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1558          expand_pkg_groups          RET=1
1559            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1560          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1561      fi      fi
1562  fi  fi
1563    
1564  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1565    for i in $PACKAGES ; do
1566        echo $i >> ./.tmp_pack
1567    done
1568    for i in `grep  "-" ./.tmp_pack` ; do
1569        j=`echo $i | sed 's/[-]//'`
1570        DISABLE="$DISABLE $j"
1571    done
1572  pack=  pack=
1573  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1574      addit="t"      addit="t"
# Line 1107  PACKAGES="$pack" Line 1585  PACKAGES="$pack"
1585  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1586  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1587  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1588    # Test if each explicitly referenced package exists
1589  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1590      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1591        if test ! -d "$ROOTDIR/pkg/$j" ; then
1592          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1593          exit 1          exit 1
1594      fi      fi
1595      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1596  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1597  PACKAGES=  PACKAGES=
1598  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1599      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1600  done  done
1601    rm -f ./.tmp_pack
1602  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1603    
1604    #  Check availability of NetCDF and then either build the MNC template
1605    #  files or delete mnc from the list of available packages.
1606    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1607    RETVAL=$?
1608    if test "x$RETVAL" = x0 ; then
1609        if test "x$HAVE_NETCDF" != xt ; then
1610            cat <<EOF
1611    
1612    *********************************************************************
1613    WARNING: the "mnc" package was enabled but tests failed to compile
1614      NetCDF applications.  Please check that:
1615    
1616      1) NetCDF is correctly installed for this compiler and
1617      2) the LIBS variable (within the "optfile") specifies the correct
1618           NetCDF library to link against.
1619    
1620      Due to this failure, the "mnc" package is now DISABLED.
1621    *********************************************************************
1622    
1623    EOF
1624            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1625            DISABLE="$DISABLE mnc"
1626        else
1627            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1628            RETVAL=$?
1629            if test "x${RETVAL}" = x0 ; then
1630                rm -f make_mnc.errors
1631            else
1632                echo "Error: problem encountered while building source files in pkg/mnc:"
1633                cat make_mnc.errors 1>&2
1634                exit 1
1635            fi
1636        fi
1637    fi
1638    
1639  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1640  ck=  ck=
1641  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1186  while test "x$ck" != xtt ; do Line 1700  while test "x$ck" != xtt ; do
1700              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1701              exit 1              exit 1
1702          fi          fi
1703          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1704            #i=$(( $i + 1 ))
1705      done      done
1706      ck=$ck"t"      ck=$ck"t"
1707  done  done
# Line 1205  for i in $PACKAGES ; do Line 1720  for i in $PACKAGES ; do
1720      fi      fi
1721  done  done
1722    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
1723  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1724  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1725  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1251  for n in $names ; do Line 1739  for n in $names ; do
1739              fi              fi
1740          done          done
1741          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1742              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
1743              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1744          fi          fi
1745      fi      fi
1746  done  done
1747  ENABLED_PACKAGES=  ENABLED_PACKAGES=
1748  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1749      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
1750      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1751  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1752    
# Line 1342  for i in $SOURCEDIRS ; do Line 1830  for i in $SOURCEDIRS ; do
1830          cat $i/$j >> ad_files          cat $i/$j >> ad_files
1831      done      done
1832  done  done
1833    if test ! "x"$FS = "x.f" ; then
1834        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
1835        mv -f ad_files_f ad_files
1836    fi
1837    
1838  echo  echo
1839  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1840  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1841  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1842      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1843          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1844      fi      fi
1845  done  done
# Line 1360  rm -rf .links.tmp Line 1849  rm -rf .links.tmp
1849  mkdir .links.tmp  mkdir .links.tmp
1850  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1851  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1852  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1853  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1854  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1855  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1856  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1857  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1858  for d in $alldirs ; do  for d in $alldirs ; do
1859      deplist=      deplist=
# Line 1380  for d in $alldirs ; do Line 1869  for d in $alldirs ; do
1869                          ;;                          ;;
1870                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
1871                          ;;                          ;;
1872                      ./BUILD_INFO.h)
1873                            ;;
1874                    *)                    *)
1875                          touch .links.tmp/$sf                          touch .links.tmp/$sf
1876                          deplist="$deplist $sf"                          deplist="$deplist $sf"
1877                          ;;                          ;;
1878                  esac                  esac
1879                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F. '{print $NF}'`
1880                  case $extn in                  case $extn in
1881                      F)                      F)
1882                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1883                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1884                          ;;                          ;;
1885                      F90)                      F90)
1886                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1887                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1888                          ;;                          ;;
1889                      c)                      c)
1890                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1891                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1892                          ;;                          ;;
1893                      h)                      h)
1894                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1895                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1896                          ;;                          ;;
1897                      flow)                      flow)
1898                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1899                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1900                          ;;                          ;;
1901                  esac                  esac
1902              fi              fi
# Line 1425  echo "" >> f90srclist.inc Line 1916  echo "" >> f90srclist.inc
1916  echo "" >> hlist.inc  echo "" >> hlist.inc
1917  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1918    
1919  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1920      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1921  fi  fi
1922  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1434  echo "#    $MACHINE" >> $MAKEFILE Line 1925  echo "#    $MACHINE" >> $MAKEFILE
1925  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1926  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1927  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1928  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1929  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1930  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1931    
1932  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
1933  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1482  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 1973  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1973  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1974    
1975  # These files are created by Makefile  # These files are created by Makefile
1976  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1977    
1978  EOF  EOF
1979    
# Line 1501  KPP = ${KPP} Line 1992  KPP = ${KPP}
1992  FC = ${FC}  FC = ${FC}
1993  # Fortran compiler  # Fortran compiler
1994  F90C = ${F90C}  F90C = ${F90C}
1995    # C compiler
1996    CC = ${CC}
1997  # Link editor  # Link editor
1998  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1999    
2000  # Defines for CPP  # Defines for CPP
2001  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1523  CFLAGS = ${CFLAGS} Line 2016  CFLAGS = ${CFLAGS}
2016  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2017  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2018  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2019  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2020  # Name of the Mekfile  # Name of the Mekfile
2021  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2022    
# Line 1534  cat csrclist.inc      >> $MAKEFILE Line 2027  cat csrclist.inc      >> $MAKEFILE
2027  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2028  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2029  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2030  echo               >> $MAKEFILE  echo >> $MAKEFILE
2031  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2032  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
2033  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2034    echo >> $MAKEFILE
2035    echo '.SUFFIXES:' >> $MAKEFILE
2036    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2037  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2038  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2039    
2040  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2041    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2042  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2043  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
2044          @echo Creating \$@ ...          @echo Creating \$@ ...
2045          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2046  depend:  depend:
2047          @make links          @make links
2048          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2049          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2050            -rm -f makedepend.out
2051    
2052  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2053    
# Line 1565  output.txt: \$(EXECUTABLE) Line 2058  output.txt: \$(EXECUTABLE)
2058          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2059    
2060  clean:  clean:
2061          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2062  Clean:  Clean:
2063          @make clean          @make clean
2064          @make cleanlinks          @make cleanlinks
# Line 1576  CLEAN: Line 2069  CLEAN:
2069          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2070          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2071          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2072          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
2073    
2074  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2075  makefile:  makefile:
2076          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2077  cleanlinks:  cleanlinks:
2078          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2079    
2080  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2081  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2082          @echo Creating \$@ ...          @echo Creating \$@ ...
2083          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2084  AD_CONFIG.h:  AD_CONFIG.h:
2085          @echo Creating \$@ ...          @echo Creating \$@ ...
2086          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2087  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2088          @echo Creating \$@ ...          @echo Creating \$@ ...
2089          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2090    
2091  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2092  .F.f:          @echo Creating \$@ ...
2093    EOF
2094    
2095    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2096    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2097    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2098    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2099    
2100    cat >>$MAKEFILE <<EOF
2101    
2102    # The normal chain of rules is (  .F - .$FS - .o  )
2103    
2104    ## This nullifies any default implicit rules concerning these two file types:
2105    ## %.o : %.F
2106    
2107    .F.$FS:
2108          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2109  .f.o:  .$FS.o:
2110          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2111  .F90.f90:  .F90.$FS90:
2112          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2113  .f90.o:  .$FS90.o:
2114          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2115  .c.o:  .c.o:
2116          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2117    
2118  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2119  .F.p:  .F.p:
2120          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2121  .p.f:  .p.$FS:
2122          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2123    
2124  #=========================================  #=========================================
# Line 1637  done Line 2145  done
2145    
2146  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2147  echo >> $MAKEFILE  echo >> $MAKEFILE
2148  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2149  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2150  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2151      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2152      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2153  done  done
2154  echo >> $MAKEFILE  echo >> $MAKEFILE
2155  rm -f ad_files  rm -f ad_files
# Line 1650  cat >>$MAKEFILE <<EOF Line 2158  cat >>$MAKEFILE <<EOF
2158    
2159  # ... AD ...  # ... AD ...
2160  adall: ad_taf  adall: ad_taf
2161  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2162  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2163    
2164  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2165          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2166          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2167          -rm -f ad_config.template          -rm -f ad_config.template
2168          @make \$(F77FILES)          @make \$(F77FILES)
2169          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2170          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2171    
2172  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2173          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2174          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2175    
2176  adtafonly:  adtafonly:
2177          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2178          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2179    
2180  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2181          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2182    
2183  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2184          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2185          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2186    
2187  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2188          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2189    
2190    adonlyfwd:
2191            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2192    
2193    adtrick:
2194            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2195    
2196  # ... FTL ...  # ... FTL ...
2197  ftlall: ftl_taf  ftlall: ftl_taf
2198  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2199  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2200    
2201  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2202          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2203          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2204          -rm -f ftl_config.template          -rm -f ftl_config.template
2205          @make \$(F77FILES)          @make \$(F77FILES)
2206          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2207          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2208    
2209  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2210          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2211          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2212    
2213  ftltafonly:  ftltafonly:
2214          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2215          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2216    
2217  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2218          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2219    
2220  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2221          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2222          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2223    
2224  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2225          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2226    
2227    
2228  # ... SVD ...  # ... SVD ...
2229  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2230  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2231            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2232    svdall: svd_touch svd_taf
2233    
2234  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2235          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2236    
2237            @echo "--->>> Only COMPILE svd code! <<<---"
2238            @echo "--->>> Assumes you previously <<<---"
2239            @echo "--->>> did make svdtaf        <<<---"
2240    
2241    svd_touch:
2242            @echo "--->>> Only COMPILE svd code! <<<---"
2243            @echo "--->>> Assumes you previously <<<---"
2244            @echo "--->>> did make svdtaf        <<<---"
2245            touch ad_taf_output.$FS ftl_taf_output.$FS
2246            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2247            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2248            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2249            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2250            -rm -f ftl_config.template
2251    
2252  #=========================================  #=========================================
2253    
# Line 1735  for i in $KPPFILES ; do Line 2264  for i in $KPPFILES ; do
2264      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2265          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2266      fi      fi
2267      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2268  done  done
2269    
2270  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1745  for i in $NOOPTFILES ; do Line 2274  for i in $NOOPTFILES ; do
2274      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2275          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2276      fi      fi
2277      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2278      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2279  done  done
2280    
# Line 1759  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2288  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2288  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2289    
2290  # Create special header files  # Create special header files
2291  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2292  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2293      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2294  else  else
# Line 1773  else Line 2302  else
2302      fi      fi
2303  fi  fi
2304  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2305      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2306  fi  fi
2307    
2308    
2309  #  Write the "state" for future records  #  Write the "state" for future records
2310  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2311      echo -n "" > genmake_state      printf "" > genmake_state
2312      for i in $gm_state ; do      for i in $gm_state ; do
2313          t1="t2=\$$i"          t1="t2=\$$i"
2314          eval $t1          eval $t1

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