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revision 1.62 by edhill, Thu Jan 15 19:19:59 2004 UTC revision 1.149 by edhill, Thu May 11 20:28:50 2006 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 45  test_for_string_in_file() {
45      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 67  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 80  find_possible_configs()  { Line 299  find_possible_configs()  {
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 100  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # makedepend is not always available      look_for_makedepend
325      if test "x${MAKEDEPEND}" = x ; then  
326        which makedepend >& /dev/null      #================================================================
327        RETVAL=$?      #  look for possible C compilers
328        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
329           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
330           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
331        fi          rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 136  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 215  get_pdepend_list()  { Line 485  get_pdepend_list()  {
485      . ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
# Line 229  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 253  Usage: "$0" [OPTIONS] Line 528  Usage: "$0" [OPTIONS]
528        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
529            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
530    
531        -makedepend NAME | -md NAME
532          --makedepend=NAME | -md=NAME
533              Use "NAME" for the MAKEDEPEND program.
534    
535      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 289  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604    
605        -mpi | --mpi
606              Include MPI header files and link to MPI libraries
607        -mpi=PATH | --mpi=PATH
608              Include MPI header files and link to MPI libraries using MPI_ROOT
609              set to PATH. i.e. Include files from \$PATH/include, link to libraries
610              from \$PATH/lib and use binaries from \$PATH/bin.
611    
612        -es | --es | -embed-source | --embed-source
613              Embed a tarball containing the full source code
614              (including the Makefile, etc.) used to build the
615              executable [off by default]
616    
617        -bash NAME
618              Explicitly specify the Bourne or BASH shell to use
619    
620    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
621    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
622    
# Line 314  EOF Line 637  EOF
637    
638  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
639  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
640    
641        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
642        if test ! "x$FC_NAMEMANGLE" = x ; then
643            return 0
644        fi
645    
646      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
647            
648      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 331  WARNING: Please contact <MITgcm-support@ Line 660  WARNING: Please contact <MITgcm-support@
660  EOF  EOF
661          return 1          return 1
662      fi      fi
663      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
664      RETVAL=$?      RETVAL=$?
665      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
666          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 343  WARNING: Please contact <MITgcm-support@ Line 672  WARNING: Please contact <MITgcm-support@
672  EOF  EOF
673          return 1          return 1
674      fi      fi
675      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
676        subroutine tcall( string )        subroutine tcall( string )
677        character*(*) string        character*(*) string
678        call tsub( string )        call tsub( string )
679        end        end
680  EOF  EOF
681      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
682      RETVAL=$?      RETVAL=$?
683      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
684          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 361  WARNING: Please contact <MITgcm-support@ Line 690  WARNING: Please contact <MITgcm-support@
690  EOF  EOF
691          return 1          return 1
692      fi      fi
693      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
694      RETVAL=$?      RETVAL=$?
695      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
696          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 744  void FC_NAMEMANGLE(cloc) ( double *curti
744   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
745  }  }
746  EOF  EOF
747      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
748      RET_C=$?      RET_C=$?
749      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
750        program hello        program hello
751        Real*8 wtime        REAL*8 wtime
752        external cloc        external cloc
753        call cloc(wtime)        call cloc(wtime)
754        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
755        end program hello        end
756  EOF  EOF
757      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
758      RET_F=$?      RET_F=$?
759      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
760      RETVAL=$?      RETVAL=$?
761      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
762          HAVE_CLOC=t          HAVE_CLOC=t
# Line 437  EOF Line 766  EOF
766  }  }
767    
768    
769    check_HAVE_SIGREG()  {
770        get_fortran_c_namemangling
771        cat <<EOF > genmake_tc_1.c
772    $FC_NAMEMANGLE
773    #include <stdlib.h>
774    #include <stdio.h>
775    #include <signal.h>
776    #include <errno.h>
777    #include <ucontext.h>
778    
779    int * ip;
780    
781    static void killhandler(
782        unsigned int sn, siginfo_t  si, struct ucontext *sc )
783    {
784        *ip = *ip + 1;
785        return;
786    }
787    
788    void FC_NAMEMANGLE(sigreg) (int * aip)
789    {
790        struct sigaction s;
791        ip = aip;
792        s.sa_flags = SA_SIGINFO;
793        s.sa_sigaction = (void *)killhandler;
794        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
795            printf("Sigaction returned error = %d\n", errno);
796            exit(0);
797        }
798        return;
799    }
800    EOF
801        make genmake_tc_1.o >> genmake_warnings 2>&1
802        RET_C=$?
803        cat <<EOF > genmake_tc_2.$FS
804          program hello
805          integer anint
806          common /iv/ anint
807          external sigreg
808          call sigreg(anint)
809          end
810    EOF
811        echo >> genmake_warnings
812        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
813        cat genmake_tc_2.$FS >> genmake_warnings
814        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
815        echo $COMM >> genmake_warnings
816        $COMM >> genmake_warnings 2>&1
817        RETVAL=$?
818        if test "x$RETVAL" = x0 ; then
819            HAVE_SIGREG=t
820            DEFINES="$DEFINES -DHAVE_SIGREG"
821        fi
822        rm -f genmake_tc*
823    }
824    
825    
826    check_HAVE_SETRLSTK()  {
827        get_fortran_c_namemangling
828        cat <<EOF > genmake_tc_1.c
829    $FC_NAMEMANGLE
830    #include <sys/time.h>
831    #include <sys/resource.h>
832    #include <unistd.h>
833    void FC_NAMEMANGLE(setrlstk) ()
834    {
835        struct rlimit rls;
836        rls.rlim_cur = RLIM_INFINITY;
837        rls.rlim_max = RLIM_INFINITY;
838        setrlimit(RLIMIT_STACK, &rls);
839        return;
840    }
841    EOF
842        make genmake_tc_1.o >> genmake_warnings 2>&1
843        RET_C=$?
844        cat <<EOF > genmake_tc_2.$FS
845          program hello
846          external setrlstk
847          call setrlstk()
848          end
849    EOF
850        echo >> genmake_warnings
851        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
852        cat genmake_tc_2.$FS >> genmake_warnings
853        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
854        echo $COMM >> genmake_warnings
855        $COMM >> genmake_warnings 2>&1
856        RETVAL=$?
857        if test "x$RETVAL" = x0 ; then
858            HAVE_SETRLSTK=t
859            DEFINES="$DEFINES -DHAVE_SETRLSTK"
860        fi
861        rm -f genmake_tc*
862    }
863    
864    
865    check_HAVE_STAT()  {
866        get_fortran_c_namemangling
867        cat <<EOF > genmake_tc_1.c
868    $FC_NAMEMANGLE
869    #include <stdio.h>
870    #include <stdlib.h>
871    #include <unistd.h>
872    #include <sys/stat.h>
873    #include <sys/types.h>
874    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
875    {
876        char name[512];
877        struct stat astat;
878    
879        name[0] = 'a'; name[1] = '\0';
880        if (! stat(name, &astat))
881            *nbyte = (int)(astat.st_size);
882        else
883            *nbyte = -1;
884    }
885    EOF
886        make genmake_tc_1.o >> genmake_tc.log 2>&1
887        RET_C=$?
888        cat <<EOF > genmake_tc_2.$FS
889          program hello
890          integer nbyte
891          call tfsize(nbyte)
892          print *," HELLO WORLD", nbyte
893          end
894    EOF
895        echo >> genmake_warnings
896        echo "running: check_HAVE_STAT()" >> genmake_warnings
897        cat genmake_tc_2.$FS >> genmake_warnings
898        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
899        echo $COMM >> genmake_warnings
900        $COMM >> genmake_tc.log 2>&1
901        RETVAL=$?
902        if test "x$RETVAL" = x0 ; then
903            HAVE_STAT=t
904            DEFINES="$DEFINES -DHAVE_STAT"
905        fi
906        rm -f genmake_tc*
907    }
908    
909    
910  check_netcdf_libs()  {  check_netcdf_libs()  {
911        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
912            return
913        fi
914        echo >> genmake_warnings
915        echo "running: check_netcdf_libs()" >> genmake_warnings
916      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
917        program fgennc        program fgennc
918  #include "netcdf.inc"  #include "netcdf.inc"
919    EOF
920        if test ! "x$MPI" = x ; then
921            echo '#include "mpif.h"' >> genmake_tnc.F
922        fi
923        cat <<EOF >> genmake_tnc.F
924        integer iret, ncid, xid        integer iret, ncid, xid
925        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
926        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 450  check_netcdf_libs()  { Line 930  check_netcdf_libs()  {
930        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
931        end        end
932  EOF  EOF
933      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
934          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
935        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
936        RET_CPP=f
937        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
938        echo "$COMM" >> genmake_tnc.log
939        $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
940        if test "x$RET_CPP" = xf ; then
941            echo "  WARNING: CPP failed to pre-process the netcdf test." \
942                >> genmake_tnc.log
943            echo "    Please check that \$INCLUDES is properly set." \
944                >> genmake_tnc.log
945        fi
946        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
947        echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log
948        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
949            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
950      RET_COMPILE=$?      RET_COMPILE=$?
951      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
952      RETVAL=$?  
953      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
954        #EH3  execution or cannot support it (eg. cross-compilers)
955        #EH3
956        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
957        #EH3 RETVAL=$?
958        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
959    
960        if test "x$RET_COMPILE" = x0 ; then
961          HAVE_NETCDF=t          HAVE_NETCDF=t
962      else      else
963            # try again with "-lnetcdf" added to the libs
964            echo "try again with added '-lnetcdf'" > genmake_tnc.log
965            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
966            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
967            echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
968            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
969                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
970                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
971            RET_COMPILE=$?
972          cat genmake_tnc.log >> genmake_warnings          cat genmake_tnc.log >> genmake_warnings
973            if test "x$RET_COMPILE" = x0 ; then
974                LIBS="$LIBS -lnetcdf"
975                HAVE_NETCDF=t
976            fi
977      fi      fi
978      rm -f genmake_tnc*      rm -f genmake_tnc*
979  }  }
980    
981    
982    
983    ###############################################################################
984    #   Sequential part of script starts here
985    ###############################################################################
986    
987  #  Set defaults here  #  Set defaults here
988  COMMANDL="$0 $@"  COMMANDL="$0 $@"
989    
# Line 471  PLATFORM= Line 991  PLATFORM=
991  LN=  LN=
992  S64=  S64=
993  KPP=  KPP=
994  FC=  #FC=
995  CPP=  #CC=gcc
996    #CPP=
997  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
998  DEFINES=  DEFINES=
999  PACKAGES=  PACKAGES=
1000  ENABLE=  ENABLE=
1001  DISABLE=  DISABLE=
1002  MAKEFILE=  # MAKEFILE=
1003  MAKEDEPEND=  # MAKEDEPEND=
1004  PDEPEND=  PDEPEND=
1005  DUMPSTATE=t  DUMPSTATE=t
1006  PDEFAULT=  PDEFAULT=
1007  OPTFILE=  OPTFILE=
1008  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1009  FFLAGS=  FFLAGS=
1010  FOPTIM=  FOPTIM=
1011  CFLAGS=  CFLAGS=
1012  KFLAGS1=  KFLAGS1=
1013  KFLAGS2=  KFLAGS2=
1014    #LDADD=
1015  LIBS=  LIBS=
1016  KPPFILES=  KPPFILES=
1017  NOOPTFILES=  NOOPTFILES=
1018  NOOPTFLAGS=  NOOPTFLAGS=
1019    MPI=
1020    MPIPATH=
1021    TS=
1022    PAPIS=
1023    PCLS=
1024    FOOLAD=
1025    PAPI=
1026    PCL=
1027    HPMT=
1028    GSL=
1029    HAVE_TEST_L=
1030    
1031  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1032  HAVE_SYSTEM=  HAVE_SYSTEM=
1033  HAVE_FDATE=  HAVE_FDATE=
1034  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1035  HAVE_CLOC=  HAVE_CLOC=
1036    HAVE_SETRLSTK=
1037    HAVE_STAT=
1038  HAVE_NETCDF=  HAVE_NETCDF=
1039    HAVE_ETIME=
1040    IGNORE_TIME=
1041    
1042  MODS=  MODS=
1043  TOOLSDIR=  TOOLSDIR=
# Line 509  SOURCEDIRS= Line 1045  SOURCEDIRS=
1045  INCLUDEDIRS=  INCLUDEDIRS=
1046  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1047    
1048    G2ARGS=
1049    BASH=
1050  PWD=`pwd`  PWD=`pwd`
1051  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1052  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1053  THISHOSTNAME=`hostname`  EMBED_SRC=
1054    THISHOST=`hostname`
1055  THISCWD=`pwd`  THISCWD=`pwd`
1056  THISDATE=`date`  THISDATE=`date`
1057    THISUSER=`echo $USER`
1058    THISVER=
1059  MACHINE=`uname -a`  MACHINE=`uname -a`
1060  EXECUTABLE=  EXECUTABLE=
1061  EXEHOOK=  EXEHOOK=
# Line 524  IEEE= Line 1065  IEEE=
1065  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1066      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1067  fi  fi
1068    FS=
1069    FS90=
1070    
1071  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1072  AD_OPTFILE=  AD_OPTFILE=
# Line 541  TAMC_EXTRA= Line 1084  TAMC_EXTRA=
1084    
1085  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1086  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1087  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"
1088    
1089  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1090  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
1091  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1092  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1093  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1094  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1095    
1096  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1097  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 577  for i in . $MODS ; do Line 1120  for i in . $MODS ; do
1120          break          break
1121      fi      fi
1122  done  done
1123  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1124  if test -e $gm_local ; then  if test -f $gm_local ; then
1125      echo "using $gm_local"      echo "using $gm_local"
1126      . $gm_local      . $gm_local
1127      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 587  else Line 1130  else
1130      echo "none found"      echo "none found"
1131  fi  fi
1132    
1133  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1134  #OPTIONS=  #OPTIONS=
1135  #n=0  #n=0
1136  #for i ; do  #for i ; do
# Line 599  fi Line 1142  fi
1142  #done  #done
1143  #parse_options  #parse_options
1144  ac_prev=  ac_prev=
1145  for ac_option ; do  for ac_option in "$@" ; do
1146    
1147        G2ARGS="$G2ARGS \"$ac_option\""
1148    
1149      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1150      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 642  for ac_option ; do Line 1187  for ac_option ; do
1187          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1188              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1189                    
1190            -bash | --bash)
1191                ac_prev=BASH ;;
1192            -bash=* | --bash=*)
1193                BASH=$ac_optarg ;;
1194            
1195            -makedepend | --makedepend | -md | --md)
1196                ac_prev=MAKEDEPEND ;;
1197            -makedepend=* | --makedepend=* | -md=* | --md=*)
1198                MAKEDEPEND=$ac_optarg ;;
1199            
1200          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1201              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1202          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 683  for ac_option ; do Line 1238  for ac_option ; do
1238  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1239  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1240  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1241                        
1242            -cc | --cc)
1243                ac_prev=CC ;;
1244            -cc=* | --cc=*)
1245                CC=$ac_optarg ;;
1246            
1247          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1248              ac_prev=FC ;;              ac_prev=FC ;;
1249          -fc=* | --fc=*)          -fc=* | --fc=*)
1250              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1251                    
1252            -fs | --fs)
1253                ac_prev=FS ;;
1254            -fs=* | --fs=*)
1255                FS=$ac_optarg ;;
1256            
1257            -fs90 | --fs90)
1258                ac_prev=FS90 ;;
1259            -fs90=* | --fs90=*)
1260                FS90=$ac_optarg ;;
1261            
1262          -ieee | --ieee)          -ieee | --ieee)
1263              IEEE=true ;;              IEEE=true ;;
1264          -noieee | --noieee)          -noieee | --noieee)
1265              IEEE= ;;              IEEE= ;;
1266    
1267            -ts | --ts)
1268                TS=true ;;
1269            -papis | --papis)
1270                PAPIS=true ;;
1271            -pcls | --pcls)
1272                PCLS=true ;;
1273            -foolad | --foolad)
1274                FOOLAD=true ;;
1275            -papi | --papi)
1276                PAPI=true ;;
1277            -pcl | --pcl)
1278                PCL=true ;;
1279            -hpmt | --hpmt)
1280                HPMT=true ;;
1281    
1282            -gsl | --gsl)
1283                GSL=true ;;
1284    
1285            -mpi | --mpi)
1286                MPI=true ;;
1287            -mpi=* | --mpi=*)
1288                MPIPATH=$ac_optarg
1289                MPI=true ;;
1290                    
1291  #       -jam | --jam)  #       -jam | --jam)
1292  #           JAM=1 ;;  #           JAM=1 ;;
# Line 711  for ac_option ; do Line 1305  for ac_option ; do
1305              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1306          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1307              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1308            
1309            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1310                IGNORE_TIME="-DIGNORE_TIME" ;;
1311    
1312            -es | --es | -embed-source | --embed-source)
1313                EMBED_SRC=t ;;
1314    
1315          -*)          -*)
1316              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 726  for ac_option ; do Line 1326  for ac_option ; do
1326            
1327  done  done
1328    
1329    
1330  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1331      echo      echo
1332      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 738  if test -f ./.genmakerc ; then Line 1339  if test -f ./.genmakerc ; then
1339      echo      echo
1340  fi  fi
1341    
1342    #  Find the MITgcm ${ROOTDIR}
1343  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1344      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1345        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1346          ROOTDIR=".."          ROOTDIR=".."
1347      else      else
1348          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1349              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1350                  ROOTDIR=$d                  ROOTDIR=$d
1351                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1352                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1353                  break                  break
1354              fi              fi
# Line 763  if test ! -d ${ROOTDIR} ; then Line 1366  if test ! -d ${ROOTDIR} ; then
1366      exit 1      exit 1
1367  fi  fi
1368    
1369    #  Find the MITgcm ${THISVER}
1370    if test -f "${ROOTDIR}/doc/tag-index" ; then
1371        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1372    fi
1373    
1374    if test "x$MAKEFILE" = x ; then
1375        MAKEFILE="Makefile"
1376    fi
1377    
1378  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1379  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1380      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 779  if test "x$OPTFILE" != xNONE ; then Line 1391  if test "x$OPTFILE" != xNONE ; then
1391          . "$OPTFILE"          . "$OPTFILE"
1392          RETVAL=$?          RETVAL=$?
1393          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1394              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1395              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1396              exit 1              exit 1
1397          fi          fi
# Line 806  if test "x${AD_OPTFILE}" != xNONE ; then Line 1418  if test "x${AD_OPTFILE}" != xNONE ; then
1418          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1419          RETVAL=$?          RETVAL=$?
1420          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1421              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1422              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1423              exit 1              exit 1
1424          fi          fi
# Line 819  if test "x${AD_OPTFILE}" != xNONE ; then Line 1431  if test "x${AD_OPTFILE}" != xNONE ; then
1431      fi      fi
1432  fi  fi
1433    
1434  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1435    #  Set default values if not set by the optfile
1436    #
1437    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1438  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1439    if test ! "x$BASH" = x ; then
1440        # add a trailing space so that it works within the Makefile syntax (see below)
1441        BASH="$BASH "
1442    fi
1443  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1444      cat <<EOF 1>&2      cat <<EOF 1>&2
1445    
# Line 831  Error: no Fortran compiler: please speci Line 1450  Error: no Fortran compiler: please speci
1450  EOF  EOF
1451      exit 1      exit 1
1452  fi  fi
1453    if test "x$CC" = x ; then
1454        CC=cc
1455    #     cat <<EOF 1>&2
1456    # Error: no C compiler: please specify using one of the following:
1457    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1458    #   2) the "-cc=XXX" command-line option
1459    #   3) the "./genmake_local" file
1460    # EOF
1461    #     exit 1
1462    fi
1463  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1464      LINK=$FC      LINK=$FC
1465  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1466  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1467      MAKE="make"      MAKE="make"
1468  fi  fi
1469    if test "x$CPP" = x ; then
1470        CPP=cpp
1471    fi
1472    #EH3 === UGLY ===
1473    #  The following is an ugly little hack to check for $CPP in /lib/ and
1474    #  it should eventually be replaced with a more general function that
1475    #  searches a combo of the user's path and a list of "usual suspects"
1476    #  to find the correct location for binaries such as $CPP.
1477    for i in " " "/lib/" ; do
1478        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1479    done
1480    #EH3 === UGLY ===
1481  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1482  RETVAL=$?  RETVAL=$?
1483  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 856  EOF Line 1494  EOF
1494  else  else
1495      rm -f test_cpp      rm -f test_cpp
1496  fi  fi
1497  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1498  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1499      LN="ln -s"      LN="ln -s"
1500  fi  fi
# Line 874  Error: The command "ln -s" failed -- ple Line 1510  Error: The command "ln -s" failed -- ple
1510  EOF  EOF
1511      exit 1      exit 1
1512  fi  fi
1513    test -L genmake_tlink > /dev/null 2>&1
1514    RETVAL=$?
1515    if test "x$RETVAL" = x0 ; then
1516        HAVE_TEST_L=t
1517    fi
1518  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1519    
1520    #  Check for broken *.F/*.f handling and fix if possible
1521    check_for_broken_Ff
1522    
1523    if test ! "x$MPI" = x ; then
1524          echo "  Turning on MPI cpp macros"
1525          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1526    fi
1527    
1528    if test ! "x$TS" = x ; then
1529          echo "  Turning on timing per timestep"
1530          if test ! "x$FOOLAD" = x ; then
1531                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1532          else
1533                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1534          fi
1535    fi
1536    if test ! "x$PAPIS" = x ; then
1537          echo "  Turning on PAPI flop summary per timestep"
1538          echo "  Please make sure PAPIINC, PAPILIB are defined"
1539          if test ! "x$FOOLAD" = x ; then
1540                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1541          else
1542                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1543          fi
1544          INCLUDES="$INCLUDES $PAPIINC"
1545          LIBS="$LIBS $PAPILIB"
1546    fi
1547    if test ! "x$PCLS" = x ; then
1548          echo "  Turning on PCL counter summary per timestep"
1549          echo "  Please make sure PCLINC, PCLLIB are defined"
1550          if test ! "x$FOOLAD" = x ; then
1551                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1552          else
1553                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1554          fi
1555          INCLUDES="$INCLUDES $PCLINC"
1556          LIBS="$LIBS $PCLLIB"
1557    fi
1558    if test ! "x$PAPI" = x ; then
1559          if test ! "x$PAPIS" = x ; then
1560              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1561              echo "  Sticking with PAPI flop summary per timestep!"
1562          else
1563              echo "  Turning on performance analysis with PAPI"
1564              echo "  Please make sure PAPIINC, PAPILIB are defined"
1565              DEFINES="$DEFINES -DUSE_PAPI"
1566              INCLUDES="$INCLUDES $PAPIINC"
1567              LIBS="$LIBS $PAPILIB"
1568          fi
1569    fi
1570    if test ! "x$PCL" = x ; then
1571          if test ! "x$PCLS" = x ; then
1572              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1573              echo "  Sticking with PCL flop summary per timestep!"
1574          else
1575              echo "  Turning on performance analysis with PCL"
1576              echo "  Please make sure PCLINC, PCLLIB are defined"
1577              DEFINES="$DEFINES -DUSE_PCL"
1578              INCLUDES="$INCLUDES $PCLINC"
1579              LIBS="$LIBS $PCLLIB"
1580          fi
1581    fi
1582    if test ! "x$HPMT" = x ; then
1583          if test ! "x$PAPI" = x ; then
1584              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1585              echo "  Sticking with PAPI!"
1586          else if test ! "x$PCL" = x ; then
1587              echo "  PCL and the HPM Toolkit cannot co-exist!"
1588              echo "  Sticking with PCL!"
1589          else
1590              echo "  Turning on performance analysis with the HPM Toolkit"
1591              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1592              DEFINES="$DEFINES -DUSE_LIBHPM"
1593              INCLUDES="$INCLUDES $HPMTINC"
1594              LIBS="$LIBS $HPMTLIB"
1595          fi
1596          fi
1597    fi
1598    if test ! "x$GSL" = x ; then
1599          echo "  Turning on use of GSL to control floating point calculations"
1600          echo "  Please make sure GSLINC, GSLLIB are defined"
1601          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1602          INCLUDES="$INCLUDES $GSLINC"
1603          LIBS="$LIBS $GSLLIB"
1604    fi
1605    
1606  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1607  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1608  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1609        program hello        program hello
1610        call system('echo hi')        call system('echo hi')
1611        end        end
1612  EOF  EOF
1613  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1614  RETVAL=$?  RETVAL=$?
1615  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1616      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 896  else Line 1622  else
1622  fi  fi
1623  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1624    
1625  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1626  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1627        program hello        program hello
1628        CHARACTER(128) string        CHARACTER*(128) string
1629        string = ' '        string = ' '
1630        call fdate( string )        call fdate( string )
1631        print *, string        print *, string
1632        end        end
1633  EOF  EOF
1634  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1635  RETVAL=$?  RETVAL=$?
1636  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1637      HAVE_FDATE=t      HAVE_FDATE=t
# Line 917  else Line 1643  else
1643  fi  fi
1644  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1645    
1646  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1647    cat > genmake_tcomp.$FS <<EOF
1648          program hello
1649          REAL*4 ACTUAL, TARRAY(2)
1650          EXTERNAL ETIME
1651          REAL*4 ETIME
1652          actual = etime( tarray )
1653          print *, tarray
1654          end
1655    EOF
1656    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1657    RETVAL=$?
1658    if test "x$RETVAL" = x0 ; then
1659        HAVE_ETIME=t
1660        DEFINES="$DEFINES -DHAVE_ETIME"
1661        echo "yes"
1662    else
1663        HAVE_ETIME=
1664        echo "no"
1665    fi
1666    rm -f genmake_tcomp*
1667    
1668    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1669  check_HAVE_CLOC  check_HAVE_CLOC
1670  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1671      echo "yes"      echo "yes"
1672  else  else
1673      echo "no"      echo "no"
1674        if test "x$EMBED_SRC" = xt ; then
1675            echo "    WARNING: you requested file embedding but it has"
1676            echo "      been disabled since C code cannot be called"
1677            EMBED_SRC=
1678        fi
1679    fi
1680    rm -f genmake_t*
1681    
1682    printf "  Can we unlimit the stack size using $FC...  "
1683    check_HAVE_SETRLSTK
1684    if test "x$HAVE_SETRLSTK" != x ; then
1685        echo "yes"
1686    else
1687        echo "no"
1688    fi
1689    rm -f genmake_t*
1690    
1691    printf "  Can we register a signal handler using $FC...  "
1692    check_HAVE_SIGREG
1693    if test "x$HAVE_SIGREG" != x ; then
1694        echo "yes"
1695    else
1696        echo "no"
1697    fi
1698    rm -f genmake_t*
1699    
1700    printf "  Can we use stat() through C calls...  "
1701    check_HAVE_STAT
1702    if test "x$HAVE_STAT" != x ; then
1703        echo "yes"
1704    else
1705        echo "no"
1706  fi  fi
1707  rm -f genmake_t*  rm -f genmake_t*
1708    
1709  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1710  check_netcdf_libs  check_netcdf_libs
1711  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1712      echo "yes"      echo "yes"
1713  else  else
1714      echo "no"      echo "no"
1715  fi  fi
1716    DEFINES="$DEFINES $IGNORE_TIME"
1717    
1718    if test "x$EMBED_SRC" = xt ; then
1719        build_embed_encode
1720    fi
1721    if test "x$EMBED_SRC" = xt ; then
1722        ENABLE="$ENABLE embed_files"
1723    fi
1724    
1725    
1726  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1727  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1728  for d in $MODS ; do  for d in $MODS ; do
1729      if test ! -d $d ; then      if test ! -d $d ; then
1730          echo          echo
1731          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1732          exit 1          exit 1
1733      else      else
1734          echo -n " $d"          printf " $d"
1735          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1736          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1737      fi      fi
1738  done  done
1739  echo  echo
1740    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1741  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1742      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1743  fi  fi
1744    
1745  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1746      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1747        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1748          EXEDIR=../exe          EXEDIR=../exe
1749      else      else
1750          EXEDIR=.          EXEDIR=.
# Line 973  if test "x${TOOLSDIR}" = x ; then Line 1759  if test "x${TOOLSDIR}" = x ; then
1759      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1760  fi  fi
1761  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1762      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1763      exit 1      exit 1
1764  fi  fi
1765  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1766      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1767        RETVAL=$?
1768        if test "x${RETVAL}" = x0 ; then
1769            S64='$(TOOLSDIR)/set64bitConst.sh'
1770        else
1771            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1772            RETVAL=$?
1773            if test "x${RETVAL}" = x0 ; then
1774                S64='$(TOOLSDIR)/set64bitConst.csh'
1775            else
1776                cat <<EOF
1777    
1778    ERROR: neither of the two default scripts:
1779    
1780        ${TOOLSDIR}/set64bitConst.sh
1781        ${TOOLSDIR}/set64bitConst.csh
1782    
1783      are working so please check paths or specify (with \$S64) a
1784      working version of this script.
1785    
1786    EOF
1787                exit 1
1788            fi
1789        fi
1790  fi  fi
1791  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1792    
# Line 1068  else Line 1877  else
1877          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1878          RETVAL=$?          RETVAL=$?
1879          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1880              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1881              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1882              exit 1              exit 1
1883          fi          fi
# Line 1076  else Line 1885  else
1885              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1886          done          done
1887          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1888          expand_pkg_groups          RET=1
1889            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1890          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1891      fi      fi
1892  fi  fi
1893    
1894  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1895    for i in $PACKAGES ; do
1896        echo $i >> ./.tmp_pack
1897    done
1898    for i in `grep  "-" ./.tmp_pack` ; do
1899        j=`echo $i | sed 's/[-]//'`
1900        DISABLE="$DISABLE $j"
1901    done
1902  pack=  pack=
1903  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1904      addit="t"      addit="t"
# Line 1098  PACKAGES="$pack" Line 1915  PACKAGES="$pack"
1915  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1916  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1917  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1918    # Test if each explicitly referenced package exists
1919  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1920      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1921        if test ! -d "$ROOTDIR/pkg/$j" ; then
1922          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1923          exit 1          exit 1
1924      fi      fi
1925      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1926  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1927  PACKAGES=  PACKAGES=
1928  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1929      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1930  done  done
1931    rm -f ./.tmp_pack
1932  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1933    
1934    #  Check availability of NetCDF and then either build the MNC template
1935    #  files or delete mnc from the list of available packages.
1936    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1937    RETVAL=$?
1938    if test "x$RETVAL" = x0 ; then
1939        if test "x$HAVE_NETCDF" != xt ; then
1940            cat <<EOF
1941    
1942    *********************************************************************
1943    WARNING: the "mnc" package was enabled but tests failed to compile
1944      NetCDF applications.  Please check that:
1945    
1946      1) NetCDF is correctly installed for this compiler and
1947      2) the LIBS variable (within the "optfile") specifies the correct
1948           NetCDF library to link against.
1949    
1950      Due to this failure, the "mnc" package is now DISABLED.
1951    *********************************************************************
1952    
1953    EOF
1954            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1955            DISABLE="$DISABLE mnc"
1956        else
1957            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1958            RETVAL=$?
1959            if test "x${RETVAL}" = x0 ; then
1960                rm -f make_mnc.errors
1961            else
1962                echo "Error: problem encountered while building source files in pkg/mnc:"
1963                cat make_mnc.errors 1>&2
1964                exit 1
1965            fi
1966        fi
1967    fi
1968    
1969  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1970  ck=  ck=
1971  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1177  while test "x$ck" != xtt ; do Line 2030  while test "x$ck" != xtt ; do
2030              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2031              exit 1              exit 1
2032          fi          fi
2033          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2034            #i=$(( $i + 1 ))
2035      done      done
2036      ck=$ck"t"      ck=$ck"t"
2037  done  done
# Line 1196  for i in $PACKAGES ; do Line 2050  for i in $PACKAGES ; do
2050      fi      fi
2051  done  done
2052    
 #  Build MNC templates and check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_mnc.errors  
     else  
         echo "Error: problem encountered while building source files in pkg/mnc:"  
         cat make_mnc.errors 1>&2  
         exit 1  
     fi  
     if test -a "x$HAVE_NETCDF" != xt ; then  
         cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
     fi  
 fi  
   
2053  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2054  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2055  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1242  for n in $names ; do Line 2069  for n in $names ; do
2069              fi              fi
2070          done          done
2071          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2072              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2073              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2074          fi          fi
2075      fi      fi
2076  done  done
2077  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2078  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2079      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2080      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2081  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2082    
# Line 1333  for i in $SOURCEDIRS ; do Line 2160  for i in $SOURCEDIRS ; do
2160          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2161      done      done
2162  done  done
2163    if test ! "x"$FS = "x.f" ; then
2164        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2165        mv -f ad_files_f ad_files
2166    fi
2167    
2168  echo  echo
2169  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2170  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2171  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2172      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2173          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2174      fi      fi
2175  done  done
2176    
2177    if test ! "x$DIVA" = x ; then
2178        echo "  Creating the pseudo-MPI include directory"
2179        INCLUDES="-I./mpi_headers $INCLUDES"
2180        rm -rf ./mpi_headers
2181        mkdir -p ./mpi_headers
2182    
2183        if test "x$MPIINCLUDEDIR" = x ; then
2184            if test "x$MPIHOME" = x ; then
2185                MPIHOME='/usr'
2186            fi
2187            MPIINCLUDEDIR='$MPIHOME/include'
2188        fi
2189        
2190        if test -r $MPIINCLUDEDIR/mpif.h ; then
2191            for i in $MPI_HEADER_FILES; do
2192                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2193            done
2194    
2195            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2196        else
2197            echo " We cannot create a copy of mpif.h!"
2198            exit -1
2199        fi
2200    fi
2201    
2202  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2203  rm -rf .links.tmp  rm -rf .links.tmp
2204  mkdir .links.tmp  mkdir .links.tmp
2205    touch .links.tmp/foo
2206    if test ! -r ".links.tmp/foo" ; then
2207        echo
2208        echo "ERROR : something is wrong with your directory permissions or"
2209        echo "   your user file-creation mask (\"umask\") since creating a"
2210        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2211        echo "   not working.  Please try setting your umask to something"
2212        echo "   sane such as:"
2213        echo
2214        echo "      umask 0002"
2215        echo
2216        echo "   and please verify that you have the proper permissions for"
2217        echo "   creating sub-directories and then reading files created"
2218        echo "   within them."
2219        echo
2220        exit 1
2221    fi
2222    rm -f .links.tmp/foo
2223  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2224  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2225  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2226  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2227  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2228  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2229  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2230  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2231  for d in $alldirs ; do  for d in $alldirs ; do
2232      deplist=      deplist=
# Line 1364  for d in $alldirs ; do Line 2235  for d in $alldirs ; do
2235      for sf in $sfiles ; do      for sf in $sfiles ; do
2236          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2237              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2238                    ignore_f=f
2239                  case $d/$sf in                  case $d/$sf in
2240                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2241                            ignore_f=t
2242                          ;;                          ;;
2243                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2244                            ignore_f=t
2245                          ;;                          ;;
2246                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2247                            ignore_f=t
2248                          ;;                          ;;
2249                    *)                    ./BUILD_INFO.h)
2250                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
                         ;;  
                 esac  
                 extn=`echo $sf | $AWK -F '.' '{print $NF}'`  
                 case $extn in  
                     F)  
                         echo    " \\"  >> srclist.inc  
                         echo -n " $sf" >> srclist.inc  
                         ;;  
                     F90)  
                         echo    " \\"  >> f90srclist.inc  
                         echo -n " $sf" >> f90srclist.inc  
                         ;;  
                     c)  
                         echo    " \\"  >> csrclist.inc  
                         echo -n " $sf" >> csrclist.inc  
2251                          ;;                          ;;
2252                      h)                    ./EMBEDDED_FILES.h)
2253                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         echo -n " $sf" >> hlist.inc  
2254                          ;;                          ;;
2255                      flow)                    *)
2256                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2257                          echo -n " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2258                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2259                                ignore_f=t
2260                            else
2261                                touch .links.tmp/$sf
2262                                deplist="$deplist $sf"
2263                            fi
2264                          ;;                          ;;
2265                  esac                  esac
2266                    if test "x$ignore_f" = xf ; then
2267                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2268                        case $extn in
2269                            F)
2270                                echo    " \\"  >> srclist.inc
2271                                printf " $sf" >> srclist.inc
2272                                ;;
2273                            F90)
2274                                echo    " \\"  >> f90srclist.inc
2275                                printf " $sf" >> f90srclist.inc
2276                                ;;
2277                            c)
2278                                echo    " \\"  >> csrclist.inc
2279                                printf " $sf" >> csrclist.inc
2280                                ;;
2281                            h)
2282                                echo    " \\"  >> hlist.inc
2283                                printf " $sf" >> hlist.inc
2284                                ;;
2285                            flow)
2286                                echo    " \\"  >> ad_flow_files.inc
2287                                printf " $sf" >> ad_flow_files.inc
2288                                ;;
2289                        esac
2290                    fi
2291              fi              fi
2292          fi          fi
2293      done      done
# Line 1416  echo "" >> f90srclist.inc Line 2305  echo "" >> f90srclist.inc
2305  echo "" >> hlist.inc  echo "" >> hlist.inc
2306  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
2307    
2308  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2309      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2310  fi  fi
2311  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1425  echo "#    $MACHINE" >> $MAKEFILE Line 2314  echo "#    $MACHINE" >> $MAKEFILE
2314  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2315  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2316  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2317  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2318  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2319  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2320    
2321  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2322  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1473  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2362  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2362  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2363    
2364  # These files are created by Makefile  # These files are created by Makefile
2365  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2366  EOF  EOF
2367    
2368  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2369        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2370    else
2371        echo "EMBEDDED_FILES = " >>$MAKEFILE
2372    fi
2373    
2374    #  Note: figure out some way to add Hyades JAM libraries here
2375  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2376  # Unix ln (link)  # Unix ln (link)
2377  LN = ${LN}  LN = ${LN}
# Line 1492  KPP = ${KPP} Line 2385  KPP = ${KPP}
2385  FC = ${FC}  FC = ${FC}
2386  # Fortran compiler  # Fortran compiler
2387  F90C = ${F90C}  F90C = ${F90C}
2388    # C compiler
2389    CC = ${CC}
2390  # Link editor  # Link editor
2391  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2392    
2393  # Defines for CPP  # Defines for CPP
2394  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1514  CFLAGS = ${CFLAGS} Line 2409  CFLAGS = ${CFLAGS}
2409  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2410  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2411  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2412  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2413  # Name of the Mekfile  # Name of the Mekfile
2414  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2415    
# Line 1525  cat csrclist.inc      >> $MAKEFILE Line 2420  cat csrclist.inc      >> $MAKEFILE
2420  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2421  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2422  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2423  echo               >> $MAKEFILE  echo >> $MAKEFILE
2424  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2425  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2426  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2427    echo >> $MAKEFILE
2428    echo '.SUFFIXES:' >> $MAKEFILE
2429    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2430  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2431  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2432    
2433  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2434    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2435  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2436  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2437          @echo Creating \$@ ...          @echo Creating \$@ ...
2438          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2439  depend:  depend:
2440          @make links          @make links
2441          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2442          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2443            -rm -f makedepend.out
2444    
2445    lib: libmitgcmuv.a
2446    
2447    libmitgcmuv.a: \$(OBJFILES)
2448            ar rcv libmitgcmuv.a \$(OBJFILES)
2449    
2450  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2451    
# Line 1556  output.txt: \$(EXECUTABLE) Line 2456  output.txt: \$(EXECUTABLE)
2456          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2457    
2458  clean:  clean:
2459          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2460  Clean:  Clean:
2461          @make clean          @make clean
2462          @make cleanlinks          @make cleanlinks
# Line 1567  CLEAN: Line 2467  CLEAN:
2467          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2468          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2469          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2470          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime
2471            -rm -rf mnc_test_*
2472    
2473  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2474  makefile:  makefile:
2475          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2476  cleanlinks:  cleanlinks:
2477          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2478    
2479  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2480  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2481          @echo Creating \$@ ...          @echo Creating \$@ ...
2482          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2483  AD_CONFIG.h:  AD_CONFIG.h:
2484          @echo Creating \$@ ...          @echo Creating \$@ ...
2485          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2486  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2487          @echo Creating \$@ ...          @echo Creating \$@ ...
2488          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2489    
2490  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2491  .F.f:          @echo Creating \$@ ...
2492    EOF
2493    
2494    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2495    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2496    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2497    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2498    
2499    if test "x$EMBED_SRC" = xt ; then
2500        cat >>$MAKEFILE <<EOF
2501    
2502    decode_files.o : EMBEDDED_FILES.h
2503    
2504    ##  \$(F77FILES)
2505    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2506            @echo Creating \$@ ...
2507            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2508            -rm -f all_fF.tar.gz
2509            -gzip all_fF.tar
2510    
2511    EMBEDDED_FILES.h : all_fF.tar.gz
2512            @echo Creating \$@ ...
2513            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2514    
2515    EOF
2516    fi
2517    
2518    cat >>$MAKEFILE <<EOF
2519    
2520    # The normal chain of rules is (  .F - .$FS - .o  )
2521    
2522    ## This nullifies any default implicit rules concerning these two file types:
2523    ## %.o : %.F
2524    
2525    .F.$FS:
2526          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2527  .f.o:  .$FS.o:
2528          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2529  .F90.f90:  .F90.$FS90:
2530          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2531  .f90.o:  .$FS90.o:
2532          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2533  .c.o:  .c.o:
2534          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2535    
2536  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2537  .F.p:  .F.p:
2538          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2539  .p.f:  .p.$FS:
2540          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2541    
2542  #=========================================  #=========================================
# Line 1628  done Line 2563  done
2563    
2564  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2565  echo >> $MAKEFILE  echo >> $MAKEFILE
2566  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2567  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2568  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2569      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2570      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2571  done  done
2572  echo >> $MAKEFILE  echo >> $MAKEFILE
2573  rm -f ad_files  rm -f ad_files
# Line 1641  cat >>$MAKEFILE <<EOF Line 2576  cat >>$MAKEFILE <<EOF
2576    
2577  # ... AD ...  # ... AD ...
2578  adall: ad_taf  adall: ad_taf
2579  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2580  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2581    
2582  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2583          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2584          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2585          -rm -f ad_config.template          -rm -f ad_config.template
2586          @make \$(F77FILES)          @make \$(F77FILES)
2587          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2588          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2589    
2590  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2591          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2592          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2593    
2594  adtafonly:  adtafonly:
2595          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2596          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2597    
2598  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2599          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2600    
2601  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2602          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2603          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2604    
2605  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2606          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2607    
2608    adonlyfwd:
2609            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2610    
2611    adtrick:
2612            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2613    
2614  # ... FTL ...  # ... FTL ...
2615  ftlall: ftl_taf  ftlall: ftl_taf
2616  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2617  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2618    
2619  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2620          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2621          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2622          -rm -f ftl_config.template          -rm -f ftl_config.template
2623          @make \$(F77FILES)          @make \$(F77FILES)
2624          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2625          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2626    
2627  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2628          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2629          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2630    
2631  ftltafonly:  ftltafonly:
2632          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2633          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2634    
2635  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2636          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2637    
2638  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2639          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2640          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2641    
2642  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2643          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2644    
2645    
2646  # ... SVD ...  # ... SVD ...
2647  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2648  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2649            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2650    svdall: svd_touch svd_taf
2651    
2652  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2653          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2654    
2655            @echo "--->>> Only COMPILE svd code! <<<---"
2656            @echo "--->>> Assumes you previously <<<---"
2657            @echo "--->>> did make svdtaf        <<<---"
2658    
2659    svd_touch:
2660            @echo "--->>> Only COMPILE svd code! <<<---"
2661            @echo "--->>> Assumes you previously <<<---"
2662            @echo "--->>> did make svdtaf        <<<---"
2663            touch ad_taf_output.$FS ftl_taf_output.$FS
2664            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2665            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2666            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2667            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2668            -rm -f ftl_config.template
2669    
2670  #=========================================  #=========================================
2671    
# Line 1726  for i in $KPPFILES ; do Line 2682  for i in $KPPFILES ; do
2682      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2683          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2684      fi      fi
2685      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2686  done  done
2687    
2688  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1736  for i in $NOOPTFILES ; do Line 2692  for i in $NOOPTFILES ; do
2692      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2693          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2694      fi      fi
2695      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2696      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2697  done  done
2698    
# Line 1750  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2706  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2706  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2707    
2708  # Create special header files  # Create special header files
2709  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2710  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2711      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2712  else  else
# Line 1764  else Line 2720  else
2720      fi      fi
2721  fi  fi
2722  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2723      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2724  fi  fi
2725    
2726    
2727  #  Write the "state" for future records  #  Write the "state" for future records
2728  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2729      echo -n "" > genmake_state      printf "" > genmake_state
2730      for i in $gm_state ; do      for i in $gm_state ; do
2731          t1="t2=\$$i"          t1="t2=\$$i"
2732          eval $t1          eval $t1

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