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revision 1.60 by edhill, Wed Jan 14 03:44:48 2004 UTC revision 1.205 by jmc, Sun May 23 03:45:58 2010 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 45  test_for_string_in_file() {
45      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 67  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 80  find_possible_configs()  { Line 299  find_possible_configs()  {
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 100  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # makedepend is not always available      look_for_makedepend
325      if test "x${MAKEDEPEND}" = x ; then  
326        which makedepend >& /dev/null      #================================================================
327        RETVAL=$?      #  look for possible C compilers
328        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
330           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
331        fi          rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 136  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 210  get_pdepend_list()  { Line 480  get_pdepend_list()  {
480      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
481      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
482      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
483          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
484          > ./.pd_tmp          > ./.pd_tmp
485        RETVAL=$?
486        if test ! "x${RETVAL}" = x0 ; then
487          echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$1\""
488          exit 1
489        fi
490      . ./.pd_tmp      . ./.pd_tmp
491      rm -f ./.pd_tmp      rm -f ./.pd_tmp
492    
     echo -n "PNAME = "${}  
493  }  }
494    
495    
# Line 229  Usage: "$0" [OPTIONS] Line 503  Usage: "$0" [OPTIONS]
503      -help | --help | -h | --h      -help | --help | -h | --h
504            Print this help message and exit.            Print this help message and exit.
505    
506        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
507          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
508              Use "NAME" as the adoptfile.  By default, the file at
509              "tools/adjoint_options/adjoint_default" will be used.
510    
511      -nooptfile | --nooptfile      -nooptfile | --nooptfile
512        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
513        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 244  Usage: "$0" [OPTIONS] Line 523  Usage: "$0" [OPTIONS]
523        -pdefault=NAME | --pdefault=NAME        -pdefault=NAME | --pdefault=NAME
524            Get the default package list from "NAME".            Get the default package list from "NAME".
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529      -make NAME | -m NAME      -make NAME | -m NAME
530        --make=NAME | -m=NAME        --make=NAME | -m=NAME
531            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
# Line 253  Usage: "$0" [OPTIONS] Line 535  Usage: "$0" [OPTIONS]
535        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
536            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
537    
538        -makedepend NAME | -md NAME
539          --makedepend=NAME | -md=NAME
540              Use "NAME" for the MAKEDEPEND program.
541    
542      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
543        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
544            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 289  Usage: "$0" [OPTIONS] Line 575  Usage: "$0" [OPTIONS]
575            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
576            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
577    
578        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
579              Use "NAME" as the C compiler.  By default, genmake
580              will search for a working compiler by trying a list of
581              "usual suspects" such as gcc, c89, cc, etc.
582    
583      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
584            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
585            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
586            is being used.            is being used.
587    
588        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
589              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
590              *only* works if CPP_EEOPTIONS.h allows this.
591    
592        -ignoretime | -ignore_time | --ignoretime | --ignore_time
593              Ignore all the "wall clock" routines entirely.  This will
594              not in any way hurt the model results -- it simply means
595              that the code that checks how long the model spends in
596              various routines will give junk values.
597    
598        -ts | --ts
599              Produce timing information per timestep
600        -papis | --papis
601              Produce summary MFlop/s (and IPC) with PAPI per timestep
602        -pcls | --pcls
603              Produce summary MFlop/s etc. with PCL per timestep
604        -foolad | --foolad
605              Fool the AD code generator
606        -papi | --papi
607              Performance analysis with PAPI
608        -pcl | --pcl
609              Performance analysis with PCL
610        -hpmt | --hpmt
611              Performance analysis with the HPM Toolkit
612    
613        -gsl | --gsl
614              Use GSL to control floating point rounding and precision
615        -devel | --devel
616              Add additional warning and debugging flags for development
617    
618        -mpi | --mpi
619              Include MPI header files and link to MPI libraries
620        -mpi=PATH | --mpi=PATH
621              Include MPI header files and link to MPI libraries using MPI_ROOT
622              set to PATH. i.e. Include files from \$PATH/include, link to libraries
623              from \$PATH/lib and use binaries from \$PATH/bin.
624    
625        -omp | --omp
626              Activate OpenMP code + use Compiler option OMPFLAG
627        -omp=OMPFLAG | --omp=OMPFLAG
628              Activate OpenMP code + use Compiler option OMPFLAG
629    
630        -es | --es | -embed-source | --embed-source
631              Embed a tarball containing the full source code
632              (including the Makefile, etc.) used to build the
633              executable [off by default]
634    
635    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
636    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
637    
# Line 305  Usage: "$0" [OPTIONS] Line 643  Usage: "$0" [OPTIONS]
643    
644    For more detailed genmake documentation, please see:    For more detailed genmake documentation, please see:
645    
646      http://mitgcm.org/devel_HOWTO/      http://mitgcm.org/public/devel_HOWTO/
647    
648  EOF  EOF
649    
# Line 314  EOF Line 652  EOF
652    
653  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
654  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
655    
656        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
657        if test ! "x$FC_NAMEMANGLE" = x ; then
658            return 0
659        fi
660    
661      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
662            
663      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 331  WARNING: Please contact <MITgcm-support@ Line 675  WARNING: Please contact <MITgcm-support@
675  EOF  EOF
676          return 1          return 1
677      fi      fi
678      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
679      RETVAL=$?      RETVAL=$?
680      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
681          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 343  WARNING: Please contact <MITgcm-support@ Line 687  WARNING: Please contact <MITgcm-support@
687  EOF  EOF
688          return 1          return 1
689      fi      fi
690      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
691        subroutine tcall( string )        subroutine tcall( string )
692        character*(*) string        character*(*) string
693        call tsub( string )        call tsub( string )
694        end        end
695  EOF  EOF
696      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
697      RETVAL=$?      RETVAL=$?
698      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
699          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 361  WARNING: Please contact <MITgcm-support@ Line 705  WARNING: Please contact <MITgcm-support@
705  EOF  EOF
706          return 1          return 1
707      fi      fi
708      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
709      RETVAL=$?      RETVAL=$?
710      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
711          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 759  void FC_NAMEMANGLE(cloc) ( double *curti
759   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
760  }  }
761  EOF  EOF
762      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
763        echo $COMM >> genmake_warnings
764        $COMM >> genmake_warnings 2>&1
765      RET_C=$?      RET_C=$?
766      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
767        program hello        program hello
768        Real*8 wtime        REAL*8 wtime
769        external cloc        external cloc
770        call cloc(wtime)        call cloc(wtime)
771        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
772        end program hello        end
773  EOF  EOF
774      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
775        echo $COMM >> genmake_warnings
776        $COMM >> genmake_warnings 2>&1
777      RET_F=$?      RET_F=$?
778      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
779      RETVAL=$?      RETVAL=$?
780      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
781          HAVE_CLOC=t          HAVE_CLOC=t
# Line 437  EOF Line 785  EOF
785  }  }
786    
787    
788    check_HAVE_SIGREG()  {
789        if test ! "x$HAVE_SIGREG" = x ; then
790            return
791        fi
792        get_fortran_c_namemangling
793        cat <<EOF > genmake_tc_1.c
794    $FC_NAMEMANGLE
795    #include <stdlib.h>
796    #include <stdio.h>
797    #include <signal.h>
798    #include <errno.h>
799    #include <ucontext.h>
800    
801    int * ip;
802    
803    static void killhandler(
804        unsigned int sn, siginfo_t  si, struct ucontext *sc )
805    {
806        *ip = *ip + 1;
807        return;
808    }
809    
810    void FC_NAMEMANGLE(sigreg) (int * aip)
811    {
812        struct sigaction s;
813        ip = aip;
814        s.sa_flags = SA_SIGINFO;
815        s.sa_sigaction = (void *)killhandler;
816        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
817            printf("Sigaction returned error = %d\n", errno);
818            exit(0);
819        }
820        return;
821    }
822    EOF
823        COMM="$CC $CFLAGS -c genmake_tc_1.c"
824        echo $COMM >> genmake_warnings
825        $COMM >> genmake_warnings 2>&1
826        RET_C=$?
827        cat <<EOF > genmake_tc_2.$FS
828          program hello
829          integer anint
830          common /iv/ anint
831          external sigreg
832          call sigreg(anint)
833          end
834    EOF
835        echo >> genmake_warnings
836        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
837        cat genmake_tc_2.$FS >> genmake_warnings
838        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
839        echo $COMM >> genmake_warnings
840        $COMM >> genmake_warnings 2>&1
841        RETVAL=$?
842        if test "x$RETVAL" = x0 ; then
843            HAVE_SIGREG=t
844            DEFINES="$DEFINES -DHAVE_SIGREG"
845        fi
846        rm -f genmake_tc*
847    }
848    
849    
850    check_HAVE_SETRLSTK()  {
851        if test "x$HAVE_SETRLSTK" = xt ; then
852            DEFINES="$DEFINES -DHAVE_SETRLSTK"
853            return
854        fi  
855        if test ! "x$HAVE_SETRLSTK" = x ; then
856            return
857        fi
858        get_fortran_c_namemangling
859        cat <<EOF > genmake_tc_1.c
860    $FC_NAMEMANGLE
861    #include <sys/time.h>
862    #include <sys/resource.h>
863    #include <unistd.h>
864    void FC_NAMEMANGLE(setrlstk) ()
865    {
866        struct rlimit rls;
867        rls.rlim_cur = RLIM_INFINITY;
868        rls.rlim_max = RLIM_INFINITY;
869        setrlimit(RLIMIT_STACK, &rls);
870        return;
871    }
872    EOF
873        COMM="$CC $CFLAGS -c genmake_tc_1.c"
874        echo $COMM >> genmake_warnings
875        $COMM >> genmake_warnings 2>&1
876        RET_C=$?
877        cat <<EOF > genmake_tc_2.$FS
878          program hello
879          external setrlstk
880          call setrlstk()
881          end
882    EOF
883        echo >> genmake_warnings
884        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
885        cat genmake_tc_2.$FS >> genmake_warnings
886        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
887        echo $COMM >> genmake_warnings
888        $COMM >> genmake_warnings 2>&1
889        RETVAL=$?
890        if test "x$RETVAL" = x0 ; then
891            HAVE_SETRLSTK=t
892            DEFINES="$DEFINES -DHAVE_SETRLSTK"
893        fi
894        rm -f genmake_tc*
895    }
896    
897    
898    check_HAVE_STAT()  {
899        get_fortran_c_namemangling
900        cat <<EOF > genmake_tc_1.c
901    $FC_NAMEMANGLE
902    #include <stdio.h>
903    #include <stdlib.h>
904    #include <unistd.h>
905    #include <sys/stat.h>
906    #include <sys/types.h>
907    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
908    {
909        char name[512];
910        struct stat astat;
911    
912        name[0] = 'a'; name[1] = '\0';
913        if (! stat(name, &astat))
914            *nbyte = (int)(astat.st_size);
915        else
916            *nbyte = -1;
917    }
918    EOF
919        COMM="$CC $CFLAGS -c genmake_tc_1.c"
920        echo $COMM >> genmake_warnings
921        $COMM >> genmake_tc.log 2>&1
922        RET_C=$?
923        cat <<EOF > genmake_tc_2.$FS
924          program hello
925          integer nbyte
926          call tfsize(nbyte)
927          print *," HELLO WORLD", nbyte
928          end
929    EOF
930        echo >> genmake_warnings
931        echo "running: check_HAVE_STAT()" >> genmake_warnings
932        cat genmake_tc_2.$FS >> genmake_warnings
933        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
934        echo $COMM >> genmake_warnings
935        $COMM >> genmake_tc.log 2>&1
936        RETVAL=$?
937        if test "x$RETVAL" = x0 ; then
938            HAVE_STAT=t
939            DEFINES="$DEFINES -DHAVE_STAT"
940        fi
941        rm -f genmake_tc*
942    }
943    
944    
945  check_netcdf_libs()  {  check_netcdf_libs()  {
946        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
947            return
948        fi
949        echo >> genmake_warnings
950        echo "running: check_netcdf_libs()" >> genmake_warnings
951      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
952        program fgennc        program fgennc
953  #include "netcdf.inc"  #include "netcdf.inc"
954    EOF
955        if test ! "x$MPI" = x ; then
956            echo '#include "mpif.h"' >> genmake_tnc.F
957        fi
958        cat <<EOF >> genmake_tnc.F
959        integer iret, ncid, xid        integer iret, ncid, xid
960        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
961        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
# Line 450  check_netcdf_libs()  { Line 965  check_netcdf_libs()  {
965        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
966        end        end
967  EOF  EOF
968      $CPP genmake_tnc.F > genmake_tnc.f  \      echo "===  genmake_tnc.F  ===" > genmake_tnc.log
969          &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1      cat genmake_tnc.F >> genmake_tnc.log
970        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
971        RET_CPP=f
972        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
973        echo "$COMM" >> genmake_tnc.log
974        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
975        if test "x$RET_CPP" = xf ; then
976            echo "  WARNING: CPP failed to pre-process the netcdf test." \
977                >> genmake_tnc.log
978            echo "    Please check that \$INCLUDES is properly set." \
979                >> genmake_tnc.log
980        fi
981        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
982        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
983        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
985      RET_COMPILE=$?      RET_COMPILE=$?
986      test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1      cat genmake_tnc.log >> genmake_warnings
987      RETVAL=$?  
988      if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then      #EH3  Remove test program execution for machines that either disallow
989        #EH3  execution or cannot support it (eg. cross-compilers)
990        #EH3
991        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
992        #EH3 RETVAL=$?
993        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
994    
995        if test "x$RET_COMPILE" = x0 ; then
996          HAVE_NETCDF=t          HAVE_NETCDF=t
997      else      else
998            # try again with "-lnetcdf" added to the libs
999            echo "try again with added '-lnetcdf'" > genmake_tnc.log
1000            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1001            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1002            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1003            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1004                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1005                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1006            RET_COMPILE=$?
1007          cat genmake_tnc.log >> genmake_warnings          cat genmake_tnc.log >> genmake_warnings
1008            if test "x$RET_COMPILE" = x0 ; then
1009                LIBS="$LIBS -lnetcdf"
1010                HAVE_NETCDF=t
1011            else
1012            # try again with "-lnetcdff" added to the libs
1013                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1014                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1015                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1016                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1017                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1018                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1019                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1020                RET_COMPILE=$?
1021                cat genmake_tnc.log >> genmake_warnings
1022                if test "x$RET_COMPILE" = x0 ; then
1023                    LIBS="$LIBS -lnetcdff -lnetcdf"
1024                    HAVE_NETCDF=t
1025                fi
1026            fi
1027      fi      fi
1028      rm -f genmake_tnc*      rm -f genmake_tnc*
1029  }  }
1030    
1031    
1032    
1033    ###############################################################################
1034    #   Sequential part of script starts here
1035    ###############################################################################
1036    
1037  #  Set defaults here  #  Set defaults here
1038  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1039    
# Line 471  PLATFORM= Line 1041  PLATFORM=
1041  LN=  LN=
1042  S64=  S64=
1043  KPP=  KPP=
1044  FC=  #FC=
1045  CPP=  #CC=gcc
1046    #CPP=
1047  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1048  DEFINES=  DEFINES=
1049  PACKAGES=  PACKAGES=
1050  ENABLE=  ENABLE=
1051  DISABLE=  DISABLE=
1052  MAKEFILE=  # MAKEFILE=
1053  MAKEDEPEND=  # MAKEDEPEND=
1054  PDEPEND=  PDEPEND=
1055  DUMPSTATE=t  DUMPSTATE=t
1056  PDEFAULT=  PDEFAULT=
1057  OPTFILE=  OPTFILE=
1058  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1059  FFLAGS=  FFLAGS=
1060  FOPTIM=  FOPTIM=
1061    FEXTRAFLAGS=
1062    USE_EXTENDED_SRC=
1063    EXTENDED_SRC_FLAG=
1064  CFLAGS=  CFLAGS=
1065  KFLAGS1=  KFLAGS1=
1066  KFLAGS2=  KFLAGS2=
1067    #LDADD=
1068  LIBS=  LIBS=
1069  KPPFILES=  KPPFILES=
1070  NOOPTFILES=  NOOPTFILES=
1071  NOOPTFLAGS=  NOOPTFLAGS=
1072    MPI=
1073    MPIPATH=
1074    OMP=
1075    OMPFLAG=
1076    USE_R4=
1077    TS=
1078    PAPIS=
1079    PCLS=
1080    FOOLAD=
1081    PAPI=
1082    PCL=
1083    HPMT=
1084    GSL=
1085    DEVEL=
1086    HAVE_TEST_L=
1087    
1088  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1089  HAVE_SYSTEM=  HAVE_SYSTEM=
1090  HAVE_FDATE=  HAVE_FDATE=
1091  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1092  HAVE_CLOC=  HAVE_CLOC=
1093    # HAVE_SETRLSTK=
1094    HAVE_STAT=
1095  HAVE_NETCDF=  HAVE_NETCDF=
1096    HAVE_ETIME=
1097    IGNORE_TIME=
1098    
1099  MODS=  MODS=
1100  TOOLSDIR=  TOOLSDIR=
# Line 509  SOURCEDIRS= Line 1102  SOURCEDIRS=
1102  INCLUDEDIRS=  INCLUDEDIRS=
1103  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1104    
1105    G2ARGS=
1106    BASH=
1107  PWD=`pwd`  PWD=`pwd`
1108  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1109  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1110  THISHOSTNAME=`hostname`  EMBED_SRC=
1111    THISHOST=`hostname`
1112  THISCWD=`pwd`  THISCWD=`pwd`
1113  THISDATE=`date`  THISDATE=`date`
1114    THISUSER=`echo $USER`
1115    THISVER=
1116  MACHINE=`uname -a`  MACHINE=`uname -a`
1117  EXECUTABLE=  EXECUTABLE=
1118  EXEHOOK=  EXEHOOK=
# Line 524  IEEE= Line 1122  IEEE=
1122  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1123      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1124  fi  fi
1125    FS=
1126    FS90=
1127    
1128  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1129  AD_OPTFILE=  AD_OPTFILE=
# Line 541  TAMC_EXTRA= Line 1141  TAMC_EXTRA=
1141    
1142  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1143  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1144  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1145    
1146  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1147  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1148  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1149  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1150  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1151  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1152    
1153  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1154  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 571  EOF Line 1171  EOF
1171    
1172  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1173  gm_local="genmake_local"  gm_local="genmake_local"
1174  for i in . $MODS ; do  printf "  getting local config information:  "
1175      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1176      echo "using $gm_local"      echo "using $gm_local"
1177      . $gm_local      . $gm_local
1178      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 587  else Line 1181  else
1181      echo "none found"      echo "none found"
1182  fi  fi
1183    
1184  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1185  #parse_options  #parse_options
1186  ac_prev=  ac_prev=
1187  for ac_option ; do  for ac_option in "$@" ; do
1188    
1189        G2ARGS="$G2ARGS \"$ac_option\""
1190    
1191      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1192      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 642  for ac_option ; do Line 1229  for ac_option ; do
1229          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1230              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1231                    
1232            -bash | --bash)
1233                ac_prev=BASH ;;
1234            -bash=* | --bash=*)
1235                BASH=$ac_optarg ;;
1236            
1237            -makedepend | --makedepend | -md | --md)
1238                ac_prev=MAKEDEPEND ;;
1239            -makedepend=* | --makedepend=* | -md=* | --md=*)
1240                MAKEDEPEND=$ac_optarg ;;
1241            
1242          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1243              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1244          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 683  for ac_option ; do Line 1280  for ac_option ; do
1280  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1281  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1282  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1283                        
1284            -cc | --cc)
1285                ac_prev=CC ;;
1286            -cc=* | --cc=*)
1287                CC=$ac_optarg ;;
1288            
1289          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1290              ac_prev=FC ;;              ac_prev=FC ;;
1291          -fc=* | --fc=*)          -fc=* | --fc=*)
1292              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1293                    
1294            -fs | --fs)
1295                ac_prev=FS ;;
1296            -fs=* | --fs=*)
1297                FS=$ac_optarg ;;
1298            
1299            -fs90 | --fs90)
1300                ac_prev=FS90 ;;
1301            -fs90=* | --fs90=*)
1302                FS90=$ac_optarg ;;
1303            
1304          -ieee | --ieee)          -ieee | --ieee)
1305              IEEE=true ;;              IEEE=true ;;
1306          -noieee | --noieee)          -noieee | --noieee)
1307              IEEE= ;;              IEEE= ;;
1308    
1309            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1310                USE_R4=true ;;
1311    
1312            -ts | --ts)
1313                TS=true ;;
1314            -papis | --papis)
1315                PAPIS=true ;;
1316            -pcls | --pcls)
1317                PCLS=true ;;
1318            -foolad | --foolad)
1319                FOOLAD=true ;;
1320            -papi | --papi)
1321                PAPI=true ;;
1322            -pcl | --pcl)
1323                PCL=true ;;
1324            -hpmt | --hpmt)
1325                HPMT=true ;;
1326    
1327            -gsl | --gsl)
1328                GSL=true ;;
1329    
1330            -devel | --devel)
1331                DEVEL=true ;;
1332    
1333            -mpi | --mpi)
1334                MPI=true ;;
1335            -mpi=* | --mpi=*)
1336                MPIPATH=$ac_optarg
1337                MPI=true ;;
1338                    
1339  #       -jam | --jam)          -omp | --omp)
1340  #           JAM=1 ;;              OMP=true ;;
1341  #       -nojam | --nojam)          -omp=* | --omp=*)
1342  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1343                OMP=true ;;
1344                    
1345          -ds | --ds)          -ds | --ds)
1346              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 711  for ac_option ; do Line 1354  for ac_option ; do
1354              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1355          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1356              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1357            
1358            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1359                IGNORE_TIME="-DIGNORE_TIME" ;;
1360    
1361            -es | --es | -embed-source | --embed-source)
1362                EMBED_SRC=t ;;
1363    
1364          -*)          -*)
1365              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 726  for ac_option ; do Line 1375  for ac_option ; do
1375            
1376  done  done
1377    
1378    
1379  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1380      echo      echo
1381      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1382      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1383      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1384      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1385      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1386      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1387      echo      echo
1388  fi  fi
1389    
1390    #  Find the MITgcm ${ROOTDIR}
1391  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1392      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1393        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1394          ROOTDIR=".."          ROOTDIR=".."
1395      else      else
1396          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1397              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1398                  ROOTDIR=$d                  ROOTDIR=$d
1399                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1400                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1401                  break                  break
1402              fi              fi
# Line 763  if test ! -d ${ROOTDIR} ; then Line 1414  if test ! -d ${ROOTDIR} ; then
1414      exit 1      exit 1
1415  fi  fi
1416    
1417    #  Find the MITgcm ${THISVER}
1418    version_file="${ROOTDIR}/doc/tag-index"
1419    if test -f $version_file ; then
1420        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1421    #-  remove ./BUILD_INFO.h file if older than version_file
1422        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1423            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1424            rm -f ./BUILD_INFO.h
1425        fi
1426    fi
1427    
1428    if test "x$MAKEFILE" = x ; then
1429        MAKEFILE="Makefile"
1430    fi
1431    
1432  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1433  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1434      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 779  if test "x$OPTFILE" != xNONE ; then Line 1445  if test "x$OPTFILE" != xNONE ; then
1445          . "$OPTFILE"          . "$OPTFILE"
1446          RETVAL=$?          RETVAL=$?
1447          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1448              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1449              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1450              exit 1              exit 1
1451          fi          fi
# Line 806  if test "x${AD_OPTFILE}" != xNONE ; then Line 1472  if test "x${AD_OPTFILE}" != xNONE ; then
1472          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1473          RETVAL=$?          RETVAL=$?
1474          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1475              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1476              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1477              exit 1              exit 1
1478          fi          fi
# Line 819  if test "x${AD_OPTFILE}" != xNONE ; then Line 1485  if test "x${AD_OPTFILE}" != xNONE ; then
1485      fi      fi
1486  fi  fi
1487    
1488  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1489    #  Set default values if not set by the optfile
1490    #
1491    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1492  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1493    if test ! "x$BASH" = x ; then
1494        # add a trailing space so that it works within the Makefile syntax (see below)
1495        BASH="$BASH "
1496    fi
1497  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1498      cat <<EOF 1>&2      cat <<EOF 1>&2
1499    
# Line 831  Error: no Fortran compiler: please speci Line 1504  Error: no Fortran compiler: please speci
1504  EOF  EOF
1505      exit 1      exit 1
1506  fi  fi
1507    if test "x$CC" = x ; then
1508        CC=cc
1509    #     cat <<EOF 1>&2
1510    # Error: no C compiler: please specify using one of the following:
1511    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1512    #   2) the "-cc=XXX" command-line option
1513    #   3) the "./genmake_local" file
1514    # EOF
1515    #     exit 1
1516    fi
1517  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1518      LINK=$FC      LINK=$FC
1519  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1520  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1521      MAKE="make"      MAKE="make"
1522  fi  fi
1523    if test "x$CPP" = x ; then
1524        CPP=cpp
1525    fi
1526    #EH3 === UGLY ===
1527    #  The following is an ugly little hack to check for $CPP in /lib/ and
1528    #  it should eventually be replaced with a more general function that
1529    #  searches a combo of the user's path and a list of "usual suspects"
1530    #  to find the correct location for binaries such as $CPP.
1531    for i in " " "/lib/" ; do
1532        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1533    done
1534    #EH3 === UGLY ===
1535  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1536  RETVAL=$?  RETVAL=$?
1537  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 856  EOF Line 1548  EOF
1548  else  else
1549      rm -f test_cpp      rm -f test_cpp
1550  fi  fi
1551  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1552  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1553      LN="ln -s"      LN="ln -s"
1554  fi  fi
# Line 874  Error: The command "ln -s" failed -- ple Line 1564  Error: The command "ln -s" failed -- ple
1564  EOF  EOF
1565      exit 1      exit 1
1566  fi  fi
1567    test -L genmake_tlink > /dev/null 2>&1
1568    RETVAL=$?
1569    if test "x$RETVAL" = x0 ; then
1570        HAVE_TEST_L=t
1571    fi
1572  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1573    
1574    #  Check for broken *.F/*.f handling and fix if possible
1575    check_for_broken_Ff
1576    
1577    if test ! "x$MPI" = x ; then
1578          echo "  Turning on MPI cpp macros"
1579          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1580    fi
1581    if test ! "x$OMP" = x ; then
1582          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1583          FFLAGS="$FFLAGS $OMPFLAG"
1584          F90FLAGS="$F90FLAGS $OMPFLAG"
1585          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1586    fi
1587    
1588    if test ! "x$USE_R4" = x ; then
1589          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1590          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1591    fi
1592    
1593    if test ! "x$TS" = x ; then
1594          echo "  Turning on timing per timestep"
1595          if test ! "x$FOOLAD" = x ; then
1596                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1597          else
1598                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1599          fi
1600          PACKAGES="$PACKAGES showflops"
1601    fi
1602    if test ! "x$PAPIS" = x ; then
1603          echo "  Turning on PAPI flop summary per timestep"
1604          echo "  Please make sure PAPIINC, PAPILIB are defined"
1605          if test ! "x$FOOLAD" = x ; then
1606                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1607          else
1608                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1609          fi
1610          INCLUDES="$INCLUDES $PAPIINC"
1611          LIBS="$LIBS $PAPILIB"
1612          PACKAGES="$PACKAGES showflops"
1613    fi
1614    if test ! "x$PCLS" = x ; then
1615          echo "  Turning on PCL counter summary per timestep"
1616          echo "  Please make sure PCLINC, PCLLIB are defined"
1617          if test ! "x$FOOLAD" = x ; then
1618                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1619          else
1620                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1621          fi
1622          INCLUDES="$INCLUDES $PCLINC"
1623          LIBS="$LIBS $PCLLIB"
1624          PACKAGES="$PACKAGES showflops"
1625    fi
1626    if test ! "x$PAPI" = x ; then
1627          if test ! "x$PAPIS" = x ; then
1628              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1629              echo "  Sticking with PAPI flop summary per timestep!"
1630          else
1631              echo "  Turning on performance analysis with PAPI"
1632              echo "  Please make sure PAPIINC, PAPILIB are defined"
1633              DEFINES="$DEFINES -DUSE_PAPI"
1634              INCLUDES="$INCLUDES $PAPIINC"
1635              LIBS="$LIBS $PAPILIB"
1636          fi
1637    fi
1638    if test ! "x$PCL" = x ; then
1639          if test ! "x$PCLS" = x ; then
1640              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1641              echo "  Sticking with PCL flop summary per timestep!"
1642          else
1643              echo "  Turning on performance analysis with PCL"
1644              echo "  Please make sure PCLINC, PCLLIB are defined"
1645              DEFINES="$DEFINES -DUSE_PCL"
1646              INCLUDES="$INCLUDES $PCLINC"
1647              LIBS="$LIBS $PCLLIB"
1648          fi
1649    fi
1650    if test ! "x$HPMT" = x ; then
1651          if test ! "x$PAPI" = x ; then
1652              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1653              echo "  Sticking with PAPI!"
1654          else if test ! "x$PCL" = x ; then
1655              echo "  PCL and the HPM Toolkit cannot co-exist!"
1656              echo "  Sticking with PCL!"
1657          else
1658              echo "  Turning on performance analysis with the HPM Toolkit"
1659              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1660              DEFINES="$DEFINES -DUSE_LIBHPM"
1661              INCLUDES="$INCLUDES $HPMTINC"
1662              LIBS="$LIBS $HPMTLIB"
1663          fi
1664          fi
1665    fi
1666    if test ! "x$GSL" = x ; then
1667          echo "  Turning on use of GSL to control floating point calculations"
1668          echo "  Please make sure GSLINC, GSLLIB are defined"
1669          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1670          INCLUDES="$INCLUDES $GSLINC"
1671          LIBS="$LIBS $GSLLIB"
1672    fi
1673    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1674    if test ! "x$USE_EXTENDED_SRC" = x ; then
1675          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1676          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1677    fi
1678    
1679  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1680  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1681  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1682        program hello        program hello
1683        call system('echo hi')        call system('echo hi')
1684        end        end
1685  EOF  EOF
1686  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1687  RETVAL=$?  RETVAL=$?
1688  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1689      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 896  else Line 1695  else
1695  fi  fi
1696  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1697    
1698  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1699  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1700        program hello        program hello
1701        CHARACTER(128) string        CHARACTER*(128) string
1702        string = ' '        string = ' '
1703        call fdate( string )        call fdate( string )
1704        print *, string        print *, string
1705        end        end
1706  EOF  EOF
1707  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1708  RETVAL=$?  RETVAL=$?
1709  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1710      HAVE_FDATE=t      HAVE_FDATE=t
# Line 917  else Line 1716  else
1716  fi  fi
1717  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1718    
1719  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1720    cat > genmake_tcomp.$FS <<EOF
1721          program hello
1722          REAL*4 ACTUAL, TARRAY(2)
1723          EXTERNAL ETIME
1724          REAL*4 ETIME
1725          actual = etime( tarray )
1726          print *, tarray
1727          end
1728    EOF
1729    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1730    RETVAL=$?
1731    if test "x$RETVAL" = x0 ; then
1732        HAVE_ETIME=t
1733        DEFINES="$DEFINES -DHAVE_ETIME"
1734        echo "yes"
1735    else
1736        HAVE_ETIME=
1737        echo "no"
1738    fi
1739    rm -f genmake_tcomp*
1740    
1741    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1742  check_HAVE_CLOC  check_HAVE_CLOC
1743  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1744      echo "yes"      echo "yes"
1745  else  else
1746      echo "no"      echo "no"
1747        if test "x$EMBED_SRC" = xt ; then
1748            echo "    WARNING: you requested file embedding but it has"
1749            echo "      been disabled since C code cannot be called"
1750            EMBED_SRC=
1751        fi
1752    fi
1753    rm -f genmake_t*
1754    
1755    printf "  Can we unlimit the stack size using $FC...  "
1756    check_HAVE_SETRLSTK
1757    if test "x$HAVE_SETRLSTK" = xt ; then
1758        echo "yes"
1759    else
1760        echo "no"
1761  fi  fi
1762  rm -f genmake_t*  rm -f genmake_t*
1763    
1764  echo -n "  Can we create NetCDF-enabled binaries...  "  printf "  Can we register a signal handler using $FC...  "
1765    check_HAVE_SIGREG
1766    if test "x$HAVE_SIGREG" = xt ; then
1767        echo "yes"
1768    else
1769        echo "no"
1770    fi
1771    rm -f genmake_t*
1772    
1773    printf "  Can we use stat() through C calls...  "
1774    check_HAVE_STAT
1775    if test "x$HAVE_STAT" != x ; then
1776        echo "yes"
1777    else
1778        echo "no"
1779    fi
1780    rm -f genmake_t*
1781    
1782    printf "  Can we create NetCDF-enabled binaries...  "
1783  check_netcdf_libs  check_netcdf_libs
1784  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1785      echo "yes"      echo "yes"
1786  else  else
1787      echo "no"      echo "no"
1788  fi  fi
1789    DEFINES="$DEFINES $IGNORE_TIME"
1790    
1791    if test "x$EMBED_SRC" = xt ; then
1792        build_embed_encode
1793    fi
1794    if test "x$EMBED_SRC" = xt ; then
1795        ENABLE="$ENABLE embed_files"
1796    fi
1797    
1798    
1799  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1800  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1801  for d in $MODS ; do  for d in $MODS ; do
1802      if test ! -d $d ; then      if test ! -d $d ; then
1803          echo          echo
1804          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1805          exit 1          exit 1
1806      else      else
1807          echo -n " $d"          printf "$d "
1808          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1809          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1810      fi      fi
1811  done  done
1812  echo  echo
1813    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1814  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1815      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1816  fi  fi
1817    
1818  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1819      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1820        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1821          EXEDIR=../exe          EXEDIR=../exe
1822      else      else
1823          EXEDIR=.          EXEDIR=.
# Line 973  if test "x${TOOLSDIR}" = x ; then Line 1832  if test "x${TOOLSDIR}" = x ; then
1832      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1833  fi  fi
1834  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1835      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1836      exit 1      exit 1
1837  fi  fi
1838  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1839      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1840        RETVAL=$?
1841        if test "x${RETVAL}" = x0 ; then
1842            S64='$(TOOLSDIR)/set64bitConst.sh'
1843        else
1844            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1845            RETVAL=$?
1846            if test "x${RETVAL}" = x0 ; then
1847                S64='$(TOOLSDIR)/set64bitConst.csh'
1848            else
1849                cat <<EOF
1850    
1851    ERROR: neither of the two default scripts:
1852    
1853        ${TOOLSDIR}/set64bitConst.sh
1854        ${TOOLSDIR}/set64bitConst.csh
1855    
1856      are working so please check paths or specify (with \$S64) a
1857      working version of this script.
1858    
1859    EOF
1860                exit 1
1861            fi
1862        fi
1863  fi  fi
1864  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1865    
1866  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1867    
1868    #  Set Standard Code Directories:
1869    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1870        STANDARDDIRS="eesupp model"
1871    fi
1872    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1873    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1874    ckM=$?
1875    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1876    ckE=$?
1877    if test $ckM = 0 -a $ckE = 1 ; then
1878        STANDARDDIRS="$STANDARDDIRS eesupp"
1879    fi
1880    
1881  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1882  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1883  #  they appear as regular source code  #  they appear as regular source code
# Line 994  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1889  if test -r $ROOTDIR"/eesupp/src/Makefile
1889          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1890      else      else
1891          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1892          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1893          exit 1          exit 1
1894      fi      fi
1895  fi  fi
1896    
1897  #same for exch2  #same for pkg/exch2 and pkg/regrid
1898  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
1899      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1900      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
1901      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1902      if test "x${RETVAL}" = x0 ; then          RETVAL=$?
1903          rm -f make_exch2.errors          if test "x${RETVAL}" = x0 ; then
1904      else              rm -f make_${pdir}.errors
1905          echo "Error: problem encountered while building source files in exch2:"          else
1906          cat make_exch2.errors              echo "Error: problem encountered while building source files in pkg/${pdir}:"
1907          exit 1              cat make_${pdir}.errors 1>&2
1908                exit 1
1909            fi
1910      fi      fi
1911  fi  done
1912    
1913  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1914  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
# Line 1031  fi Line 1928  fi
1928  echo "  getting package dependency info from  $PDEPEND"  echo "  getting package dependency info from  $PDEPEND"
1929  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
1930  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
1931  cat $PDEPEND | sed -e 's/#.*$//g' \  get_pdepend_list $PDEPEND
     | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  
     > ./.pd_tmp  
 RETVAL=$?  
 if test ! "x${RETVAL}" = x0 ; then  
     echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  
     exit 1  
 fi  
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1932    
1933  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1934  #  file should eventually be added so that, for convenience, one can  #  file has been added so that, for convenience, one can specify
1935  #  specify groups of packages using names like "ocean" and "atmosphere".  #  groups of packages using names like "ocean" and "atmosphere".
1936  echo "  checking default package list:  "  echo "  checking default package list:  "
1937  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1938      for i in "." $MODS ; do      for i in "." $MODS ; do
# Line 1068  else Line 1956  else
1956          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1957          RETVAL=$?          RETVAL=$?
1958          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1959              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1960              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1961              exit 1              exit 1
1962          fi          fi
1963          for i in $def ; do          for i in $def ; do
1964              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1965          done          done
1966          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are:$PACKAGES"
1967          expand_pkg_groups          RET=1
1968          echo "    after group expansion packages are:  $PACKAGES"          while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1969            echo "    after group expansion packages are: $PACKAGES"
1970      fi      fi
1971  fi  fi
1972    
1973  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1974    echo "" > ./.tmp_pack
1975    for i in $PACKAGES ; do
1976        echo $i >> ./.tmp_pack
1977    done
1978    for i in `grep  "-" ./.tmp_pack` ; do
1979        j=`echo $i | sed 's/[-]//'`
1980        DISABLE="$DISABLE $j"
1981    done
1982  pack=  pack=
1983  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1984      addit="t"      addit="t"
# Line 1098  PACKAGES="$pack" Line 1995  PACKAGES="$pack"
1995  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1996  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1997  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1998    # Test if each explicitly referenced package exists
1999  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2000      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2001        if test ! -d "$ROOTDIR/pkg/$j" ; then
2002          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
2003          exit 1          exit 1
2004      fi      fi
2005      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2006  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2007  PACKAGES=  PACKAGES=
2008  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2009      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2010  done  done
2011  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2012    echo "    packages are: $PACKAGES"
2013    
2014    #  Check for package MNC: if NetCDF is available, then build the MNC
2015    #  template files ; otherwise, delete mnc from the list of packages.
2016    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2017    RETVAL=$?
2018    if test "x$RETVAL" = x0 ; then
2019        if test "x$HAVE_NETCDF" != xt ; then
2020            cat <<EOF
2021    
2022    *********************************************************************
2023    WARNING: the "mnc" package was enabled but tests failed to compile
2024      NetCDF applications.  Please check that:
2025    
2026      1) NetCDF is correctly installed for this compiler and
2027      2) the LIBS variable (within the "optfile") specifies the correct
2028           NetCDF library to link against.
2029    
2030      Due to this failure, the "mnc" package is now DISABLED.
2031    *********************************************************************
2032    
2033    EOF
2034            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2035            DISABLE="$DISABLE mnc"
2036        else
2037            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2038            RETVAL=$?
2039            if test "x${RETVAL}" = x0 ; then
2040                rm -f make_mnc.errors
2041            else
2042                echo "Error: problem encountered while building source files in pkg/mnc:"
2043                cat make_mnc.errors 1>&2
2044                exit 1
2045            fi
2046        fi
2047    fi
2048    
2049    #  Check for package PROFILES: if NetCDF is not available,
2050    #  then delete profiles from the list of available packages.
2051    echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2052    RETVAL=$?
2053    if test "x$RETVAL" = x0 ; then
2054        if test "x$HAVE_NETCDF" != xt ; then
2055            cat <<EOF
2056    
2057    *********************************************************************
2058    WARNING: the "profiles" package was enabled but tests failed to
2059      compile NetCDF applications.  Please check that:
2060    
2061      1) NetCDF is correctly installed for this compiler and
2062      2) the LIBS variable (within the "optfile") specifies the correct
2063           NetCDF library to link against.
2064    
2065      Due to this failure, the "profiles" package is now DISABLED.
2066    *********************************************************************
2067    
2068    EOF
2069            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2070            DISABLE="$DISABLE profiles"
2071        fi
2072    fi
2073    
2074  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2075  ck=  ck=
# Line 1119  while test "x$ck" != xtt ; do Line 2077  while test "x$ck" != xtt ; do
2077      i=0      i=0
2078      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2079      rtot=$nname      rtot=$nname
2080      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2081    
2082          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2083          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1131  while test "x$ck" != xtt ; do Line 2089  while test "x$ck" != xtt ; do
2089                  pin="t"                  pin="t"
2090              fi              fi
2091          done          done
2092            #  or in the current $STANDARDDIRS list?
2093            for p in $STANDARDDIRS ; do
2094                if test "x$p" = "x$pname" ; then pin="t" ; fi
2095            done
2096    
2097          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2098          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1153  while test "x$ck" != xtt ; do Line 2115  while test "x$ck" != xtt ; do
2115    
2116          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2117          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2118                #echo "   " $pname ": need to add :" $dname
2119              in_dis="f"              in_dis="f"
2120              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2121                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1177  while test "x$ck" != xtt ; do Line 2140  while test "x$ck" != xtt ; do
2140              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2141              exit 1              exit 1
2142          fi          fi
2143          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2144            #i=$(( $i + 1 ))
2145      done      done
2146      ck=$ck"t"      ck=$ck"t"
2147  done  done
2148  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2149  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2150      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2151      if test -d $adr ; then      if test -d $adr ; then
# Line 1196  for i in $PACKAGES ; do Line 2160  for i in $PACKAGES ; do
2160      fi      fi
2161  done  done
2162    
 #  Check for ability to build and use NetCDF  
 echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" = x0 -a "x$HAVE_NETCDF" != xt ; then  
     cat <<EOF  
   
 WARNING: the "mnc" package has been enabled but tests failed to  
   compile and/or execute NetCDF applications.  Please check that:  
   
   1) NetCDF is installed for your compiler and  
   2) the LIBS variable (within the 'optfile") specifies the correct  
        NetCDF library to link against.  
     
 EOF  
 fi  
   
2163  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2164  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2165  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1231  for n in $names ; do Line 2179  for n in $names ; do
2179              fi              fi
2180          done          done
2181          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2182              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2183              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2184          fi          fi
2185      fi      fi
2186  done  done
2187  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2188  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2189      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2190      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2191  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2192    
# Line 1253  for i in $PACKAGES ; do Line 2201  for i in $PACKAGES ; do
2201    
2202  done  done
2203    
2204  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2205  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2206  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2207      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2208          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1312  fi Line 2257  fi
2257    
2258  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2259  #  compiler.  #  compiler.
2260  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2261      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2262  fi  fi
2263  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2264  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2265      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2266      for j in $list_files ; do      for j in $list_files ; do
2267          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2268      done      done
2269  done  done
2270    if test ! "x"$FS = "x.f" ; then
2271        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2272        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2273    fi
2274    
2275  echo  echo
2276  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2277  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2278  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2279      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2280          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2281      fi      fi
2282  done  done
2283    
2284    if test ! "x$DIVA" = x ; then
2285        echo "  Creating the pseudo-MPI include directory"
2286        INCLUDES="-I./mpi_headers $INCLUDES"
2287        rm -rf ./mpi_headers
2288        mkdir -p ./mpi_headers
2289    
2290        if test "x$MPIINCLUDEDIR" = x ; then
2291            if test "x$MPIHOME" = x ; then
2292                MPIHOME='/usr'
2293            fi
2294            MPIINCLUDEDIR='$MPIHOME/include'
2295        fi
2296        
2297        if test -r $MPIINCLUDEDIR/mpif.h ; then
2298            for i in $MPI_HEADER_FILES; do
2299                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2300            done
2301    
2302            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2303        else
2304            echo " We cannot create a copy of mpif.h!"
2305    #       exit -1
2306        fi
2307    fi
2308    
2309  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2310  rm -rf .links.tmp  rm -rf .links.tmp
2311  mkdir .links.tmp  mkdir .links.tmp
2312    touch .links.tmp/foo
2313    if test ! -r ".links.tmp/foo" ; then
2314        echo
2315        echo "ERROR : something is wrong with your directory permissions or"
2316        echo "   your user file-creation mask (\"umask\") since creating a"
2317        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2318        echo "   not working.  Please try setting your umask to something"
2319        echo "   sane such as:"
2320        echo
2321        echo "      umask 0002"
2322        echo
2323        echo "   and please verify that you have the proper permissions for"
2324        echo "   creating sub-directories and then reading files created"
2325        echo "   within them."
2326        echo
2327        exit 1
2328    fi
2329    rm -f .links.tmp/foo
2330    
2331    if test "x$OPENAD" != x ; then
2332        OAD_DONT_COMPILE="/dev/null"
2333        OAD_DONT_TRANSFORM="/dev/null"
2334        OAD_KEEP_ORIGINAL="/dev/null"
2335        OAD_CB2M_FILES="/dev/null"
2336        echo "  looking for dontCompile file:  "
2337        for i in "." $MODS ; do
2338            if test -r $i"/dontCompile" ; then
2339                OAD_DONT_COMPILE=$i"/dontCompile"
2340                echo "     found $OAD_DONT_COMPILE"
2341                break
2342            fi
2343        done
2344        echo "  looking for dontTransform file:  "
2345        for i in "." $MODS ; do
2346            if test -r $i"/dontTransform" ; then
2347                OAD_DONT_TRANSFORM=$i"/dontTransform"
2348                echo "     found $OAD_DONT_TRANSFORM"
2349                break
2350            fi
2351        done
2352        echo "  looking for keepOriginal file:  "
2353        for i in "." $MODS ; do
2354            if test -r $i"/keepOriginal" ; then
2355                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2356                echo "     found $OAD_KEEP_ORIGINAL"
2357                break
2358            fi
2359        done
2360        echo "  looking for cb2mFiles:  "
2361        for i in "." $MODS ; do
2362            if test -r $i"/cb2mFiles" ; then
2363                OAD_CB2M_FILES=$i"/cb2mFiles"
2364                echo "     found $OAD_CB2M_FILES"
2365                break
2366            fi
2367        done
2368        echo "   OpenAD exceptions:  "
2369    fi
2370    
2371  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2372  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2373  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2374  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2375  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2376  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2377  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2378    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2379  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2380  for d in $alldirs ; do  for d in $alldirs ; do
2381      deplist=      deplist=
2382      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2383      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2384        if test "x$OPENAD" != x ; then
2385            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2386        fi
2387      for sf in $sfiles ; do      for sf in $sfiles ; do
2388          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2389              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2390                    ignore_f=f
2391                  case $d/$sf in                  case $d/$sf in
2392                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2393                            ignore_f=t
2394                          ;;                          ;;
2395                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2396                            ignore_f=t
2397                          ;;                          ;;
2398                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2399                            ignore_f=t
2400                            ;;
2401                      ./BUILD_INFO.h)
2402                            ignore_f=t
2403                            ;;
2404                      ./EMBEDDED_FILES.h)
2405                            ignore_f=t
2406                          ;;                          ;;
2407                    *)                    *)
2408                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2409                          deplist="$deplist $sf"                          #  ignore all soft-links
2410                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2411                                ignore_f=t
2412                            else
2413                                touch .links.tmp/$sf
2414                                deplist="$deplist $sf"
2415                            fi
2416                          ;;                          ;;
2417                  esac                  esac
2418                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2419                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2420                      F)                      case $extn in
2421                          echo    " \\"  >> srclist.inc                        F)
2422                          echo -n " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2423                            printf " $sf" >> F77srclist.tmp
2424                            if test "x$OPENAD" != x ; then
2425                                basename=${sf%%.F}
2426                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2427                                if test -z "$isAD" ; then
2428                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2429                                    if test -z "$toBeIgnored" ; then
2430                                        echo    " \\"  >> nonADF77srclist.tmp
2431                                        printf " $sf" >> nonADF77srclist.tmp
2432                                    else
2433                                        echo "    not to be compiled   :  $sf"
2434                                    fi
2435                                else # file is initially listed as an AD file we want to exclude it
2436                                     # or we want to retain the untransformed version
2437                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2438                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2439                                    if test -n "$notToBeTransformed"; then
2440                                        echo "    not to be transformed:  $sf"
2441                                    fi
2442                                    if test -n "$untransformedVersionToBeKept" ; then
2443                                        echo "    original to be kept  :  $sf"
2444                                    fi    
2445                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2446                                        echo    " \\"  >> nonADF77srclist.tmp
2447                                        printf " $sf" >> nonADF77srclist.tmp
2448                                    fi
2449                                fi
2450                            fi
2451                          ;;                          ;;
2452                      F90)                      F90)
2453                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2454                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2455                          ;;                          ;;
2456                      c)                      c)
2457                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2458                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2459                          ;;                          ;;
2460                      h)                      h)
2461                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2462                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2463                          ;;                          ;;
2464                      flow)                      flow)
2465                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2466                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2467                          ;;                          ;;
2468                  esac                     esac
2469                    fi
2470              fi              fi
2471          fi          fi
2472      done      done
2473      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2474          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2475            echo "" >> srclinks.tmp
2476          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2477          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2478          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2479    # This may happen when make thinks that a header file has to be "remade"
2480    # because a module it depends on has changed.  In this case we do nothing.
2481            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2482          fi
2483      fi      fi
2484  done  done
2485  rm -rf .links.tmp  rm -rf .links.tmp
2486  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2487  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2488  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2489  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2490  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2491    echo "" >> ad_flow_files.tmp
2492    
2493    CMDLINE=$0
2494    for xx in "$@" ; do nw=`echo $xx | wc -w`
2495        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2496                            else CMDLINE="$CMDLINE '$xx'" ; fi
2497    done
2498    
2499  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2500      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2501  fi  fi
2502  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2503  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1414  echo "#    $MACHINE" >> $MAKEFILE Line 2505  echo "#    $MACHINE" >> $MAKEFILE
2505  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2506  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2507  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2508  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2509  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2510  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2511    
2512  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2513  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1425  EXE_SVD=$EXECUTABLE"_svd" Line 2516  EXE_SVD=$EXECUTABLE"_svd"
2516  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2517  #  #
2518  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2519  #  #
2520  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2521  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2522  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1445  cat >>$MAKEFILE <<EOF Line 2536  cat >>$MAKEFILE <<EOF
2536  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2537    
2538  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2539  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2540  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2541  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2542  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1462  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2553  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2553  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2554    
2555  # These files are created by Makefile  # These files are created by Makefile
2556  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2557  EOF  EOF
2558    
2559  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2560        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2561    else
2562        echo "EMBEDDED_FILES = " >>$MAKEFILE
2563    fi
2564    
2565  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2566  # Unix ln (link)  # Unix ln (link)
2567  LN = ${LN}  LN = ${LN}
# Line 1481  KPP = ${KPP} Line 2575  KPP = ${KPP}
2575  FC = ${FC}  FC = ${FC}
2576  # Fortran compiler  # Fortran compiler
2577  F90C = ${F90C}  F90C = ${F90C}
2578    # C compiler
2579    CC = ${CC}
2580  # Link editor  # Link editor
2581  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2582    
2583  # Defines for CPP  # Defines for CPP
2584  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1492  INCLUDES = ${INCLUDES} Line 2588  INCLUDES = ${INCLUDES}
2588  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2589  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2590  # Optim./debug for FC  # Optim./debug for FC
2591  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2592  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2593  # Optim./debug for FC  # Optim./debug for FC
2594  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2595  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2596    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2597  # Flags for CC  # Flags for CC
2598  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2599  # Files that should not be optimized  # Files that should not be optimized
2600  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2601  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2602  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2603  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2604  # Name of the Mekfile  # Name of the Mekfile
2605  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2606    
2607  EOF  EOF
2608    
2609  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2610  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2611  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2612  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2613  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2614  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2615    
2616  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2617    
2618  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2619    
2620  .SUFFIXES:  # add definitions for preprocessed sources
2621  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2622    # hence the $FS and $FS90 here.
2623    # for fixed format f90 files we use ff90 or FF90 resp
2624    # but these are not expected to be the original source files
2625    
2626    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2627    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2628    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2629    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2630    echo >> $MAKEFILE
2631    echo '.SUFFIXES:' >> $MAKEFILE
2632    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2633    
2634    cat >>$MAKEFILE <<EOF
2635    
2636  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2637  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2638          @echo Creating \$@ ...          @echo Creating \$@ ...
2639          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2640  depend:  depend:
2641          @make links          @make links
2642          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2643          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2644            -rm -f makedepend.out
2645    
2646    lib: libmitgcmuv.a
2647    
2648    libmitgcmuv.a: \$(OBJFILES)
2649            ar rcv libmitgcmuv.a \$(OBJFILES)
2650            ar d   libmitgcmuv.a main.o
2651    
2652  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2653    
2654  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2655    
2656  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2657          @printf 'running ... '          @printf 'running ... '
2658          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2659    
2660  clean:  clean:
2661          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2662            -rm -rf *.o
2663            -rm -rf *.$FS *.flowdir
2664            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2665  Clean:  Clean:
2666          @make clean          @make clean
2667          @make cleanlinks          @make cleanlinks
2668          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2669          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings genmake_errors
2670            -rm -f make.log run.log f90mkdepend.log *.bak "$MAKEFILE.old"
2671            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2672  CLEAN:  CLEAN:
2673          @make Clean          @make Clean
2674          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2675          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2676          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2677          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2678            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2679            -rm -rf mnc_test_*
2680    
2681  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2682  makefile:  makefile:
2683          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2684  cleanlinks:  cleanlinks:
2685          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2686    
2687  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2688  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2689          @echo Creating \$@ ...          @echo Creating \$@ ...
2690          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2691  AD_CONFIG.h:  AD_CONFIG.h:
2692          @echo Creating \$@ ...          @echo Creating \$@ ...
2693          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2694  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2695          @echo Creating \$@ ...          @echo Creating \$@ ...
2696          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2697    
2698  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2699  .F.f:          @echo Creating \$@ ...
2700    EOF
2701    
2702    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2703    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2704    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2705    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2706    
2707    if test "x$EMBED_SRC" = xt ; then
2708        cat >>$MAKEFILE <<EOF
2709    
2710    decode_files.o : EMBEDDED_FILES.h
2711    
2712    ##  \$(F77_PP_SRC_FILES)
2713    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2714            @echo Creating \$@ ...
2715            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2716            -rm -f all_fF.tar.gz
2717            -gzip all_fF.tar
2718    
2719    EMBEDDED_FILES.h : all_fF.tar.gz
2720            @echo Creating \$@ ...
2721            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2722    
2723    EOF
2724    fi
2725    
2726    cat >>$MAKEFILE <<EOF
2727    
2728    # The normal chain of rules is (  .F - .$FS - .o  )
2729    
2730    ## This nullifies any default implicit rules concerning these two file types:
2731    ## %.o : %.F
2732    
2733    .F.$FS:
2734          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2735  .f.o:  .$FS.o:
2736          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2737  .F90.f90:  .F90.$FS90:
2738            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2739    .FF90.f$FS90:
2740          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2741  .f90.o:  .$FS90.o:
2742          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2743    .f$FS90.o:
2744            cp \$< \$(basename  \$<).f90
2745            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2746  .c.o:  .c.o:
2747          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2748    .flow.flowdir:
2749            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2750    
2751  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2752  .F.p:  .F.p:
2753          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2754  .p.f:  .p.$FS:
2755          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2756    
2757    EOF
2758    
2759  #=========================================  #=========================================
2760  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2761    #===  for TAMC/TAF  ======================
2762    
2763    if test "x$OPENAD" = x ; then
2764    
2765    cat >>$MAKEFILE <<EOF
2766    
2767  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2768  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1609  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2777  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2777  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2778  for i in $ad_vars ; do  for i in $ad_vars ; do
2779      name=$i      name=$i
2780      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2781      eval $t1      eval $t1
2782      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2783      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2784  done  done
2785    
2786  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2787  echo >> $MAKEFILE  echo >> $MAKEFILE
2788  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2789  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2790  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2791      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2792      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2793  done  done
2794  echo >> $MAKEFILE  echo >> $MAKEFILE
2795  rm -f ad_files  rm -f adSrcFiles.tmp
2796    
2797  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2798    
2799  # ... AD ...  # ... AD ...
2800  adall: ad_taf  adall: \$(EXE_AD)
2801  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2802  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2803    
2804  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2805          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2806          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2807          -rm -f ad_config.template          -rm -f ad_config.template
2808          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2809          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2810          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2811    
2812  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2813          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2814          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2815            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2816    
2817  adtafonly:  adtafonly:
2818          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2819          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2820            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2821  ad_taf: ad_taf_output.o \$(OBJFILES)  
2822          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2823            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2824  ad_tamc_output.f: ad_input_code.f  
2825          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2826          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2827            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2828    
2829  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2830          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2831    
2832    adonlyfwd:
2833            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2834    
2835    adtrick:
2836            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2837    
2838  # ... FTL ...  # ... FTL ...
2839  ftlall: ftl_taf  ftlall: ftl_taf
2840  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2841  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2842    
2843  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2844          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2845          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2846          -rm -f ftl_config.template          -rm -f ftl_config.template
2847          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2848          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2849          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2850    
2851  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2852          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2853          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2854            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2855    
2856  ftltafonly:  ftltafonly:
2857          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2858          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2859            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2860    
2861  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2862          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2863    
2864  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2865          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2866          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2867    
2868  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2869          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2870    
2871    
2872  # ... SVD ...  # ... SVD ...
2873  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2874  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2875            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2876    svdall: svd_touch svd_taf
2877    
2878  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2879          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2880    
2881            @echo "--->>> Only COMPILE svd code! <<<---"
2882            @echo "--->>> Assumes you previously <<<---"
2883            @echo "--->>> did make svdtaf        <<<---"
2884    
2885    svd_touch:
2886            @echo "--->>> Only COMPILE svd code! <<<---"
2887            @echo "--->>> Assumes you previously <<<---"
2888            @echo "--->>> did make svdtaf        <<<---"
2889            touch ad_taf_output.$FS ftl_taf_output.$FS
2890            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2891            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2892            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2893            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2894            -rm -f ftl_config.template
2895    
2896  #=========================================  EOF
2897    
2898    fi
2899    
2900    #===  for OpenAD  ========================
2901    
2902    if test "x$OPENAD" != x ; then
2903    
2904    # ============ begin OpenAD specific section ==============
2905    
2906    cat >>$MAKEFILE <<EOF
2907    
2908    # all the source files linked from the various locations:
2909    ALL_LINKED_FILES= \
2910    \$(F77_SRC_FILES) \
2911    \$(C_SRC_FILES) \
2912    \$(H_SRC_FILES) \
2913    \$(F90_SRC_FILES) \
2914    \$(SPECIAL_FILES)
2915    
2916    ifndef OPENADROOT
2917      \$(error "Error:  environment variable OPENADROOT not defined!")
2918    endif
2919    
2920    ifndef XAIFSCHEMAROOT
2921      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2922    endif
2923    
2924    ifndef XAIFBOOSTERROOT
2925      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2926    endif
2927    
2928    EOF
2929    
2930    echo "  Add the source list for common block to module conversion "
2931    echo >> $MAKEFILE
2932    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2933    for i in `cat ${OAD_CB2M_FILES}` ; do
2934      echo    " \\" >> $MAKEFILE
2935      printf " $i" >> $MAKEFILE
2936    done
2937    echo >> $MAKEFILE
2938    
2939    echo "  Add the source list for AD code generation"
2940    echo >> $MAKEFILE
2941    printf "AD_FILES = " >> $MAKEFILE
2942    for i in `cat ${OAD_CB2M_FILES}` ; do
2943      echo    " \\" >> $MAKEFILE
2944      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2945    done
2946    AD_FILES=`cat adSrcFiles.tmp`
2947    for i in $AD_FILES ; do
2948      basename=${i%%.f}
2949      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2950      if test -z "$toBeIgnored" ; then
2951        echo    " \\" >> $MAKEFILE
2952        printf " $i" >> $MAKEFILE
2953      fi
2954    done
2955    echo >> $MAKEFILE
2956    rm -f adSrcFiles.tmp
2957    
2958    cat >>$MAKEFILE <<EOF
2959    
2960    adAll: \$(EXE_AD)
2961    .PHONY: adAll
2962    
2963    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2964    
2965    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2966    
2967    .PHONY: adDepend
2968    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2969            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2970            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2971            -rm -f makedepend.out
2972    
2973    OPENAD_SUPPORT_F90_SRC_FILES = \
2974    w2f__types.F90 \
2975    OAD_active.F90 \
2976    OAD_cp.F90 \
2977    OAD_rev.F90 \
2978    OAD_tape.F90        
2979    
2980    OPENAD_SUPPORT_C_SRC_FILES = \
2981    iaddr.c \
2982    timeRatio.c
2983    
2984    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2985            cat \$^ > \$@
2986    
2987    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2988            cat \$^ > \$@
2989    
2990    f95_test.out: f95_test_mods.f90 f95_test.f90
2991            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2992            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2993    
2994    # the file included below is created by the
2995    # postProcessor and its inclusion sets the
2996    # variable POSTPROCESSEDFILES
2997    # used below. Because the file is made during
2998    # make it won't be read until the second (recursive)
2999    # invocation in the rule below
3000    -include postProcess.make
3001    
3002    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3003    
3004    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3005    
3006    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3007    ifeq (\$(MAKELEVEL),0)
3008            \$(MAKE) adAll
3009    else
3010            touch \$@
3011    endif
3012    
3013    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3014    ifeq (\$(MAKELEVEL),1)
3015            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3016    else
3017            touch \$@
3018    endif
3019    
3020    # makefile debug rule
3021    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3022    .PHONY: openad
3023    
3024    # create the module files
3025    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3026            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3027    
3028    # create the header files
3029    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3030            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3031    
3032    # change everybody else to use the new module files:
3033    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3034            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3035    
3036    # makefile debug rule
3037    small_f: \$(CB2M_F90_PP_SRC_FILES)
3038    .PHONY: small_f
3039    
3040    ad_output.txt: \$(EXE_AD)
3041            @printf 'linking data files ... '
3042            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3043            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3044            @printf 'running ... '
3045            @./\$(EXE_AD) > \$@
3046    
3047    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3048    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3049            cat \$^ > \$@
3050    
3051    # strip all comments and blanks to reduce
3052    # the file size in order to reduce perl's memory requirements
3053    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3054            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3055    
3056    # mfef90 preprocessing
3057    # expand statement functions
3058    # expose mfef90 specific substring handling
3059    # add the w2f__types module
3060    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3061            ./mfef90 -r8 -z -F -N132 \$<
3062            mv \$<.B \$(basename \$<).B
3063            ./whirl2f -openad \$(basename \$<).B
3064            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3065    
3066    # canonicalizer
3067    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3068            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3069    
3070    # F -> WHIRL
3071    # note that the canonicalized version cuts off at col 72
3072    # doing this also for string constants which is ok as long
3073    # as we are in fixed mode and cut of exactly there.
3074    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3075    # characters respectively.
3076    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3077            ./mfef90 -r8 -z -F \$<
3078            mv \$<.B \$@
3079    
3080    # WHIRL -> XAIF
3081    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3082            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3083    
3084    # XAIF -> XAIF'
3085    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3086            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3087    
3088    # XAIF' -> WHIRL'
3089    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3090            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3091    
3092    # WHIRL' -> F'
3093    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3094            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3095    
3096    # insert template directives
3097    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3098            ../OAD_support/insertTemplateDir.bash \$< \$@
3099    
3100    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3101    # postprocess F'
3102    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3103            # the target is a placeholder to signal execution of the rule
3104            touch \$@
3105            # this step also creates the file postProcess.make but we cannot
3106            # name it as the target or else make will try to remake it for
3107            # the include directive above for any rule, e.g. make clean
3108            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3109    
3110    # setup some links
3111    %.xsd:
3112            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3113    
3114    mfef90:
3115            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3116    
3117    # link the support files:
3118    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3119            \$(LN) ../OAD_support/\$@ .
3120    
3121    whirl2xaif xaif2whirl:
3122            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3123    
3124    preProcess.py postProcess.py:
3125            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3126    
3127    whirl2f whirl2f_be:
3128            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3129    
3130    oadDriver:
3131            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3132    
3133    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3134    
3135    # ============ end OpenAD specific section ==============
3136    
3137  EOF  EOF
3138    
3139    fi
3140    
3141    #=========================================
3142    
3143  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3144      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3145  fi  fi
# Line 1715  for i in $KPPFILES ; do Line 3151  for i in $KPPFILES ; do
3151      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3152          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3153      fi      fi
3154      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3155  done  done
3156    
3157  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1725  for i in $NOOPTFILES ; do Line 3161  for i in $NOOPTFILES ; do
3161      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3162          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3163      fi      fi
3164      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3165      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3166  done  done
3167    
# Line 1739  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3175  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3175  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3176    
3177  # Create special header files  # Create special header files
3178  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3179  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3180      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3181  else  else
3182      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3183      RETVAL=$?      RETVAL=$?
3184      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
3185          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1753  else Line 3189  else
3189      fi      fi
3190  fi  fi
3191  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3192      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3193  fi  fi
3194    
3195    
3196  #  Write the "state" for future records  #  Write the "state" for future records
3197  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3198      echo -n "" > genmake_state      printf "" > genmake_state
3199      for i in $gm_state ; do      for i in $gm_state ; do
3200          t1="t2=\$$i"          t1="t2=\$$i"
3201          eval $t1          eval $t1

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