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revision 1.60 by edhill, Wed Jan 14 03:44:48 2004 UTC revision 1.224 by jmc, Fri Aug 12 21:03:25 2011 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199  }  }
200    
201  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 206  test_for_string_in_file() {
206      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
207      RETVAL=$?      RETVAL=$?
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
210          grep -i "$strng" $file          grep -i "$strng" $file
211          return 1          exit 99
212      fi      fi
213      return 0      return 0
214  }  }
# Line 48  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 67  expand_pkg_groups() { Line 235  expand_pkg_groups() {
235          done          done
236          PACKAGES=$new_packages          PACKAGES=$new_packages
237          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
238            return $matched
239      else      else
240          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241      fi      fi
242  }  }
243    
244  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246    check_for_broken_Ff()  {
247        #  Do we have defaults for $FS and/or $FS90 ?
248        tfs=f
249        tfs9=f90
250        if test "x$FS" != x ; then
251            tfs="$FS"
252        fi
253        if test "x$FS90" != x ; then
254            tfs9="$FS90"
255        fi
256    
257      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
258      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
259      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
260      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`        write(*,*) 'hi'
261      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        stop
262      PLATFORM=$tmp2        end
263      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  EOF
264      echo "  The platform appears to be:  $PLATFORM"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
       
     echo "test" > test  
     ln -s ./test link  
265      RETVAL=$?      RETVAL=$?
266      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
267          LN="ln -s"          if test "x$FS" = x ; then
268      else              FS='for'
269          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
270          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
271          exit 1          else
272                cat <<EOF 2>&1
273    ERROR: Your file system cannot distinguish between *.F and *.f files
274      (fails the "cp" test) and this program cannot find a suitable
275      replacement extension.  Please try a different build environment or
276      contact the <MITgcm-support@mitgcm.org> list for help.
277    
278    EOF
279                exit -1
280            fi
281            return
282      fi      fi
283      rm -f test link      rm -f genmake_hello.*
284    
285      if test "x$CPP" = x ; then      #  Check the ability of ${MAKE} and ${LN} to use the current set
286          CPP="cpp -traditional -P"      #  of extensions.
287        cat <<EOF >> genmake_hello.F
288          program hello
289          write(*,*) 'hi'
290          stop
291          end
292    EOF
293        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
294        cat <<EOF >> $MAKEFILE
295    .SUFFIXES:
296    .SUFFIXES: .$tfs .F
297    .F.$tfs:
298            $LN \$< \$@
299    EOF
300        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
301        RETVAL=$?
302        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303            if test "x$FS" = x ; then
304                FS='for'
305                FS90='fr9'
306                check_for_broken_Ff
307            else
308                cat <<EOF 2>&1
309    ERROR: Your file system cannot distinguish between *.F and *.f files
310      (fails the "make/ln" test) and this program cannot find a suitable
311      replacement extension.  Please try a different build environment or
312      contact the <MITgcm-support@mitgcm.org> list for help.
313    
314    EOF
315                exit -1
316                return
317            fi
318      fi      fi
319        rm -f genmake_hello.* $MAKEFILE
320        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
321    
322      # makedepend is not always available      #  If we make it here, use the extensions
323        FS=$tfs
324        FS90=$tfs9
325        return
326    }
327    
328    look_for_makedepend()  {
329    
330        #  The "original" makedepend is part of the Imake system that is
331        #  most often distributed with XFree86 or with an XFree86 source
332        #  package.  As a result, many machines (eg. generic Linux) do not
333        #  have a system-default "makedepend" available.  For those
334        #  systems, we have two fall-back options:
335        #
336        #    1) a makedepend implementation shipped with the cyrus-imapd
337        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
338        #
339        #    2) a known-buggy xmakedpend shell script
340        #
341        #  So the choices are, in order:
342        #
343        #    1) use the user-specified program
344        #    2) use a system-wide default
345        #    3) locally build and use the cyrus implementation
346        #    4) fall back to the buggy local xmakedpend script
347        #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370        which makedepend >& /dev/null          which makedepend > /dev/null 2>&1
371        RETVAL=$?          RV0=$?
372        if test "x${RETVAL}" = x1 ; then          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
373           echo "    makedepend was not found. Using xmakedpend instead."          #  echo 'MAKEFILE="'$MAKEFILE'"'
374           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          cat <<EOF >> $MAKEFILE
375        fi  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376    #
377    #   Some "makedepend" implementations will die if they cannot
378    #   find a Makefile -- so this file is here to gives them an
379    #   empty one to find and parse.
380    EOF
381            cat <<EOF >> genmake_tc.f
382          program test
383          write(*,*) 'test'
384          stop
385          end
386    EOF
387            makedepend genmake_tc.f > /dev/null 2>&1
388            RV1=$?
389            test -f $MAKEFILE  &&  rm -f $MAKEFILE
390            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391            if test "x${RV0}${RV1}" = x00 ; then
392                MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394            else
395                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
396                #  Try to build the cyrus implementation
397                build_cyrus_makedepend
398                RETVAL=$?
399                if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403                fi
404            fi
405      fi      fi
406    }
407    
408      # look for possible fortran compilers  build_cyrus_makedepend()  {
409      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
410      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
411        rm -f ./genmake_cy_md
412        (
413            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
414                &&  ./configure > /dev/null 2>&1  \
415                &&  make > /dev/null 2>&1
416            if test -x ./makedepend.exe ; then
417                $LN ./makedepend.exe ./makedepend
418            fi
419            ./makedepend ifparser.c > /dev/null 2>&1  \
420                &&  echo "true"
421        ) > ./genmake_cy_md
422        grep true ./genmake_cy_md > /dev/null 2>&1
423        RETVAL=$?
424        rm -f ./genmake_cy_md
425        if test "x$RETVAL" = x0 ; then
426            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428            return 0
429        else
430            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431            return 1
432        fi
433    }
434    
435    build_embed_encode()
436    {
437        printf "  building the embed-encode utility...  "
438        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
439            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
440                echo
441                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
442                echo
443                EMBED_SRC=f
444                return 1
445            fi
446            clist="cc gcc c89 $CC"
447            for ic in $clist ; do
448                comm="$ic -o encode_files encode_files.c"
449                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450                RETVAL=$?
451                if test "x$RETVAL" = x0 ; then
452                    echo "OK"
453                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
454                    return 0
455                fi
456            done
457            echo
458            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
459            echo "      so it has been disabled"
460            echo
461            EMBED_SRC=f
462            return 1
463        fi
464        echo "OK"
465        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
466    }
467    
468    #  look for possible C compilers
469    look_for_C_compilers() {
470        echo >> $LOGFILE
471        echo "running: look_for_C_compilers()" >> $LOGFILE
472        rm -f ./genmake_hello.c  ./genmake_hello
473        cat >> genmake_hello.c << EOF
474    #include <stdio.h>
475    int main(int argc, char **argv) {
476      printf("Hello!\n");
477      return 0;
478    }
479    EOF
480        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
481        p_CC=
482      for c in $tmp ; do      for c in $tmp ; do
483          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
484          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
485            $COMM >> $LOGFILE 2>&1
486            RETVAL=$?
487            if test "x${RETVAL}" = x0 ; then
488                echo " $c test successful" >> $LOGFILE
489                p_CC="$p_CC $c"
490            fi
491        done
492        rm -f ./genmake_hello.c ./genmake_hello
493        if test "x${p_CC}" = x ; then
494            cat 1>&2 <<EOF
495    
496    Error: No C compilers were found in your path.  Please specify one using:
497    
498        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
499        2) the CC or MITGCM_CC environment variables.
500    
501    EOF
502            exit 1
503        else
504            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
505            if test "x$CC" = x ; then
506                CC=`echo $p_CC | $AWK '{print $1}'`
507                echo "  Setting C compiler to: "$CC
508            fi
509        fi
510        echo " --> set CC='$CC'" >> $LOGFILE
511    }
512    
513    # Guess possible config options for this host
514    find_possible_optfile()  {
515    
516        echo >> $LOGFILE
517        echo "running: find_possible_optfile()" >> $LOGFILE
518        tmp1=`uname`"_"`uname -m`
519        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
520        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
521        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
522        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
523        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
524        PLATFORM=$tmp3
525        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
526        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
527        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
528    
529        #================================================================
530        #  look for possible FORTRAN compilers
531        echo "  look for possible FORTRAN compilers" >> $LOGFILE
532        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
533        p_FC=
534        rm -f ./genmake_hello.f
535        cat >> genmake_hello.f <<EOF
536        program hello        program hello
537        do i=1,3        do i=1,3
538          print *, 'hello world : ', i          print *, 'hello world : ', i
539        enddo        enddo
540        end        end
541  EOF  EOF
542          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
543            COMM="$f -o genmake_hello genmake_hello.f"
544            echo $COMM >> $LOGFILE
545            $COMM >> $LOGFILE 2>&1
546          RETVAL=$?          RETVAL=$?
547          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
548              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
549                p_FC="$p_FC $f"
550          fi          fi
551      done      done
552      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
553      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
554          cat 1>&2 <<EOF          cat 1>&2 <<EOF
555    
# Line 136  Error: No Fortran compilers were found i Line 557  Error: No Fortran compilers were found i
557    
558      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
559      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
560      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
561    
562  EOF  EOF
563          exit 1          exit 1
564      else      else
565          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
566          echo "   "$p_FC      fi
567          if test "x$FC" = x ; then  
568              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
569          fi      #  that has a correctly-named optfile
570        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
571            for i in $p_FC ; do
572                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
573                if test -r $OPTFILE ; then
574                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
575                    break
576                fi
577            done
578        fi
579    
580        if test "x$OPTFILE" = x ; then
581            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
582            if test ! -r $OPTFILE ; then
583                 echo "  I looked for the file "$OPTFILE" but did not find it"
584            fi
585      fi      fi
586    
     for i in $p_FC ; do  
         p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
         if test -r $p_OF ; then  
             OPTFILE=$p_OF  
             echo "  The options file:  $p_OF"  
             echo "    appears to match so we'll use it."  
             break  
         fi  
     done  
587      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
588          cat 1>&2 <<EOF          cat 1>&2 <<EOF
589    
# Line 172  Error: No options file was found in:  $R Line 599  Error: No options file was found in:  $R
599  EOF  EOF
600          exit 1          exit 1
601      fi      fi
602        
603  #     # look for possible MPI libraries  #     # look for possible MPI libraries
604  #     mpi_libs=  #     mpi_libs=
605  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 191  EOF Line 618  EOF
618  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
619  #           a=`cat out`  #           a=`cat out`
620  #           for i in $a ; do  #           for i in $a ; do
621  #               case $i in  #               case $i in
622  #                   -*)  #                   -*)
623  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
624  #               esac  #               esac
# Line 201  EOF Line 628  EOF
628  #       fi  #       fi
629  #       rm -f test.f out  #       rm -f test.f out
630  #     fi  #     fi
   
631  }  }
632    
633  #  Parse the package dependency information  #  Parse the package dependency information
# Line 210  get_pdepend_list()  { Line 636  get_pdepend_list()  {
636      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
637      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
638      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
639          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
640          > ./.pd_tmp          > ./.pd_tmp
641        RETVAL=$?
642        if test ! "x${RETVAL}" = x0 ; then
643          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
644          exit 1
645        fi
646      . ./.pd_tmp      . ./.pd_tmp
647      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
648  }  }
649    
650  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
651  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
652    
653        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
654        if test ! "x$FC_NAMEMANGLE" = x ; then
655            return 0
656        fi
657        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
658    
659      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
660        
661      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
662  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
663  EOF  EOF
664      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
665        echo ' '$COMM >> $LOGFILE
666        $COMM >> $LOGFILE 2>&1
667      RETVAL=$?      RETVAL=$?
668      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
669          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
670          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
671    
672  WARNING: C test compile fails   WARNING: C test compile fails
673  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675  EOF  EOF
676          return 1          return 1
677      fi      fi
678      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
679      RETVAL=$?      RETVAL=$?
680      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
681          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
682          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
683    
684  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
685  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687  EOF  EOF
688          return 1          return 1
689      fi      fi
690      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
691        subroutine tcall( string )        subroutine tcall( string )
692        character*(*) string        character*(*) string
693        call tsub( string )        call tsub( string )
694        end        end
695  EOF  EOF
696      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
697        echo ' '$COMM >> $LOGFILE
698        $COMM >> $LOGFILE 2>&1
699      RETVAL=$?      RETVAL=$?
700      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
701          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
702          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
703    
704  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
705  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
706  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
707  EOF  EOF
708          return 1          return 1
709      fi      fi
710      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
711      RETVAL=$?      RETVAL=$?
712      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
713          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
714          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
715    
716  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
717  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
718  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
719  EOF  EOF
720          return 1          return 1
721      fi      fi
# Line 395  EOF Line 741  EOF
741    
742      #  cleanup the testing files      #  cleanup the testing files
743      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
744    
745        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
746    }
747    
748  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
749        echo >> $LOGFILE
750        echo "running: check_HAVE_CLOC()" >> $LOGFILE
751      get_fortran_c_namemangling      get_fortran_c_namemangling
752      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
753  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 764  void FC_NAMEMANGLE(cloc) ( double *curti
764   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
765  }  }
766  EOF  EOF
767      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
768        echo $COMM >> $LOGFILE
769        $COMM >> $LOGFILE 2>&1
770      RET_C=$?      RET_C=$?
771      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
772        program hello        program hello
773        Real*8 wtime        REAL*8 wtime
774        external cloc        external cloc
775        call cloc(wtime)        call cloc(wtime)
776        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
777        end program hello        end
778  EOF  EOF
779      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
780        echo $COMM >> $LOGFILE
781        $COMM >> $LOGFILE 2>&1
782      RET_F=$?      RET_F=$?
783      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
784      RETVAL=$?      RETVAL=$?
785      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
786          HAVE_CLOC=t          HAVE_CLOC=t
787          DEFINES="$DEFINES -DHAVE_CLOC"          DEFINES="$DEFINES -DHAVE_CLOC"
788      fi      fi
789      rm -f genmake_tc*      rm -f genmake_tc*
790        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
791    }
792    
793    check_HAVE_SIGREG()  {
794        if test ! "x$HAVE_SIGREG" = x ; then
795            return
796        fi
797        echo >> $LOGFILE
798        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
799        get_fortran_c_namemangling
800        cat <<EOF > genmake_tc_1.c
801    $FC_NAMEMANGLE
802    #include <stdlib.h>
803    #include <stdio.h>
804    #include <signal.h>
805    #include <errno.h>
806    #include <ucontext.h>
807    
808    int * ip;
809    
810    static void killhandler(
811        unsigned int sn, siginfo_t  si, struct ucontext *sc )
812    {
813        *ip = *ip + 1;
814        return;
815    }
816    
817    void FC_NAMEMANGLE(sigreg) (int * aip)
818    {
819        struct sigaction s;
820        ip = aip;
821        s.sa_flags = SA_SIGINFO;
822        s.sa_sigaction = (void *)killhandler;
823        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
824            printf("Sigaction returned error = %d\n", errno);
825            exit(0);
826        }
827        return;
828    }
829    EOF
830        COMM="$CC $CFLAGS -c genmake_tc_1.c"
831        echo $COMM >> $LOGFILE
832        $COMM >> $LOGFILE 2>&1
833        RET_C=$?
834        cat <<EOF > genmake_tc_2.$FS
835          program hello
836          integer anint
837          common /iv/ anint
838          external sigreg
839          call sigreg(anint)
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846        RETVAL=$?
847        if test "x$RETVAL" = x0 ; then
848            HAVE_SIGREG=t
849            DEFINES="$DEFINES -DHAVE_SIGREG"
850        fi
851        rm -f genmake_tc*
852        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
853    }
854    
855    check_HAVE_SETRLSTK()  {
856        if test "x$HAVE_SETRLSTK" = xt ; then
857            DEFINES="$DEFINES -DHAVE_SETRLSTK"
858            return
859        fi  
860        if test ! "x$HAVE_SETRLSTK" = x ; then
861            return
862        fi
863        echo >> $LOGFILE
864        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
865        get_fortran_c_namemangling
866        cat <<EOF > genmake_tc_1.c
867    $FC_NAMEMANGLE
868    #include <sys/time.h>
869    #include <sys/resource.h>
870    #include <unistd.h>
871    void FC_NAMEMANGLE(setrlstk) ()
872    {
873        struct rlimit rls;
874        rls.rlim_cur = RLIM_INFINITY;
875        rls.rlim_max = RLIM_INFINITY;
876        setrlimit(RLIMIT_STACK, &rls);
877        return;
878    }
879    EOF
880        COMM="$CC $CFLAGS -c genmake_tc_1.c"
881        echo $COMM >> $LOGFILE
882        $COMM >> $LOGFILE 2>&1
883        RET_C=$?
884        cat <<EOF > genmake_tc_2.$FS
885          program hello
886          external setrlstk
887          call setrlstk()
888          end
889    EOF
890        cat genmake_tc_2.$FS >> $LOGFILE
891        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
892        echo $COMM >> $LOGFILE
893        $COMM >> $LOGFILE 2>&1
894        RETVAL=$?
895        if test "x$RETVAL" = x0 ; then
896            HAVE_SETRLSTK=t
897            DEFINES="$DEFINES -DHAVE_SETRLSTK"
898        fi
899        rm -f genmake_tc*
900        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
901  }  }
902    
903    check_HAVE_STAT()  {
904        echo >> $LOGFILE
905        echo "running: check_HAVE_STAT()" >> $LOGFILE
906        get_fortran_c_namemangling
907        cat <<EOF > genmake_tc_1.c
908    $FC_NAMEMANGLE
909    #include <stdio.h>
910    #include <stdlib.h>
911    #include <unistd.h>
912    #include <sys/stat.h>
913    #include <sys/types.h>
914    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
915    {
916        char name[512];
917        struct stat astat;
918    
919        name[0] = 'a'; name[1] = '\0';
920        if (! stat(name, &astat))
921            *nbyte = (int)(astat.st_size);
922        else
923            *nbyte = -1;
924    }
925    EOF
926        COMM="$CC $CFLAGS -c genmake_tc_1.c"
927        echo $COMM >> $LOGFILE
928        $COMM >> genmake_tc.log 2>&1
929        RET_C=$?
930        cat <<EOF > genmake_tc_2.$FS
931          program hello
932          integer nbyte
933          call tfsize(nbyte)
934          print *," HELLO WORLD", nbyte
935          end
936    EOF
937        cat genmake_tc_2.$FS >> $LOGFILE
938        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
939        echo $COMM >> $LOGFILE
940        $COMM >> genmake_tc.log 2>&1
941        RETVAL=$?
942        if test "x$RETVAL" = x0 ; then
943            HAVE_STAT=t
944            DEFINES="$DEFINES -DHAVE_STAT"
945        fi
946        rm -f genmake_tc*
947        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
948    }
949    
950  check_netcdf_libs()  {  check_netcdf_libs()  {
951        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
952            return
953        fi
954        echo >> $LOGFILE
955        echo "running: check_netcdf_libs()" >> $LOGFILE
956      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
957        program fgennc        program fgennc
958  #include "netcdf.inc"  #include "netcdf.inc"
959    EOF
960        if test ! "x$MPI" = x ; then
961            echo '#include "mpif.h"' >> genmake_tnc.F
962        fi
963        cat <<EOF >> genmake_tnc.F
964        integer iret, ncid, xid        integer iret, ncid, xid
965        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
966        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 450  check_netcdf_libs()  { Line 970  check_netcdf_libs()  {
970        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
971        end        end
972  EOF  EOF
973      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
974          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
975        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
976        RET_CPP=f
977        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
978        echo "$COMM" >> genmake_tnc.log
979        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
980        if test "x$RET_CPP" = xf ; then
981            echo "  WARNING: CPP failed to pre-process the netcdf test." \
982                >> genmake_tnc.log
983            echo "    Please check that \$INCLUDES is properly set." \
984                >> genmake_tnc.log
985        fi
986        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
987        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
988        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
989            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
990      RET_COMPILE=$?      RET_COMPILE=$?
991      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> $LOGFILE
992      RETVAL=$?  
993      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
994        #EH3  execution or cannot support it (eg. cross-compilers)
995        #EH3
996        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
997        #EH3 RETVAL=$?
998        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
999    
1000        if test "x$RET_COMPILE" = x0 ; then
1001          HAVE_NETCDF=t          HAVE_NETCDF=t
1002            echo "check_netcdf: successful" >> $LOGFILE
1003      else      else
1004          cat genmake_tnc.log >> genmake_warnings          # try again with "-lnetcdf" added to the libs
1005            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1006            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1012            RET_COMPILE=$?
1013            echo >> $LOGFILE
1014            cat genmake_tnc.log >> $LOGFILE
1015            if test "x$RET_COMPILE" = x0 ; then
1016                LIBS="$LIBS -lnetcdf"
1017                HAVE_NETCDF=t
1018                echo "check_netcdf: successful" >> $LOGFILE
1019            else
1020            # try again with "-lnetcdff" added to the libs
1021                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1022                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1023                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1024                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1025                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1026                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1027                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1028                RET_COMPILE=$?
1029                echo >> $LOGFILE
1030                cat genmake_tnc.log >> $LOGFILE
1031                if test "x$RET_COMPILE" = x0 ; then
1032                    LIBS="$LIBS -lnetcdff -lnetcdf"
1033                    HAVE_NETCDF=t
1034                    echo "check_netcdf: successful" >> $LOGFILE
1035                fi
1036            fi
1037      fi      fi
1038      rm -f genmake_tnc*      rm -f genmake_tnc*
1039        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1040  }  }
1041    
1042    
1043    ###############################################################################
1044    #   Sequential part of script starts here
1045    ###############################################################################
1046    
1047  #  Set defaults here  #  Set defaults here
1048  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1049    
# Line 471  PLATFORM= Line 1051  PLATFORM=
1051  LN=  LN=
1052  S64=  S64=
1053  KPP=  KPP=
1054  FC=  #FC=
1055  CPP=  #CC=gcc
1056    #CPP=
1057  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1058  DEFINES=  DEFINES=
1059  PACKAGES=  PACKAGES=
1060  ENABLE=  ENABLE=
1061  DISABLE=  DISABLE=
1062  MAKEFILE=  # MAKEFILE=
1063  MAKEDEPEND=  # MAKEDEPEND=
1064  PDEPEND=  PKG_DEPEND=
1065  DUMPSTATE=t  PKG_GROUPS=
1066  PDEFAULT=  DUMPSTATE=f
1067  OPTFILE=  OPTFILE=
1068  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1069  FFLAGS=  FFLAGS=
1070  FOPTIM=  FOPTIM=
1071    FEXTRAFLAGS=
1072    USE_EXTENDED_SRC=
1073    EXTENDED_SRC_FLAG=
1074    GET_FC_VERSION=
1075  CFLAGS=  CFLAGS=
1076  KFLAGS1=  KFLAGS1=
1077  KFLAGS2=  KFLAGS2=
1078    #LDADD=
1079  LIBS=  LIBS=
1080  KPPFILES=  KPPFILES=
1081  NOOPTFILES=  NOOPTFILES=
1082  NOOPTFLAGS=  NOOPTFLAGS=
1083    MPI=
1084    MPIPATH=
1085    OMP=
1086    OMPFLAG=
1087    USE_R4=
1088    TS=
1089    PAPIS=
1090    PCLS=
1091    FOOLAD=
1092    PAPI=
1093    PCL=
1094    HPMT=
1095    GSL=
1096    DEVEL=
1097    HAVE_TEST_L=
1098    
1099  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1100  HAVE_SYSTEM=  HAVE_SYSTEM=
1101  HAVE_FDATE=  HAVE_FDATE=
1102  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1103  HAVE_CLOC=  HAVE_CLOC=
1104    # HAVE_SETRLSTK=
1105    HAVE_STAT=
1106  HAVE_NETCDF=  HAVE_NETCDF=
1107    HAVE_ETIME=
1108    IGNORE_TIME=
1109    
1110  MODS=  MODS=
1111  TOOLSDIR=  TOOLSDIR=
# Line 509  SOURCEDIRS= Line 1113  SOURCEDIRS=
1113  INCLUDEDIRS=  INCLUDEDIRS=
1114  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1115    
1116    G2ARGS=
1117    BASH=
1118  PWD=`pwd`  PWD=`pwd`
1119  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1120  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1121  THISHOSTNAME=`hostname`  EMBED_SRC=
1122    THISHOST=`hostname`
1123  THISCWD=`pwd`  THISCWD=`pwd`
1124  THISDATE=`date`  THISDATE=`date`
1125    THISUSER=`echo $USER`
1126    THISVER=
1127  MACHINE=`uname -a`  MACHINE=`uname -a`
1128  EXECUTABLE=  EXECUTABLE=
1129  EXEHOOK=  EXEHOOK=
1130  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1131  IEEE=  IEEE=
1132  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1133      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1134  fi  fi
1135    FS=
1136    FS90=
1137    
1138  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1139  AD_OPTFILE=  AD_OPTFILE=
# Line 538  FTL_TAF_FLAGS= Line 1148  FTL_TAF_FLAGS=
1148  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1149  TAMC_EXTRA=  TAMC_EXTRA=
1150    
   
1151  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1152  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1153  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1154    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1155    
1156  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1157  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1158  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1159  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1160  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1161  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1162    
1163  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1164  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1165  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1166  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1167    
1168  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1169  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1170    
1171  cat <<EOF  cat <<EOF
1172    
1173  GENMAKE :  GENMAKE :
1174    
1175  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1176  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1177    or for more detail see the Developer's HOWTO manual at:
1178    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1179    
1180  EOF  EOF
1181    
1182    LOGFILE="genmake.log"
1183    #- clean-up previous genmake logfiles:
1184    rm -f genmake_state genmake_*optfile $LOGFILE
1185    
1186  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1187  gm_local="genmake_local"  gm_local="genmake_local"
1188  for i in . $MODS ; do  printf "  getting local config information:  "
1189      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1190      echo "using $gm_local"      echo "using $gm_local"
1191      . $gm_local      . $gm_local
1192      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 587  else Line 1195  else
1195      echo "none found"      echo "none found"
1196  fi  fi
1197    
1198  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1199  #parse_options  #parse_options
1200  ac_prev=  ac_prev=
1201  for ac_option ; do  for ac_option in "$@" ; do
1202    
1203        G2ARGS="$G2ARGS \"$ac_option\""
1204    
1205      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1206      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 607  for ac_option ; do Line 1208  for ac_option ; do
1208          ac_prev=          ac_prev=
1209          continue          continue
1210      fi      fi
1211        
1212      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1213        
1214      case $ac_option in      case $ac_option in
1215                    
1216          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 628  for ac_option ; do Line 1229  for ac_option ; do
1229              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1230                    
1231          -pdepend | --pdepend)          -pdepend | --pdepend)
1232              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1233          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1234              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1235                    
1236          -pdefault | --pdefault)          -pgroups | --pgroups)
1237              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1238          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1239              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1240                    
1241          -make | --make | -m | --m)          -make | --make | -m | --m)
1242              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1243          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1244              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1245                    
1246            -bash | --bash)
1247                ac_prev=BASH ;;
1248            -bash=* | --bash=*)
1249                BASH=$ac_optarg ;;
1250            
1251            -makedepend | --makedepend | -md | --md)
1252                ac_prev=MAKEDEPEND ;;
1253            -makedepend=* | --makedepend=* | -md=* | --md=*)
1254                MAKEDEPEND=$ac_optarg ;;
1255            
1256          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1257              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1258          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 683  for ac_option ; do Line 1294  for ac_option ; do
1294  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1295  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1296  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1297                        
1298            -cc | --cc)
1299                ac_prev=CC ;;
1300            -cc=* | --cc=*)
1301                CC=$ac_optarg ;;
1302            
1303          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1304              ac_prev=FC ;;              ac_prev=FC ;;
1305          -fc=* | --fc=*)          -fc=* | --fc=*)
1306              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1307                    
1308            -fs | --fs)
1309                ac_prev=FS ;;
1310            -fs=* | --fs=*)
1311                FS=$ac_optarg ;;
1312            
1313            -fs90 | --fs90)
1314                ac_prev=FS90 ;;
1315            -fs90=* | --fs90=*)
1316                FS90=$ac_optarg ;;
1317            
1318            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1319                USE_R4=true ;;
1320    
1321          -ieee | --ieee)          -ieee | --ieee)
1322              IEEE=true ;;              IEEE=true ;;
1323          -noieee | --noieee)          -noieee | --noieee)
1324              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1325            -devel | --devel)
1326                IEEE=true ; DEVEL=true ;;
1327            -gsl | --gsl)
1328                GSL=true ;;
1329    
1330            -ts | --ts)
1331                TS=true ;;
1332            -papis | --papis)
1333                PAPIS=true ;;
1334            -pcls | --pcls)
1335                PCLS=true ;;
1336            -foolad | --foolad)
1337                FOOLAD=true ;;
1338            -papi | --papi)
1339                PAPI=true ;;
1340            -pcl | --pcl)
1341                PCL=true ;;
1342            -hpmt | --hpmt)
1343                HPMT=true ;;
1344    
1345            -mpi | --mpi)
1346                MPI=true ;;
1347            -mpi=* | --mpi=*)
1348                MPIPATH=$ac_optarg
1349                MPI=true ;;
1350                    
1351  #       -jam | --jam)          -omp | --omp)
1352  #           JAM=1 ;;              OMP=true ;;
1353  #       -nojam | --nojam)          -omp=* | --omp=*)
1354  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1355                OMP=true ;;
1356                    
1357          -ds | --ds)          -ds | --ds)
1358              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1359                    
1360            -extra_flag | --extra_flag)
1361                ac_prev=FEXTRAFLAGS ;;
1362            -extra_flag=* | --extra_flag=*)
1363                FEXTRAFLAGS=$ac_optarg ;;
1364            
1365          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1366              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1367          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 711  for ac_option ; do Line 1371  for ac_option ; do
1371              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1372          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1373              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1374            
1375            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1376                IGNORE_TIME="-DIGNORE_TIME" ;;
1377    
1378            -es | --es | -embed-source | --embed-source)
1379                EMBED_SRC=t ;;
1380    
1381          -*)          -*)
1382              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 723  for ac_option ; do Line 1389  for ac_option ; do
1389              ;;              ;;
1390                    
1391      esac      esac
1392        
1393  done  done
1394    
1395  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1396      echo      echo
1397      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1398      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1399      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1400      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1401        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1402        echo "WARNING: ignore \"./.genmakerc\" and continue."
1403      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1404  fi  fi
1405    
1406    #  Find the MITgcm ${ROOTDIR}
1407  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1408      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1409        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1410          ROOTDIR=".."          ROOTDIR=".."
1411      else      else
1412          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1413              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1414                  ROOTDIR=$d                  ROOTDIR=$d
1415                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1416                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1417                  break                  break
1418              fi              fi
1419          done          done
# Line 763  if test ! -d ${ROOTDIR} ; then Line 1430  if test ! -d ${ROOTDIR} ; then
1430      exit 1      exit 1
1431  fi  fi
1432    
1433  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1434    version_file="${ROOTDIR}/doc/tag-index"
1435    if test -f $version_file ; then
1436        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1437    #-  remove ./BUILD_INFO.h file if older than version_file
1438        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1439            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1440            rm -f ./BUILD_INFO.h
1441        fi
1442    fi
1443    
1444    if test "x$MAKEFILE" = x ; then
1445        MAKEFILE="Makefile"
1446    fi
1447    
1448    echo "  getting OPTFILE information:"
1449  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1450      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1451          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1452          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1453          find_possible_configs          find_possible_optfile
1454      else      else
1455          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1456      fi      fi
# Line 779  if test "x$OPTFILE" != xNONE ; then Line 1461  if test "x$OPTFILE" != xNONE ; then
1461          . "$OPTFILE"          . "$OPTFILE"
1462          RETVAL=$?          RETVAL=$?
1463          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1464              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1465              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1466              exit 1              exit 1
1467          fi          fi
1468          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1469              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1470          fi          fi
1471      else      else
# Line 792  if test "x$OPTFILE" != xNONE ; then Line 1474  if test "x$OPTFILE" != xNONE ; then
1474      fi      fi
1475  fi  fi
1476    
1477  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1478  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1479      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1480          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 806  if test "x${AD_OPTFILE}" != xNONE ; then Line 1488  if test "x${AD_OPTFILE}" != xNONE ; then
1488          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1489          RETVAL=$?          RETVAL=$?
1490          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1491              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1492              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1493              exit 1              exit 1
1494          fi          fi
1495          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1496              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1497          fi          fi
1498      else      else
# Line 819  if test "x${AD_OPTFILE}" != xNONE ; then Line 1501  if test "x${AD_OPTFILE}" != xNONE ; then
1501      fi      fi
1502  fi  fi
1503    
1504  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1505    #  Set default values if not set by the optfile
1506    #
1507    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1508  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1509    if test ! "x$BASH" = x ; then
1510        # add a trailing space so that it works within the Makefile syntax (see below)
1511        BASH="$BASH "
1512    fi
1513  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1514      cat <<EOF 1>&2      cat <<EOF 1>&2
1515    
# Line 831  Error: no Fortran compiler: please speci Line 1520  Error: no Fortran compiler: please speci
1520  EOF  EOF
1521      exit 1      exit 1
1522  fi  fi
1523    if test "x$GET_FC_VERSION" != x ; then
1524      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1525      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1526      if test -s genmake_fc_vers1 ; then
1527        cat genmake_fc_vers1 >> $LOGFILE
1528      else
1529        cat genmake_fc_vers2 >> $LOGFILE
1530      fi
1531      echo "<-- compiler version ----" >> $LOGFILE
1532      rm -f genmake_fc_vers1 genmake_fc_vers2
1533    fi
1534    
1535    if test "x$CC" = x ; then
1536        look_for_C_compilers
1537    fi
1538    
1539  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1540      LINK=$FC      LINK=$FC
1541  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1542  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1543      MAKE="make"      MAKE="make"
1544  fi  fi
1545    if test "x$CPP" = x ; then
1546        CPP="cpp -traditional -P"
1547    fi
1548    #EH3 === UGLY ===
1549    #  The following is an ugly little hack to check for $CPP in /lib/ and
1550    #  it should eventually be replaced with a more general function that
1551    #  searches a combo of the user's path and a list of "usual suspects"
1552    #  to find the correct location for binaries such as $CPP.
1553    for i in " " "/lib/" ; do
1554        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1555    done
1556    #EH3 === UGLY ===
1557  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1558  RETVAL=$?  RETVAL=$?
1559  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 856  EOF Line 1570  EOF
1570  else  else
1571      rm -f test_cpp      rm -f test_cpp
1572  fi  fi
1573  if test "x$MAKEDEPEND" = x ; then  
1574      MAKEDEPEND=makedepend  look_for_makedepend
1575  fi  
1576    #  Check that soft-link command is set and usable
1577  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1578      LN="ln -s"      LN="ln -s"
1579  fi  fi
# Line 868  RETVAL=$? Line 1583  RETVAL=$?
1583  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1584      cat <<EOF 1>&2      cat <<EOF 1>&2
1585    
1586  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1587    command in the optfile.    command in the optfile.
1588    
1589  EOF  EOF
1590      exit 1      exit 1
1591  fi  fi
1592    test -L genmake_tlink > /dev/null 2>&1
1593    RETVAL=$?
1594    if test "x$RETVAL" = x0 ; then
1595        HAVE_TEST_L=t
1596    fi
1597  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1598    
1599    #  Check for broken *.F/*.f handling and fix if possible
1600    check_for_broken_Ff
1601    
1602    if test ! "x$MPI" = x ; then
1603          echo "  Turning on MPI cpp macros"
1604          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1605    fi
1606    if test ! "x$OMP" = x ; then
1607          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1608          FFLAGS="$FFLAGS $OMPFLAG"
1609          F90FLAGS="$F90FLAGS $OMPFLAG"
1610          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1611    fi
1612    
1613    if test ! "x$USE_R4" = x ; then
1614          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1615          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1616    fi
1617    
1618    if test ! "x$TS" = x ; then
1619          echo "  Turning on timing per timestep"
1620          if test ! "x$FOOLAD" = x ; then
1621                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1622          else
1623                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1624          fi
1625          PACKAGES="$PACKAGES showflops"
1626    fi
1627    if test ! "x$PAPIS" = x ; then
1628          echo "  Turning on PAPI flop summary per timestep"
1629          echo "  Please make sure PAPIINC, PAPILIB are defined"
1630          if test ! "x$FOOLAD" = x ; then
1631                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1632          else
1633                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1634          fi
1635          INCLUDES="$INCLUDES $PAPIINC"
1636          LIBS="$LIBS $PAPILIB"
1637          PACKAGES="$PACKAGES showflops"
1638    fi
1639    if test ! "x$PCLS" = x ; then
1640          echo "  Turning on PCL counter summary per timestep"
1641          echo "  Please make sure PCLINC, PCLLIB are defined"
1642          if test ! "x$FOOLAD" = x ; then
1643                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1644          else
1645                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1646          fi
1647          INCLUDES="$INCLUDES $PCLINC"
1648          LIBS="$LIBS $PCLLIB"
1649          PACKAGES="$PACKAGES showflops"
1650    fi
1651    if test ! "x$PAPI" = x ; then
1652          if test ! "x$PAPIS" = x ; then
1653              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1654              echo "  Sticking with PAPI flop summary per timestep!"
1655          else
1656              echo "  Turning on performance analysis with PAPI"
1657              echo "  Please make sure PAPIINC, PAPILIB are defined"
1658              DEFINES="$DEFINES -DUSE_PAPI"
1659              INCLUDES="$INCLUDES $PAPIINC"
1660              LIBS="$LIBS $PAPILIB"
1661          fi
1662    fi
1663    if test ! "x$PCL" = x ; then
1664          if test ! "x$PCLS" = x ; then
1665              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1666              echo "  Sticking with PCL flop summary per timestep!"
1667          else
1668              echo "  Turning on performance analysis with PCL"
1669              echo "  Please make sure PCLINC, PCLLIB are defined"
1670              DEFINES="$DEFINES -DUSE_PCL"
1671              INCLUDES="$INCLUDES $PCLINC"
1672              LIBS="$LIBS $PCLLIB"
1673          fi
1674    fi
1675    if test ! "x$HPMT" = x ; then
1676          if test ! "x$PAPI" = x ; then
1677              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1678              echo "  Sticking with PAPI!"
1679          else if test ! "x$PCL" = x ; then
1680              echo "  PCL and the HPM Toolkit cannot co-exist!"
1681              echo "  Sticking with PCL!"
1682          else
1683              echo "  Turning on performance analysis with the HPM Toolkit"
1684              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1685              DEFINES="$DEFINES -DUSE_LIBHPM"
1686              INCLUDES="$INCLUDES $HPMTINC"
1687              LIBS="$LIBS $HPMTLIB"
1688          fi
1689          fi
1690    fi
1691    if test ! "x$GSL" = x ; then
1692          echo "  Turning on use of GSL to control floating point calculations"
1693          echo "  Please make sure GSLINC, GSLLIB are defined"
1694          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1695          INCLUDES="$INCLUDES $GSLINC"
1696          LIBS="$LIBS $GSLLIB"
1697    fi
1698    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1699    if test ! "x$USE_EXTENDED_SRC" = x ; then
1700          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1701          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1702    fi
1703    
1704  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1705  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1706  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1707        program hello        program hello
1708        call system('echo hi')        call system('echo hi')
1709        end        end
1710  EOF  EOF
1711  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1712  RETVAL=$?  RETVAL=$?
1713  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1714      HAVE_SYSTEM=t      HAVE_SYSTEM=t
1715      DEFINES="$DEFINES -DHAVE_SYSTEM"      DEFINES="$DEFINES -DHAVE_SYSTEM"
1716      echo "yes"      echo "yes"
1717  else  else
1718      HAVE_SYSTEM=      HAVE_SYSTEM=
1719        echo "no"
1720    fi
1721    rm -f genmake_tcomp*
1722    
1723    printf "  Do we have the fdate() command using $FC...  "
1724    cat > genmake_tcomp.$FS <<EOF
1725          program hello
1726          CHARACTER*(128) string
1727          string = ' '
1728          call fdate( string )
1729          print *, string
1730          end
1731    EOF
1732    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1733    RETVAL=$?
1734    if test "x$RETVAL" = x0 ; then
1735        HAVE_FDATE=t
1736        DEFINES="$DEFINES -DHAVE_FDATE"
1737        echo "yes"
1738    else
1739        HAVE_FDATE=
1740        echo "no"
1741    fi
1742    rm -f genmake_tcomp*
1743    
1744    printf "  Do we have the etime() command using $FC...  "
1745    cat > genmake_tcomp.$FS <<EOF
1746          program hello
1747          REAL*4 ACTUAL, TARRAY(2)
1748          EXTERNAL ETIME
1749          REAL*4 ETIME
1750          actual = etime( tarray )
1751          print *, tarray
1752          end
1753    EOF
1754    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1755    RETVAL=$?
1756    if test "x$RETVAL" = x0 ; then
1757        HAVE_ETIME=t
1758        DEFINES="$DEFINES -DHAVE_ETIME"
1759        echo "yes"
1760    else
1761        HAVE_ETIME=
1762        echo "no"
1763    fi
1764    rm -f genmake_tcomp*
1765    
1766    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1767    check_HAVE_CLOC
1768    if test "x$HAVE_CLOC" != x ; then
1769        echo "yes"
1770    else
1771        echo "no"
1772        if test "x$EMBED_SRC" = xt ; then
1773            echo "    WARNING: you requested file embedding but it has"
1774            echo "      been disabled since C code cannot be called"
1775            EMBED_SRC=
1776        fi
1777    fi
1778    rm -f genmake_t*
1779    
1780    printf "  Can we unlimit the stack size using $FC...  "
1781    check_HAVE_SETRLSTK
1782    if test "x$HAVE_SETRLSTK" = xt ; then
1783        echo "yes"
1784    else
1785      echo "no"      echo "no"
1786  fi  fi
1787  rm -f genmake_tcomp*  rm -f genmake_t*
1788    
1789  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1790  cat > genmake_tcomp.f <<EOF  check_HAVE_SIGREG
1791        program hello  if test "x$HAVE_SIGREG" = xt ; then
       CHARACTER(128) string  
       string = ' '  
       call fdate( string )  
       print *, string  
       end  
 EOF  
 $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 ; then  
     HAVE_FDATE=t  
     DEFINES="$DEFINES -DHAVE_FDATE"  
1792      echo "yes"      echo "yes"
1793  else  else
     HAVE_FDATE=  
1794      echo "no"      echo "no"
1795  fi  fi
1796  rm -f genmake_tcomp*  rm -f genmake_t*
1797    
1798  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we use stat() through C calls...  "
1799  check_HAVE_CLOC  check_HAVE_STAT
1800  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_STAT" != x ; then
1801      echo "yes"      echo "yes"
1802  else  else
1803      echo "no"      echo "no"
1804  fi  fi
1805  rm -f genmake_t*  rm -f genmake_t*
1806    
1807  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1808  check_netcdf_libs  check_netcdf_libs
1809  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1810      echo "yes"      echo "yes"
1811  else  else
1812      echo "no"      echo "no"
1813  fi  fi
1814    DEFINES="$DEFINES $IGNORE_TIME"
1815    
1816    if test "x$EMBED_SRC" = xt ; then
1817        build_embed_encode
1818    fi
1819    if test "x$EMBED_SRC" = xt ; then
1820        ENABLE="$ENABLE embed_files"
1821    fi
1822    
1823  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1824  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1825  for d in $MODS ; do  for d in $MODS ; do
1826      if test ! -d $d ; then      if test ! -d $d ; then
1827          echo          echo
1828          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1829          exit 1          exit 1
1830      else      else
1831          echo -n " $d"          printf "$d "
1832          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1833          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1834      fi      fi
1835  done  done
1836  echo  echo
1837    
1838  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1839      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1840  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1841    
1842  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1843      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1844        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1845          EXEDIR=../exe          EXEDIR=../exe
1846      else      else
1847          EXEDIR=.          EXEDIR=.
# Line 973  if test "x${TOOLSDIR}" = x ; then Line 1856  if test "x${TOOLSDIR}" = x ; then
1856      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1857  fi  fi
1858  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1859      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1860      exit 1      exit 1
1861  fi  fi
1862  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1863      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1864        RETVAL=$?
1865        if test "x${RETVAL}" = x0 ; then
1866            S64='$(TOOLSDIR)/set64bitConst.sh'
1867        else
1868            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1869            RETVAL=$?
1870            if test "x${RETVAL}" = x0 ; then
1871                S64='$(TOOLSDIR)/set64bitConst.csh'
1872            else
1873                cat <<EOF
1874    
1875    ERROR: neither of the two default scripts:
1876    
1877        ${TOOLSDIR}/set64bitConst.sh
1878        ${TOOLSDIR}/set64bitConst.csh
1879    
1880      are working so please check paths or specify (with \$S64) a
1881      working version of this script.
1882    
1883    EOF
1884                exit 1
1885            fi
1886        fi
1887  fi  fi
1888  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1889    
1890  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1891    
1892    #  Set Standard Code Directories:
1893    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1894        STANDARDDIRS="eesupp model"
1895    fi
1896    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1897    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1898    ckM=$?
1899    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1900    ckE=$?
1901    if test $ckM = 0 -a $ckE = 1 ; then
1902        STANDARDDIRS="$STANDARDDIRS eesupp"
1903    fi
1904    
1905  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1906  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1907  #  they appear as regular source code  #  they appear as regular source code
1908  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1909      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1910      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1911        ) > make_eesupp.errors 2>&1
1912      RETVAL=$?      RETVAL=$?
1913      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1914          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1915      else      else
1916          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1917          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1918          exit 1          exit 1
1919      fi      fi
1920  fi  fi
1921    
1922  #same for exch2  #same for pkg/exch2 and pkg/regrid
1923  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1924      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1925      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1926      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1927      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
1928          rm -f make_exch2.errors          RETVAL=$?
1929      else          if test "x${RETVAL}" = x0 ; then
1930          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
1931          cat make_exch2.errors          else
1932          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1933                cat make_${pdir}.errors 1>&2
1934                exit 1
1935            fi
1936      fi      fi
1937  fi  done
1938    
1939  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1940  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1941      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1942      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1943          PDEPEND=$tmp  fi
1944      else  if  test "x${PKG_DEPEND}" = x ; then
1945          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1946          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1947  else  else
1948      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1949          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1950          exit 1          exit 1
1951      fi      fi
1952        echo "  getting package dependency info from  $PKG_DEPEND"
1953    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1954        get_pdepend_list $PKG_DEPEND
1955  fi  fi
1956  echo "  getting package dependency info from  $PDEPEND"  
1957  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1958  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1959  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1960      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1961      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1962  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1963  if test ! "x${RETVAL}" = x0 ; then  fi
1964      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1965      exit 1          echo "Warning:  No package groups information was specified."
1966            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1967    else
1968        if test ! -r ${PKG_GROUPS} ; then
1969            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1970            exit 1
1971        fi
1972        echo "  getting package groups info from      $PKG_GROUPS"
1973  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1974    
1975  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1976  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1977  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1978  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1979      for i in "." $MODS ; do      for i in "." $MODS ; do
1980          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1981                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1982                  break                  break
1983          fi          fi
1984      done      done
1985  fi  fi
1986  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1987      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1988  fi      if test "x${PKG_GROUPS}" = x ; then
1989  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1990      echo "    default packages file disabled"          exit 1
1991        fi
1992  else  else
1993      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1994          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1995            exit 1
1996      else      else
1997          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1998          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1999          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2000          RETVAL=$?          RETVAL=$?
2001          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2002              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2003              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2004              exit 1              exit 1
2005          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2006      fi      fi
2007  fi  fi
2008    for i in $pkg_list ; do
2009        PACKAGES="$PACKAGES $i"
2010    done
2011    echo     "    before group expansion packages are:$PACKAGES"
2012    if test "x${PKG_GROUPS}" != x ; then
2013        RET=1
2014        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2015        echo "    after group expansion packages are: $PACKAGES"
2016    fi
2017    
2018  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2019    echo "" > ./.tmp_pack
2020    for i in $PACKAGES ; do
2021        echo $i >> ./.tmp_pack
2022    done
2023    for i in `grep  "-" ./.tmp_pack` ; do
2024        j=`echo $i | sed 's/[-]//'`
2025        DISABLE="$DISABLE $j"
2026    done
2027  pack=  pack=
2028  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2029      addit="t"      addit="t"
# Line 1098  PACKAGES="$pack" Line 2040  PACKAGES="$pack"
2040  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2041  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2042  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2043    # Test if each explicitly referenced package exists
2044  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2045      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2046          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2047          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2048            exit 1
2049      fi      fi
2050      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2051  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2052  PACKAGES=  PACKAGES=
2053  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2054      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2055  done  done
2056  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2057    echo "    packages are: $PACKAGES"
2058    
2059    #  Check for package MNC: if NetCDF is available, then build the MNC
2060    #  template files ; otherwise, delete mnc from the list of packages.
2061    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2062    mnc_in=$?
2063    if test "x$HAVE_NETCDF" != xt ; then
2064        if test "x$mnc_in" = x0 ; then
2065            cat <<EOF
2066    *********************************************************************
2067    WARNING: the "mnc" package was enabled but tests failed to compile
2068      NetCDF applications.  Please check that:
2069    
2070      1) NetCDF is correctly installed for this compiler and
2071      2) the LIBS variable (within the "optfile") specifies the correct
2072           NetCDF library to link against.
2073    
2074      Due to this failure, the "mnc" package is now DISABLED.
2075    *********************************************************************
2076    EOF
2077            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2078            DISABLE="$DISABLE mnc"
2079        else
2080        #  this prevent to add mnc (due to pdepend rules) if not available
2081            DISABLE="$DISABLE mnc"
2082        fi
2083    else
2084        # we have NetCDF, we try to build MNC template files
2085        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2086        RETVAL=$?
2087        if test "x${RETVAL}" = x0 ; then
2088            rm -f make_mnc.errors
2089        else
2090            echo "Error: problem encountered while building source files in pkg/mnc:"
2091            cat make_mnc.errors 1>&2
2092            if test "x$mnc_in" = x0 ; then
2093                exit 1
2094            else
2095                DISABLE="$DISABLE mnc"
2096            fi
2097        fi
2098    fi
2099    
2100    #  Check for package PROFILES: if NetCDF is not available,
2101    #  then delete profiles from the list of available packages.
2102    if test "x$HAVE_NETCDF" != xt ; then
2103        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2104        RETVAL=$?
2105        if test "x$RETVAL" = x0 ; then
2106            cat <<EOF
2107    *********************************************************************
2108    WARNING: the "profiles" package was enabled but tests failed to
2109      compile NetCDF applications.  Please check that:
2110    
2111  echo "  applying package dependency rules"    1) NetCDF is correctly installed for this compiler and
2112  ck=    2) the LIBS variable (within the "optfile") specifies the correct
2113  while test "x$ck" != xtt ; do         NetCDF library to link against.
2114    
2115      Due to this failure, the "profiles" package is now DISABLED.
2116    *********************************************************************
2117    EOF
2118            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2119            DISABLE="$DISABLE profiles"
2120        else
2121        #  this prevent to add profiles (due to pdepend rules) if not available
2122            DISABLE="$DISABLE profiles"
2123        fi
2124    fi
2125    
2126    if  test "x${PKG_DEPEND}" != x ; then
2127      echo "  applying package dependency rules"
2128      ck=
2129      while test "x$ck" != xtt ; do
2130      i=0      i=0
2131      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2132      rtot=$nname      rtot=$nname
2133      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2134    
2135          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2136          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1131  while test "x$ck" != xtt ; do Line 2142  while test "x$ck" != xtt ; do
2142                  pin="t"                  pin="t"
2143              fi              fi
2144          done          done
2145            #  or in the current $STANDARDDIRS list?
2146            for p in $STANDARDDIRS ; do
2147                if test "x$p" = "x$pname" ; then pin="t" ; fi
2148            done
2149    
2150          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2151          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1153  while test "x$ck" != xtt ; do Line 2168  while test "x$ck" != xtt ; do
2168    
2169          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2170          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2171                #echo "   " $pname ": need to add :" $dname
2172              in_dis="f"              in_dis="f"
2173              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2174                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1173  while test "x$ck" != xtt ; do Line 2189  while test "x$ck" != xtt ; do
2189          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2190          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2191              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2192              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2193              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2194              exit 1              exit 1
2195          fi          fi
2196          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2197            #i=$(( $i + 1 ))
2198      done      done
2199      ck=$ck"t"      ck=$ck"t"
2200  done    done
2201  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2202    fi
2203  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2204      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2205      if test -d $adr ; then      if test -d $adr ; then
# Line 1196  for i in $PACKAGES ; do Line 2214  for i in $PACKAGES ; do
2214      fi      fi
2215  done  done
2216    
 #  Check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 -a "x$HAVE_NETCDF" != xt ; then  
     cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
 fi  
   
2217  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2218  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2219  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2220  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2221  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2222  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2223  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1231  for n in $names ; do Line 2233  for n in $names ; do
2233              fi              fi
2234          done          done
2235          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2236              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2237              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2238          fi          fi
2239      fi      fi
2240  done  done
2241  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2242  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2243      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2244      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2245  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2246    
2247  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2248      case $i in      case $i in
2249          aim_v23)          aim_v23)
2250              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2251              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1253  for i in $PACKAGES ; do Line 2255  for i in $PACKAGES ; do
2255    
2256  done  done
2257    
2258  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2259  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2260  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2261      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2262          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1312  fi Line 2311  fi
2311    
2312  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2313  #  compiler.  #  compiler.
2314  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2315      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2316  fi  fi
2317  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2318    touch adSrcFiles.tmp
2319  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2320      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2321      for j in $list_files ; do      for j in $list_files ; do
2322          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2323      done      done
2324  done  done
2325    if test ! "x"$FS = "x.f" ; then
2326        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2327        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2328    fi
2329    
2330  echo  echo
2331  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2332  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2333  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2334      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2335          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2336      fi      fi
2337  done  done
2338    
2339    if test ! "x$DIVA" = x ; then
2340        echo "  Creating the pseudo-MPI include directory"
2341        INCLUDES="-I./mpi_headers $INCLUDES"
2342        rm -rf ./mpi_headers
2343        mkdir -p ./mpi_headers
2344    
2345        if test "x$MPIINCLUDEDIR" = x ; then
2346            if test "x$MPIHOME" = x ; then
2347                MPIHOME='/usr'
2348            fi
2349            MPIINCLUDEDIR='$MPIHOME/include'
2350        fi
2351    
2352        if test -r $MPIINCLUDEDIR/mpif.h ; then
2353            for i in $MPI_HEADER_FILES; do
2354                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2355            done
2356    
2357            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2358        else
2359            echo " We cannot create a copy of mpif.h!"
2360    #       exit -1
2361        fi
2362    fi
2363    
2364  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2365  rm -rf .links.tmp  rm -rf .links.tmp
2366  mkdir .links.tmp  mkdir .links.tmp
2367    touch .links.tmp/foo
2368    if test ! -r ".links.tmp/foo" ; then
2369        echo
2370        echo "ERROR : something is wrong with your directory permissions or"
2371        echo "   your user file-creation mask (\"umask\") since creating a"
2372        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2373        echo "   not working.  Please try setting your umask to something"
2374        echo "   sane such as:"
2375        echo
2376        echo "      umask 0002"
2377        echo
2378        echo "   and please verify that you have the proper permissions for"
2379        echo "   creating sub-directories and then reading files created"
2380        echo "   within them."
2381        echo
2382        exit 1
2383    fi
2384    rm -f .links.tmp/foo
2385    
2386    if test "x$OPENAD" != x ; then
2387        OAD_DONT_COMPILE="/dev/null"
2388        OAD_DONT_TRANSFORM="/dev/null"
2389        OAD_KEEP_ORIGINAL="/dev/null"
2390        OAD_CB2M_FILES="/dev/null"
2391        echo "  looking for dontCompile file:  "
2392        for i in "." $MODS ; do
2393            if test -r $i"/dontCompile" ; then
2394                OAD_DONT_COMPILE=$i"/dontCompile"
2395                echo "     found $OAD_DONT_COMPILE"
2396                break
2397            fi
2398        done
2399        echo "  looking for dontTransform file:  "
2400        for i in "." $MODS ; do
2401            if test -r $i"/dontTransform" ; then
2402                OAD_DONT_TRANSFORM=$i"/dontTransform"
2403                echo "     found $OAD_DONT_TRANSFORM"
2404                break
2405            fi
2406        done
2407        echo "  looking for keepOriginal file:  "
2408        for i in "." $MODS ; do
2409            if test -r $i"/keepOriginal" ; then
2410                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2411                echo "     found $OAD_KEEP_ORIGINAL"
2412                break
2413            fi
2414        done
2415        echo "  looking for cb2mFiles:  "
2416        for i in "." $MODS ; do
2417            if test -r $i"/cb2mFiles" ; then
2418                OAD_CB2M_FILES=$i"/cb2mFiles"
2419                echo "     found $OAD_CB2M_FILES"
2420                break
2421            fi
2422        done
2423        echo "   OpenAD exceptions:  "
2424    fi
2425    
2426  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2427  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2428  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2429  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2430  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2431  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2432  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2433    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2434  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2435  for d in $alldirs ; do  for d in $alldirs ; do
2436      deplist=      deplist=
2437      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2438      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2439        if test "x$OPENAD" != x ; then
2440            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2441        fi
2442      for sf in $sfiles ; do      for sf in $sfiles ; do
2443          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2444              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2445                    ignore_f=f
2446                  case $d/$sf in                  case $d/$sf in
2447                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2448                            ignore_f=t
2449                          ;;                          ;;
2450                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2451                            ignore_f=t
2452                          ;;                          ;;
2453                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2454                            ignore_f=t
2455                            ;;
2456                      ./BUILD_INFO.h)
2457                            ignore_f=t
2458                            ;;
2459                      ./EMBEDDED_FILES.h)
2460                            ignore_f=t
2461                          ;;                          ;;
2462                    *)                    *)
2463                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2464                          deplist="$deplist $sf"                          #  ignore all soft-links
2465                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2466                                ignore_f=t
2467                            else
2468                                touch .links.tmp/$sf
2469                                deplist="$deplist $sf"
2470                            fi
2471                          ;;                          ;;
2472                  esac                  esac
2473                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2474                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2475                      F)                      case $extn in
2476                          echo    " \\"  >> srclist.inc                        F)
2477                          echo -n " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2478                            printf " $sf" >> F77srclist.tmp
2479                            if test "x$OPENAD" != x ; then
2480                                basename=${sf%%.F}
2481                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2482                                if test -z "$isAD" ; then
2483                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2484                                    if test -z "$toBeIgnored" ; then
2485                                        echo    " \\"  >> nonADF77srclist.tmp
2486                                        printf " $sf" >> nonADF77srclist.tmp
2487                                    else
2488                                        echo "    not to be compiled   :  $sf"
2489                                    fi
2490                                else # file is initially listed as an AD file we want to exclude it
2491                                     # or we want to retain the untransformed version
2492                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2493                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2494                                    if test -n "$notToBeTransformed"; then
2495                                        echo "    not to be transformed:  $sf"
2496                                    fi
2497                                    if test -n "$untransformedVersionToBeKept" ; then
2498                                        echo "    original to be kept  :  $sf"
2499                                    fi
2500                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2501                                        echo    " \\"  >> nonADF77srclist.tmp
2502                                        printf " $sf" >> nonADF77srclist.tmp
2503                                    fi
2504                                fi
2505                            fi
2506                          ;;                          ;;
2507                      F90)                      F90)
2508                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2509                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2510                          ;;                          ;;
2511                      c)                      c)
2512                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2513                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2514                          ;;                          ;;
2515                      h)                      h)
2516                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2517                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2518                          ;;                          ;;
2519                      flow)                      flow)
2520                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2521                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2522                          ;;                          ;;
2523                  esac                     esac
2524                    fi
2525              fi              fi
2526          fi          fi
2527      done      done
2528      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2529          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2530            echo "" >> srclinks.tmp
2531          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2532          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2533          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2534    # This may happen when make thinks that a header file has to be "remade"
2535    # because a module it depends on has changed.  In this case we do nothing.
2536            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2537          fi
2538      fi      fi
2539  done  done
2540  rm -rf .links.tmp  rm -rf .links.tmp
2541  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2542  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2543  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2544  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2545  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2546    echo "" >> ad_flow_files.tmp
2547    
2548    CMDLINE=$0
2549    for xx in "$@" ; do nw=`echo $xx | wc -w`
2550        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2551                            else CMDLINE="$CMDLINE '$xx'" ; fi
2552    done
2553    
2554  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2555      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2556  fi  fi
2557  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2558  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1414  echo "#    $MACHINE" >> $MAKEFILE Line 2560  echo "#    $MACHINE" >> $MAKEFILE
2560  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2561  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2562  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2563  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2564  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2565  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2566    
2567  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2568  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1425  EXE_SVD=$EXECUTABLE"_svd" Line 2571  EXE_SVD=$EXECUTABLE"_svd"
2571  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2572  #  #
2573  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2574  #  #
2575  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2576  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2577  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1445  cat >>$MAKEFILE <<EOF Line 2591  cat >>$MAKEFILE <<EOF
2591  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2592    
2593  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2594  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2595  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2596  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2597  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1462  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2608  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2608  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2609    
2610  # These files are created by Makefile  # These files are created by Makefile
2611  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2612  EOF  EOF
2613    
2614  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2615        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2616    else
2617        echo "EMBEDDED_FILES = " >>$MAKEFILE
2618    fi
2619    
2620  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2621  # Unix ln (link)  # Unix ln (link)
2622  LN = ${LN}  LN = ${LN}
# Line 1481  KPP = ${KPP} Line 2630  KPP = ${KPP}
2630  FC = ${FC}  FC = ${FC}
2631  # Fortran compiler  # Fortran compiler
2632  F90C = ${F90C}  F90C = ${F90C}
2633    # C compiler
2634    CC = ${CC}
2635  # Link editor  # Link editor
2636  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2637    
2638  # Defines for CPP  # Defines for CPP
2639  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1492  INCLUDES = ${INCLUDES} Line 2643  INCLUDES = ${INCLUDES}
2643  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2644  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2645  # Optim./debug for FC  # Optim./debug for FC
2646  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2647  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2648  # Optim./debug for FC  # Optim./debug for FC
2649  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2650  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2651    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2652  # Flags for CC  # Flags for CC
2653  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2654  # Files that should not be optimized  # Files that should not be optimized
2655  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2656  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2657  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2658  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2659  # Name of the Mekfile  # Name of the Mekfile
2660  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2661    
2662  EOF  EOF
2663    
2664  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2665  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2666  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2667  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2668  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2669  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2670    
2671  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2672    
2673  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2674    
2675  .SUFFIXES:  # add definitions for preprocessed sources
2676  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2677    # hence the $FS and $FS90 here.
2678    # for fixed format f90 files we use ff90 or FF90 resp
2679    # but these are not expected to be the original source files
2680    
2681    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2682    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2683    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2684    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2685    echo >> $MAKEFILE
2686    echo '.SUFFIXES:' >> $MAKEFILE
2687    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2688    
2689    cat >>$MAKEFILE <<EOF
2690    
2691  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2692  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2693          @echo Creating \$@ ...          @echo Creating \$@ ...
2694          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2695    
2696  depend:  depend:
2697          @make links          @make links
2698          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2699          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2700            -rm -f makedepend.out
2701    
2702    lib: libmitgcmuv.a
2703    
2704    libmitgcmuv.a: \$(OBJFILES)
2705            ar rcv libmitgcmuv.a \$(OBJFILES)
2706            ar d   libmitgcmuv.a main.o
2707    
2708    obj: \$(OBJFILES)
2709    
2710  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2711    
2712  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2713    
2714  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2715          @printf 'running ... '          @printf 'running ... '
2716          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2717    
2718    # remove most of the files that "make" generates
2719  clean:  clean:
2720          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2721            -rm -rf *.o
2722            -rm -rf *.$FS *.flowdir
2723            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2724    
2725    # remove most of the files that "make" and "make depend" generate
2726  Clean:  Clean:
2727          @make clean          @make clean
2728          @make cleanlinks          @make cleanlinks
2729          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2730          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2731            -rm -f genmake_warnings genmake_errors make.log
2732    
2733    # remove also the executable, files that "genmake2" generates (except Makefile)
2734    #         and output from a run (plus log files from testreport)
2735  CLEAN:  CLEAN:
2736          @make Clean          @make Clean
2737            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2738            -rm -f $LOGFILE genmake_state genmake_*optfile
2739            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2740          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2741          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2742          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2743          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2744            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2745            -rm -rf mnc_test_*
2746    
 #eh3 Makefile: makefile  
2747  makefile:  makefile:
2748          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2749  cleanlinks:  cleanlinks:
2750          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2751    
2752  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2753  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2754          @echo Creating \$@ ...          @echo Creating \$@ ...
2755          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2756  AD_CONFIG.h:  AD_CONFIG.h:
2757          @echo Creating \$@ ...          @echo Creating \$@ ...
2758          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2759  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2760          @echo Creating \$@ ...          @echo Creating \$@ ...
2761          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2762    
2763  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2764  .F.f:          @echo Creating \$@ ...
2765    EOF
2766    
2767    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2768    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2769    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2770    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2771    
2772    if test "x$EMBED_SRC" = xt ; then
2773        cat >>$MAKEFILE <<EOF
2774    
2775    decode_files.o : EMBEDDED_FILES.h
2776    
2777    ##  \$(F77_PP_SRC_FILES)
2778    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2779            @echo Creating \$@ ...
2780            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2781            -rm -f all_fF.tar.gz
2782            -gzip all_fF.tar
2783    
2784    EMBEDDED_FILES.h : all_fF.tar.gz
2785            @echo Creating \$@ ...
2786            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2787    
2788    EOF
2789    fi
2790    
2791    cat >>$MAKEFILE <<EOF
2792    
2793    # The normal chain of rules is (  .F - .$FS - .o  )
2794    
2795    ## This nullifies any default implicit rules concerning these two file types:
2796    ## %.o : %.F
2797    
2798    .F.$FS:
2799          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2800  .f.o:  .$FS.o:
2801            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2802    .F.o:
2803          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2804  .F90.f90:  .F90.$FS90:
2805          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2806  .f90.o:  .FF90.f$FS90:
2807            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2808    .$FS90.o:
2809          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2810    .f$FS90.o:
2811            cp \$< \$(basename  \$<).f90
2812            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2813  .c.o:  .c.o:
2814          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2815    .flow.flowdir:
2816            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2817    
2818  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2819  .F.p:  .F.p:
2820          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2821  .p.f:  .p.$FS:
2822          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2823    
2824    EOF
2825    
2826  #=========================================  #=========================================
2827  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2828    #===  for TAMC/TAF  ======================
2829    
2830    if test "x$OPENAD" = x ; then
2831    
2832    cat >>$MAKEFILE <<EOF
2833    
2834  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2835  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1609  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2844  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2844  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2845  for i in $ad_vars ; do  for i in $ad_vars ; do
2846      name=$i      name=$i
2847      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2848      eval $t1      eval $t1
2849      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2850      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2851  done  done
2852    
2853  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2854  echo >> $MAKEFILE  echo >> $MAKEFILE
2855  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2856  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2857  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2858      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2859      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2860  done  done
2861  echo >> $MAKEFILE  echo >> $MAKEFILE
2862  rm -f ad_files  rm -f adSrcFiles.tmp
2863    
2864  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2865    
2866  # ... AD ...  # ... AD ...
2867  adall: ad_taf  adall: \$(EXE_AD)
2868  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2869  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2870    
2871  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2872          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2873          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2874          -rm -f ad_config.template          -rm -f ad_config.template
2875          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2876          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2877          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2878    
2879  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2880          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2881          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2882            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2883    
2884  adtafonly:  adtafonly:
2885          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2886          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2887            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2888  ad_taf: ad_taf_output.o \$(OBJFILES)  
2889          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2890            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2891  ad_tamc_output.f: ad_input_code.f  
2892          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2893          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2894            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2895    
2896  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2897          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2898    
2899    adonlyfwd:
2900            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2901    
2902    adtrick:
2903            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2904    
2905  # ... FTL ...  # ... FTL ...
2906  ftlall: ftl_taf  ftlall: ftl_taf
2907  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2908  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2909    
2910  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2911          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2912          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2913          -rm -f ftl_config.template          -rm -f ftl_config.template
2914          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2915          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2916          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2917    
2918  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2919          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2920          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2921            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2922    
2923  ftltafonly:  ftltafonly:
2924          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2925          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2926            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2927    
2928  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2929          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2930    
2931  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2932          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2933          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2934    
2935  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2936          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2937    
2938  # ... SVD ...  # ... SVD ...
2939  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2940  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2941            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2942    svdall: svd_touch svd_taf
2943    
2944  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2945          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2946    
2947            @echo "--->>> Only COMPILE svd code! <<<---"
2948            @echo "--->>> Assumes you previously <<<---"
2949            @echo "--->>> did make svdtaf        <<<---"
2950    
2951    svd_touch:
2952            @echo "--->>> Only COMPILE svd code! <<<---"
2953            @echo "--->>> Assumes you previously <<<---"
2954            @echo "--->>> did make svdtaf        <<<---"
2955            touch ad_taf_output.$FS ftl_taf_output.$FS
2956            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2957            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2958            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2959            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2960            -rm -f ftl_config.template
2961    
2962  #=========================================  EOF
2963    
2964    fi
2965    
2966    #===  for OpenAD  ========================
2967    
2968    if test "x$OPENAD" != x ; then
2969    
2970    # ============ begin OpenAD specific section ==============
2971    
2972    cat >>$MAKEFILE <<EOF
2973    
2974    # all the source files linked from the various locations:
2975    ALL_LINKED_FILES= \
2976    \$(F77_SRC_FILES) \
2977    \$(C_SRC_FILES) \
2978    \$(H_SRC_FILES) \
2979    \$(F90_SRC_FILES) \
2980    \$(SPECIAL_FILES)
2981    
2982    ifndef OPENADROOT
2983      \$(error "Error:  environment variable OPENADROOT not defined!")
2984    endif
2985    
2986    ifndef XAIFSCHEMAROOT
2987      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2988    endif
2989    
2990    ifndef XAIFBOOSTERROOT
2991      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2992    endif
2993    
2994    EOF
2995    
2996    echo "  Add the source list for common block to module conversion "
2997    echo >> $MAKEFILE
2998    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2999    for i in `cat ${OAD_CB2M_FILES}` ; do
3000      echo    " \\" >> $MAKEFILE
3001      printf " $i" >> $MAKEFILE
3002    done
3003    echo >> $MAKEFILE
3004    
3005    echo "  Add the source list for AD code generation"
3006    echo >> $MAKEFILE
3007    printf "AD_FILES = " >> $MAKEFILE
3008    for i in `cat ${OAD_CB2M_FILES}` ; do
3009      echo    " \\" >> $MAKEFILE
3010      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3011    done
3012    AD_FILES=`cat adSrcFiles.tmp`
3013    for i in $AD_FILES ; do
3014      basename=${i%%.f}
3015      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3016      if test -z "$toBeIgnored" ; then
3017        echo    " \\" >> $MAKEFILE
3018        printf " $i" >> $MAKEFILE
3019      fi
3020    done
3021    echo >> $MAKEFILE
3022    rm -f adSrcFiles.tmp
3023    
3024    cat >>$MAKEFILE <<EOF
3025    
3026    adAll: \$(EXE_AD)
3027    .PHONY: adAll
3028    
3029    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3030    
3031    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3032    
3033    .PHONY: adDepend
3034    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3035            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3036            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3037            -rm -f makedepend.out
3038    
3039    OPENAD_SUPPORT_F90_SRC_FILES = \
3040    w2f__types.F90 \
3041    OAD_active.F90 \
3042    OAD_cp.F90 \
3043    OAD_rev.F90 \
3044    OAD_tape.F90
3045    
3046    OPENAD_SUPPORT_C_SRC_FILES = \
3047    iaddr.c \
3048    timeRatio.c
3049    
3050    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3051            cat \$^ > \$@
3052    
3053    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3054            cat \$^ > \$@
3055    
3056    f95_test.out: f95_test_mods.f90 f95_test.f90
3057            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3058            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3059    
3060    # the file included below is created by the
3061    # postProcessor and its inclusion sets the
3062    # variable POSTPROCESSEDFILES
3063    # used below. Because the file is made during
3064    # make it won't be read until the second (recursive)
3065    # invocation in the rule below
3066    -include postProcess.make
3067    
3068    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3069    
3070    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3071    
3072    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3073    ifeq (\$(MAKELEVEL),0)
3074            \$(MAKE) adAll
3075    else
3076            touch \$@
3077    endif
3078    
3079    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3080    ifeq (\$(MAKELEVEL),1)
3081            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3082    else
3083            touch \$@
3084    endif
3085    
3086    # makefile debug rule
3087    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3088    .PHONY: openad
3089    
3090    # create the module files
3091    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3092            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3093    
3094    # create the header files
3095    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3096            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3097    
3098    # change everybody else to use the new module files:
3099    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3100            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3101    
3102    # makefile debug rule
3103    small_f: \$(CB2M_F90_PP_SRC_FILES)
3104    .PHONY: small_f
3105    
3106    ad_output.txt: \$(EXE_AD)
3107            @printf 'linking data files ... '
3108            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3109            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3110            @printf 'running ... '
3111            @./\$(EXE_AD) > \$@
3112    
3113    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3114    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3115            cat \$^ > \$@
3116    
3117    # strip all comments and blanks to reduce
3118    # the file size in order to reduce perl's memory requirements
3119    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3120            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3121    
3122    # mfef90 preprocessing
3123    # expand statement functions
3124    # expose mfef90 specific substring handling
3125    # add the w2f__types module
3126    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3127            ./mfef90 -r8 -z -F -N132 \$<
3128            mv \$<.B \$(basename \$<).B
3129            ./whirl2f -openad \$(basename \$<).B
3130            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3131    
3132    # canonicalizer
3133    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3134            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3135    
3136    # F -> WHIRL
3137    # note that the canonicalized version cuts off at col 72
3138    # doing this also for string constants which is ok as long
3139    # as we are in fixed mode and cut of exactly there.
3140    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3141    # characters respectively.
3142    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3143            ./mfef90 -r8 -z -F \$<
3144            mv \$<.B \$@
3145    
3146    # WHIRL -> XAIF
3147    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3148            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3149    
3150    # XAIF -> XAIF'
3151    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3152            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3153    
3154    # XAIF' -> WHIRL'
3155    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3156            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3157    
3158    # WHIRL' -> F'
3159    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3160            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3161    
3162    # insert template directives
3163    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3164            ../OAD_support/insertTemplateDir.bash \$< \$@
3165    
3166    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3167    # postprocess F'
3168    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3169            # the target is a placeholder to signal execution of the rule
3170            touch \$@
3171            # this step also creates the file postProcess.make but we cannot
3172            # name it as the target or else make will try to remake it for
3173            # the include directive above for any rule, e.g. make clean
3174            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3175    
3176    # setup some links
3177    %.xsd:
3178            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3179    
3180    mfef90:
3181            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3182    
3183    # link the support files:
3184    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3185            \$(LN) ../OAD_support/\$@ .
3186    
3187    whirl2xaif xaif2whirl:
3188            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3189    
3190    preProcess.py postProcess.py:
3191            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3192    
3193    whirl2f whirl2f_be:
3194            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3195    
3196    oadDriver:
3197            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3198    
3199    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3200    
3201    # ============ end OpenAD specific section ==============
3202    
3203  EOF  EOF
3204    
3205    fi
3206    
3207    #=========================================
3208    
3209  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3210      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3211  fi  fi
# Line 1715  for i in $KPPFILES ; do Line 3217  for i in $KPPFILES ; do
3217      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3218          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3219      fi      fi
3220      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3221  done  done
3222    
3223  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1725  for i in $NOOPTFILES ; do Line 3227  for i in $NOOPTFILES ; do
3227      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3228          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3229      fi      fi
3230      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3231      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3232  done  done
3233    
# Line 1739  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3241  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3241  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3242    
3243  # Create special header files  # Create special header files
3244  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3245  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3246      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3247  else  else
3248      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3249      RETVAL=$?      RETVAL=$?
3250      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
3251          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1753  else Line 3255  else
3255      fi      fi
3256  fi  fi
3257  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3258      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3259  fi  fi
3260    
   
3261  #  Write the "state" for future records  #  Write the "state" for future records
3262  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3263      echo -n "" > genmake_state      printf "" > genmake_state
3264      for i in $gm_state ; do      for i in $gm_state ; do
3265          t1="t2=\$$i"          t1="t2=\$$i"
3266          eval $t1          eval $t1
3267          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3268      done      done
3269  fi  fi

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