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revision 1.57 by edhill, Tue Dec 9 18:58:24 2003 UTC revision 1.220 by jmc, Fri Jun 3 19:53:45 2011 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199  }  }
200    
201  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 206  test_for_string_in_file() {
206      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
207      RETVAL=$?      RETVAL=$?
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
210          grep -i "$strng" $file          grep -i "$strng" $file
211          return 1          exit 99
212      fi      fi
213      return 0      return 0
214  }  }
# Line 48  test_for_string_in_file() { Line 217  test_for_string_in_file() {
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 59  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 67  expand_pkg_groups() { Line 235  expand_pkg_groups() {
235          done          done
236          PACKAGES=$new_packages          PACKAGES=$new_packages
237          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
238            return $matched
239      else      else
240          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241      fi      fi
242  }  }
243    
244  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246    check_for_broken_Ff()  {
247        #  Do we have defaults for $FS and/or $FS90 ?
248        tfs=f
249        tfs9=f90
250        if test "x$FS" != x ; then
251            tfs="$FS"
252        fi
253        if test "x$FS90" != x ; then
254            tfs9="$FS90"
255        fi
256    
257      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
258      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
259      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
260      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`        write(*,*) 'hi'
261      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        stop
262      PLATFORM=$tmp2        end
263      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  EOF
264      echo "  The platform appears to be:  $PLATFORM"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
       
     echo "test" > test  
     ln -s ./test link  
265      RETVAL=$?      RETVAL=$?
266      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
267          LN="ln -s"          if test "x$FS" = x ; then
268      else              FS='for'
269          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
270          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
271          exit 1          else
272                cat <<EOF 2>&1
273    ERROR: Your file system cannot distinguish between *.F and *.f files
274      (fails the "cp" test) and this program cannot find a suitable
275      replacement extension.  Please try a different build environment or
276      contact the <MITgcm-support@mitgcm.org> list for help.
277    
278    EOF
279                exit -1
280            fi
281            return
282      fi      fi
283      rm -f test link      rm -f genmake_hello.*
284    
285      if test "x$CPP" = x ; then      #  Check the ability of ${MAKE} and ${LN} to use the current set
286          CPP="cpp -traditional -P"      #  of extensions.
287        cat <<EOF >> genmake_hello.F
288          program hello
289          write(*,*) 'hi'
290          stop
291          end
292    EOF
293        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
294        cat <<EOF >> $MAKEFILE
295    .SUFFIXES:
296    .SUFFIXES: .$tfs .F
297    .F.$tfs:
298            $LN \$< \$@
299    EOF
300        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
301        RETVAL=$?
302        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303            if test "x$FS" = x ; then
304                FS='for'
305                FS90='fr9'
306                check_for_broken_Ff
307            else
308                cat <<EOF 2>&1
309    ERROR: Your file system cannot distinguish between *.F and *.f files
310      (fails the "make/ln" test) and this program cannot find a suitable
311      replacement extension.  Please try a different build environment or
312      contact the <MITgcm-support@mitgcm.org> list for help.
313    
314    EOF
315                exit -1
316                return
317            fi
318      fi      fi
319        rm -f genmake_hello.* $MAKEFILE
320        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
321    
322      # makedepend is not always available      #  If we make it here, use the extensions
323        FS=$tfs
324        FS90=$tfs9
325        return
326    }
327    
328    look_for_makedepend()  {
329    
330        #  The "original" makedepend is part of the Imake system that is
331        #  most often distributed with XFree86 or with an XFree86 source
332        #  package.  As a result, many machines (eg. generic Linux) do not
333        #  have a system-default "makedepend" available.  For those
334        #  systems, we have two fall-back options:
335        #
336        #    1) a makedepend implementation shipped with the cyrus-imapd
337        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
338        #
339        #    2) a known-buggy xmakedpend shell script
340        #
341        #  So the choices are, in order:
342        #
343        #    1) use the user-specified program
344        #    2) use a system-wide default
345        #    3) locally build and use the cyrus implementation
346        #    4) fall back to the buggy local xmakedpend script
347        #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
362            fi
363        fi
364      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
365        which makedepend >& /dev/null          which makedepend > /dev/null 2>&1
366        RETVAL=$?          RV0=$?
367        if test "x${RETVAL}" = x1 ; then          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
368           echo "    makedepend was not found. Using xmakedpend instead."          #  echo 'MAKEFILE="'$MAKEFILE'"'
369           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          cat <<EOF >> $MAKEFILE
370        fi  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
371    #
372    #   Some "makedepend" implementations will die if they cannot
373    #   find a Makefile -- so this file is here to gives them an
374    #   empty one to find and parse.
375    EOF
376            cat <<EOF >> genmake_tc.f
377          program test
378          write(*,*) 'test'
379          stop
380          end
381    EOF
382            makedepend genmake_tc.f > /dev/null 2>&1
383            RV1=$?
384            test -f $MAKEFILE  &&  rm -f $MAKEFILE
385            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
386            if test "x${RV0}${RV1}" = x00 ; then
387                MAKEDEPEND=makedepend
388                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
389            else
390                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
391                #  Try to build the cyrus implementation
392                build_cyrus_makedepend
393                RETVAL=$?
394                if test "x$RETVAL" != x0 ; then
395                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
396                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
397                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
398                fi
399            fi
400      fi      fi
401    }
402    
403      # look for possible fortran compilers  build_cyrus_makedepend()  {
404      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
405      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
406        rm -f ./genmake_cy_md
407        (
408            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
409                &&  ./configure > /dev/null 2>&1  \
410                &&  make > /dev/null 2>&1
411            if test -x ./makedepend.exe ; then
412                $LN ./makedepend.exe ./makedepend
413            fi
414            ./makedepend ifparser.c > /dev/null 2>&1  \
415                &&  echo "true"
416        ) > ./genmake_cy_md
417        grep true ./genmake_cy_md > /dev/null 2>&1
418        RETVAL=$?
419        rm -f ./genmake_cy_md
420        if test "x$RETVAL" = x0 ; then
421            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
422            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
423            return 0
424        else
425            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
426            return 1
427        fi
428    }
429    
430    build_embed_encode()
431    {
432        printf "  building the embed-encode utility...  "
433        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
434            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
435                echo
436                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
437                echo
438                EMBED_SRC=f
439                return 1
440            fi
441            clist="cc gcc c89 $CC"
442            for ic in $clist ; do
443                comm="$ic -o encode_files encode_files.c"
444                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
445                RETVAL=$?
446                if test "x$RETVAL" = x0 ; then
447                    echo "OK"
448                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
449                    return 0
450                fi
451            done
452            echo
453            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
454            echo "      so it has been disabled"
455            echo
456            EMBED_SRC=f
457            return 1
458        fi
459        echo "OK"
460        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
461    }
462    
463    #  look for possible C compilers
464    look_for_C_compilers() {
465        echo >> $LOGFILE
466        echo "running: look_for_C_compilers()" >> $LOGFILE
467        rm -f ./genmake_hello.c  ./genmake_hello
468        cat >> genmake_hello.c << EOF
469    #include <stdio.h>
470    int main(int argc, char **argv) {
471      printf("Hello!\n");
472      return 0;
473    }
474    EOF
475        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
476        p_CC=
477      for c in $tmp ; do      for c in $tmp ; do
478          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
479          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
480            $COMM >> $LOGFILE 2>&1
481            RETVAL=$?
482            if test "x${RETVAL}" = x0 ; then
483                echo " $c test successful" >> $LOGFILE
484                p_CC="$p_CC $c"
485            fi
486        done
487        rm -f ./genmake_hello.c ./genmake_hello
488        if test "x${p_CC}" = x ; then
489            cat 1>&2 <<EOF
490    
491    Error: No C compilers were found in your path.  Please specify one using:
492    
493        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
494        2) the CC or MITGCM_CC environment variables.
495    
496    EOF
497            exit 1
498        else
499            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
500            if test "x$CC" = x ; then
501                CC=`echo $p_CC | $AWK '{print $1}'`
502                echo "  Setting C compiler to: "$CC
503            fi
504        fi
505        echo " --> set CC='$CC'" >> $LOGFILE
506    }
507    
508    # Guess possible config options for this host
509    find_possible_optfile()  {
510    
511        echo >> $LOGFILE
512        echo "running: find_possible_optfile()" >> $LOGFILE
513        tmp1=`uname`"_"`uname -m`
514        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
515        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
516        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
517        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
518        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
519        PLATFORM=$tmp3
520        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
521        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
522        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
523    
524        #================================================================
525        #  look for possible FORTRAN compilers
526        echo "  look for possible FORTRAN compilers" >> $LOGFILE
527        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
528        p_FC=
529        rm -f ./genmake_hello.f
530        cat >> genmake_hello.f <<EOF
531        program hello        program hello
532        do i=1,3        do i=1,3
533          print *, 'hello world : ', i          print *, 'hello world : ', i
534        enddo        enddo
535        end        end
536  EOF  EOF
537          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
538            COMM="$f -o genmake_hello genmake_hello.f"
539            echo $COMM >> $LOGFILE
540            $COMM >> $LOGFILE 2>&1
541          RETVAL=$?          RETVAL=$?
542          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
543              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
544                p_FC="$p_FC $f"
545          fi          fi
546      done      done
547      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
548      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
549          cat 1>&2 <<EOF          cat 1>&2 <<EOF
550    
# Line 136  Error: No Fortran compilers were found i Line 552  Error: No Fortran compilers were found i
552    
553      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
554      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
555      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
556    
557  EOF  EOF
558          exit 1          exit 1
559      else      else
560          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
561          echo "   "$p_FC      fi
562          if test "x$FC" = x ; then  
563              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
564          fi      #  that has a correctly-named optfile
565        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
566            for i in $p_FC ; do
567                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
568                if test -r $OPTFILE ; then
569                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
570                    break
571                fi
572            done
573        fi
574    
575        if test "x$OPTFILE" = x ; then
576            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
577            if test ! -r $OPTFILE ; then
578                 echo "  I looked for the file "$OPTFILE" but did not find it"
579            fi
580      fi      fi
581    
     for i in $p_FC ; do  
         p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
         if test -r $p_OF ; then  
             OPTFILE=$p_OF  
             echo "  The options file:  $p_OF"  
             echo "    appears to match so we'll use it."  
             break  
         fi  
     done  
582      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
583          cat 1>&2 <<EOF          cat 1>&2 <<EOF
584    
# Line 172  Error: No options file was found in:  $R Line 594  Error: No options file was found in:  $R
594  EOF  EOF
595          exit 1          exit 1
596      fi      fi
597        
598  #     # look for possible MPI libraries  #     # look for possible MPI libraries
599  #     mpi_libs=  #     mpi_libs=
600  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 191  EOF Line 613  EOF
613  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
614  #           a=`cat out`  #           a=`cat out`
615  #           for i in $a ; do  #           for i in $a ; do
616  #               case $i in  #               case $i in
617  #                   -*)  #                   -*)
618  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
619  #               esac  #               esac
# Line 201  EOF Line 623  EOF
623  #       fi  #       fi
624  #       rm -f test.f out  #       rm -f test.f out
625  #     fi  #     fi
   
626  }  }
627    
628  #  Parse the package dependency information  #  Parse the package dependency information
# Line 210  get_pdepend_list()  { Line 631  get_pdepend_list()  {
631      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
632      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
633      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
634          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
635          > ./.pd_tmp          > ./.pd_tmp
636        RETVAL=$?
637        if test ! "x${RETVAL}" = x0 ; then
638          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
639          exit 1
640        fi
641      . ./.pd_tmp      . ./.pd_tmp
642      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
643  }  }
644    
645  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
646  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
647    
648        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
649        if test ! "x$FC_NAMEMANGLE" = x ; then
650            return 0
651        fi
652        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
653    
654      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
655        
656      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
657  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
658  EOF  EOF
659      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
660        echo ' '$COMM >> $LOGFILE
661        $COMM >> $LOGFILE 2>&1
662      RETVAL=$?      RETVAL=$?
663      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
664          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
665          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
666    
667  WARNING: C test compile fails   WARNING: C test compile fails
668  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
669  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
670  EOF  EOF
671          return 1          return 1
672      fi      fi
673      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
674      RETVAL=$?      RETVAL=$?
675      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
676          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
677          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
678    
679  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
680  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
681  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
682  EOF  EOF
683          return 1          return 1
684      fi      fi
685      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
686        subroutine tcall( string )        subroutine tcall( string )
687        character*(*) string        character*(*) string
688        call tsub( string )        call tsub( string )
689        end        end
690  EOF  EOF
691      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
692        echo ' '$COMM >> $LOGFILE
693        $COMM >> $LOGFILE 2>&1
694      RETVAL=$?      RETVAL=$?
695      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
696          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
697          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
698    
699  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
700  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
701  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
702  EOF  EOF
703          return 1          return 1
704      fi      fi
705      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
706      RETVAL=$?      RETVAL=$?
707      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
708          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
709          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
710    
711  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
712  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
713  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
714  EOF  EOF
715          return 1          return 1
716      fi      fi
# Line 395  EOF Line 736  EOF
736    
737      #  cleanup the testing files      #  cleanup the testing files
738      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
739    
740        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
741    }
742    
743  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
744        echo >> $LOGFILE
745        echo "running: check_HAVE_CLOC()" >> $LOGFILE
746      get_fortran_c_namemangling      get_fortran_c_namemangling
747      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
748  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 759  void FC_NAMEMANGLE(cloc) ( double *curti
759   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
760  }  }
761  EOF  EOF
762      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
763        echo $COMM >> $LOGFILE
764        $COMM >> $LOGFILE 2>&1
765      RET_C=$?      RET_C=$?
766      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
767        program hello        program hello
768        Real*8 wtime        REAL*8 wtime
769        external cloc        external cloc
770        call cloc(wtime)        call cloc(wtime)
771        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
772        end program hello        end
773  EOF  EOF
774      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
775        echo $COMM >> $LOGFILE
776        $COMM >> $LOGFILE 2>&1
777      RET_F=$?      RET_F=$?
778      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
779      RETVAL=$?      RETVAL=$?
780      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
781          HAVE_CLOC=t          HAVE_CLOC=t
782          DEFINES="$DEFINES -DHAVE_CLOC"          DEFINES="$DEFINES -DHAVE_CLOC"
783      fi      fi
784      rm -f genmake_tc*      rm -f genmake_tc*
785        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
786    }
787    
788    check_HAVE_SIGREG()  {
789        if test ! "x$HAVE_SIGREG" = x ; then
790            return
791        fi
792        echo >> $LOGFILE
793        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
794        get_fortran_c_namemangling
795        cat <<EOF > genmake_tc_1.c
796    $FC_NAMEMANGLE
797    #include <stdlib.h>
798    #include <stdio.h>
799    #include <signal.h>
800    #include <errno.h>
801    #include <ucontext.h>
802    
803    int * ip;
804    
805    static void killhandler(
806        unsigned int sn, siginfo_t  si, struct ucontext *sc )
807    {
808        *ip = *ip + 1;
809        return;
810    }
811    
812    void FC_NAMEMANGLE(sigreg) (int * aip)
813    {
814        struct sigaction s;
815        ip = aip;
816        s.sa_flags = SA_SIGINFO;
817        s.sa_sigaction = (void *)killhandler;
818        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
819            printf("Sigaction returned error = %d\n", errno);
820            exit(0);
821        }
822        return;
823    }
824    EOF
825        COMM="$CC $CFLAGS -c genmake_tc_1.c"
826        echo $COMM >> $LOGFILE
827        $COMM >> $LOGFILE 2>&1
828        RET_C=$?
829        cat <<EOF > genmake_tc_2.$FS
830          program hello
831          integer anint
832          common /iv/ anint
833          external sigreg
834          call sigreg(anint)
835          end
836    EOF
837        cat genmake_tc_2.$FS >> $LOGFILE
838        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
839        echo $COMM >> $LOGFILE
840        $COMM >> $LOGFILE 2>&1
841        RETVAL=$?
842        if test "x$RETVAL" = x0 ; then
843            HAVE_SIGREG=t
844            DEFINES="$DEFINES -DHAVE_SIGREG"
845        fi
846        rm -f genmake_tc*
847        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
848    }
849    
850    check_HAVE_SETRLSTK()  {
851        if test "x$HAVE_SETRLSTK" = xt ; then
852            DEFINES="$DEFINES -DHAVE_SETRLSTK"
853            return
854        fi  
855        if test ! "x$HAVE_SETRLSTK" = x ; then
856            return
857        fi
858        echo >> $LOGFILE
859        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
860        get_fortran_c_namemangling
861        cat <<EOF > genmake_tc_1.c
862    $FC_NAMEMANGLE
863    #include <sys/time.h>
864    #include <sys/resource.h>
865    #include <unistd.h>
866    void FC_NAMEMANGLE(setrlstk) ()
867    {
868        struct rlimit rls;
869        rls.rlim_cur = RLIM_INFINITY;
870        rls.rlim_max = RLIM_INFINITY;
871        setrlimit(RLIMIT_STACK, &rls);
872        return;
873    }
874    EOF
875        COMM="$CC $CFLAGS -c genmake_tc_1.c"
876        echo $COMM >> $LOGFILE
877        $COMM >> $LOGFILE 2>&1
878        RET_C=$?
879        cat <<EOF > genmake_tc_2.$FS
880          program hello
881          external setrlstk
882          call setrlstk()
883          end
884    EOF
885        cat genmake_tc_2.$FS >> $LOGFILE
886        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
887        echo $COMM >> $LOGFILE
888        $COMM >> $LOGFILE 2>&1
889        RETVAL=$?
890        if test "x$RETVAL" = x0 ; then
891            HAVE_SETRLSTK=t
892            DEFINES="$DEFINES -DHAVE_SETRLSTK"
893        fi
894        rm -f genmake_tc*
895        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
896    }
897    
898    check_HAVE_STAT()  {
899        echo >> $LOGFILE
900        echo "running: check_HAVE_STAT()" >> $LOGFILE
901        get_fortran_c_namemangling
902        cat <<EOF > genmake_tc_1.c
903    $FC_NAMEMANGLE
904    #include <stdio.h>
905    #include <stdlib.h>
906    #include <unistd.h>
907    #include <sys/stat.h>
908    #include <sys/types.h>
909    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
910    {
911        char name[512];
912        struct stat astat;
913    
914        name[0] = 'a'; name[1] = '\0';
915        if (! stat(name, &astat))
916            *nbyte = (int)(astat.st_size);
917        else
918            *nbyte = -1;
919    }
920    EOF
921        COMM="$CC $CFLAGS -c genmake_tc_1.c"
922        echo $COMM >> $LOGFILE
923        $COMM >> genmake_tc.log 2>&1
924        RET_C=$?
925        cat <<EOF > genmake_tc_2.$FS
926          program hello
927          integer nbyte
928          call tfsize(nbyte)
929          print *," HELLO WORLD", nbyte
930          end
931    EOF
932        cat genmake_tc_2.$FS >> $LOGFILE
933        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
934        echo $COMM >> $LOGFILE
935        $COMM >> genmake_tc.log 2>&1
936        RETVAL=$?
937        if test "x$RETVAL" = x0 ; then
938            HAVE_STAT=t
939            DEFINES="$DEFINES -DHAVE_STAT"
940        fi
941        rm -f genmake_tc*
942        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
943    }
944    
945    check_netcdf_libs()  {
946        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
947            return
948        fi
949        echo >> $LOGFILE
950        echo "running: check_netcdf_libs()" >> $LOGFILE
951        cat <<EOF > genmake_tnc.F
952          program fgennc
953    #include "netcdf.inc"
954    EOF
955        if test ! "x$MPI" = x ; then
956            echo '#include "mpif.h"' >> genmake_tnc.F
957        fi
958        cat <<EOF >> genmake_tnc.F
959          integer iret, ncid, xid
960          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
961          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
962          iret = nf_def_dim(ncid, 'X', 11, xid)
963          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
964          iret = nf_close(ncid)
965          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
966          end
967    EOF
968        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
969        cat genmake_tnc.F >> genmake_tnc.log
970        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
971        RET_CPP=f
972        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
973        echo "$COMM" >> genmake_tnc.log
974        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
975        if test "x$RET_CPP" = xf ; then
976            echo "  WARNING: CPP failed to pre-process the netcdf test." \
977                >> genmake_tnc.log
978            echo "    Please check that \$INCLUDES is properly set." \
979                >> genmake_tnc.log
980        fi
981        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
982        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
983        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
985        RET_COMPILE=$?
986        cat genmake_tnc.log >> $LOGFILE
987    
988        #EH3  Remove test program execution for machines that either disallow
989        #EH3  execution or cannot support it (eg. cross-compilers)
990        #EH3
991        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
992        #EH3 RETVAL=$?
993        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
994    
995        if test "x$RET_COMPILE" = x0 ; then
996            HAVE_NETCDF=t
997            echo "check_netcdf: successful" >> $LOGFILE
998        else
999            # try again with "-lnetcdf" added to the libs
1000            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1001            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1002            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1003            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1004            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1005                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1006                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1007            RET_COMPILE=$?
1008            echo >> $LOGFILE
1009            cat genmake_tnc.log >> $LOGFILE
1010            if test "x$RET_COMPILE" = x0 ; then
1011                LIBS="$LIBS -lnetcdf"
1012                HAVE_NETCDF=t
1013                echo "check_netcdf: successful" >> $LOGFILE
1014            else
1015            # try again with "-lnetcdff" added to the libs
1016                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1017                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1018                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1019                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1020                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1021                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1022                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1023                RET_COMPILE=$?
1024                echo >> $LOGFILE
1025                cat genmake_tnc.log >> $LOGFILE
1026                if test "x$RET_COMPILE" = x0 ; then
1027                    LIBS="$LIBS -lnetcdff -lnetcdf"
1028                    HAVE_NETCDF=t
1029                    echo "check_netcdf: successful" >> $LOGFILE
1030                fi
1031            fi
1032        fi
1033        rm -f genmake_tnc*
1034        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1035  }  }
1036    
1037    
1038    ###############################################################################
1039    #   Sequential part of script starts here
1040    ###############################################################################
1041    
1042  #  Set defaults here  #  Set defaults here
1043  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1044    
# Line 444  PLATFORM= Line 1046  PLATFORM=
1046  LN=  LN=
1047  S64=  S64=
1048  KPP=  KPP=
1049  FC=  #FC=
1050    #CC=gcc
1051    #CPP=
1052  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1053  DEFINES=  DEFINES=
1054  PACKAGES=  PACKAGES=
1055  ENABLE=  ENABLE=
1056  DISABLE=  DISABLE=
1057  MAKEFILE=  # MAKEFILE=
1058  MAKEDEPEND=  # MAKEDEPEND=
1059  PDEPEND=  PKG_DEPEND=
1060  DUMPSTATE=t  PKG_GROUPS=
1061  PDEFAULT=  DUMPSTATE=f
1062  OPTFILE=  OPTFILE=
1063  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1064  FFLAGS=  FFLAGS=
1065  FOPTIM=  FOPTIM=
1066    FEXTRAFLAGS=
1067    USE_EXTENDED_SRC=
1068    EXTENDED_SRC_FLAG=
1069    GET_FC_VERSION=
1070  CFLAGS=  CFLAGS=
1071  KFLAGS1=  KFLAGS1=
1072  KFLAGS2=  KFLAGS2=
1073    #LDADD=
1074  LIBS=  LIBS=
1075  KPPFILES=  KPPFILES=
1076  NOOPTFILES=  NOOPTFILES=
1077  NOOPTFLAGS=  NOOPTFLAGS=
1078    MPI=
1079    MPIPATH=
1080    OMP=
1081    OMPFLAG=
1082    USE_R4=
1083    TS=
1084    PAPIS=
1085    PCLS=
1086    FOOLAD=
1087    PAPI=
1088    PCL=
1089    HPMT=
1090    GSL=
1091    DEVEL=
1092    HAVE_TEST_L=
1093    
1094  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1095  HAVE_SYSTEM=  HAVE_SYSTEM=
1096  HAVE_FDATE=  HAVE_FDATE=
1097  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1098  HAVE_CLOC=  HAVE_CLOC=
1099    # HAVE_SETRLSTK=
1100    HAVE_STAT=
1101    HAVE_NETCDF=
1102    HAVE_ETIME=
1103    IGNORE_TIME=
1104    
1105  MODS=  MODS=
1106  TOOLSDIR=  TOOLSDIR=
# Line 480  SOURCEDIRS= Line 1108  SOURCEDIRS=
1108  INCLUDEDIRS=  INCLUDEDIRS=
1109  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1110    
1111    G2ARGS=
1112    BASH=
1113  PWD=`pwd`  PWD=`pwd`
1114  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1115  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1116  THISHOSTNAME=`hostname`  EMBED_SRC=
1117    THISHOST=`hostname`
1118  THISCWD=`pwd`  THISCWD=`pwd`
1119  THISDATE=`date`  THISDATE=`date`
1120    THISUSER=`echo $USER`
1121    THISVER=
1122  MACHINE=`uname -a`  MACHINE=`uname -a`
1123  EXECUTABLE=  EXECUTABLE=
1124  EXEHOOK=  EXEHOOK=
# Line 495  IEEE= Line 1128  IEEE=
1128  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1129      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1130  fi  fi
1131    FS=
1132    FS90=
1133    
1134  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1135  AD_OPTFILE=  AD_OPTFILE=
# Line 509  FTL_TAF_FLAGS= Line 1144  FTL_TAF_FLAGS=
1144  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1145  TAMC_EXTRA=  TAMC_EXTRA=
1146    
   
1147  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1148  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"
1149  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL MPI OMP DUMPSTATE STANDARDDIRS"
1150    
1151  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1152  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1153  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1154  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1155  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1156  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1157    
1158  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1159  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 533  cat <<EOF Line 1167  cat <<EOF
1167    
1168  GENMAKE :  GENMAKE :
1169    
1170  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1171  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1172    or for more detail see the Developer's HOWTO manual at:
1173    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1174    
1175  EOF  EOF
1176    
1177    LOGFILE="genmake.log"
1178    #- clean-up previous genmake logfiles:
1179    rm -f genmake_state genmake_*optfile $LOGFILE
1180    
1181  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1182  gm_local="genmake_local"  gm_local="genmake_local"
1183  for i in . $MODS ; do  printf "  getting local config information:  "
1184      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1185      echo "using $gm_local"      echo "using $gm_local"
1186      . $gm_local      . $gm_local
1187      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 558  else Line 1190  else
1190      echo "none found"      echo "none found"
1191  fi  fi
1192    
1193  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1194  #parse_options  #parse_options
1195  ac_prev=  ac_prev=
1196  for ac_option ; do  for ac_option in "$@" ; do
1197    
1198        G2ARGS="$G2ARGS \"$ac_option\""
1199    
1200      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1201      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 578  for ac_option ; do Line 1203  for ac_option ; do
1203          ac_prev=          ac_prev=
1204          continue          continue
1205      fi      fi
1206        
1207      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1208        
1209      case $ac_option in      case $ac_option in
1210                    
1211          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 599  for ac_option ; do Line 1224  for ac_option ; do
1224              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1225                    
1226          -pdepend | --pdepend)          -pdepend | --pdepend)
1227              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1228          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1229              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1230                    
1231          -pdefault | --pdefault)          -pgroups | --pgroups)
1232              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1233          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1234              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1235                    
1236          -make | --make | -m | --m)          -make | --make | -m | --m)
1237              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1238          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1239              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1240                    
1241            -bash | --bash)
1242                ac_prev=BASH ;;
1243            -bash=* | --bash=*)
1244                BASH=$ac_optarg ;;
1245            
1246            -makedepend | --makedepend | -md | --md)
1247                ac_prev=MAKEDEPEND ;;
1248            -makedepend=* | --makedepend=* | -md=* | --md=*)
1249                MAKEDEPEND=$ac_optarg ;;
1250            
1251          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1252              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1253          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 654  for ac_option ; do Line 1289  for ac_option ; do
1289  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1290  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1291  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1292                        
1293            -cc | --cc)
1294                ac_prev=CC ;;
1295            -cc=* | --cc=*)
1296                CC=$ac_optarg ;;
1297            
1298          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1299              ac_prev=FC ;;              ac_prev=FC ;;
1300          -fc=* | --fc=*)          -fc=* | --fc=*)
1301              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1302                    
1303            -fs | --fs)
1304                ac_prev=FS ;;
1305            -fs=* | --fs=*)
1306                FS=$ac_optarg ;;
1307            
1308            -fs90 | --fs90)
1309                ac_prev=FS90 ;;
1310            -fs90=* | --fs90=*)
1311                FS90=$ac_optarg ;;
1312            
1313            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1314                USE_R4=true ;;
1315    
1316          -ieee | --ieee)          -ieee | --ieee)
1317              IEEE=true ;;              IEEE=true ;;
1318          -noieee | --noieee)          -noieee | --noieee)
1319              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1320            -devel | --devel)
1321                IEEE=true ; DEVEL=true ;;
1322            -gsl | --gsl)
1323                GSL=true ;;
1324    
1325            -ts | --ts)
1326                TS=true ;;
1327            -papis | --papis)
1328                PAPIS=true ;;
1329            -pcls | --pcls)
1330                PCLS=true ;;
1331            -foolad | --foolad)
1332                FOOLAD=true ;;
1333            -papi | --papi)
1334                PAPI=true ;;
1335            -pcl | --pcl)
1336                PCL=true ;;
1337            -hpmt | --hpmt)
1338                HPMT=true ;;
1339    
1340            -mpi | --mpi)
1341                MPI=true ;;
1342            -mpi=* | --mpi=*)
1343                MPIPATH=$ac_optarg
1344                MPI=true ;;
1345                    
1346  #       -jam | --jam)          -omp | --omp)
1347  #           JAM=1 ;;              OMP=true ;;
1348  #       -nojam | --nojam)          -omp=* | --omp=*)
1349  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1350                OMP=true ;;
1351                    
1352          -ds | --ds)          -ds | --ds)
1353              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 682  for ac_option ; do Line 1361  for ac_option ; do
1361              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1362          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1363              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1364            
1365            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1366                IGNORE_TIME="-DIGNORE_TIME" ;;
1367    
1368            -es | --es | -embed-source | --embed-source)
1369                EMBED_SRC=t ;;
1370    
1371          -*)          -*)
1372              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 694  for ac_option ; do Line 1379  for ac_option ; do
1379              ;;              ;;
1380                    
1381      esac      esac
1382        
1383  done  done
1384    
1385  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1386      echo      echo
1387      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1388      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1389      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1390      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1391        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1392        echo "WARNING: ignore \"./.genmakerc\" and continue."
1393      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1394  fi  fi
1395    
1396    #  Find the MITgcm ${ROOTDIR}
1397  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1398      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1399        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1400          ROOTDIR=".."          ROOTDIR=".."
1401      else      else
1402          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1403              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1404                  ROOTDIR=$d                  ROOTDIR=$d
1405                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1406                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1407                  break                  break
1408              fi              fi
1409          done          done
# Line 734  if test ! -d ${ROOTDIR} ; then Line 1420  if test ! -d ${ROOTDIR} ; then
1420      exit 1      exit 1
1421  fi  fi
1422    
1423    #  Find the MITgcm ${THISVER}
1424    version_file="${ROOTDIR}/doc/tag-index"
1425    if test -f $version_file ; then
1426        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1427    #-  remove ./BUILD_INFO.h file if older than version_file
1428        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1429            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1430            rm -f ./BUILD_INFO.h
1431        fi
1432    fi
1433    
1434    if test "x$MAKEFILE" = x ; then
1435        MAKEFILE="Makefile"
1436    fi
1437    
1438  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1439  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1440      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1441          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1442          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1443          find_possible_configs          find_possible_optfile
1444      else      else
1445          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1446      fi      fi
# Line 750  if test "x$OPTFILE" != xNONE ; then Line 1451  if test "x$OPTFILE" != xNONE ; then
1451          . "$OPTFILE"          . "$OPTFILE"
1452          RETVAL=$?          RETVAL=$?
1453          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1454              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1455              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1456              exit 1              exit 1
1457          fi          fi
1458          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1459              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1460          fi          fi
1461      else      else
# Line 777  if test "x${AD_OPTFILE}" != xNONE ; then Line 1478  if test "x${AD_OPTFILE}" != xNONE ; then
1478          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1479          RETVAL=$?          RETVAL=$?
1480          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1481              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1482              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1483              exit 1              exit 1
1484          fi          fi
1485          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1486              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1487          fi          fi
1488      else      else
# Line 790  if test "x${AD_OPTFILE}" != xNONE ; then Line 1491  if test "x${AD_OPTFILE}" != xNONE ; then
1491      fi      fi
1492  fi  fi
1493    
1494  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1495    #  Set default values if not set by the optfile
1496    #
1497    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1498  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1499    if test ! "x$BASH" = x ; then
1500        # add a trailing space so that it works within the Makefile syntax (see below)
1501        BASH="$BASH "
1502    fi
1503  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1504      cat <<EOF 1>&2      cat <<EOF 1>&2
1505    
# Line 802  Error: no Fortran compiler: please speci Line 1510  Error: no Fortran compiler: please speci
1510  EOF  EOF
1511      exit 1      exit 1
1512  fi  fi
1513    if test "x$GET_FC_VERSION" != x ; then
1514      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1515      $FC $GET_FC_VERSION >> $LOGFILE 2>&1
1516      echo "<-- compiler version ----" >> $LOGFILE
1517    fi
1518    
1519    if test "x$CC" = x ; then
1520        look_for_C_compilers
1521    fi
1522    
1523  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1524      LINK=$FC      LINK=$FC
1525  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1526  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1527      MAKE="make"      MAKE="make"
1528  fi  fi
1529    if test "x$CPP" = x ; then
1530        CPP="cpp -traditional -P"
1531    fi
1532    #EH3 === UGLY ===
1533    #  The following is an ugly little hack to check for $CPP in /lib/ and
1534    #  it should eventually be replaced with a more general function that
1535    #  searches a combo of the user's path and a list of "usual suspects"
1536    #  to find the correct location for binaries such as $CPP.
1537    for i in " " "/lib/" ; do
1538        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1539    done
1540    #EH3 === UGLY ===
1541  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1542  RETVAL=$?  RETVAL=$?
1543  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 827  EOF Line 1554  EOF
1554  else  else
1555      rm -f test_cpp      rm -f test_cpp
1556  fi  fi
1557  if test "x$MAKEDEPEND" = x ; then  
1558      MAKEDEPEND=makedepend  look_for_makedepend
1559  fi  
1560    #  Check that soft-link command is set and usable
1561  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1562      LN="ln -s"      LN="ln -s"
1563  fi  fi
# Line 839  RETVAL=$? Line 1567  RETVAL=$?
1567  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1568      cat <<EOF 1>&2      cat <<EOF 1>&2
1569    
1570  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1571    command in the optfile.    command in the optfile.
1572    
1573  EOF  EOF
1574      exit 1      exit 1
1575  fi  fi
1576    test -L genmake_tlink > /dev/null 2>&1
1577    RETVAL=$?
1578    if test "x$RETVAL" = x0 ; then
1579        HAVE_TEST_L=t
1580    fi
1581  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1582    
1583    #  Check for broken *.F/*.f handling and fix if possible
1584    check_for_broken_Ff
1585    
1586    if test ! "x$MPI" = x ; then
1587          echo "  Turning on MPI cpp macros"
1588          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1589    fi
1590    if test ! "x$OMP" = x ; then
1591          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1592          FFLAGS="$FFLAGS $OMPFLAG"
1593          F90FLAGS="$F90FLAGS $OMPFLAG"
1594          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1595    fi
1596    
1597    if test ! "x$USE_R4" = x ; then
1598          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1599          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1600    fi
1601    
1602    if test ! "x$TS" = x ; then
1603          echo "  Turning on timing per timestep"
1604          if test ! "x$FOOLAD" = x ; then
1605                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1606          else
1607                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1608          fi
1609          PACKAGES="$PACKAGES showflops"
1610    fi
1611    if test ! "x$PAPIS" = x ; then
1612          echo "  Turning on PAPI flop summary per timestep"
1613          echo "  Please make sure PAPIINC, PAPILIB are defined"
1614          if test ! "x$FOOLAD" = x ; then
1615                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1616          else
1617                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1618          fi
1619          INCLUDES="$INCLUDES $PAPIINC"
1620          LIBS="$LIBS $PAPILIB"
1621          PACKAGES="$PACKAGES showflops"
1622    fi
1623    if test ! "x$PCLS" = x ; then
1624          echo "  Turning on PCL counter summary per timestep"
1625          echo "  Please make sure PCLINC, PCLLIB are defined"
1626          if test ! "x$FOOLAD" = x ; then
1627                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1628          else
1629                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1630          fi
1631          INCLUDES="$INCLUDES $PCLINC"
1632          LIBS="$LIBS $PCLLIB"
1633          PACKAGES="$PACKAGES showflops"
1634    fi
1635    if test ! "x$PAPI" = x ; then
1636          if test ! "x$PAPIS" = x ; then
1637              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1638              echo "  Sticking with PAPI flop summary per timestep!"
1639          else
1640              echo "  Turning on performance analysis with PAPI"
1641              echo "  Please make sure PAPIINC, PAPILIB are defined"
1642              DEFINES="$DEFINES -DUSE_PAPI"
1643              INCLUDES="$INCLUDES $PAPIINC"
1644              LIBS="$LIBS $PAPILIB"
1645          fi
1646    fi
1647    if test ! "x$PCL" = x ; then
1648          if test ! "x$PCLS" = x ; then
1649              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1650              echo "  Sticking with PCL flop summary per timestep!"
1651          else
1652              echo "  Turning on performance analysis with PCL"
1653              echo "  Please make sure PCLINC, PCLLIB are defined"
1654              DEFINES="$DEFINES -DUSE_PCL"
1655              INCLUDES="$INCLUDES $PCLINC"
1656              LIBS="$LIBS $PCLLIB"
1657          fi
1658    fi
1659    if test ! "x$HPMT" = x ; then
1660          if test ! "x$PAPI" = x ; then
1661              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1662              echo "  Sticking with PAPI!"
1663          else if test ! "x$PCL" = x ; then
1664              echo "  PCL and the HPM Toolkit cannot co-exist!"
1665              echo "  Sticking with PCL!"
1666          else
1667              echo "  Turning on performance analysis with the HPM Toolkit"
1668              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1669              DEFINES="$DEFINES -DUSE_LIBHPM"
1670              INCLUDES="$INCLUDES $HPMTINC"
1671              LIBS="$LIBS $HPMTLIB"
1672          fi
1673          fi
1674    fi
1675    if test ! "x$GSL" = x ; then
1676          echo "  Turning on use of GSL to control floating point calculations"
1677          echo "  Please make sure GSLINC, GSLLIB are defined"
1678          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1679          INCLUDES="$INCLUDES $GSLINC"
1680          LIBS="$LIBS $GSLLIB"
1681    fi
1682    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1683    if test ! "x$USE_EXTENDED_SRC" = x ; then
1684          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1685          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1686    fi
1687    
1688  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1689  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1690  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1691        program hello        program hello
1692        call system('echo hi')        call system('echo hi')
1693        end        end
1694  EOF  EOF
1695  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1696  RETVAL=$?  RETVAL=$?
1697  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1698      HAVE_SYSTEM=t      HAVE_SYSTEM=t
1699      DEFINES="$DEFINES -DHAVE_SYSTEM"      DEFINES="$DEFINES -DHAVE_SYSTEM"
1700      echo "yes"      echo "yes"
1701  else  else
1702      HAVE_SYSTEM=      HAVE_SYSTEM=
1703        echo "no"
1704    fi
1705    rm -f genmake_tcomp*
1706    
1707    printf "  Do we have the fdate() command using $FC...  "
1708    cat > genmake_tcomp.$FS <<EOF
1709          program hello
1710          CHARACTER*(128) string
1711          string = ' '
1712          call fdate( string )
1713          print *, string
1714          end
1715    EOF
1716    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1717    RETVAL=$?
1718    if test "x$RETVAL" = x0 ; then
1719        HAVE_FDATE=t
1720        DEFINES="$DEFINES -DHAVE_FDATE"
1721        echo "yes"
1722    else
1723        HAVE_FDATE=
1724      echo "no"      echo "no"
1725  fi  fi
1726  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1727    
1728  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1729  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1730        program hello        program hello
1731        CHARACTER(128) string        REAL*4 ACTUAL, TARRAY(2)
1732        string = ' '        EXTERNAL ETIME
1733        call fdate( string )        REAL*4 ETIME
1734        print *, string        actual = etime( tarray )
1735          print *, tarray
1736        end        end
1737  EOF  EOF
1738  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1739  RETVAL=$?  RETVAL=$?
1740  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1741      HAVE_FDATE=t      HAVE_ETIME=t
1742      DEFINES="$DEFINES -DHAVE_FDATE"      DEFINES="$DEFINES -DHAVE_ETIME"
1743      echo "yes"      echo "yes"
1744  else  else
1745      HAVE_FDATE=      HAVE_ETIME=
1746      echo "no"      echo "no"
1747  fi  fi
1748  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1749    
1750  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1751  check_HAVE_CLOC  check_HAVE_CLOC
1752  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1753      echo "yes"      echo "yes"
1754  else  else
1755      echo "no"      echo "no"
1756        if test "x$EMBED_SRC" = xt ; then
1757            echo "    WARNING: you requested file embedding but it has"
1758            echo "      been disabled since C code cannot be called"
1759            EMBED_SRC=
1760        fi
1761    fi
1762    rm -f genmake_t*
1763    
1764    printf "  Can we unlimit the stack size using $FC...  "
1765    check_HAVE_SETRLSTK
1766    if test "x$HAVE_SETRLSTK" = xt ; then
1767        echo "yes"
1768    else
1769        echo "no"
1770  fi  fi
1771  rm -f genmake_t*  rm -f genmake_t*
1772    
1773    printf "  Can we register a signal handler using $FC...  "
1774    check_HAVE_SIGREG
1775    if test "x$HAVE_SIGREG" = xt ; then
1776        echo "yes"
1777    else
1778        echo "no"
1779    fi
1780    rm -f genmake_t*
1781    
1782    printf "  Can we use stat() through C calls...  "
1783    check_HAVE_STAT
1784    if test "x$HAVE_STAT" != x ; then
1785        echo "yes"
1786    else
1787        echo "no"
1788    fi
1789    rm -f genmake_t*
1790    
1791    printf "  Can we create NetCDF-enabled binaries...  "
1792    check_netcdf_libs
1793    if test "x$HAVE_NETCDF" != x ; then
1794        echo "yes"
1795    else
1796        echo "no"
1797    fi
1798    DEFINES="$DEFINES $IGNORE_TIME"
1799    
1800    if test "x$EMBED_SRC" = xt ; then
1801        build_embed_encode
1802    fi
1803    if test "x$EMBED_SRC" = xt ; then
1804        ENABLE="$ENABLE embed_files"
1805    fi
1806    
1807  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1808  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1809  for d in $MODS ; do  for d in $MODS ; do
1810      if test ! -d $d ; then      if test ! -d $d ; then
1811          echo          echo
1812          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1813          exit 1          exit 1
1814      else      else
1815          echo -n " $d"          printf "$d "
1816          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1817          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1818      fi      fi
1819  done  done
1820  echo  echo
1821    
1822  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1823      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1824  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1825    
1826  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1827      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1828        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1829          EXEDIR=../exe          EXEDIR=../exe
1830      else      else
1831          EXEDIR=.          EXEDIR=.
# Line 936  if test "x${TOOLSDIR}" = x ; then Line 1840  if test "x${TOOLSDIR}" = x ; then
1840      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1841  fi  fi
1842  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1843      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1844      exit 1      exit 1
1845  fi  fi
1846  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1847      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1848        RETVAL=$?
1849        if test "x${RETVAL}" = x0 ; then
1850            S64='$(TOOLSDIR)/set64bitConst.sh'
1851        else
1852            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1853            RETVAL=$?
1854            if test "x${RETVAL}" = x0 ; then
1855                S64='$(TOOLSDIR)/set64bitConst.csh'
1856            else
1857                cat <<EOF
1858    
1859    ERROR: neither of the two default scripts:
1860    
1861        ${TOOLSDIR}/set64bitConst.sh
1862        ${TOOLSDIR}/set64bitConst.csh
1863    
1864      are working so please check paths or specify (with \$S64) a
1865      working version of this script.
1866    
1867    EOF
1868                exit 1
1869            fi
1870        fi
1871  fi  fi
1872  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1873    
1874  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1875    
1876    #  Set Standard Code Directories:
1877    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1878        STANDARDDIRS="eesupp model"
1879    fi
1880    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1881    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1882    ckM=$?
1883    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1884    ckE=$?
1885    if test $ckM = 0 -a $ckE = 1 ; then
1886        STANDARDDIRS="$STANDARDDIRS eesupp"
1887    fi
1888    
1889  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1890  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1891  #  they appear as regular source code  #  they appear as regular source code
1892  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1893      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1894      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1895        ) > make_eesupp.errors 2>&1
1896      RETVAL=$?      RETVAL=$?
1897      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1898          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1899      else      else
1900          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1901          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1902          exit 1          exit 1
1903      fi      fi
1904  fi  fi
1905    
1906    #same for pkg/exch2 and pkg/regrid
1907    for pdir in exch2 regrid ; do
1908        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1909            echo "  Making source files in pkg/${pdir} from templates"
1910            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1911            ) > make_${pdir}.errors 2>&1
1912            RETVAL=$?
1913            if test "x${RETVAL}" = x0 ; then
1914                rm -f make_${pdir}.errors
1915            else
1916                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1917                cat make_${pdir}.errors 1>&2
1918                exit 1
1919            fi
1920        fi
1921    done
1922    
1923  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1924  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1925      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1926      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1927          PDEPEND=$tmp  fi
1928      else  if  test "x${PKG_DEPEND}" = x ; then
1929          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1930          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1931  else  else
1932      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1933          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1934          exit 1          exit 1
1935      fi      fi
1936        echo "  getting package dependency info from  $PKG_DEPEND"
1937    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1938        get_pdepend_list $PKG_DEPEND
1939  fi  fi
1940  echo "  getting package dependency info from  $PDEPEND"  
1941  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1942  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1943  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1944      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1945      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1946  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1947  if test ! "x${RETVAL}" = x0 ; then  fi
1948      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1949      exit 1          echo "Warning:  No package groups information was specified."
1950            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1951    else
1952        if test ! -r ${PKG_GROUPS} ; then
1953            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1954            exit 1
1955        fi
1956        echo "  getting package groups info from      $PKG_GROUPS"
1957  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
1958    
1959  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
1960  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
1961  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
1962  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
1963      for i in "." $MODS ; do      for i in "." $MODS ; do
1964          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
1965                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
1966                  break                  break
1967          fi          fi
1968      done      done
1969  fi  fi
1970  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
1971      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
1972  fi      if test "x${PKG_GROUPS}" = x ; then
1973  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1974      echo "    default packages file disabled"          exit 1
1975        fi
1976  else  else
1977      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1978          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1979            exit 1
1980      else      else
1981          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
1982          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1983          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1984          RETVAL=$?          RETVAL=$?
1985          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1986              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
1987              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
1988              exit 1              exit 1
1989          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
1990      fi      fi
1991  fi  fi
1992    for i in $pkg_list ; do
1993        PACKAGES="$PACKAGES $i"
1994    done
1995    echo     "    before group expansion packages are:$PACKAGES"
1996    if test "x${PKG_GROUPS}" != x ; then
1997        RET=1
1998        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1999        echo "    after group expansion packages are: $PACKAGES"
2000    fi
2001    
2002  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2003    echo "" > ./.tmp_pack
2004    for i in $PACKAGES ; do
2005        echo $i >> ./.tmp_pack
2006    done
2007    for i in `grep  "-" ./.tmp_pack` ; do
2008        j=`echo $i | sed 's/[-]//'`
2009        DISABLE="$DISABLE $j"
2010    done
2011  pack=  pack=
2012  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2013      addit="t"      addit="t"
# Line 1047  PACKAGES="$pack" Line 2024  PACKAGES="$pack"
2024  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2025  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2026  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2027    # Test if each explicitly referenced package exists
2028  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2029      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2030          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2031          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2032            exit 1
2033      fi      fi
2034      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2035  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2036  PACKAGES=  PACKAGES=
2037  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2038      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2039  done  done
2040  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2041    echo "    packages are: $PACKAGES"
2042    
2043    #  Check for package MNC: if NetCDF is available, then build the MNC
2044    #  template files ; otherwise, delete mnc from the list of packages.
2045    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2046    mnc_in=$?
2047    if test "x$HAVE_NETCDF" != xt ; then
2048        if test "x$mnc_in" = x0 ; then
2049            cat <<EOF
2050    *********************************************************************
2051    WARNING: the "mnc" package was enabled but tests failed to compile
2052      NetCDF applications.  Please check that:
2053    
2054      1) NetCDF is correctly installed for this compiler and
2055      2) the LIBS variable (within the "optfile") specifies the correct
2056           NetCDF library to link against.
2057    
2058      Due to this failure, the "mnc" package is now DISABLED.
2059    *********************************************************************
2060    EOF
2061            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2062            DISABLE="$DISABLE mnc"
2063        else
2064        #  this prevent to add mnc (due to pdepend rules) if not available
2065            DISABLE="$DISABLE mnc"
2066        fi
2067    else
2068        # we have NetCDF, we try to build MNC template files
2069        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2070        RETVAL=$?
2071        if test "x${RETVAL}" = x0 ; then
2072            rm -f make_mnc.errors
2073        else
2074            echo "Error: problem encountered while building source files in pkg/mnc:"
2075            cat make_mnc.errors 1>&2
2076            if test "x$mnc_in" = x0 ; then
2077                exit 1
2078            else
2079                DISABLE="$DISABLE mnc"
2080            fi
2081        fi
2082    fi
2083    
2084    #  Check for package PROFILES: if NetCDF is not available,
2085    #  then delete profiles from the list of available packages.
2086    if test "x$HAVE_NETCDF" != xt ; then
2087        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2088        RETVAL=$?
2089        if test "x$RETVAL" = x0 ; then
2090            cat <<EOF
2091    *********************************************************************
2092    WARNING: the "profiles" package was enabled but tests failed to
2093      compile NetCDF applications.  Please check that:
2094    
2095      1) NetCDF is correctly installed for this compiler and
2096      2) the LIBS variable (within the "optfile") specifies the correct
2097           NetCDF library to link against.
2098    
2099      Due to this failure, the "profiles" package is now DISABLED.
2100    *********************************************************************
2101    EOF
2102            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2103            DISABLE="$DISABLE profiles"
2104        else
2105        #  this prevent to add profiles (due to pdepend rules) if not available
2106            DISABLE="$DISABLE profiles"
2107        fi
2108    fi
2109    
2110  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2111  ck=    echo "  applying package dependency rules"
2112  while test "x$ck" != xtt ; do    ck=
2113      while test "x$ck" != xtt ; do
2114      i=0      i=0
2115      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2116      rtot=$nname      rtot=$nname
2117      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2118    
2119          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2120          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1080  while test "x$ck" != xtt ; do Line 2126  while test "x$ck" != xtt ; do
2126                  pin="t"                  pin="t"
2127              fi              fi
2128          done          done
2129            #  or in the current $STANDARDDIRS list?
2130            for p in $STANDARDDIRS ; do
2131                if test "x$p" = "x$pname" ; then pin="t" ; fi
2132            done
2133    
2134          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2135          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1102  while test "x$ck" != xtt ; do Line 2152  while test "x$ck" != xtt ; do
2152    
2153          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2154          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2155                #echo "   " $pname ": need to add :" $dname
2156              in_dis="f"              in_dis="f"
2157              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2158                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1122  while test "x$ck" != xtt ; do Line 2173  while test "x$ck" != xtt ; do
2173          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2174          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2175              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2176              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2177              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2178              exit 1              exit 1
2179          fi          fi
2180          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2181            #i=$(( $i + 1 ))
2182      done      done
2183      ck=$ck"t"      ck=$ck"t"
2184  done    done
2185  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2186    fi
2187  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2188      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2189      if test -d $adr ; then      if test -d $adr ; then
# Line 1145  for i in $PACKAGES ; do Line 2198  for i in $PACKAGES ; do
2198      fi      fi
2199  done  done
2200    
   
2201  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2202  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2203  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2204  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2205  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2206  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2207  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1165  for n in $names ; do Line 2217  for n in $names ; do
2217              fi              fi
2218          done          done
2219          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2220              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2221              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2222          fi          fi
2223      fi      fi
2224  done  done
2225  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2226  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2227      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2228      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2229  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2230    
2231  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2232      case $i in      case $i in
2233          aim_v23)          aim_v23)
2234              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2235              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
# Line 1187  for i in $PACKAGES ; do Line 2239  for i in $PACKAGES ; do
2239    
2240  done  done
2241    
2242  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2243  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2244  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2245      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2246          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1246  fi Line 2295  fi
2295    
2296  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2297  #  compiler.  #  compiler.
2298  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2299      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2300  fi  fi
2301  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2302    touch adSrcFiles.tmp
2303  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2304      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2305      for j in $list_files ; do      for j in $list_files ; do
2306          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2307      done      done
2308  done  done
2309    if test ! "x"$FS = "x.f" ; then
2310        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2311        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2312    fi
2313    
2314  echo  echo
2315  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2316  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2317  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2318      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2319          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2320      fi      fi
2321  done  done
2322    
2323    if test ! "x$DIVA" = x ; then
2324        echo "  Creating the pseudo-MPI include directory"
2325        INCLUDES="-I./mpi_headers $INCLUDES"
2326        rm -rf ./mpi_headers
2327        mkdir -p ./mpi_headers
2328    
2329        if test "x$MPIINCLUDEDIR" = x ; then
2330            if test "x$MPIHOME" = x ; then
2331                MPIHOME='/usr'
2332            fi
2333            MPIINCLUDEDIR='$MPIHOME/include'
2334        fi
2335    
2336        if test -r $MPIINCLUDEDIR/mpif.h ; then
2337            for i in $MPI_HEADER_FILES; do
2338                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2339            done
2340    
2341            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2342        else
2343            echo " We cannot create a copy of mpif.h!"
2344    #       exit -1
2345        fi
2346    fi
2347    
2348  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2349  rm -rf .links.tmp  rm -rf .links.tmp
2350  mkdir .links.tmp  mkdir .links.tmp
2351    touch .links.tmp/foo
2352    if test ! -r ".links.tmp/foo" ; then
2353        echo
2354        echo "ERROR : something is wrong with your directory permissions or"
2355        echo "   your user file-creation mask (\"umask\") since creating a"
2356        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2357        echo "   not working.  Please try setting your umask to something"
2358        echo "   sane such as:"
2359        echo
2360        echo "      umask 0002"
2361        echo
2362        echo "   and please verify that you have the proper permissions for"
2363        echo "   creating sub-directories and then reading files created"
2364        echo "   within them."
2365        echo
2366        exit 1
2367    fi
2368    rm -f .links.tmp/foo
2369    
2370    if test "x$OPENAD" != x ; then
2371        OAD_DONT_COMPILE="/dev/null"
2372        OAD_DONT_TRANSFORM="/dev/null"
2373        OAD_KEEP_ORIGINAL="/dev/null"
2374        OAD_CB2M_FILES="/dev/null"
2375        echo "  looking for dontCompile file:  "
2376        for i in "." $MODS ; do
2377            if test -r $i"/dontCompile" ; then
2378                OAD_DONT_COMPILE=$i"/dontCompile"
2379                echo "     found $OAD_DONT_COMPILE"
2380                break
2381            fi
2382        done
2383        echo "  looking for dontTransform file:  "
2384        for i in "." $MODS ; do
2385            if test -r $i"/dontTransform" ; then
2386                OAD_DONT_TRANSFORM=$i"/dontTransform"
2387                echo "     found $OAD_DONT_TRANSFORM"
2388                break
2389            fi
2390        done
2391        echo "  looking for keepOriginal file:  "
2392        for i in "." $MODS ; do
2393            if test -r $i"/keepOriginal" ; then
2394                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2395                echo "     found $OAD_KEEP_ORIGINAL"
2396                break
2397            fi
2398        done
2399        echo "  looking for cb2mFiles:  "
2400        for i in "." $MODS ; do
2401            if test -r $i"/cb2mFiles" ; then
2402                OAD_CB2M_FILES=$i"/cb2mFiles"
2403                echo "     found $OAD_CB2M_FILES"
2404                break
2405            fi
2406        done
2407        echo "   OpenAD exceptions:  "
2408    fi
2409    
2410  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2411  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2412  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2413  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2414  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2415  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2416  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2417    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2418  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2419  for d in $alldirs ; do  for d in $alldirs ; do
2420      deplist=      deplist=
2421      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2422      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2423        if test "x$OPENAD" != x ; then
2424            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2425        fi
2426      for sf in $sfiles ; do      for sf in $sfiles ; do
2427          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2428              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2429                    ignore_f=f
2430                  case $d/$sf in                  case $d/$sf in
2431                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2432                            ignore_f=t
2433                          ;;                          ;;
2434                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2435                            ignore_f=t
2436                          ;;                          ;;
2437                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2438                            ignore_f=t
2439                            ;;
2440                      ./BUILD_INFO.h)
2441                            ignore_f=t
2442                            ;;
2443                      ./EMBEDDED_FILES.h)
2444                            ignore_f=t
2445                          ;;                          ;;
2446                    *)                    *)
2447                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2448                          deplist="$deplist $sf"                          #  ignore all soft-links
2449                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2450                                ignore_f=t
2451                            else
2452                                touch .links.tmp/$sf
2453                                deplist="$deplist $sf"
2454                            fi
2455                          ;;                          ;;
2456                  esac                  esac
2457                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2458                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2459                      F)                      case $extn in
2460                          echo    " \\"  >> srclist.inc                        F)
2461                          echo -n " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2462                            printf " $sf" >> F77srclist.tmp
2463                            if test "x$OPENAD" != x ; then
2464                                basename=${sf%%.F}
2465                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2466                                if test -z "$isAD" ; then
2467                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2468                                    if test -z "$toBeIgnored" ; then
2469                                        echo    " \\"  >> nonADF77srclist.tmp
2470                                        printf " $sf" >> nonADF77srclist.tmp
2471                                    else
2472                                        echo "    not to be compiled   :  $sf"
2473                                    fi
2474                                else # file is initially listed as an AD file we want to exclude it
2475                                     # or we want to retain the untransformed version
2476                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2477                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2478                                    if test -n "$notToBeTransformed"; then
2479                                        echo "    not to be transformed:  $sf"
2480                                    fi
2481                                    if test -n "$untransformedVersionToBeKept" ; then
2482                                        echo "    original to be kept  :  $sf"
2483                                    fi
2484                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2485                                        echo    " \\"  >> nonADF77srclist.tmp
2486                                        printf " $sf" >> nonADF77srclist.tmp
2487                                    fi
2488                                fi
2489                            fi
2490                          ;;                          ;;
2491                      F90)                      F90)
2492                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2493                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2494                          ;;                          ;;
2495                      c)                      c)
2496                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2497                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2498                          ;;                          ;;
2499                      h)                      h)
2500                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2501                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2502                          ;;                          ;;
2503                      flow)                      flow)
2504                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2505                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2506                          ;;                          ;;
2507                  esac                     esac
2508                    fi
2509              fi              fi
2510          fi          fi
2511      done      done
2512      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2513          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2514            echo "" >> srclinks.tmp
2515          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2516          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2517          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2518    # This may happen when make thinks that a header file has to be "remade"
2519    # because a module it depends on has changed.  In this case we do nothing.
2520            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2521          fi
2522      fi      fi
2523  done  done
2524  rm -rf .links.tmp  rm -rf .links.tmp
2525  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2526  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2527  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2528  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2529  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2530    echo "" >> ad_flow_files.tmp
2531    
2532    CMDLINE=$0
2533    for xx in "$@" ; do nw=`echo $xx | wc -w`
2534        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2535                            else CMDLINE="$CMDLINE '$xx'" ; fi
2536    done
2537    
2538  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2539      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2540  fi  fi
2541  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2542  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1347  echo "#    $MACHINE" >> $MAKEFILE Line 2544  echo "#    $MACHINE" >> $MAKEFILE
2544  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2545  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2546  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2547  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2548  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2549  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2550    
2551  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2552  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1358  EXE_SVD=$EXECUTABLE"_svd" Line 2555  EXE_SVD=$EXECUTABLE"_svd"
2555  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2556  #  #
2557  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2558  #  #
2559  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2560  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2561  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1378  cat >>$MAKEFILE <<EOF Line 2575  cat >>$MAKEFILE <<EOF
2575  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2576    
2577  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2578  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2579  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2580  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2581  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1395  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2592  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2592  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2593    
2594  # These files are created by Makefile  # These files are created by Makefile
2595  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2596  EOF  EOF
2597    
2598  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2599        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2600    else
2601        echo "EMBEDDED_FILES = " >>$MAKEFILE
2602    fi
2603    
2604  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2605  # Unix ln (link)  # Unix ln (link)
2606  LN = ${LN}  LN = ${LN}
# Line 1414  KPP = ${KPP} Line 2614  KPP = ${KPP}
2614  FC = ${FC}  FC = ${FC}
2615  # Fortran compiler  # Fortran compiler
2616  F90C = ${F90C}  F90C = ${F90C}
2617    # C compiler
2618    CC = ${CC}
2619  # Link editor  # Link editor
2620  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2621    
2622  # Defines for CPP  # Defines for CPP
2623  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1425  INCLUDES = ${INCLUDES} Line 2627  INCLUDES = ${INCLUDES}
2627  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2628  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2629  # Optim./debug for FC  # Optim./debug for FC
2630  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2631  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2632  # Optim./debug for FC  # Optim./debug for FC
2633  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2634  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2635    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2636  # Flags for CC  # Flags for CC
2637  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2638  # Files that should not be optimized  # Files that should not be optimized
2639  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2640  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2641  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2642  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2643  # Name of the Mekfile  # Name of the Mekfile
2644  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2645    
2646  EOF  EOF
2647    
2648  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2649  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2650  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2651  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2652  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2653  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2654    
2655  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2656    
2657  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2658    
2659  .SUFFIXES:  # add definitions for preprocessed sources
2660  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2661    # hence the $FS and $FS90 here.
2662    # for fixed format f90 files we use ff90 or FF90 resp
2663    # but these are not expected to be the original source files
2664    
2665    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2666    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2667    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2668    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2669    echo >> $MAKEFILE
2670    echo '.SUFFIXES:' >> $MAKEFILE
2671    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2672    
2673    cat >>$MAKEFILE <<EOF
2674    
2675  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2676  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2677          @echo Creating \$@ ...          @echo Creating \$@ ...
2678          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2679  depend:  depend:
2680          @make links          @make links
2681          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2682          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2683            -rm -f makedepend.out
2684    
2685    lib: libmitgcmuv.a
2686    
2687    libmitgcmuv.a: \$(OBJFILES)
2688            ar rcv libmitgcmuv.a \$(OBJFILES)
2689            ar d   libmitgcmuv.a main.o
2690    
2691  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2692    
2693  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2694    
2695  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2696          @printf 'running ... '          @printf 'running ... '
2697          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2698    
2699    # remove most of the files that "make" generates
2700  clean:  clean:
2701          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2702            -rm -rf *.o
2703            -rm -rf *.$FS *.flowdir
2704            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2705    
2706    # remove most of the files that "make" and "make depend" generate
2707  Clean:  Clean:
2708          @make clean          @make clean
2709          @make cleanlinks          @make cleanlinks
2710          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2711          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2712            -rm -f genmake_warnings genmake_errors make.log
2713    
2714    # remove also the executable, files that "genmake2" generates (except Makefile)
2715    #         and output from a run (plus log files from testreport)
2716  CLEAN:  CLEAN:
2717          @make Clean          @make Clean
2718            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2719            -rm -f $LOGFILE genmake_state genmake_*optfile
2720            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2721          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2722          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2723          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2724          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2725            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2726            -rm -rf mnc_test_*
2727    
 #eh3 Makefile: makefile  
2728  makefile:  makefile:
2729          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2730  cleanlinks:  cleanlinks:
2731          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2732    
2733  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2734  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2735          @echo Creating \$@ ...          @echo Creating \$@ ...
2736          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2737  AD_CONFIG.h:  AD_CONFIG.h:
2738          @echo Creating \$@ ...          @echo Creating \$@ ...
2739          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2740  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2741          @echo Creating \$@ ...          @echo Creating \$@ ...
2742          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2743    
2744  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2745  .F.f:          @echo Creating \$@ ...
2746    EOF
2747    
2748    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2749    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2750    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2751    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2752    
2753    if test "x$EMBED_SRC" = xt ; then
2754        cat >>$MAKEFILE <<EOF
2755    
2756    decode_files.o : EMBEDDED_FILES.h
2757    
2758    ##  \$(F77_PP_SRC_FILES)
2759    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2760            @echo Creating \$@ ...
2761            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2762            -rm -f all_fF.tar.gz
2763            -gzip all_fF.tar
2764    
2765    EMBEDDED_FILES.h : all_fF.tar.gz
2766            @echo Creating \$@ ...
2767            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2768    
2769    EOF
2770    fi
2771    
2772    cat >>$MAKEFILE <<EOF
2773    
2774    # The normal chain of rules is (  .F - .$FS - .o  )
2775    
2776    ## This nullifies any default implicit rules concerning these two file types:
2777    ## %.o : %.F
2778    
2779    .F.$FS:
2780          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2781  .f.o:  .$FS.o:
2782            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2783    .F.o:
2784          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2785  .F90.f90:  .F90.$FS90:
2786          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2787  .f90.o:  .FF90.f$FS90:
2788            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2789    .$FS90.o:
2790          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2791    .f$FS90.o:
2792            cp \$< \$(basename  \$<).f90
2793            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2794  .c.o:  .c.o:
2795          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2796    .flow.flowdir:
2797            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2798    
2799  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2800  .F.p:  .F.p:
2801          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2802  .p.f:  .p.$FS:
2803          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2804    
2805    EOF
2806    
2807  #=========================================  #=========================================
2808  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2809    #===  for TAMC/TAF  ======================
2810    
2811    if test "x$OPENAD" = x ; then
2812    
2813    cat >>$MAKEFILE <<EOF
2814    
2815  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2816  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1542  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2825  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2825  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2826  for i in $ad_vars ; do  for i in $ad_vars ; do
2827      name=$i      name=$i
2828      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2829      eval $t1      eval $t1
2830      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2831      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2832  done  done
2833    
2834  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2835  echo >> $MAKEFILE  echo >> $MAKEFILE
2836  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2837  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2838  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2839      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2840      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2841  done  done
2842  echo >> $MAKEFILE  echo >> $MAKEFILE
2843  rm -f ad_files  rm -f adSrcFiles.tmp
2844    
2845  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2846    
2847  # ... AD ...  # ... AD ...
2848  adall: ad_taf  adall: \$(EXE_AD)
2849  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2850  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2851    
2852  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2853          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2854          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2855          -rm -f ad_config.template          -rm -f ad_config.template
2856          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2857          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2858          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2859    
2860  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2861          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2862          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2863            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2864    
2865  adtafonly:  adtafonly:
2866          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2867          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2868            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2869  ad_taf: ad_taf_output.o \$(OBJFILES)  
2870          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2871            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2872  ad_tamc_output.f: ad_input_code.f  
2873          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2874          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2875            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2876    
2877  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2878          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2879    
2880    adonlyfwd:
2881            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2882    
2883    adtrick:
2884            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2885    
2886  # ... FTL ...  # ... FTL ...
2887  ftlall: ftl_taf  ftlall: ftl_taf
2888  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2889  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2890    
2891  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2892          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2893          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2894          -rm -f ftl_config.template          -rm -f ftl_config.template
2895          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2896          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2897          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2898    
2899  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2900          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2901          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2902            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2903    
2904  ftltafonly:  ftltafonly:
2905          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2906          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2907            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2908    
2909  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2910          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2911    
2912  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2913          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2914          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2915    
2916  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2917          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
2918    
2919  # ... SVD ...  # ... SVD ...
2920  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2921  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2922            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2923    svdall: svd_touch svd_taf
2924    
2925  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2926          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2927    
2928            @echo "--->>> Only COMPILE svd code! <<<---"
2929            @echo "--->>> Assumes you previously <<<---"
2930            @echo "--->>> did make svdtaf        <<<---"
2931    
2932    svd_touch:
2933            @echo "--->>> Only COMPILE svd code! <<<---"
2934            @echo "--->>> Assumes you previously <<<---"
2935            @echo "--->>> did make svdtaf        <<<---"
2936            touch ad_taf_output.$FS ftl_taf_output.$FS
2937            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2938            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2939            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2940            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2941            -rm -f ftl_config.template
2942    
2943  #=========================================  EOF
2944    
2945    fi
2946    
2947    #===  for OpenAD  ========================
2948    
2949    if test "x$OPENAD" != x ; then
2950    
2951    # ============ begin OpenAD specific section ==============
2952    
2953    cat >>$MAKEFILE <<EOF
2954    
2955    # all the source files linked from the various locations:
2956    ALL_LINKED_FILES= \
2957    \$(F77_SRC_FILES) \
2958    \$(C_SRC_FILES) \
2959    \$(H_SRC_FILES) \
2960    \$(F90_SRC_FILES) \
2961    \$(SPECIAL_FILES)
2962    
2963    ifndef OPENADROOT
2964      \$(error "Error:  environment variable OPENADROOT not defined!")
2965    endif
2966    
2967    ifndef XAIFSCHEMAROOT
2968      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2969    endif
2970    
2971    ifndef XAIFBOOSTERROOT
2972      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2973    endif
2974    
2975    EOF
2976    
2977    echo "  Add the source list for common block to module conversion "
2978    echo >> $MAKEFILE
2979    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2980    for i in `cat ${OAD_CB2M_FILES}` ; do
2981      echo    " \\" >> $MAKEFILE
2982      printf " $i" >> $MAKEFILE
2983    done
2984    echo >> $MAKEFILE
2985    
2986    echo "  Add the source list for AD code generation"
2987    echo >> $MAKEFILE
2988    printf "AD_FILES = " >> $MAKEFILE
2989    for i in `cat ${OAD_CB2M_FILES}` ; do
2990      echo    " \\" >> $MAKEFILE
2991      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2992    done
2993    AD_FILES=`cat adSrcFiles.tmp`
2994    for i in $AD_FILES ; do
2995      basename=${i%%.f}
2996      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2997      if test -z "$toBeIgnored" ; then
2998        echo    " \\" >> $MAKEFILE
2999        printf " $i" >> $MAKEFILE
3000      fi
3001    done
3002    echo >> $MAKEFILE
3003    rm -f adSrcFiles.tmp
3004    
3005    cat >>$MAKEFILE <<EOF
3006    
3007    adAll: \$(EXE_AD)
3008    .PHONY: adAll
3009    
3010    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3011    
3012    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3013    
3014    .PHONY: adDepend
3015    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3016            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3017            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3018            -rm -f makedepend.out
3019    
3020    OPENAD_SUPPORT_F90_SRC_FILES = \
3021    w2f__types.F90 \
3022    OAD_active.F90 \
3023    OAD_cp.F90 \
3024    OAD_rev.F90 \
3025    OAD_tape.F90
3026    
3027    OPENAD_SUPPORT_C_SRC_FILES = \
3028    iaddr.c \
3029    timeRatio.c
3030    
3031    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3032            cat \$^ > \$@
3033    
3034    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3035            cat \$^ > \$@
3036    
3037    f95_test.out: f95_test_mods.f90 f95_test.f90
3038            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3039            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3040    
3041    # the file included below is created by the
3042    # postProcessor and its inclusion sets the
3043    # variable POSTPROCESSEDFILES
3044    # used below. Because the file is made during
3045    # make it won't be read until the second (recursive)
3046    # invocation in the rule below
3047    -include postProcess.make
3048    
3049    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3050    
3051    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3052    
3053    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3054    ifeq (\$(MAKELEVEL),0)
3055            \$(MAKE) adAll
3056    else
3057            touch \$@
3058    endif
3059    
3060    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3061    ifeq (\$(MAKELEVEL),1)
3062            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3063    else
3064            touch \$@
3065    endif
3066    
3067    # makefile debug rule
3068    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3069    .PHONY: openad
3070    
3071    # create the module files
3072    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3073            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3074    
3075    # create the header files
3076    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3077            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3078    
3079    # change everybody else to use the new module files:
3080    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3081            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3082    
3083    # makefile debug rule
3084    small_f: \$(CB2M_F90_PP_SRC_FILES)
3085    .PHONY: small_f
3086    
3087    ad_output.txt: \$(EXE_AD)
3088            @printf 'linking data files ... '
3089            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3090            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3091            @printf 'running ... '
3092            @./\$(EXE_AD) > \$@
3093    
3094    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3095    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3096            cat \$^ > \$@
3097    
3098    # strip all comments and blanks to reduce
3099    # the file size in order to reduce perl's memory requirements
3100    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3101            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3102    
3103    # mfef90 preprocessing
3104    # expand statement functions
3105    # expose mfef90 specific substring handling
3106    # add the w2f__types module
3107    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3108            ./mfef90 -r8 -z -F -N132 \$<
3109            mv \$<.B \$(basename \$<).B
3110            ./whirl2f -openad \$(basename \$<).B
3111            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3112    
3113    # canonicalizer
3114    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3115            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3116    
3117    # F -> WHIRL
3118    # note that the canonicalized version cuts off at col 72
3119    # doing this also for string constants which is ok as long
3120    # as we are in fixed mode and cut of exactly there.
3121    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3122    # characters respectively.
3123    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3124            ./mfef90 -r8 -z -F \$<
3125            mv \$<.B \$@
3126    
3127    # WHIRL -> XAIF
3128    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3129            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3130    
3131    # XAIF -> XAIF'
3132    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3133            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3134    
3135    # XAIF' -> WHIRL'
3136    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3137            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3138    
3139    # WHIRL' -> F'
3140    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3141            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3142    
3143    # insert template directives
3144    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3145            ../OAD_support/insertTemplateDir.bash \$< \$@
3146    
3147    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3148    # postprocess F'
3149    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3150            # the target is a placeholder to signal execution of the rule
3151            touch \$@
3152            # this step also creates the file postProcess.make but we cannot
3153            # name it as the target or else make will try to remake it for
3154            # the include directive above for any rule, e.g. make clean
3155            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3156    
3157    # setup some links
3158    %.xsd:
3159            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3160    
3161    mfef90:
3162            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3163    
3164    # link the support files:
3165    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3166            \$(LN) ../OAD_support/\$@ .
3167    
3168    whirl2xaif xaif2whirl:
3169            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3170    
3171    preProcess.py postProcess.py:
3172            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3173    
3174    whirl2f whirl2f_be:
3175            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3176    
3177    oadDriver:
3178            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3179    
3180    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3181    
3182    # ============ end OpenAD specific section ==============
3183    
3184  EOF  EOF
3185    
3186    fi
3187    
3188    #=========================================
3189    
3190  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3191      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3192  fi  fi
# Line 1648  for i in $KPPFILES ; do Line 3198  for i in $KPPFILES ; do
3198      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3199          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3200      fi      fi
3201      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3202  done  done
3203    
3204  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1658  for i in $NOOPTFILES ; do Line 3208  for i in $NOOPTFILES ; do
3208      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3209          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3210      fi      fi
3211      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3212      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3213  done  done
3214    
# Line 1672  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3222  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3222  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3223    
3224  # Create special header files  # Create special header files
3225  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3226  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3227      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3228  else  else
3229      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3230      RETVAL=$?      RETVAL=$?
3231      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
3232          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1686  else Line 3236  else
3236      fi      fi
3237  fi  fi
3238  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3239      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3240  fi  fi
3241    
   
3242  #  Write the "state" for future records  #  Write the "state" for future records
3243  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3244      echo -n "" > genmake_state      printf "" > genmake_state
3245      for i in $gm_state ; do      for i in $gm_state ; do
3246          t1="t2=\$$i"          t1="t2=\$$i"
3247          eval $t1          eval $t1

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