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revision 1.58 by afe, Fri Jan 9 22:08:39 2004 UTC revision 1.99 by edhill, Mon Sep 27 15:49:48 2004 UTC
# Line 37  test_for_string_in_file() { Line 37  test_for_string_in_file() {
37      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
41          grep -i "$strng" $file          grep -i "$strng" $file
42          return 1          return 1
43      fi      fi
# Line 67  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f Makefile  &&  mv -f Makefile Makefile.bak
126        cat <<EOF >> Makefile
127    %.$tfs : %.F
128    .SUFFIXES:
129    genmake_hello.$tfs: genmake_hello.F
130            $LN genmake_hello.F genmake_hello.$tfs
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* Makefile
152        test -f Makefile  &&  mv -f Makefile.bak Makefile
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            cat <<EOF >> genmake_tc.f
185          program test
186          write(*,*) 'test'
187          stop
188          end
189    EOF
190            makedepend genmake_tc.f > /dev/null 2>&1
191            RV1=$?
192            if test "x${RV0}${RV1}" = x00 ; then
193                MAKEDEPEND=makedepend
194            else
195                echo "    a system-default makedepend was not found."
196                
197                #  Try to build the cyrus implementation
198                build_cyrus_makedepend
199                RETVAL=$?
200                if test "x$RETVAL" != x0 ; then
201                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
202                fi
203                rm -f ./genmake_cy_md
204            fi
205        else
206            #  echo "MAKEDEPEND=${MAKEDEPEND}"
207            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
208            RETVAL=$?
209            if test x"$RETVAL" = x0 ; then
210                build_cyrus_makedepend
211            fi
212        fi
213    }
214    
215    
216    build_cyrus_makedepend()  {
217        rm -f ./genmake_cy_md
218        (
219            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
220                &&  ./configure > /dev/null 2>&1  \
221                &&  make > /dev/null 2>&1
222            if test -x ./makedepend.exe ; then
223                $LN ./makedepend.exe ./makedepend
224            fi
225            ./makedepend ifparser.c > /dev/null 2>&1  \
226                &&  echo "true"
227        ) > ./genmake_cy_md
228        grep true ./genmake_cy_md > /dev/null 2>&1
229        RETVAL=$?
230        rm -f ./genmake_cy_md
231        if test "x$RETVAL" = x0 ; then
232            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
233            return 0
234        else
235            echo "WARNING: unable to build cyrus-imapd-makedepend"
236            return 1
237        fi
238    }
239    
240  # Guess possible config options for this host  # Guess possible config options for this host
241  find_possible_configs()  {  find_possible_configs()  {
242    
# Line 80  find_possible_configs()  { Line 245  find_possible_configs()  {
245      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
246      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
247      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
248      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
249        PLATFORM=$tmp3
250        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
251      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
252      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
253            
# Line 100  find_possible_configs()  { Line 267  find_possible_configs()  {
267          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
268      fi      fi
269    
270      # makedepend is not always available      look_for_makedepend
271      if test "x${MAKEDEPEND}" = x ; then  
272        which makedepend >& /dev/null      #================================================================
273        RETVAL=$?      #  look for possible C compilers
274        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
275           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
276           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
277        fi          rm -f ./genmake_hello.c  ./genmake_hello
278            cat >> genmake_hello.c << EOF
279    #include <stdio.h>
280    int main(int argc, char **argv) {
281      printf("Hello!\n");
282      return 0;
283    }
284    EOF
285            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
286            RETVAL=$?
287            if test "x${RETVAL}" = x0 ; then
288                p_CC="$p_CC $c"
289            fi
290        done
291        rm -f ./genmake_hello.c ./genmake_hello
292        if test "x${p_CC}" = x ; then
293            cat 1>&2 <<EOF
294    
295    Error: No C compilers were found in your path.  Please specify one using:
296    
297        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
298        2) the CC or MITGCM_CC environment variables.
299    
300    EOF
301            exit 1
302        else
303            echo "  The possible C compilers found in your path are:"
304            echo "   "$p_CC
305            if test "x$CC" = x ; then
306                CC=`echo $p_CC | $AWK '{print $1}'`
307                echo "  Setting C compiler to: "$CC
308            fi
309      fi      fi
310    
311      # look for possible fortran compilers      #================================================================
312        #  look for possible FORTRAN compilers
313      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
314      p_FC=      p_FC=
315      for c in $tmp ; do      for c in $tmp ; do
# Line 136  Error: No Fortran compilers were found i Line 335  Error: No Fortran compilers were found i
335    
336      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
337      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
338      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
339    
340  EOF  EOF
341          exit 1          exit 1
# Line 145  EOF Line 344  EOF
344          echo "   "$p_FC          echo "   "$p_FC
345          if test "x$FC" = x ; then          if test "x$FC" = x ; then
346              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
347                echo "  Setting FORTRAN compiler to: "$FC
348          fi          fi
349      fi      fi
350    
351      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
352          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
353          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
354              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
355              echo "  The options file:  $p_OF"          fi
356              echo "    appears to match so we'll use it."      fi
357              break  #    echo "  The options file:  $p_OF"
358          fi  #    echo "    appears to match so we'll use it."
359      done  #   for i in $p_FC ; do
360    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
361    #if test -r $p_OF ; then
362    #    OPTFILE=$p_OF
363    #    echo "  The options file:  $p_OF"
364    #    echo "    appears to match so we'll use it."
365    #    break
366    #fi
367    #   done
368      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
369          cat 1>&2 <<EOF          cat 1>&2 <<EOF
370    
# Line 215  get_pdepend_list()  { Line 423  get_pdepend_list()  {
423      . ./.pd_tmp      . ./.pd_tmp
424      rm -f ./.pd_tmp      rm -f ./.pd_tmp
425    
426      echo -n "PNAME = "${}      printf "PNAME = "${}
427  }  }
428    
429    
# Line 229  Usage: "$0" [OPTIONS] Line 437  Usage: "$0" [OPTIONS]
437      -help | --help | -h | --h      -help | --help | -h | --h
438            Print this help message and exit.            Print this help message and exit.
439    
440        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
441          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
442              Use "NAME" as the adoptfile.  By default, the file at
443              "tools/adjoint_options/adjoint_default" will be used.
444    
445      -nooptfile | --nooptfile      -nooptfile | --nooptfile
446        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
447        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 253  Usage: "$0" [OPTIONS] Line 466  Usage: "$0" [OPTIONS]
466        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
467            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
468    
469        -makedepend NAME | -md NAME
470          --makedepend=NAME | -md=NAME
471              Use "NAME" for the MAKEDEPEND program.
472    
473      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
474        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
475            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 289  Usage: "$0" [OPTIONS] Line 506  Usage: "$0" [OPTIONS]
506            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
507            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
508    
509        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
510              Use "NAME" as the C compiler.  By default, genmake
511              will search for a working compiler by trying a list of
512              "usual suspects" such as gcc, c89, cc, etc.
513    
514      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
515            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
516            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
517            is being used.            is being used.
518    
519        -mpi | --mpi
520              Include MPI header files and link to MPI libraries
521        -mpi=PATH | --mpi=PATH
522              Include MPI header files and link to MPI libraries using MPI_ROOT
523              set to PATH. i.e. Include files from \$PATH/include, link to libraries
524              from \$PATH/lib and use binaries from \$PATH/bin.
525    
526        -bash NAME
527              Explicitly specify the Bourne or BASH shell to use
528    
529    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
530    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
531    
# Line 314  EOF Line 546  EOF
546    
547  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
548  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
549    
550        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
551        if test ! "x$FC_NAMEMANGLE" = x ; then
552            return 0
553        fi
554    
555      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
556            
557      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 331  WARNING: Please contact <MITgcm-support@ Line 569  WARNING: Please contact <MITgcm-support@
569  EOF  EOF
570          return 1          return 1
571      fi      fi
572      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
573      RETVAL=$?      RETVAL=$?
574      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
575          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 361  WARNING: Please contact <MITgcm-support@ Line 599  WARNING: Please contact <MITgcm-support@
599  EOF  EOF
600          return 1          return 1
601      fi      fi
602      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
603      RETVAL=$?      RETVAL=$?
604      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
605          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 437  EOF Line 675  EOF
675  }  }
676    
677    
678    check_netcdf_libs()  {
679        echo "" > genmake_tnc.log
680        cat <<EOF > genmake_tnc.for
681          program fgennc
682    #include "netcdf.inc"
683          integer iret, ncid, xid
684          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
685          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
686          iret = nf_def_dim(ncid, 'X', 11, xid)
687          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
688          iret = nf_close(ncid)
689          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
690          end
691    EOF
692        #echo "$CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f"
693        #echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.f"
694        #echo "$LINK -o genmake_tnc.o $LIBS"
695        $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
696            &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
697            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
698        RET_COMPILE=$?
699    
700        #EH3  Remove test program execution for machines that either disallow
701        #EH3  execution or cannot support it (eg. cross-compilers)
702        #EH3
703        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
704        #EH3 RETVAL=$?
705        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
706    
707        if test "x$RET_COMPILE" = x0 ; then
708            HAVE_NETCDF=t
709        else
710            # try again with "-lnetcdf" added to the libs
711            $CPP $DEFINES $INCLUDES genmake_tnc.for > genmake_tnc.f 2>/dev/null  \
712                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.f >> genmake_tnc.log 2>&1  \
713                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
714            RET_COMPILE=$?
715            if test "x$RET_COMPILE" = x0 ; then
716                LIBS="$LIBS -lnetcdf"
717                HAVE_NETCDF=t
718            else
719                cat genmake_tnc.log >> genmake_warnings
720            fi
721        fi
722        rm -f genmake_tnc*
723    }
724    
725    
726    
727    ###############################################################################
728    #   Sequential part of script starts here
729    ###############################################################################
730    
731  #  Set defaults here  #  Set defaults here
732  COMMANDL="$0 $@"  COMMANDL="$0 $@"
733    
# Line 445  LN= Line 736  LN=
736  S64=  S64=
737  KPP=  KPP=
738  FC=  FC=
739    #CC=gcc
740    CPP=
741  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
742  DEFINES=  DEFINES=
743  PACKAGES=  PACKAGES=
744  ENABLE=  ENABLE=
745  DISABLE=  DISABLE=
746  MAKEFILE=  MAKEFILE=
747  MAKEDEPEND=  #MAKEDEPEND=
748  PDEPEND=  PDEPEND=
749  DUMPSTATE=t  DUMPSTATE=t
750  PDEFAULT=  PDEFAULT=
# Line 463  FOPTIM= Line 755  FOPTIM=
755  CFLAGS=  CFLAGS=
756  KFLAGS1=  KFLAGS1=
757  KFLAGS2=  KFLAGS2=
758    #LDADD=
759  LIBS=  LIBS=
760  KPPFILES=  KPPFILES=
761  NOOPTFILES=  NOOPTFILES=
762  NOOPTFLAGS=  NOOPTFLAGS=
763    MPI=
764    MPIPATH=
765    
766  # DEFINES checked by test compilation  # DEFINES checked by test compilation
767  HAVE_SYSTEM=  HAVE_SYSTEM=
768  HAVE_FDATE=  HAVE_FDATE=
769  FC_NAMEMANGLE=  FC_NAMEMANGLE=
770  HAVE_CLOC=  HAVE_CLOC=
771    HAVE_NETCDF=
772    HAVE_ETIME=
773    
774  MODS=  MODS=
775  TOOLSDIR=  TOOLSDIR=
# Line 480  SOURCEDIRS= Line 777  SOURCEDIRS=
777  INCLUDEDIRS=  INCLUDEDIRS=
778  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
779    
780    G2ARGS=
781    BASH=
782  PWD=`pwd`  PWD=`pwd`
783  MAKE=make  MAKE=make
784  AWK=awk  AWK=awk
785  THISHOSTNAME=`hostname`  THISHOST=`hostname`
786  THISCWD=`pwd`  THISCWD=`pwd`
787  THISDATE=`date`  THISDATE=`date`
788    THISUSER=`echo $USER`
789    THISVER=
790  MACHINE=`uname -a`  MACHINE=`uname -a`
791  EXECUTABLE=  EXECUTABLE=
792  EXEHOOK=  EXEHOOK=
# Line 495  IEEE= Line 796  IEEE=
796  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
797      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
798  fi  fi
799    FS=
800    FS90=
801    
802  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
803  AD_OPTFILE=  AD_OPTFILE=
# Line 512  TAMC_EXTRA= Line 815  TAMC_EXTRA=
815    
816  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
817  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
818  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
819    
820  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
821  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
822  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
823  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
824  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
825  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
826    
827  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
828  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 548  for i in . $MODS ; do Line 851  for i in . $MODS ; do
851          break          break
852      fi      fi
853  done  done
854  echo -n "  getting local config information:  "  printf "  getting local config information:  "
855  if test -e $gm_local ; then  if test -f $gm_local ; then
856      echo "using $gm_local"      echo "using $gm_local"
857      . $gm_local      . $gm_local
858      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 570  fi Line 873  fi
873  #done  #done
874  #parse_options  #parse_options
875  ac_prev=  ac_prev=
876  for ac_option ; do  for ac_option in $@ ; do
877    
878        G2ARGS="$G2ARGS \"$ac_option\""
879    
880      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
881      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 613  for ac_option ; do Line 918  for ac_option ; do
918          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
919              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
920                    
921            -bash | --bash)
922                ac_prev=BASH ;;
923            -bash=* | --bash=*)
924                BASH=$ac_optarg ;;
925            
926            -makedepend | --makedepend | -md | --md)
927                ac_prev=MAKEDEPEND ;;
928            -makedepend=* | --makedepend=* | -md=* | --md=*)
929                MAKEDEPEND=$ac_optarg ;;
930            
931          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
932              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
933          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 654  for ac_option ; do Line 969  for ac_option ; do
969  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
970  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
971  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
972                        
973            -cc | --cc)
974                ac_prev=CC ;;
975            -cc=* | --cc=*)
976                CC=$ac_optarg ;;
977            
978          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
979              ac_prev=FC ;;              ac_prev=FC ;;
980          -fc=* | --fc=*)          -fc=* | --fc=*)
981              FC=$ac_optarg ;;              FC=$ac_optarg ;;
982                    
983            -fs | --fs)
984                ac_prev=FS ;;
985            -fs=* | --fs=*)
986                FS=$ac_optarg ;;
987            
988            -fs90 | --fs90)
989                ac_prev=FS90 ;;
990            -fs90=* | --fs90=*)
991                FS90=$ac_optarg ;;
992            
993          -ieee | --ieee)          -ieee | --ieee)
994              IEEE=true ;;              IEEE=true ;;
995          -noieee | --noieee)          -noieee | --noieee)
996              IEEE= ;;              IEEE= ;;
997    
998            -mpi | --mpi)
999                MPI=true ;;
1000            -mpi=* | --mpi=*)
1001                MPIPATH=$ac_optarg
1002                MPI=true ;;
1003                    
1004  #       -jam | --jam)  #       -jam | --jam)
1005  #           JAM=1 ;;  #           JAM=1 ;;
# Line 709  if test -f ./.genmakerc ; then Line 1045  if test -f ./.genmakerc ; then
1045      echo      echo
1046  fi  fi
1047    
1048    #  Find the MITgcm ${ROOTDIR}
1049  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1050      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1051        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1052          ROOTDIR=".."          ROOTDIR=".."
1053      else      else
1054          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1055              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1056                  ROOTDIR=$d                  ROOTDIR=$d
1057                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1058                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1059                  break                  break
1060              fi              fi
# Line 734  if test ! -d ${ROOTDIR} ; then Line 1072  if test ! -d ${ROOTDIR} ; then
1072      exit 1      exit 1
1073  fi  fi
1074    
1075    #  Find the MITgcm ${THISVER}
1076    if test -f "${ROOTDIR}/doc/tag-index" ; then
1077        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1078    fi
1079    
1080  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1081  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1082      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 750  if test "x$OPTFILE" != xNONE ; then Line 1093  if test "x$OPTFILE" != xNONE ; then
1093          . "$OPTFILE"          . "$OPTFILE"
1094          RETVAL=$?          RETVAL=$?
1095          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1096              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1097              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1098              exit 1              exit 1
1099          fi          fi
# Line 763  if test "x$OPTFILE" != xNONE ; then Line 1106  if test "x$OPTFILE" != xNONE ; then
1106      fi      fi
1107  fi  fi
1108    
1109    #  Check for broken systems that cannot correctly distinguish *.F and *.f files
1110    # check_for_broken_Ff
1111    
1112  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:  "
1113  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1114      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
# Line 777  if test "x${AD_OPTFILE}" != xNONE ; then Line 1123  if test "x${AD_OPTFILE}" != xNONE ; then
1123          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1124          RETVAL=$?          RETVAL=$?
1125          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1126              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1127              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1128              exit 1              exit 1
1129          fi          fi
# Line 790  if test "x${AD_OPTFILE}" != xNONE ; then Line 1136  if test "x${AD_OPTFILE}" != xNONE ; then
1136      fi      fi
1137  fi  fi
1138    
1139  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1140  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1141    if test ! "x$BASH" = x ; then
1142        # add a trailing space so that it works within the Makefile syntax (see below)
1143        BASH="$BASH "
1144    fi
1145  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1146      cat <<EOF 1>&2      cat <<EOF 1>&2
1147    
# Line 802  Error: no Fortran compiler: please speci Line 1152  Error: no Fortran compiler: please speci
1152  EOF  EOF
1153      exit 1      exit 1
1154  fi  fi
1155    if test "x$CC" = x ; then
1156        CC=cc
1157    #     cat <<EOF 1>&2
1158    # Error: no C compiler: please specify using one of the following:
1159    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1160    #   2) the "-cc=XXX" command-line option
1161    #   3) the "./genmake_local" file
1162    # EOF
1163    #     exit 1
1164    fi
1165  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1166      LINK=$FC      LINK=$FC
1167  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1168  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1169      MAKE="make"      MAKE="make"
1170  fi  fi
1171    if test "x$CPP" = x ; then
1172        CPP=cpp
1173    fi
1174    #EH3 === UGLY ===
1175    #  The following is an ugly little hack to check for $CPP in /lib/ and
1176    #  it should eventually be replaced with a more general function that
1177    #  searches a combo of the user's path and a list of "usual suspects"
1178    #  to find the correct location for binaries such as $CPP.
1179    for i in " " "/lib/" ; do
1180        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1181    done
1182    #EH3 === UGLY ===
1183  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1184  RETVAL=$?  RETVAL=$?
1185  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 827  EOF Line 1196  EOF
1196  else  else
1197      rm -f test_cpp      rm -f test_cpp
1198  fi  fi
1199  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1200  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1201      LN="ln -s"      LN="ln -s"
1202  fi  fi
# Line 847  EOF Line 1214  EOF
1214  fi  fi
1215  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1216    
1217    #  Check for broken *.F/*.f handling and fix if possible
1218    check_for_broken_Ff
1219    
1220    if test ! "x$MPI" = x ; then
1221          echo "  Turning on MPI cpp macros"
1222          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1223    fi
1224    
1225  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1226  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1227  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1228        program hello        program hello
1229        call system('echo hi')        call system('echo hi')
# Line 867  else Line 1241  else
1241  fi  fi
1242  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1243    
1244  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1245  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1246        program hello        program hello
1247        CHARACTER(128) string        CHARACTER(128) string
# Line 888  else Line 1262  else
1262  fi  fi
1263  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1264    
1265  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1266    cat > genmake_tcomp.f <<EOF
1267          program hello
1268          REAL*4 ACTUAL, TARRAY(2)
1269          EXTERNAL ETIME
1270          REAL*4 ETIME
1271          actual = etime( tarray )
1272          print *, tarray
1273          end
1274    EOF
1275    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
1276    RETVAL=$?
1277    if test "x$RETVAL" = x0 ; then
1278        HAVE_ETIME=t
1279        DEFINES="$DEFINES -DHAVE_ETIME"
1280        echo "yes"
1281    else
1282        HAVE_ETIME=
1283        echo "no"
1284    fi
1285    rm -f genmake_tcomp*
1286    
1287    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1288  check_HAVE_CLOC  check_HAVE_CLOC
1289  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1290      echo "yes"      echo "yes"
# Line 897  else Line 1293  else
1293  fi  fi
1294  rm -f genmake_t*  rm -f genmake_t*
1295    
1296    printf "  Can we create NetCDF-enabled binaries...  "
1297    check_netcdf_libs
1298    if test "x$HAVE_NETCDF" != x ; then
1299        echo "yes"
1300    else
1301        echo "no"
1302    fi
1303    
1304    
1305  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1306  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1307  for d in $MODS ; do  for d in $MODS ; do
1308      if test ! -d $d ; then      if test ! -d $d ; then
1309          echo          echo
1310          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1311          exit 1          exit 1
1312      else      else
1313          echo -n " $d"          printf " $d"
1314          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1315          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1316      fi      fi
# Line 921  if test "x${PLATFORM}" = x ; then Line 1325  if test "x${PLATFORM}" = x ; then
1325  fi  fi
1326    
1327  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1328      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | awk '{print $NR}'`
1329        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1330          EXEDIR=../exe          EXEDIR=../exe
1331      else      else
1332          EXEDIR=.          EXEDIR=.
# Line 936  if test "x${TOOLSDIR}" = x ; then Line 1341  if test "x${TOOLSDIR}" = x ; then
1341      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1342  fi  fi
1343  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1344      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1345      exit 1      exit 1
1346  fi  fi
1347  if test "x$S64" = x ; then  if test "x$S64" = x ; then
# Line 957  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1362  if test -r $ROOTDIR"/eesupp/src/Makefile
1362          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1363      else      else
1364          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1365          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1366          exit 1          exit 1
1367      fi      fi
1368  fi  fi
# Line 970  if test -r $ROOTDIR"/pkg/exch2/Makefile" Line 1375  if test -r $ROOTDIR"/pkg/exch2/Makefile"
1375      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1376          rm -f make_exch2.errors          rm -f make_exch2.errors
1377      else      else
1378          echo "Error: problem encountered while building source files in exch2:"        cat make_exch2.errors          echo "Error: problem encountered while building source files in exch2:"
1379            cat make_exch2.errors 1>&2
1380          exit 1          exit 1
1381      fi      fi
1382  fi  fi
# Line 1030  else Line 1436  else
1436          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1437          RETVAL=$?          RETVAL=$?
1438          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1439              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1440              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1441              exit 1              exit 1
1442          fi          fi
# Line 1038  else Line 1444  else
1444              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1445          done          done
1446          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1447          expand_pkg_groups          RET=1
1448            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1449          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1450      fi      fi
1451  fi  fi
1452    
1453  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1454    for i in $PACKAGES ; do
1455        echo $i >> ./.tmp_pack
1456    done
1457    for i in `grep  "-" ./.tmp_pack` ; do
1458        j=`echo $i | sed 's/[-]//'`
1459        DISABLE="$DISABLE $j"
1460    done
1461  pack=  pack=
1462  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1463      addit="t"      addit="t"
# Line 1060  PACKAGES="$pack" Line 1474  PACKAGES="$pack"
1474  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1475  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1476  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1477    # Test if each explicitly referenced package exists
1478  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1479      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1480        if test ! -d "$ROOTDIR/pkg/$j" ; then
1481          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1482          exit 1          exit 1
1483      fi      fi
1484      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1485  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1486  PACKAGES=  PACKAGES=
1487  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1488      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1489  done  done
1490    rm -f ./.tmp_pack
1491  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1492    
1493  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1139  while test "x$ck" != xtt ; do Line 1554  while test "x$ck" != xtt ; do
1554              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1555              exit 1              exit 1
1556          fi          fi
1557          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1558            #i=$(( $i + 1 ))
1559      done      done
1560      ck=$ck"t"      ck=$ck"t"
1561  done  done
# Line 1158  for i in $PACKAGES ; do Line 1574  for i in $PACKAGES ; do
1574      fi      fi
1575  done  done
1576    
1577    #  Build MNC templates and check for ability to build and use NetCDF
1578    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1579    RETVAL=$?
1580    if test "x$RETVAL" = x0 ; then
1581        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1582        RETVAL=$?
1583        if test "x${RETVAL}" = x0 ; then
1584            rm -f make_mnc.errors
1585        else
1586            echo "Error: problem encountered while building source files in pkg/mnc:"
1587            cat make_mnc.errors 1>&2
1588            exit 1
1589        fi
1590        if test "x$HAVE_NETCDF" != xt ; then
1591            cat <<EOF
1592    
1593    *********************************************************************
1594    WARNING: the "mnc" package was enabled but tests failed to compile
1595      NetCDF applications.  Please check that:
1596    
1597      1) NetCDF is correctly installed for this compiler and
1598      2) the LIBS variable (within the "optfile") specifies the correct
1599           NetCDF library to link against.
1600    
1601      Due to this failure, the "mnc" package is now DISABLED.
1602    *********************************************************************
1603    
1604    EOF
1605            temp=`echo $PACKAGES | sed -e 's/mnc//g'`
1606            PACKAGES=$temp
1607        fi
1608    fi
1609    
1610  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1611  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
# Line 1270  for i in $SOURCEDIRS ; do Line 1718  for i in $SOURCEDIRS ; do
1718      done      done
1719  done  done
1720    
1721    
1722  echo  echo
1723  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1724  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1725  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1726      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1727          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1728      fi      fi
1729  done  done
# Line 1286  rm -rf .links.tmp Line 1733  rm -rf .links.tmp
1733  mkdir .links.tmp  mkdir .links.tmp
1734  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1735  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1736  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1737  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1738  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1739  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1740  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1741  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1742  for d in $alldirs ; do  for d in $alldirs ; do
1743      deplist=      deplist=
# Line 1306  for d in $alldirs ; do Line 1753  for d in $alldirs ; do
1753                          ;;                          ;;
1754                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
1755                          ;;                          ;;
1756                      ./BUILD_INFO.h)
1757                            ;;
1758                    *)                    *)
1759                          touch .links.tmp/$sf                          touch .links.tmp/$sf
1760                          deplist="$deplist $sf"                          deplist="$deplist $sf"
# Line 1315  for d in $alldirs ; do Line 1764  for d in $alldirs ; do
1764                  case $extn in                  case $extn in
1765                      F)                      F)
1766                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1767                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1768                          ;;                          ;;
1769                      F90)                      F90)
1770                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1771                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1772                          ;;                          ;;
1773                      c)                      c)
1774                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1775                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1776                          ;;                          ;;
1777                      h)                      h)
1778                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1779                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1780                          ;;                          ;;
1781                      flow)                      flow)
1782                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1783                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1784                          ;;                          ;;
1785                  esac                  esac
1786              fi              fi
# Line 1351  echo "" >> f90srclist.inc Line 1800  echo "" >> f90srclist.inc
1800  echo "" >> hlist.inc  echo "" >> hlist.inc
1801  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1802    
1803  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1804      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1805  fi  fi
1806  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1360  echo "#    $MACHINE" >> $MAKEFILE Line 1809  echo "#    $MACHINE" >> $MAKEFILE
1809  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1810  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1811  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1812  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1813  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1814  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1815    
1816  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
1817  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1408  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 1857  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1857  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1858    
1859  # These files are created by Makefile  # These files are created by Makefile
1860  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1861    
1862  EOF  EOF
1863    
# Line 1427  KPP = ${KPP} Line 1876  KPP = ${KPP}
1876  FC = ${FC}  FC = ${FC}
1877  # Fortran compiler  # Fortran compiler
1878  F90C = ${F90C}  F90C = ${F90C}
1879    # C compiler
1880    CC = ${CC}
1881  # Link editor  # Link editor
1882  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1883    
1884  # Defines for CPP  # Defines for CPP
1885  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1460  cat csrclist.inc      >> $MAKEFILE Line 1911  cat csrclist.inc      >> $MAKEFILE
1911  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1912  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1913  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1914  echo               >> $MAKEFILE  echo >> $MAKEFILE
1915  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
1916  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
1917  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1918    echo >> $MAKEFILE
1919    echo '.SUFFIXES:' >> $MAKEFILE
1920    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
1921  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1922  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
1923    
1924  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1925    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
1926  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1927  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1928          @echo Creating \$@ ...          @echo Creating \$@ ...
1929          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1930  depend:  depend:
1931          @make links          @make links
1932          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1933          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1934            -rm -f makedepend.out
1935    
1936  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1937    
# Line 1491  output.txt: \$(EXECUTABLE) Line 1942  output.txt: \$(EXECUTABLE)
1942          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1943    
1944  clean:  clean:
1945          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
1946  Clean:  Clean:
1947          @make clean          @make clean
1948          @make cleanlinks          @make cleanlinks
# Line 1502  CLEAN: Line 1953  CLEAN:
1953          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1954          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1955          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1956          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
1957    
1958  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1959  makefile:  makefile:
1960          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
1961  cleanlinks:  cleanlinks:
1962          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1963    
1964  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
1965  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
1966          @echo Creating \$@ ...          @echo Creating \$@ ...
1967          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1968  AD_CONFIG.h:  AD_CONFIG.h:
1969          @echo Creating \$@ ...          @echo Creating \$@ ...
1970          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1971  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
1972          @echo Creating \$@ ...          @echo Creating \$@ ...
1973          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
1974    
1975  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
1976  .F.f:          @echo Creating \$@ ...
1977    EOF
1978    
1979    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
1980    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
1981    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
1982    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
1983    
1984    cat >>$MAKEFILE <<EOF
1985    
1986    # The normal chain of rules is (  .F - .$FS - .o  )
1987    
1988    %.o : %.F
1989    
1990    .F.$FS:
1991          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1992  .f.o:  .$FS.o:
1993          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1994  .F90.f90:  .F90.$FS90:
1995          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1996  .f90.o:  .$FS90.o:
1997          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1998  .c.o:  .c.o:
1999          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2000    
2001  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2002  .F.p:  .F.p:
2003          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2004  .p.f:  .p.$FS:
2005          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2006    
2007  #=========================================  #=========================================
# Line 1563  done Line 2028  done
2028    
2029  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2030  echo >> $MAKEFILE  echo >> $MAKEFILE
2031  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2032  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2033  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2034      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2035      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2036  done  done
2037  echo >> $MAKEFILE  echo >> $MAKEFILE
2038  rm -f ad_files  rm -f ad_files
# Line 1580  adtaf: ad_taf_output.f Line 2045  adtaf: ad_taf_output.f
2045  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
2046    
2047  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2048          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2049          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2050          -rm -f ad_config.template          -rm -f ad_config.template
2051          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1612  ftltaf: ftl_taf_output.f Line 2077  ftltaf: ftl_taf_output.f
2077  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
2078    
2079  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
2080          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2081          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2082          -rm -f ftl_config.template          -rm -f ftl_config.template
2083          @make \$(F77FILES)          @make \$(F77FILES)
# Line 1661  for i in $KPPFILES ; do Line 2126  for i in $KPPFILES ; do
2126      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2127          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2128      fi      fi
2129      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2130  done  done
2131    
2132  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1671  for i in $NOOPTFILES ; do Line 2136  for i in $NOOPTFILES ; do
2136      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2137          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2138      fi      fi
2139      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2140      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2141  done  done
2142    
# Line 1685  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2150  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2150  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2151    
2152  # Create special header files  # Create special header files
2153  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2154  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2155      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2156  else  else
2157      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2158      RETVAL=$?      RETVAL=$?
2159      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
2160          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1699  else Line 2164  else
2164      fi      fi
2165  fi  fi
2166  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2167      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2168  fi  fi
2169    
2170    
2171  #  Write the "state" for future records  #  Write the "state" for future records
2172  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2173      echo -n "" > genmake_state      printf "" > genmake_state
2174      for i in $gm_state ; do      for i in $gm_state ; do
2175          t1="t2=\$$i"          t1="t2=\$$i"
2176          eval $t1          eval $t1

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