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revision 1.15 by edhill, Tue Oct 21 18:35:08 2003 UTC revision 1.62 by edhill, Thu Jan 15 19:19:59 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          echo -n "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 72  find_possible_configs()  { Line 77  find_possible_configs()  {
77    
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
86            
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 100  find_possible_configs()  {
100          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
101      fi      fi
102    
103        # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111        fi
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in $tmp ; do      for c in $tmp ; do
117          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 128  EOF
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131        rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          cat 1>&2 <<EOF          cat 1>&2 <<EOF
134    
# Line 204  get_pdepend_list()  { Line 212  get_pdepend_list()  {
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 213  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
227      echo    where [OPTIONS] can be:
228      echo "    -help | --help | -h | --h"  
229      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
230      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
231      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
232      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
233      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
237      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
238      echo "    -makefile NAME | -mf NAME"  
239      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
240      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
242      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
243      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
244      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
246      echo "    -disable NAME | --disable NAME"  
247      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
248      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
249      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
250      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
251      echo "      -standarddirs=NAME | --standarddirs=NAME"  
252      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
253      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
254  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
255  #    echo "      -cpp=NAME | --cpp=NAME"  
256      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo "      -fc=NAME | --fc=NAME"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "    -[no]ieee | --[no]ieee"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo "    -[no]mpi | --[no]mpi"            By default, genamke will try to find the location by
260      echo "    -[no]jam | --[no]jam"            looking in parent directories (up to the 5th parent).
261      echo  
262      echo "  and NAME is a string such as:"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
263      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Here, "NAME" specifies a list of directories that are
265      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            used for additional source code.  Files found in the
266      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            "mods list" are given preference over files of the same
267      echo            name found elsewhere.
268      echo "  which, depending upon your shell, may need to be single-quoted"  
269      echo "  if it contains spaces, dashes, or other special characters."      -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
316  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
317  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
319  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
320  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
321  #eh3 set LINK       = $FC  EOF
322  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
323  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
324  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
325  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
326  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
327  #eh3 set KFLAGS1    = (  )  
328  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
329  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
332  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363        fi
364        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375        fi
376    
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398    }
399    
400    
401    check_HAVE_CLOC()  {
402        get_fortran_c_namemangling
403        cat <<EOF > genmake_tc_1.c
404    $FC_NAMEMANGLE
405    #include <stdio.h>
406    #include <stdlib.h>
407    #include <unistd.h>
408    #include <assert.h>
409    #include <sys/time.h>
410    void FC_NAMEMANGLE(cloc) ( double *curtim )
411    {
412     struct timeval tv1;
413     gettimeofday(&tv1 , (void *)NULL );
414     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415     *curtim = *curtim/1.E6;
416    }
417    EOF
418        make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440    check_netcdf_libs()  {
441        cat <<EOF > genmake_tnc.F
442          program fgennc
443    #include "netcdf.inc"
444          integer iret, ncid, xid
445          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
446          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
447          iret = nf_def_dim(ncid, 'X', 11, xid)
448          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
449          iret = nf_close(ncid)
450          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
451          end
452    EOF
453        $CPP genmake_tnc.F > genmake_tnc.f  \
454            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
455        RET_COMPILE=$?
456        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
457        RETVAL=$?
458        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
459            HAVE_NETCDF=t
460        else
461            cat genmake_tnc.log >> genmake_warnings
462        fi
463        rm -f genmake_tnc*
464    }
465    
466    
467  #  Set defaults here  #  Set defaults here
468  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 289  LN= Line 472  LN=
472  S64=  S64=
473  KPP=  KPP=
474  FC=  FC=
475    CPP=
476  LINK=  LINK=
477  DEFINES="-DWORDLENGTH=4"  # DEFINES="-DWORDLENGTH=4"
478    DEFINES=
479  PACKAGES=  PACKAGES=
480  ENABLE=  ENABLE=
481  DISABLE=  DISABLE=
# Line 311  KPPFILES= Line 496  KPPFILES=
496  NOOPTFILES=  NOOPTFILES=
497  NOOPTFLAGS=  NOOPTFLAGS=
498    
499    # DEFINES checked by test compilation
500    HAVE_SYSTEM=
501    HAVE_FDATE=
502    FC_NAMEMANGLE=
503    HAVE_CLOC=
504    HAVE_NETCDF=
505    
506  MODS=  MODS=
507  TOOLSDIR=  TOOLSDIR=
508  SOURCEDIRS=  SOURCEDIRS=
509  INCLUDEDIRS=  INCLUDEDIRS=
510  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
511    
512  PWD=`pwd`  PWD=`pwd`
513  MAKE=make  MAKE=make
# Line 335  fi Line 527  fi
527    
528  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
529  AD_OPTFILE=  AD_OPTFILE=
530    TAF=
531    AD_TAF_FLAGS=
532    FTL_TAF_FLAGS=
533    SVD_TAF_FLAGS=
534    TAF_EXTRA=
535    TAMC=
536    AD_TAMC_FLAGS=
537    FTL_TAF_FLAGS=
538    SVD_TAMC_FLAGS=
539    TAMC_EXTRA=
540    
541    
542  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
543  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
544  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
545    
546  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
547  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
548  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
549  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
550  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
551    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
552    
553  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
554  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
555  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
556  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA"
557    
558  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
559    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
560    
561    cat <<EOF
562    
563    GENMAKE :
564    
565    A program for GENerating MAKEfiles for the MITgcm project.  For a
566    quick list of options, use "genmake -h" or for more detail see:
567    
568      http://mitgcm.org/devel_HOWTO/
569    
570    EOF
571    
 echo  
572  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
573  gm_local="genmake_local"  gm_local="genmake_local"
574  for i in . $MODS ; do  for i in . $MODS ; do
575      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
576          source $i/$gm_local          . $i/$gm_local
577          break          break
578      fi      fi
579  done  done
580  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
581  if test -e $gm_local ; then  if test -e $gm_local ; then
582      echo "using $gm_local"      echo "using $gm_local"
583      source $gm_local      . $gm_local
584      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
585      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
586  else  else
# Line 408  for ac_option ; do Line 622  for ac_option ; do
622          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
623              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
624                    
625          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
626              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
627          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
628              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 433  for ac_option ; do Line 647  for ac_option ; do
647          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
648              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
649                    
650          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
651              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
652          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
653              PLATFORM=$ac_optarg ;;              echo
654                usage
655                ;;
656                    
657          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
658              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 463  for ac_option ; do Line 679  for ac_option ; do
679          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
680              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
681    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
682  #           -cpp | --cpp)  #           -cpp | --cpp)
683  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
684  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 483  for ac_option ; do Line 694  for ac_option ; do
694          -noieee | --noieee)          -noieee | --noieee)
695              IEEE= ;;              IEEE= ;;
696                    
697          -mpi | --mpi)  #       -jam | --jam)
698              MPI=true ;;  #           JAM=1 ;;
699          -nompi | --nompi)  #       -nojam | --nojam)
700              MPI= ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
701                    
702          -ds | --ds)          -ds | --ds)
703              DUMPSTATE=t ;;              DUMPSTATE=t ;;
704                    
705            -taf_extra | --taf_extra)
706                ac_prev=TAF_EXTRA ;;
707            -taf_extra=* | --taf_extra=*)
708                TAF_EXTRA=$ac_optarg ;;
709    
710            -tamc_extra | --tamc_extra)
711                ac_prev=TAMC_EXTRA ;;
712            -tamc_extra=* | --tamc_extra=*)
713                TAMC_EXTRA=$ac_optarg ;;
714    
715          -*)          -*)
716              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
717              usage              usage
# Line 560  fi Line 776  fi
776  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
777      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
778          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
779          source "$OPTFILE"          . "$OPTFILE"
780          RETVAL=$?          RETVAL=$?
781          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
782              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 587  fi Line 803  fi
803  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
804      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
805          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
806          source "$AD_OPTFILE"          . "$AD_OPTFILE"
807          RETVAL=$?          RETVAL=$?
808          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
809              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
# Line 603  if test "x${AD_OPTFILE}" != xNONE ; then Line 819  if test "x${AD_OPTFILE}" != xNONE ; then
819      fi      fi
820  fi  fi
821    
822  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
823  #  and abort!  #  either set defaults or complain and abort!
824  if test "x$FC" = x ; then  if test "x$FC" = x ; then
825      cat <<EOF 1>&2      cat <<EOF 1>&2
826    
# Line 621  fi Line 837  fi
837  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
838      CPP="cpp"      CPP="cpp"
839  fi  fi
840    if test "x$MAKE" = x ; then
841        MAKE="make"
842    fi
843  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
844  RETVAL=$?  RETVAL=$?
845  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 630  Error: C pre-processor "$CPP" failed the Line 849  Error: C pre-processor "$CPP" failed the
849    
850    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
851    2) the "./genmake_local" file    2) the "./genmake_local" file
852      3) with the CPP environment variable
853    
854  EOF  EOF
855      exit 1      exit 1
# Line 639  fi Line 859  fi
859  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
860      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
861  fi  fi
862    if test "x$LN" = x ; then
863        LN="ln -s"
864    fi
865    echo "test" > genmake_test_ln
866    $LN genmake_test_ln genmake_tlink
867    RETVAL=$?
868    if test "x$RETVAL" != x0 ; then
869        cat <<EOF 1>&2
870    
871    Error: The command "ln -s" failed -- please specify a working soft-link
872      command in the optfile.
873    
874    EOF
875        exit 1
876    fi
877    rm -f genmake_test_ln genmake_tlink
878    
879    
880    printf "\n===  Checking system libraries  ===\n"
881    echo -n "  Do we have the system() command using $FC...  "
882    cat > genmake_tcomp.f <<EOF
883          program hello
884          call system('echo hi')
885          end
886    EOF
887    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
888    RETVAL=$?
889    if test "x$RETVAL" = x0 ; then
890        HAVE_SYSTEM=t
891        DEFINES="$DEFINES -DHAVE_SYSTEM"
892        echo "yes"
893    else
894        HAVE_SYSTEM=
895        echo "no"
896    fi
897    rm -f genmake_tcomp*
898    
899    echo -n "  Do we have the fdate() command using $FC...  "
900    cat > genmake_tcomp.f <<EOF
901          program hello
902          CHARACTER(128) string
903          string = ' '
904          call fdate( string )
905          print *, string
906          end
907    EOF
908    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
909    RETVAL=$?
910    if test "x$RETVAL" = x0 ; then
911        HAVE_FDATE=t
912        DEFINES="$DEFINES -DHAVE_FDATE"
913        echo "yes"
914    else
915        HAVE_FDATE=
916        echo "no"
917    fi
918    rm -f genmake_tcomp*
919    
920    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
921    check_HAVE_CLOC
922    if test "x$HAVE_CLOC" != x ; then
923        echo "yes"
924    else
925        echo "no"
926    fi
927    rm -f genmake_t*
928    
929    echo -n "  Can we create NetCDF-enabled binaries...  "
930    check_netcdf_libs
931    if test "x$HAVE_NETCDF" != x ; then
932        echo "yes"
933    else
934        echo "no"
935    fi
936    
937    
938  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
939  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 684  fi Line 979  fi
979  if test "x$S64" = x ; then  if test "x$S64" = x ; then
980      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
981  fi  fi
982    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
983    
984  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
985    
# Line 692  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 988  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
988  #  they appear as regular source code  #  they appear as regular source code
989  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
990      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
991      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
992      RETVAL=$?      RETVAL=$?
993      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
994          rm -f make_eesupp.errors          rm -f make_eesupp.errors
995      else      else
996          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
997          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
998          exit 1          exit 1
999      fi      fi
1000  fi  fi
1001    
1002    #same for exch2
1003    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1004        echo "  Making source files in exch2 from  templates"
1005        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1006        RETVAL=$?
1007        if test "x${RETVAL}" = x0 ; then
1008            rm -f make_exch2.errors
1009        else
1010            echo "Error: problem encountered while building source files in exch2:"
1011            cat make_exch2.errors 1>&2
1012            exit 1
1013        fi
1014    fi
1015    
1016  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1017  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1018      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 729  if test ! "x${RETVAL}" = x0 ; then Line 1039  if test ! "x${RETVAL}" = x0 ; then
1039      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1040      exit 1      exit 1
1041  fi  fi
1042  source ./.pd_tmp  . ./.pd_tmp
1043  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1044    
1045  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1046  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1047  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1048  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1049  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1050      for i in "." $MODS ; do      for i in "." $MODS ; do
1051          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 748  if test "x${PDEFAULT}" = x ; then Line 1058  if test "x${PDEFAULT}" = x ; then
1058      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1059  fi  fi
1060  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1061      echo "default packages file disabled"      echo "    default packages file disabled"
1062  else  else
1063      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1064          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1065      else      else
1066          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1067          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1068          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1069          RETVAL=$?          RETVAL=$?
# Line 887  for i in $PACKAGES ; do Line 1196  for i in $PACKAGES ; do
1196      fi      fi
1197  done  done
1198    
1199  #  This is compatible with the old genmake.  The "DISABLE_*" flags  #  Build MNC templates and check for ability to build and use NetCDF
1200  #  need to be replaced by the "ALLOW_*" flags set below.  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1201  #  RETVAL=$?
1202  # echo -n "  Setting package-specific CPP flags:  "  if test "x$RETVAL" = x0 ; then
1203  # pkrm=( mom_fluxform mom_vecinv generic_advdiff )      ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1204  # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )      RETVAL=$?
1205  # echo -n "  "      if test "x${RETVAL}" = x0 ; then
1206  # i=0          rm -f make_mnc.errors
1207  # while test $i -lt "${#pkrm[@]}" ; do      else
1208  #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1          echo "Error: problem encountered while building source files in pkg/mnc:"
1209  #     RETVAL=$?          cat make_mnc.errors 1>&2
1210  #     if test "x$RETVAL" = x1 ; then          exit 1
1211  #       DEFINES="$DEFINES ${pkdef[$i]}"      fi
1212  #       echo -n " ${pkdef[$i]}"      if test -a "x$HAVE_NETCDF" != xt ; then
1213  #     fi          cat <<EOF
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 # Create a list of #define and #undef to enable/disable packages  
 PACKAGES_DOT_H=PACKAGES_CONFIG.h  
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1214    
1215  #ifndef PACKAGES_H  WARNING: the "mnc" package has been enabled but tests failed to
1216  #define PACKAGES_H    compile and/or execute NetCDF applications.  Please check that:
1217    
1218  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1219      2) the LIBS variable (within the 'optfile") specifies the correct
1220           NetCDF library to link against.
1221      
1222  EOF  EOF
1223        fi
1224    fi
1225    
1226    # Create a list of #define and #undef to enable/disable packages
1227    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1228  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1229  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1230  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1231  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1232  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1233  all_pack=  all_pack=
1234    DISABLED_PACKAGES=
1235  for n in $names ; do  for n in $names ; do
1236      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1237          has_pack="f"          has_pack="f"
# Line 937  for n in $names ; do Line 1243  for n in $names ; do
1243          done          done
1244          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1245              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1246              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1247          fi          fi
1248      fi      fi
1249  done  done
1250  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1251  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1252      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1253      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1254  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1255    
1256  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1257      case $i in      case $i in
1258          aim_v23)          aim_v23)
1259              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1260              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1261              ;;              ;;
1262      esac      esac
1263  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1264    
1265  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1266    
1267  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1268  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1269  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1270      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1271  fi  fi
1272  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1273      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1274      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1275          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1276          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1277          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1278      else              exit 1
1279          SOURCEDIRS="$SOURCEDIRS $adr"          else
1280      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1281      adr="$ROOTDIR/$d/inc"          fi
1282      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1283          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1284          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1285          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1286      else              exit 1
1287          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1288      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1289  done          fi
1290        done
1291    fi
1292    
1293  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1294  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1295  CPP_OPTIONS=  CPP_OPTIONS=
1296    CPP_EEOPTIONS=
1297  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1298    names=`ls -1 "$ROOTDIR/pkg"`
1299  for i in $spaths ; do  for i in $spaths ; do
1300      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1301      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1302          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1303          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1304          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1305            for n in $names ; do
1306                test_for_package_in_cpp_options $CPP_OPTIONS $n
1307            done
1308        fi
1309        try="$i/CPP_EEOPTIONS.h"
1310        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1311            echo "    found CPP_EEOPTIONS=\"$try\""
1312            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1313    #**** not yet enabled ****
1314    #        test_for_mpi_in_cpp_eeoptions $try
1315    #**** not yet enabled ****
1316            CPP_EEOPTIONS="$try"
1317      fi      fi
1318  done  done
1319  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1320      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1321      exit 1      exit 1
1322  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1323    
1324  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1325  #  compiler.  #  compiler.
# Line 1056  for i in $SOURCEDIRS ; do Line 1334  for i in $SOURCEDIRS ; do
1334      done      done
1335  done  done
1336    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1337    
1338  echo  echo
1339  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1097  for d in $alldirs ; do Line 1364  for d in $alldirs ; do
1364      for sf in $sfiles ; do      for sf in $sfiles ; do
1365          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1366              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1367                    case $d/$sf in
1368                      ./$PACKAGES_DOT_H)
1369                            ;;
1370                      ./AD_CONFIG.h)
1371                            ;;
1372                      ./FC_NAMEMANGLE.h)
1373                            ;;
1374                      *)
1375                            touch .links.tmp/$sf
1376                            deplist="$deplist $sf"
1377                            ;;
1378                    esac
1379                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1380                  case $extn in                  case $extn in
1381                      F)                      F)
1382                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 1151  echo "# by the command:" >> $MAKEFILE Line 1428  echo "# by the command:" >> $MAKEFILE
1428  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1429  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1430  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1431    
1432    EXE_AD=$EXECUTABLE"_ad"
1433    EXE_FTL=$EXECUTABLE"_ftl"
1434    EXE_SVD=$EXECUTABLE"_svd"
1435    
1436  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1437    #
1438    # OPTFILE="$OPTFILE"
1439  #  #
1440  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1441  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1181  TOOLSDIR    = ${TOOLSDIR} Line 1465  TOOLSDIR    = ${TOOLSDIR}
1465    
1466  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
1467  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1468    EXE_AD      = ${EXE_AD}
1469    EXE_FTL     = ${EXE_FTL}
1470    EXE_SVD     = ${EXE_SVD}
1471    
1472    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1473    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1474    
1475    # These files are created by Makefile
1476    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1477    
1478  EOF  EOF
1479    
# Line 1246  cat >>$MAKEFILE <<EOF Line 1539  cat >>$MAKEFILE <<EOF
1539  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1540    
1541  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1542  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1543            @echo Creating \$@ ...
1544          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1545  depend:  depend:
1546          @make links          @make links
1547          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1548          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1549    
1550  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1551    
1552  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1553    
# Line 1262  output.txt: \$(EXECUTABLE) Line 1556  output.txt: \$(EXECUTABLE)
1556          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1557    
1558  clean:  clean:
1559          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1560  Clean:  Clean:
1561          @make clean          @make clean
1562          @make cleanlinks          @make cleanlinks
1563          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES)
1564            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1565  CLEAN:  CLEAN:
1566          @make Clean          @make Clean
1567          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1274  CLEAN: Line 1569  CLEAN:
1569          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1570          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt
1571    
1572  Makefile: makefile  #eh3 Makefile: makefile
1573  makefile:  makefile:
1574          ${0} $@          $THIS_SCRIPT $@
1575  cleanlinks:  cleanlinks:
1576          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1577    
1578    # Special targets ($SPECIAL_FILES) which are create by make
1579    ${PACKAGES_DOT_H}:
1580            @echo Creating \$@ ...
1581            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1582    AD_CONFIG.h:
1583            @echo Creating \$@ ...
1584            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1585    FC_NAMEMANGLE.h:
1586            @echo Creating \$@ ...
1587            echo "$FC_NAMEMANGLE" > \$@
1588    
1589  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1590  .F.f:  .F.f:
1591          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1304  cleanlinks: Line 1610  cleanlinks:
1610  TAMC           = ${TAMC}  TAMC           = ${TAMC}
1611  TAF            = ${TAF}  TAF            = ${TAF}
1612    
1613    TAF_EXTRA      = ${TAF_EXTRA}
1614    TAMC_EXTRA     = ${TAMC_EXTRA}
1615    
1616  EOF  EOF
1617    
1618  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1326  for i in $AD_FILES ; do Line 1635  for i in $AD_FILES ; do
1635      echo -n " $i" >> $MAKEFILE      echo -n " $i" >> $MAKEFILE
1636  done  done
1637  echo >> $MAKEFILE  echo >> $MAKEFILE
1638    rm -f ad_files
1639    
1640  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1641    
1642    # ... AD ...
1643  ad_input_code.f: \$(F77FILES)  adall: ad_taf
1644    adtaf: ad_taf_output.f
1645    adtamc: ad_tamc_output.f
1646    
1647    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1648            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1649            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1650            -rm -f ad_config.template
1651            @make \$(F77FILES)
1652          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1653          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1654    
   
1655  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1656          \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1657          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1658    
1659  ad_taf: ad_taf_output.o \$(OBJFILES)  adtafonly:
1660          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1661            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1662    
1663    ad_taf: ad_taf_output.o \$(OBJFILES)
1664            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1665    
1666  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1667          \$(TAMC) \$(AD_TAMC_FLAGS) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1668          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1669    
1670  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1671          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1672    
1673    
1674    # ... FTL ...
1675    ftlall: ftl_taf
1676    ftltaf: ftl_taf_output.f
1677    ftltamc: ftl_tamc_output.f
1678    
1679    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1680            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1681            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1682            -rm -f ftl_config.template
1683            @make \$(F77FILES)
1684            @make \$(AD_FLOW_FILES)
1685            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1686    
1687    ftl_taf_output.f: ftl_input_code.f
1688            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1689            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1690    
1691    ftltafonly:
1692            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1693            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1694    
1695    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1696            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1697    
1698    ftl_tamc_output.f: ftl_input_code.f
1699            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1700            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1701    
1702  flt_taf_output.f: ad_input_code.f  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1703          \$(TAF) \$(FTL_TAF_FLAGS) ad_input_code.f          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  
1704    
 flt_taf: flt_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)  
1705    
1706    # ... SVD ...
1707    svdtaf: ad_taf_output.f ftl_taf_output.f
1708    svdall: svd_taf
1709    
1710    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1711            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1712    
1713    
1714  #=========================================  #=========================================
# Line 1398  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1749  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1749    
1750  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1751    
1752    # Create special header files
1753    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1754    if test ! -f $PACKAGES_DOT_H ; then
1755        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1756    else
1757        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1758        RETVAL=$?
1759        if test "x$RETVAL" = x0 ; then
1760            rm -f $PACKAGES_DOT_H".tmp"
1761        else
1762            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1763            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1764        fi
1765    fi
1766    if test ! -f AD_CONFIG.h ; then
1767        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1768    fi
1769    
1770    
1771  #  Write the "state" for future records  #  Write the "state" for future records
1772  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then

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