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revision 1.57 by edhill, Tue Dec 9 18:58:24 2003 UTC revision 1.203 by jmc, Thu Mar 4 21:24:22 2010 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 45  test_for_string_in_file() {
45      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 67  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
# Line 80  find_possible_configs()  { Line 299  find_possible_configs()  {
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302      PLATFORM=$tmp2      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 100  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # makedepend is not always available      look_for_makedepend
325      if test "x${MAKEDEPEND}" = x ; then  
326        which makedepend >& /dev/null      #================================================================
327        RETVAL=$?      #  look for possible C compilers
328        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
330           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
331        fi          rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 136  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 215  get_pdepend_list()  { Line 485  get_pdepend_list()  {
485      . ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
# Line 229  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 244  Usage: "$0" [OPTIONS] Line 519  Usage: "$0" [OPTIONS]
519        -pdefault=NAME | --pdefault=NAME        -pdefault=NAME | --pdefault=NAME
520            Get the default package list from "NAME".            Get the default package list from "NAME".
521    
522        -bash NAME
523              Explicitly specify the Bourne or BASH shell to use
524    
525      -make NAME | -m NAME      -make NAME | -m NAME
526        --make=NAME | -m=NAME        --make=NAME | -m=NAME
527            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
# Line 253  Usage: "$0" [OPTIONS] Line 531  Usage: "$0" [OPTIONS]
531        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
532            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
533    
534        -makedepend NAME | -md NAME
535          --makedepend=NAME | -md=NAME
536              Use "NAME" for the MAKEDEPEND program.
537    
538      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
539        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
540            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 289  Usage: "$0" [OPTIONS] Line 571  Usage: "$0" [OPTIONS]
571            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
572            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
573    
574        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
575              Use "NAME" as the C compiler.  By default, genmake
576              will search for a working compiler by trying a list of
577              "usual suspects" such as gcc, c89, cc, etc.
578    
579      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
580            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
581            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
582            is being used.            is being used.
583    
584        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
585              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
586              *only* works if CPP_EEOPTIONS.h allows this.
587    
588        -ignoretime | -ignore_time | --ignoretime | --ignore_time
589              Ignore all the "wall clock" routines entirely.  This will
590              not in any way hurt the model results -- it simply means
591              that the code that checks how long the model spends in
592              various routines will give junk values.
593    
594        -ts | --ts
595              Produce timing information per timestep
596        -papis | --papis
597              Produce summary MFlop/s (and IPC) with PAPI per timestep
598        -pcls | --pcls
599              Produce summary MFlop/s etc. with PCL per timestep
600        -foolad | --foolad
601              Fool the AD code generator
602        -papi | --papi
603              Performance analysis with PAPI
604        -pcl | --pcl
605              Performance analysis with PCL
606        -hpmt | --hpmt
607              Performance analysis with the HPM Toolkit
608    
609        -gsl | --gsl
610              Use GSL to control floating point rounding and precision
611        -devel | --devel
612              Add additional warning and debugging flags for development
613    
614        -mpi | --mpi
615              Include MPI header files and link to MPI libraries
616        -mpi=PATH | --mpi=PATH
617              Include MPI header files and link to MPI libraries using MPI_ROOT
618              set to PATH. i.e. Include files from \$PATH/include, link to libraries
619              from \$PATH/lib and use binaries from \$PATH/bin.
620    
621        -omp | --omp
622              Activate OpenMP code + use Compiler option OMPFLAG
623        -omp=OMPFLAG | --omp=OMPFLAG
624              Activate OpenMP code + use Compiler option OMPFLAG
625    
626        -es | --es | -embed-source | --embed-source
627              Embed a tarball containing the full source code
628              (including the Makefile, etc.) used to build the
629              executable [off by default]
630    
631    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
632    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
633    
# Line 305  Usage: "$0" [OPTIONS] Line 639  Usage: "$0" [OPTIONS]
639    
640    For more detailed genmake documentation, please see:    For more detailed genmake documentation, please see:
641    
642      http://mitgcm.org/devel_HOWTO/      http://mitgcm.org/public/devel_HOWTO/
643    
644  EOF  EOF
645    
# Line 314  EOF Line 648  EOF
648    
649  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
650  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
651    
652        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
653        if test ! "x$FC_NAMEMANGLE" = x ; then
654            return 0
655        fi
656    
657      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
658            
659      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 331  WARNING: Please contact <MITgcm-support@ Line 671  WARNING: Please contact <MITgcm-support@
671  EOF  EOF
672          return 1          return 1
673      fi      fi
674      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
675      RETVAL=$?      RETVAL=$?
676      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
677          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 343  WARNING: Please contact <MITgcm-support@ Line 683  WARNING: Please contact <MITgcm-support@
683  EOF  EOF
684          return 1          return 1
685      fi      fi
686      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
687        subroutine tcall( string )        subroutine tcall( string )
688        character*(*) string        character*(*) string
689        call tsub( string )        call tsub( string )
690        end        end
691  EOF  EOF
692      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
693      RETVAL=$?      RETVAL=$?
694      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
695          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 361  WARNING: Please contact <MITgcm-support@ Line 701  WARNING: Please contact <MITgcm-support@
701  EOF  EOF
702          return 1          return 1
703      fi      fi
704      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
705      RETVAL=$?      RETVAL=$?
706      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
707          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 415  void FC_NAMEMANGLE(cloc) ( double *curti Line 755  void FC_NAMEMANGLE(cloc) ( double *curti
755   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
756  }  }
757  EOF  EOF
758      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
759        echo $COMM >> genmake_warnings
760        $COMM >> genmake_warnings 2>&1
761      RET_C=$?      RET_C=$?
762      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
763        program hello        program hello
764        Real*8 wtime        REAL*8 wtime
765        external cloc        external cloc
766        call cloc(wtime)        call cloc(wtime)
767        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
768        end program hello        end
769  EOF  EOF
770      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
771        echo $COMM >> genmake_warnings
772        $COMM >> genmake_warnings 2>&1
773      RET_F=$?      RET_F=$?
774      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
775      RETVAL=$?      RETVAL=$?
776      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
777          HAVE_CLOC=t          HAVE_CLOC=t
# Line 437  EOF Line 781  EOF
781  }  }
782    
783    
784    check_HAVE_SIGREG()  {
785        if test ! "x$HAVE_SIGREG" = x ; then
786            return
787        fi
788        get_fortran_c_namemangling
789        cat <<EOF > genmake_tc_1.c
790    $FC_NAMEMANGLE
791    #include <stdlib.h>
792    #include <stdio.h>
793    #include <signal.h>
794    #include <errno.h>
795    #include <ucontext.h>
796    
797    int * ip;
798    
799    static void killhandler(
800        unsigned int sn, siginfo_t  si, struct ucontext *sc )
801    {
802        *ip = *ip + 1;
803        return;
804    }
805    
806    void FC_NAMEMANGLE(sigreg) (int * aip)
807    {
808        struct sigaction s;
809        ip = aip;
810        s.sa_flags = SA_SIGINFO;
811        s.sa_sigaction = (void *)killhandler;
812        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
813            printf("Sigaction returned error = %d\n", errno);
814            exit(0);
815        }
816        return;
817    }
818    EOF
819        COMM="$CC $CFLAGS -c genmake_tc_1.c"
820        echo $COMM >> genmake_warnings
821        $COMM >> genmake_warnings 2>&1
822        RET_C=$?
823        cat <<EOF > genmake_tc_2.$FS
824          program hello
825          integer anint
826          common /iv/ anint
827          external sigreg
828          call sigreg(anint)
829          end
830    EOF
831        echo >> genmake_warnings
832        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
833        cat genmake_tc_2.$FS >> genmake_warnings
834        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> genmake_warnings
836        $COMM >> genmake_warnings 2>&1
837        RETVAL=$?
838        if test "x$RETVAL" = x0 ; then
839            HAVE_SIGREG=t
840            DEFINES="$DEFINES -DHAVE_SIGREG"
841        fi
842        rm -f genmake_tc*
843    }
844    
845    
846    check_HAVE_SETRLSTK()  {
847        if test "x$HAVE_SETRLSTK" = xt ; then
848            DEFINES="$DEFINES -DHAVE_SETRLSTK"
849            return
850        fi  
851        if test ! "x$HAVE_SETRLSTK" = x ; then
852            return
853        fi
854        get_fortran_c_namemangling
855        cat <<EOF > genmake_tc_1.c
856    $FC_NAMEMANGLE
857    #include <sys/time.h>
858    #include <sys/resource.h>
859    #include <unistd.h>
860    void FC_NAMEMANGLE(setrlstk) ()
861    {
862        struct rlimit rls;
863        rls.rlim_cur = RLIM_INFINITY;
864        rls.rlim_max = RLIM_INFINITY;
865        setrlimit(RLIMIT_STACK, &rls);
866        return;
867    }
868    EOF
869        COMM="$CC $CFLAGS -c genmake_tc_1.c"
870        echo $COMM >> genmake_warnings
871        $COMM >> genmake_warnings 2>&1
872        RET_C=$?
873        cat <<EOF > genmake_tc_2.$FS
874          program hello
875          external setrlstk
876          call setrlstk()
877          end
878    EOF
879        echo >> genmake_warnings
880        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
881        cat genmake_tc_2.$FS >> genmake_warnings
882        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
883        echo $COMM >> genmake_warnings
884        $COMM >> genmake_warnings 2>&1
885        RETVAL=$?
886        if test "x$RETVAL" = x0 ; then
887            HAVE_SETRLSTK=t
888            DEFINES="$DEFINES -DHAVE_SETRLSTK"
889        fi
890        rm -f genmake_tc*
891    }
892    
893    
894    check_HAVE_STAT()  {
895        get_fortran_c_namemangling
896        cat <<EOF > genmake_tc_1.c
897    $FC_NAMEMANGLE
898    #include <stdio.h>
899    #include <stdlib.h>
900    #include <unistd.h>
901    #include <sys/stat.h>
902    #include <sys/types.h>
903    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
904    {
905        char name[512];
906        struct stat astat;
907    
908        name[0] = 'a'; name[1] = '\0';
909        if (! stat(name, &astat))
910            *nbyte = (int)(astat.st_size);
911        else
912            *nbyte = -1;
913    }
914    EOF
915        COMM="$CC $CFLAGS -c genmake_tc_1.c"
916        echo $COMM >> genmake_warnings
917        $COMM >> genmake_tc.log 2>&1
918        RET_C=$?
919        cat <<EOF > genmake_tc_2.$FS
920          program hello
921          integer nbyte
922          call tfsize(nbyte)
923          print *," HELLO WORLD", nbyte
924          end
925    EOF
926        echo >> genmake_warnings
927        echo "running: check_HAVE_STAT()" >> genmake_warnings
928        cat genmake_tc_2.$FS >> genmake_warnings
929        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
930        echo $COMM >> genmake_warnings
931        $COMM >> genmake_tc.log 2>&1
932        RETVAL=$?
933        if test "x$RETVAL" = x0 ; then
934            HAVE_STAT=t
935            DEFINES="$DEFINES -DHAVE_STAT"
936        fi
937        rm -f genmake_tc*
938    }
939    
940    
941    check_netcdf_libs()  {
942        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
943            return
944        fi
945        echo >> genmake_warnings
946        echo "running: check_netcdf_libs()" >> genmake_warnings
947        cat <<EOF > genmake_tnc.F
948          program fgennc
949    #include "netcdf.inc"
950    EOF
951        if test ! "x$MPI" = x ; then
952            echo '#include "mpif.h"' >> genmake_tnc.F
953        fi
954        cat <<EOF >> genmake_tnc.F
955          integer iret, ncid, xid
956          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
957          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
958          iret = nf_def_dim(ncid, 'X', 11, xid)
959          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
960          iret = nf_close(ncid)
961          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
962          end
963    EOF
964        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
965        cat genmake_tnc.F >> genmake_tnc.log
966        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
967        RET_CPP=f
968        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
969        echo "$COMM" >> genmake_tnc.log
970        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
971        if test "x$RET_CPP" = xf ; then
972            echo "  WARNING: CPP failed to pre-process the netcdf test." \
973                >> genmake_tnc.log
974            echo "    Please check that \$INCLUDES is properly set." \
975                >> genmake_tnc.log
976        fi
977        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
978        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
979        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
980            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
981        RET_COMPILE=$?
982        cat genmake_tnc.log >> genmake_warnings
983    
984        #EH3  Remove test program execution for machines that either disallow
985        #EH3  execution or cannot support it (eg. cross-compilers)
986        #EH3
987        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
988        #EH3 RETVAL=$?
989        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
990    
991        if test "x$RET_COMPILE" = x0 ; then
992            HAVE_NETCDF=t
993        else
994            # try again with "-lnetcdf" added to the libs
995            echo "try again with added '-lnetcdf'" > genmake_tnc.log
996            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
997            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
998            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
999            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1000                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1001                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1002            RET_COMPILE=$?
1003            cat genmake_tnc.log >> genmake_warnings
1004            if test "x$RET_COMPILE" = x0 ; then
1005                LIBS="$LIBS -lnetcdf"
1006                HAVE_NETCDF=t
1007            else
1008            # try again with "-lnetcdff" added to the libs
1009                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1010                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1011                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1012                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1013                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1014                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1015                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1016                RET_COMPILE=$?
1017                cat genmake_tnc.log >> genmake_warnings
1018                if test "x$RET_COMPILE" = x0 ; then
1019                    LIBS="$LIBS -lnetcdff -lnetcdf"
1020                    HAVE_NETCDF=t
1021                fi
1022            fi
1023        fi
1024        rm -f genmake_tnc*
1025    }
1026    
1027    
1028    
1029    ###############################################################################
1030    #   Sequential part of script starts here
1031    ###############################################################################
1032    
1033  #  Set defaults here  #  Set defaults here
1034  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1035    
# Line 444  PLATFORM= Line 1037  PLATFORM=
1037  LN=  LN=
1038  S64=  S64=
1039  KPP=  KPP=
1040  FC=  #FC=
1041    #CC=gcc
1042    #CPP=
1043  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1044  DEFINES=  DEFINES=
1045  PACKAGES=  PACKAGES=
1046  ENABLE=  ENABLE=
1047  DISABLE=  DISABLE=
1048  MAKEFILE=  # MAKEFILE=
1049  MAKEDEPEND=  # MAKEDEPEND=
1050  PDEPEND=  PDEPEND=
1051  DUMPSTATE=t  DUMPSTATE=t
1052  PDEFAULT=  PDEFAULT=
1053  OPTFILE=  OPTFILE=
1054  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1055  FFLAGS=  FFLAGS=
1056  FOPTIM=  FOPTIM=
1057    FEXTRAFLAGS=
1058    USE_EXTENDED_SRC=
1059    EXTENDED_SRC_FLAG=
1060  CFLAGS=  CFLAGS=
1061  KFLAGS1=  KFLAGS1=
1062  KFLAGS2=  KFLAGS2=
1063    #LDADD=
1064  LIBS=  LIBS=
1065  KPPFILES=  KPPFILES=
1066  NOOPTFILES=  NOOPTFILES=
1067  NOOPTFLAGS=  NOOPTFLAGS=
1068    MPI=
1069    MPIPATH=
1070    OMP=
1071    OMPFLAG=
1072    USE_R4=
1073    TS=
1074    PAPIS=
1075    PCLS=
1076    FOOLAD=
1077    PAPI=
1078    PCL=
1079    HPMT=
1080    GSL=
1081    DEVEL=
1082    HAVE_TEST_L=
1083    
1084  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1085  HAVE_SYSTEM=  HAVE_SYSTEM=
1086  HAVE_FDATE=  HAVE_FDATE=
1087  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1088  HAVE_CLOC=  HAVE_CLOC=
1089    # HAVE_SETRLSTK=
1090    HAVE_STAT=
1091    HAVE_NETCDF=
1092    HAVE_ETIME=
1093    IGNORE_TIME=
1094    
1095  MODS=  MODS=
1096  TOOLSDIR=  TOOLSDIR=
# Line 480  SOURCEDIRS= Line 1098  SOURCEDIRS=
1098  INCLUDEDIRS=  INCLUDEDIRS=
1099  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1100    
1101    G2ARGS=
1102    BASH=
1103  PWD=`pwd`  PWD=`pwd`
1104  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1105  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1106  THISHOSTNAME=`hostname`  EMBED_SRC=
1107    THISHOST=`hostname`
1108  THISCWD=`pwd`  THISCWD=`pwd`
1109  THISDATE=`date`  THISDATE=`date`
1110    THISUSER=`echo $USER`
1111    THISVER=
1112  MACHINE=`uname -a`  MACHINE=`uname -a`
1113  EXECUTABLE=  EXECUTABLE=
1114  EXEHOOK=  EXEHOOK=
# Line 495  IEEE= Line 1118  IEEE=
1118  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1119      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1120  fi  fi
1121    FS=
1122    FS90=
1123    
1124  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1125  AD_OPTFILE=  AD_OPTFILE=
# Line 512  TAMC_EXTRA= Line 1137  TAMC_EXTRA=
1137    
1138  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1139  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1140  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"
1141    
1142  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1143  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1144  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1145  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1146  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1147  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1148    
1149  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1150  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 542  EOF Line 1167  EOF
1167    
1168  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1169  gm_local="genmake_local"  gm_local="genmake_local"
1170  for i in . $MODS ; do  printf "  getting local config information:  "
1171      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1172      echo "using $gm_local"      echo "using $gm_local"
1173      . $gm_local      . $gm_local
1174      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 558  else Line 1177  else
1177      echo "none found"      echo "none found"
1178  fi  fi
1179    
1180  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1181  #parse_options  #parse_options
1182  ac_prev=  ac_prev=
1183  for ac_option ; do  for ac_option in "$@" ; do
1184    
1185        G2ARGS="$G2ARGS \"$ac_option\""
1186    
1187      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1188      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 613  for ac_option ; do Line 1225  for ac_option ; do
1225          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1226              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1227                    
1228            -bash | --bash)
1229                ac_prev=BASH ;;
1230            -bash=* | --bash=*)
1231                BASH=$ac_optarg ;;
1232            
1233            -makedepend | --makedepend | -md | --md)
1234                ac_prev=MAKEDEPEND ;;
1235            -makedepend=* | --makedepend=* | -md=* | --md=*)
1236                MAKEDEPEND=$ac_optarg ;;
1237            
1238          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1239              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1240          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 654  for ac_option ; do Line 1276  for ac_option ; do
1276  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1277  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1278  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1279                        
1280            -cc | --cc)
1281                ac_prev=CC ;;
1282            -cc=* | --cc=*)
1283                CC=$ac_optarg ;;
1284            
1285          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1286              ac_prev=FC ;;              ac_prev=FC ;;
1287          -fc=* | --fc=*)          -fc=* | --fc=*)
1288              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1289                    
1290            -fs | --fs)
1291                ac_prev=FS ;;
1292            -fs=* | --fs=*)
1293                FS=$ac_optarg ;;
1294            
1295            -fs90 | --fs90)
1296                ac_prev=FS90 ;;
1297            -fs90=* | --fs90=*)
1298                FS90=$ac_optarg ;;
1299            
1300          -ieee | --ieee)          -ieee | --ieee)
1301              IEEE=true ;;              IEEE=true ;;
1302          -noieee | --noieee)          -noieee | --noieee)
1303              IEEE= ;;              IEEE= ;;
1304    
1305            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1306                USE_R4=true ;;
1307    
1308            -ts | --ts)
1309                TS=true ;;
1310            -papis | --papis)
1311                PAPIS=true ;;
1312            -pcls | --pcls)
1313                PCLS=true ;;
1314            -foolad | --foolad)
1315                FOOLAD=true ;;
1316            -papi | --papi)
1317                PAPI=true ;;
1318            -pcl | --pcl)
1319                PCL=true ;;
1320            -hpmt | --hpmt)
1321                HPMT=true ;;
1322    
1323            -gsl | --gsl)
1324                GSL=true ;;
1325    
1326            -devel | --devel)
1327                DEVEL=true ;;
1328    
1329            -mpi | --mpi)
1330                MPI=true ;;
1331            -mpi=* | --mpi=*)
1332                MPIPATH=$ac_optarg
1333                MPI=true ;;
1334                    
1335  #       -jam | --jam)          -omp | --omp)
1336  #           JAM=1 ;;              OMP=true ;;
1337  #       -nojam | --nojam)          -omp=* | --omp=*)
1338  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1339                OMP=true ;;
1340                    
1341          -ds | --ds)          -ds | --ds)
1342              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 682  for ac_option ; do Line 1350  for ac_option ; do
1350              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1351          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1352              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1353            
1354            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1355                IGNORE_TIME="-DIGNORE_TIME" ;;
1356    
1357            -es | --es | -embed-source | --embed-source)
1358                EMBED_SRC=t ;;
1359    
1360          -*)          -*)
1361              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 697  for ac_option ; do Line 1371  for ac_option ; do
1371            
1372  done  done
1373    
1374    
1375  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1376      echo      echo
1377      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1378      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1379      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1380      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1381      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1382      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1383      echo      echo
1384  fi  fi
1385    
1386    #  Find the MITgcm ${ROOTDIR}
1387  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1388      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1389        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1390          ROOTDIR=".."          ROOTDIR=".."
1391      else      else
1392          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1393              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1394                  ROOTDIR=$d                  ROOTDIR=$d
1395                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1396                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1397                  break                  break
1398              fi              fi
# Line 734  if test ! -d ${ROOTDIR} ; then Line 1410  if test ! -d ${ROOTDIR} ; then
1410      exit 1      exit 1
1411  fi  fi
1412    
1413    #  Find the MITgcm ${THISVER}
1414    version_file="${ROOTDIR}/doc/tag-index"
1415    if test -f $version_file ; then
1416        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1417    #-  remove ./BUILD_INFO.h file if older than version_file
1418        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1419            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1420            rm -f ./BUILD_INFO.h
1421        fi
1422    fi
1423    
1424    if test "x$MAKEFILE" = x ; then
1425        MAKEFILE="Makefile"
1426    fi
1427    
1428  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1429  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1430      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 750  if test "x$OPTFILE" != xNONE ; then Line 1441  if test "x$OPTFILE" != xNONE ; then
1441          . "$OPTFILE"          . "$OPTFILE"
1442          RETVAL=$?          RETVAL=$?
1443          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1444              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1445              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1446              exit 1              exit 1
1447          fi          fi
# Line 777  if test "x${AD_OPTFILE}" != xNONE ; then Line 1468  if test "x${AD_OPTFILE}" != xNONE ; then
1468          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1469          RETVAL=$?          RETVAL=$?
1470          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1471              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1472              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1473              exit 1              exit 1
1474          fi          fi
# Line 790  if test "x${AD_OPTFILE}" != xNONE ; then Line 1481  if test "x${AD_OPTFILE}" != xNONE ; then
1481      fi      fi
1482  fi  fi
1483    
1484  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1485    #  Set default values if not set by the optfile
1486    #
1487    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1488  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1489    if test ! "x$BASH" = x ; then
1490        # add a trailing space so that it works within the Makefile syntax (see below)
1491        BASH="$BASH "
1492    fi
1493  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1494      cat <<EOF 1>&2      cat <<EOF 1>&2
1495    
# Line 802  Error: no Fortran compiler: please speci Line 1500  Error: no Fortran compiler: please speci
1500  EOF  EOF
1501      exit 1      exit 1
1502  fi  fi
1503    if test "x$CC" = x ; then
1504        CC=cc
1505    #     cat <<EOF 1>&2
1506    # Error: no C compiler: please specify using one of the following:
1507    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1508    #   2) the "-cc=XXX" command-line option
1509    #   3) the "./genmake_local" file
1510    # EOF
1511    #     exit 1
1512    fi
1513  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1514      LINK=$FC      LINK=$FC
1515  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1516  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1517      MAKE="make"      MAKE="make"
1518  fi  fi
1519    if test "x$CPP" = x ; then
1520        CPP=cpp
1521    fi
1522    #EH3 === UGLY ===
1523    #  The following is an ugly little hack to check for $CPP in /lib/ and
1524    #  it should eventually be replaced with a more general function that
1525    #  searches a combo of the user's path and a list of "usual suspects"
1526    #  to find the correct location for binaries such as $CPP.
1527    for i in " " "/lib/" ; do
1528        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1529    done
1530    #EH3 === UGLY ===
1531  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1532  RETVAL=$?  RETVAL=$?
1533  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 827  EOF Line 1544  EOF
1544  else  else
1545      rm -f test_cpp      rm -f test_cpp
1546  fi  fi
1547  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1548  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1549      LN="ln -s"      LN="ln -s"
1550  fi  fi
# Line 845  Error: The command "ln -s" failed -- ple Line 1560  Error: The command "ln -s" failed -- ple
1560  EOF  EOF
1561      exit 1      exit 1
1562  fi  fi
1563    test -L genmake_tlink > /dev/null 2>&1
1564    RETVAL=$?
1565    if test "x$RETVAL" = x0 ; then
1566        HAVE_TEST_L=t
1567    fi
1568  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1569    
1570    #  Check for broken *.F/*.f handling and fix if possible
1571    check_for_broken_Ff
1572    
1573    if test ! "x$MPI" = x ; then
1574          echo "  Turning on MPI cpp macros"
1575          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1576    fi
1577    if test ! "x$OMP" = x ; then
1578          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1579          FFLAGS="$FFLAGS $OMPFLAG"
1580          F90FLAGS="$F90FLAGS $OMPFLAG"
1581          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1582    fi
1583    
1584    if test ! "x$USE_R4" = x ; then
1585          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1586          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1587    fi
1588    
1589    if test ! "x$TS" = x ; then
1590          echo "  Turning on timing per timestep"
1591          if test ! "x$FOOLAD" = x ; then
1592                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1593          else
1594                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1595          fi
1596          PACKAGES="$PACKAGES showflops"
1597    fi
1598    if test ! "x$PAPIS" = x ; then
1599          echo "  Turning on PAPI flop summary per timestep"
1600          echo "  Please make sure PAPIINC, PAPILIB are defined"
1601          if test ! "x$FOOLAD" = x ; then
1602                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1603          else
1604                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1605          fi
1606          INCLUDES="$INCLUDES $PAPIINC"
1607          LIBS="$LIBS $PAPILIB"
1608          PACKAGES="$PACKAGES showflops"
1609    fi
1610    if test ! "x$PCLS" = x ; then
1611          echo "  Turning on PCL counter summary per timestep"
1612          echo "  Please make sure PCLINC, PCLLIB are defined"
1613          if test ! "x$FOOLAD" = x ; then
1614                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1615          else
1616                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1617          fi
1618          INCLUDES="$INCLUDES $PCLINC"
1619          LIBS="$LIBS $PCLLIB"
1620          PACKAGES="$PACKAGES showflops"
1621    fi
1622    if test ! "x$PAPI" = x ; then
1623          if test ! "x$PAPIS" = x ; then
1624              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1625              echo "  Sticking with PAPI flop summary per timestep!"
1626          else
1627              echo "  Turning on performance analysis with PAPI"
1628              echo "  Please make sure PAPIINC, PAPILIB are defined"
1629              DEFINES="$DEFINES -DUSE_PAPI"
1630              INCLUDES="$INCLUDES $PAPIINC"
1631              LIBS="$LIBS $PAPILIB"
1632          fi
1633    fi
1634    if test ! "x$PCL" = x ; then
1635          if test ! "x$PCLS" = x ; then
1636              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1637              echo "  Sticking with PCL flop summary per timestep!"
1638          else
1639              echo "  Turning on performance analysis with PCL"
1640              echo "  Please make sure PCLINC, PCLLIB are defined"
1641              DEFINES="$DEFINES -DUSE_PCL"
1642              INCLUDES="$INCLUDES $PCLINC"
1643              LIBS="$LIBS $PCLLIB"
1644          fi
1645    fi
1646    if test ! "x$HPMT" = x ; then
1647          if test ! "x$PAPI" = x ; then
1648              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1649              echo "  Sticking with PAPI!"
1650          else if test ! "x$PCL" = x ; then
1651              echo "  PCL and the HPM Toolkit cannot co-exist!"
1652              echo "  Sticking with PCL!"
1653          else
1654              echo "  Turning on performance analysis with the HPM Toolkit"
1655              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1656              DEFINES="$DEFINES -DUSE_LIBHPM"
1657              INCLUDES="$INCLUDES $HPMTINC"
1658              LIBS="$LIBS $HPMTLIB"
1659          fi
1660          fi
1661    fi
1662    if test ! "x$GSL" = x ; then
1663          echo "  Turning on use of GSL to control floating point calculations"
1664          echo "  Please make sure GSLINC, GSLLIB are defined"
1665          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1666          INCLUDES="$INCLUDES $GSLINC"
1667          LIBS="$LIBS $GSLLIB"
1668    fi
1669    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1670    if test ! "x$USE_EXTENDED_SRC" = x ; then
1671          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1672          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1673    fi
1674    
1675  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1676  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1677  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1678        program hello        program hello
1679        call system('echo hi')        call system('echo hi')
1680        end        end
1681  EOF  EOF
1682  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1683  RETVAL=$?  RETVAL=$?
1684  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1685      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 867  else Line 1691  else
1691  fi  fi
1692  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1693    
1694  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1695  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1696        program hello        program hello
1697        CHARACTER(128) string        CHARACTER*(128) string
1698        string = ' '        string = ' '
1699        call fdate( string )        call fdate( string )
1700        print *, string        print *, string
1701        end        end
1702  EOF  EOF
1703  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1704  RETVAL=$?  RETVAL=$?
1705  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1706      HAVE_FDATE=t      HAVE_FDATE=t
# Line 888  else Line 1712  else
1712  fi  fi
1713  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1714    
1715  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1716    cat > genmake_tcomp.$FS <<EOF
1717          program hello
1718          REAL*4 ACTUAL, TARRAY(2)
1719          EXTERNAL ETIME
1720          REAL*4 ETIME
1721          actual = etime( tarray )
1722          print *, tarray
1723          end
1724    EOF
1725    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1726    RETVAL=$?
1727    if test "x$RETVAL" = x0 ; then
1728        HAVE_ETIME=t
1729        DEFINES="$DEFINES -DHAVE_ETIME"
1730        echo "yes"
1731    else
1732        HAVE_ETIME=
1733        echo "no"
1734    fi
1735    rm -f genmake_tcomp*
1736    
1737    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1738  check_HAVE_CLOC  check_HAVE_CLOC
1739  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1740      echo "yes"      echo "yes"
1741  else  else
1742      echo "no"      echo "no"
1743        if test "x$EMBED_SRC" = xt ; then
1744            echo "    WARNING: you requested file embedding but it has"
1745            echo "      been disabled since C code cannot be called"
1746            EMBED_SRC=
1747        fi
1748  fi  fi
1749  rm -f genmake_t*  rm -f genmake_t*
1750    
1751    printf "  Can we unlimit the stack size using $FC...  "
1752    check_HAVE_SETRLSTK
1753    if test "x$HAVE_SETRLSTK" = xt ; then
1754        echo "yes"
1755    else
1756        echo "no"
1757    fi
1758    rm -f genmake_t*
1759    
1760    printf "  Can we register a signal handler using $FC...  "
1761    check_HAVE_SIGREG
1762    if test "x$HAVE_SIGREG" = xt ; then
1763        echo "yes"
1764    else
1765        echo "no"
1766    fi
1767    rm -f genmake_t*
1768    
1769    printf "  Can we use stat() through C calls...  "
1770    check_HAVE_STAT
1771    if test "x$HAVE_STAT" != x ; then
1772        echo "yes"
1773    else
1774        echo "no"
1775    fi
1776    rm -f genmake_t*
1777    
1778    printf "  Can we create NetCDF-enabled binaries...  "
1779    check_netcdf_libs
1780    if test "x$HAVE_NETCDF" != x ; then
1781        echo "yes"
1782    else
1783        echo "no"
1784    fi
1785    DEFINES="$DEFINES $IGNORE_TIME"
1786    
1787    if test "x$EMBED_SRC" = xt ; then
1788        build_embed_encode
1789    fi
1790    if test "x$EMBED_SRC" = xt ; then
1791        ENABLE="$ENABLE embed_files"
1792    fi
1793    
1794    
1795  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1796  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1797  for d in $MODS ; do  for d in $MODS ; do
1798      if test ! -d $d ; then      if test ! -d $d ; then
1799          echo          echo
1800          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1801          exit 1          exit 1
1802      else      else
1803          echo -n " $d"          printf "$d "
1804          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1805          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1806      fi      fi
1807  done  done
1808  echo  echo
1809    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1810  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1811      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1812  fi  fi
1813    
1814  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1815      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1816        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1817          EXEDIR=../exe          EXEDIR=../exe
1818      else      else
1819          EXEDIR=.          EXEDIR=.
# Line 936  if test "x${TOOLSDIR}" = x ; then Line 1828  if test "x${TOOLSDIR}" = x ; then
1828      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1829  fi  fi
1830  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1831      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1832      exit 1      exit 1
1833  fi  fi
1834  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1835      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1836        RETVAL=$?
1837        if test "x${RETVAL}" = x0 ; then
1838            S64='$(TOOLSDIR)/set64bitConst.sh'
1839        else
1840            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1841            RETVAL=$?
1842            if test "x${RETVAL}" = x0 ; then
1843                S64='$(TOOLSDIR)/set64bitConst.csh'
1844            else
1845                cat <<EOF
1846    
1847    ERROR: neither of the two default scripts:
1848    
1849        ${TOOLSDIR}/set64bitConst.sh
1850        ${TOOLSDIR}/set64bitConst.csh
1851    
1852      are working so please check paths or specify (with \$S64) a
1853      working version of this script.
1854    
1855    EOF
1856                exit 1
1857            fi
1858        fi
1859  fi  fi
1860  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1861    
# Line 957  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1872  if test -r $ROOTDIR"/eesupp/src/Makefile
1872          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1873      else      else
1874          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1875          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1876          exit 1          exit 1
1877      fi      fi
1878  fi  fi
1879    
1880    #same for pkg/exch2 and pkg/regrid
1881    for pdir in exch2 regrid ; do
1882        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1883            echo "  Making source files in pkg/${pdir} from templates"
1884            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1885            RETVAL=$?
1886            if test "x${RETVAL}" = x0 ; then
1887                rm -f make_${pdir}.errors
1888            else
1889                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1890                cat make_${pdir}.errors 1>&2
1891                exit 1
1892            fi
1893        fi
1894    done
1895    
1896  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1897  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1898      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 1017  else Line 1948  else
1948          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1949          RETVAL=$?          RETVAL=$?
1950          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1951              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1952              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1953              exit 1              exit 1
1954          fi          fi
# Line 1025  else Line 1956  else
1956              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1957          done          done
1958          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1959          expand_pkg_groups          RET=1
1960            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1961          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1962      fi      fi
1963  fi  fi
1964    
1965  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1966    for i in $PACKAGES ; do
1967        echo $i >> ./.tmp_pack
1968    done
1969    for i in `grep  "-" ./.tmp_pack` ; do
1970        j=`echo $i | sed 's/[-]//'`
1971        DISABLE="$DISABLE $j"
1972    done
1973  pack=  pack=
1974  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1975      addit="t"      addit="t"
# Line 1047  PACKAGES="$pack" Line 1986  PACKAGES="$pack"
1986  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1987  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1988  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1989    # Test if each explicitly referenced package exists
1990  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1991      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1992        if test ! -d "$ROOTDIR/pkg/$j" ; then
1993          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1994          exit 1          exit 1
1995      fi      fi
1996      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1997  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1998  PACKAGES=  PACKAGES=
1999  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2000      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2001  done  done
2002    rm -f ./.tmp_pack
2003  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
2004    
2005    #  Check for package MNC: if NetCDF is available, then build the MNC
2006    #  template files ; otherwise, delete mnc from the list of packages.
2007    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
2008    RETVAL=$?
2009    if test "x$RETVAL" = x0 ; then
2010        if test "x$HAVE_NETCDF" != xt ; then
2011            cat <<EOF
2012    
2013    *********************************************************************
2014    WARNING: the "mnc" package was enabled but tests failed to compile
2015      NetCDF applications.  Please check that:
2016    
2017      1) NetCDF is correctly installed for this compiler and
2018      2) the LIBS variable (within the "optfile") specifies the correct
2019           NetCDF library to link against.
2020    
2021      Due to this failure, the "mnc" package is now DISABLED.
2022    *********************************************************************
2023    
2024    EOF
2025            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2026            DISABLE="$DISABLE mnc"
2027        else
2028            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2029            RETVAL=$?
2030            if test "x${RETVAL}" = x0 ; then
2031                rm -f make_mnc.errors
2032            else
2033                echo "Error: problem encountered while building source files in pkg/mnc:"
2034                cat make_mnc.errors 1>&2
2035                exit 1
2036            fi
2037        fi
2038    fi
2039    
2040    #  Check for package PROFILES: if NetCDF is not available,
2041    #  then delete profiles from the list of available packages.
2042    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2043    RETVAL=$?
2044    if test "x$RETVAL" = x0 ; then
2045        if test "x$HAVE_NETCDF" != xt ; then
2046            cat <<EOF
2047    
2048    *********************************************************************
2049    WARNING: the "profiles" package was enabled but tests failed to
2050      compile NetCDF applications.  Please check that:
2051    
2052      1) NetCDF is correctly installed for this compiler and
2053      2) the LIBS variable (within the "optfile") specifies the correct
2054           NetCDF library to link against.
2055    
2056      Due to this failure, the "profiles" package is now DISABLED.
2057    *********************************************************************
2058    
2059    EOF
2060            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2061            DISABLE="$DISABLE profiles"
2062        fi
2063    fi
2064    
2065  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2066  ck=  ck=
2067  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2068      i=0      i=0
2069      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2070      rtot=$nname      rtot=$nname
2071      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2072    
2073          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2074          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1102  while test "x$ck" != xtt ; do Line 2102  while test "x$ck" != xtt ; do
2102    
2103          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2104          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2105                #echo "   " $pname ": need to add :" $dname
2106              in_dis="f"              in_dis="f"
2107              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2108                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1126  while test "x$ck" != xtt ; do Line 2127  while test "x$ck" != xtt ; do
2127              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2128              exit 1              exit 1
2129          fi          fi
2130          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2131            #i=$(( $i + 1 ))
2132      done      done
2133      ck=$ck"t"      ck=$ck"t"
2134  done  done
# Line 1145  for i in $PACKAGES ; do Line 2147  for i in $PACKAGES ; do
2147      fi      fi
2148  done  done
2149    
   
2150  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2151  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2152  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1165  for n in $names ; do Line 2166  for n in $names ; do
2166              fi              fi
2167          done          done
2168          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2169              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2170              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2171          fi          fi
2172      fi      fi
2173  done  done
2174  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2175  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2176      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2177      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2178  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2179    
# Line 1246  fi Line 2247  fi
2247    
2248  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2249  #  compiler.  #  compiler.
2250  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2251      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2252  fi  fi
2253  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2254  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2255      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2256      for j in $list_files ; do      for j in $list_files ; do
2257          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2258      done      done
2259  done  done
2260    if test ! "x"$FS = "x.f" ; then
2261        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2262        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2263    fi
2264    
2265  echo  echo
2266  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2267  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2268  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2269      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2270          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2271      fi      fi
2272  done  done
2273    
2274    if test ! "x$DIVA" = x ; then
2275        echo "  Creating the pseudo-MPI include directory"
2276        INCLUDES="-I./mpi_headers $INCLUDES"
2277        rm -rf ./mpi_headers
2278        mkdir -p ./mpi_headers
2279    
2280        if test "x$MPIINCLUDEDIR" = x ; then
2281            if test "x$MPIHOME" = x ; then
2282                MPIHOME='/usr'
2283            fi
2284            MPIINCLUDEDIR='$MPIHOME/include'
2285        fi
2286        
2287        if test -r $MPIINCLUDEDIR/mpif.h ; then
2288            for i in $MPI_HEADER_FILES; do
2289                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2290            done
2291    
2292            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2293        else
2294            echo " We cannot create a copy of mpif.h!"
2295    #       exit -1
2296        fi
2297    fi
2298    
2299  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2300  rm -rf .links.tmp  rm -rf .links.tmp
2301  mkdir .links.tmp  mkdir .links.tmp
2302    touch .links.tmp/foo
2303    if test ! -r ".links.tmp/foo" ; then
2304        echo
2305        echo "ERROR : something is wrong with your directory permissions or"
2306        echo "   your user file-creation mask (\"umask\") since creating a"
2307        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2308        echo "   not working.  Please try setting your umask to something"
2309        echo "   sane such as:"
2310        echo
2311        echo "      umask 0002"
2312        echo
2313        echo "   and please verify that you have the proper permissions for"
2314        echo "   creating sub-directories and then reading files created"
2315        echo "   within them."
2316        echo
2317        exit 1
2318    fi
2319    rm -f .links.tmp/foo
2320    
2321    if test "x$OPENAD" != x ; then
2322        OAD_DONT_COMPILE="/dev/null"
2323        OAD_DONT_TRANSFORM="/dev/null"
2324        OAD_KEEP_ORIGINAL="/dev/null"
2325        OAD_CB2M_FILES="/dev/null"
2326        echo "  looking for dontCompile file:  "
2327        for i in "." $MODS ; do
2328            if test -r $i"/dontCompile" ; then
2329                OAD_DONT_COMPILE=$i"/dontCompile"
2330                echo "     found $OAD_DONT_COMPILE"
2331                break
2332            fi
2333        done
2334        echo "  looking for dontTransform file:  "
2335        for i in "." $MODS ; do
2336            if test -r $i"/dontTransform" ; then
2337                OAD_DONT_TRANSFORM=$i"/dontTransform"
2338                echo "     found $OAD_DONT_TRANSFORM"
2339                break
2340            fi
2341        done
2342        echo "  looking for keepOriginal file:  "
2343        for i in "." $MODS ; do
2344            if test -r $i"/keepOriginal" ; then
2345                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2346                echo "     found $OAD_KEEP_ORIGINAL"
2347                break
2348            fi
2349        done
2350        echo "  looking for cb2mFiles:  "
2351        for i in "." $MODS ; do
2352            if test -r $i"/cb2mFiles" ; then
2353                OAD_CB2M_FILES=$i"/cb2mFiles"
2354                echo "     found $OAD_CB2M_FILES"
2355                break
2356            fi
2357        done
2358        echo "   OpenAD exceptions:  "
2359    fi
2360    
2361  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2362  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2363  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2364  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2365  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2366  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2367  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2368    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2369  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2370  for d in $alldirs ; do  for d in $alldirs ; do
2371      deplist=      deplist=
2372      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2373      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2374        if test "x$OPENAD" != x ; then
2375            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2376        fi
2377      for sf in $sfiles ; do      for sf in $sfiles ; do
2378          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2379              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2380                    ignore_f=f
2381                  case $d/$sf in                  case $d/$sf in
2382                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2383                            ignore_f=t
2384                          ;;                          ;;
2385                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2386                            ignore_f=t
2387                          ;;                          ;;
2388                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2389                            ignore_f=t
2390                            ;;
2391                      ./BUILD_INFO.h)
2392                            ignore_f=t
2393                            ;;
2394                      ./EMBEDDED_FILES.h)
2395                            ignore_f=t
2396                          ;;                          ;;
2397                    *)                    *)
2398                          touch .links.tmp/$sf                          #  For the local directory *ONLY*,
2399                          deplist="$deplist $sf"                          #  ignore all soft-links
2400                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2401                                ignore_f=t
2402                            else
2403                                touch .links.tmp/$sf
2404                                deplist="$deplist $sf"
2405                            fi
2406                          ;;                          ;;
2407                  esac                  esac
2408                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  if test "x$ignore_f" = xf ; then
2409                  case $extn in                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2410                      F)                      case $extn in
2411                          echo    " \\"  >> srclist.inc                        F)
2412                          echo -n " $sf" >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2413                            printf " $sf" >> F77srclist.tmp
2414                            if test "x$OPENAD" != x ; then
2415                                basename=${sf%%.F}
2416                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2417                                if test -z "$isAD" ; then
2418                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2419                                    if test -z "$toBeIgnored" ; then
2420                                        echo    " \\"  >> nonADF77srclist.tmp
2421                                        printf " $sf" >> nonADF77srclist.tmp
2422                                    else
2423                                        echo "    not to be compiled   :  $sf"
2424                                    fi
2425                                else # file is initially listed as an AD file we want to exclude it
2426                                     # or we want to retain the untransformed version
2427                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2428                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2429                                    if test -n "$notToBeTransformed"; then
2430                                        echo "    not to be transformed:  $sf"
2431                                    fi
2432                                    if test -n "$untransformedVersionToBeKept" ; then
2433                                        echo "    original to be kept  :  $sf"
2434                                    fi    
2435                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2436                                        echo    " \\"  >> nonADF77srclist.tmp
2437                                        printf " $sf" >> nonADF77srclist.tmp
2438                                    fi
2439                                fi
2440                            fi
2441                          ;;                          ;;
2442                      F90)                      F90)
2443                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2444                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2445                          ;;                          ;;
2446                      c)                      c)
2447                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2448                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2449                          ;;                          ;;
2450                      h)                      h)
2451                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2452                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2453                          ;;                          ;;
2454                      flow)                      flow)
2455                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2456                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2457                          ;;                          ;;
2458                  esac                     esac
2459                    fi
2460              fi              fi
2461          fi          fi
2462      done      done
2463      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2464          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2465            echo "" >> srclinks.tmp
2466          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2467          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2468          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2469    # This may happen when make thinks that a header file has to be "remade"
2470    # because a module it depends on has changed.  In this case we do nothing.
2471            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2472          fi
2473      fi      fi
2474  done  done
2475  rm -rf .links.tmp  rm -rf .links.tmp
2476  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2477  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2478  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2479  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2480  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2481    echo "" >> ad_flow_files.tmp
2482    
2483    CMDLINE=$0
2484    for xx in "$@" ; do nw=`echo $xx | wc -w`
2485        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2486                            else CMDLINE="$CMDLINE '$xx'" ; fi
2487    done
2488    
2489  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2490      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2491  fi  fi
2492  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1347  echo "#    $MACHINE" >> $MAKEFILE Line 2495  echo "#    $MACHINE" >> $MAKEFILE
2495  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2496  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2497  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2498  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2499  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2500  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2501    
2502  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2503  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1395  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2543  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2543  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2544    
2545  # These files are created by Makefile  # These files are created by Makefile
2546  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2547  EOF  EOF
2548    
2549  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2550        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2551    else
2552        echo "EMBEDDED_FILES = " >>$MAKEFILE
2553    fi
2554    
2555  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2556  # Unix ln (link)  # Unix ln (link)
2557  LN = ${LN}  LN = ${LN}
# Line 1414  KPP = ${KPP} Line 2565  KPP = ${KPP}
2565  FC = ${FC}  FC = ${FC}
2566  # Fortran compiler  # Fortran compiler
2567  F90C = ${F90C}  F90C = ${F90C}
2568    # C compiler
2569    CC = ${CC}
2570  # Link editor  # Link editor
2571  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2572    
2573  # Defines for CPP  # Defines for CPP
2574  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1425  INCLUDES = ${INCLUDES} Line 2578  INCLUDES = ${INCLUDES}
2578  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2579  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2580  # Optim./debug for FC  # Optim./debug for FC
2581  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2582  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2583  # Optim./debug for FC  # Optim./debug for FC
2584  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2585  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2586    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2587  # Flags for CC  # Flags for CC
2588  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2589  # Files that should not be optimized  # Files that should not be optimized
2590  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2591  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2592  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2593  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2594  # Name of the Mekfile  # Name of the Mekfile
2595  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2596    
2597  EOF  EOF
2598    
2599  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2600  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2601  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2602  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2603  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2604  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2605    
2606  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2607    
2608  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2609    
2610  .SUFFIXES:  # add definitions for preprocessed sources
2611  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2612    # hence the $FS and $FS90 here.
2613    # for fixed format f90 files we use ff90 or FF90 resp
2614    # but these are not expected to be the original source files
2615    
2616    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2617    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2618    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2619    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2620    echo >> $MAKEFILE
2621    echo '.SUFFIXES:' >> $MAKEFILE
2622    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2623    
2624    cat >>$MAKEFILE <<EOF
2625    
2626  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2627  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2628          @echo Creating \$@ ...          @echo Creating \$@ ...
2629          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2630  depend:  depend:
2631          @make links          @make links
2632          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2633          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2634            -rm -f makedepend.out
2635    
2636    lib: libmitgcmuv.a
2637    
2638  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  libmitgcmuv.a: \$(OBJFILES)
2639            ar rcv libmitgcmuv.a \$(OBJFILES)
2640            ar d   libmitgcmuv.a main.o
2641    
2642  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2643    
2644    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2645    
2646  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2647          @printf 'running ... '          @printf 'running ... '
2648          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2649    
2650  clean:  clean:
2651          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2652            -rm -rf *.o
2653            -rm -rf *.$FS *.flowdir
2654            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2655  Clean:  Clean:
2656          @make clean          @make clean
2657          @make cleanlinks          @make cleanlinks
2658          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2659          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak
2660            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2661  CLEAN:  CLEAN:
2662          @make Clean          @make Clean
2663          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2664          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2665          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2666          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2667            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2668            -rm -rf mnc_test_*
2669    
2670  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2671  makefile:  makefile:
2672          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2673  cleanlinks:  cleanlinks:
2674          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2675    
2676  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2677  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2678          @echo Creating \$@ ...          @echo Creating \$@ ...
2679          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2680  AD_CONFIG.h:  AD_CONFIG.h:
2681          @echo Creating \$@ ...          @echo Creating \$@ ...
2682          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2683  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2684          @echo Creating \$@ ...          @echo Creating \$@ ...
2685          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2686    
2687  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2688  .F.f:          @echo Creating \$@ ...
2689    EOF
2690    
2691    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2692    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2693    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2694    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2695    
2696    if test "x$EMBED_SRC" = xt ; then
2697        cat >>$MAKEFILE <<EOF
2698    
2699    decode_files.o : EMBEDDED_FILES.h
2700    
2701    ##  \$(F77_PP_SRC_FILES)
2702    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2703            @echo Creating \$@ ...
2704            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2705            -rm -f all_fF.tar.gz
2706            -gzip all_fF.tar
2707    
2708    EMBEDDED_FILES.h : all_fF.tar.gz
2709            @echo Creating \$@ ...
2710            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2711    
2712    EOF
2713    fi
2714    
2715    cat >>$MAKEFILE <<EOF
2716    
2717    # The normal chain of rules is (  .F - .$FS - .o  )
2718    
2719    ## This nullifies any default implicit rules concerning these two file types:
2720    ## %.o : %.F
2721    
2722    .F.$FS:
2723          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2724  .f.o:  .$FS.o:
2725          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2726  .F90.f90:  .F90.$FS90:
2727          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2728  .f90.o:  .FF90.f$FS90:
2729            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2730    .$FS90.o:
2731          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2732    .f$FS90.o:
2733            cp \$< \$(basename  \$<).f90
2734            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2735  .c.o:  .c.o:
2736          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2737    .flow.flowdir:
2738            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2739    
2740  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2741  .F.p:  .F.p:
2742          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2743  .p.f:  .p.$FS:
2744          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2745    
2746    EOF
2747    
2748  #=========================================  #=========================================
2749  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2750    #===  for TAMC/TAF  ======================
2751    
2752    if test "x$OPENAD" = x ; then
2753    
2754    cat >>$MAKEFILE <<EOF
2755    
2756  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2757  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1542  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2766  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2766  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2767  for i in $ad_vars ; do  for i in $ad_vars ; do
2768      name=$i      name=$i
2769      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2770      eval $t1      eval $t1
2771      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2772      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2773  done  done
2774    
2775  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2776  echo >> $MAKEFILE  echo >> $MAKEFILE
2777  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2778  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2779  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2780      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2781      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2782  done  done
2783  echo >> $MAKEFILE  echo >> $MAKEFILE
2784  rm -f ad_files  rm -f adSrcFiles.tmp
2785    
2786  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2787    
2788  # ... AD ...  # ... AD ...
2789  adall: ad_taf  adall: \$(EXE_AD)
2790  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2791  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2792    
2793  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2794          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2795          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2796          -rm -f ad_config.template          -rm -f ad_config.template
2797          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2798          @make \$(AD_FLOW_FILES)          @make \$(FLOFILES)
2799          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2800    
2801  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2802          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2803          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2804            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2805    
2806  adtafonly:  adtafonly:
2807          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2808          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
2809            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2810  ad_taf: ad_taf_output.o \$(OBJFILES)  
2811          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2812            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2813  ad_tamc_output.f: ad_input_code.f  
2814          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2815          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2816            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2817    
2818  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2819          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2820    
2821    adonlyfwd:
2822            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2823    
2824    adtrick:
2825            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2826    
2827  # ... FTL ...  # ... FTL ...
2828  ftlall: ftl_taf  ftlall: ftl_taf
2829  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2830  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2831    
2832  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2833          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2834          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2835          -rm -f ftl_config.template          -rm -f ftl_config.template
2836          @make \$(F77FILES)          @make \$(F77_PP_SRC_FILES)
2837          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2838          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2839    
2840  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2841          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2842          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2843            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2844    
2845  ftltafonly:  ftltafonly:
2846          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2847          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_ftl.$FS
2848            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2849    
2850  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2851          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2852    
2853  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2854          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2855          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2856    
2857  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2858          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2859    
2860    
2861  # ... SVD ...  # ... SVD ...
2862  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2863  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2864            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2865    svdall: svd_touch svd_taf
2866    
2867  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2868          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2869    
2870            @echo "--->>> Only COMPILE svd code! <<<---"
2871            @echo "--->>> Assumes you previously <<<---"
2872            @echo "--->>> did make svdtaf        <<<---"
2873    
2874    svd_touch:
2875            @echo "--->>> Only COMPILE svd code! <<<---"
2876            @echo "--->>> Assumes you previously <<<---"
2877            @echo "--->>> did make svdtaf        <<<---"
2878            touch ad_taf_output.$FS ftl_taf_output.$FS
2879            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2880            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2881            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2882            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2883            -rm -f ftl_config.template
2884    
2885  #=========================================  EOF
2886    
2887    fi
2888    
2889    #===  for OpenAD  ========================
2890    
2891    if test "x$OPENAD" != x ; then
2892    
2893    # ============ begin OpenAD specific section ==============
2894    
2895    cat >>$MAKEFILE <<EOF
2896    
2897    # all the source files linked from the various locations:
2898    ALL_LINKED_FILES= \
2899    \$(F77_SRC_FILES) \
2900    \$(C_SRC_FILES) \
2901    \$(H_SRC_FILES) \
2902    \$(F90_SRC_FILES) \
2903    \$(SPECIAL_FILES)
2904    
2905    ifndef OPENADROOT
2906      \$(error "Error:  environment variable OPENADROOT not defined!")
2907    endif
2908    
2909    ifndef XAIFSCHEMAROOT
2910      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2911    endif
2912    
2913    ifndef XAIFBOOSTERROOT
2914      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2915    endif
2916    
2917    EOF
2918    
2919    echo "  Add the source list for common block to module conversion "
2920    echo >> $MAKEFILE
2921    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
2922    for i in `cat ${OAD_CB2M_FILES}` ; do
2923      echo    " \\" >> $MAKEFILE
2924      printf " $i" >> $MAKEFILE
2925    done
2926    echo >> $MAKEFILE
2927    
2928    echo "  Add the source list for AD code generation"
2929    echo >> $MAKEFILE
2930    printf "AD_FILES = " >> $MAKEFILE
2931    for i in `cat ${OAD_CB2M_FILES}` ; do
2932      echo    " \\" >> $MAKEFILE
2933      printf " ${i}_mod.f$FS90" >> $MAKEFILE
2934    done
2935    AD_FILES=`cat adSrcFiles.tmp`
2936    for i in $AD_FILES ; do
2937      basename=${i%%.f}
2938      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
2939      if test -z "$toBeIgnored" ; then
2940        echo    " \\" >> $MAKEFILE
2941        printf " $i" >> $MAKEFILE
2942      fi
2943    done
2944    echo >> $MAKEFILE
2945    rm -f adSrcFiles.tmp
2946    
2947    cat >>$MAKEFILE <<EOF
2948    
2949    adAll: \$(EXE_AD)
2950    .PHONY: adAll
2951    
2952    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
2953    
2954    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
2955    
2956    .PHONY: adDepend
2957    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
2958            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2959            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2960            -rm -f makedepend.out
2961    
2962    OPENAD_SUPPORT_F90_SRC_FILES = \
2963    w2f__types.F90 \
2964    OAD_active.F90 \
2965    OAD_cp.F90 \
2966    OAD_rev.F90 \
2967    OAD_tape.F90        
2968    
2969    OPENAD_SUPPORT_C_SRC_FILES = \
2970    iaddr.c \
2971    timeRatio.c
2972    
2973    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
2974            cat \$^ > \$@
2975    
2976    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
2977            cat \$^ > \$@
2978    
2979    f95_test.out: f95_test_mods.f90 f95_test.f90
2980            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
2981            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
2982    
2983    # the file included below is created by the
2984    # postProcessor and its inclusion sets the
2985    # variable POSTPROCESSEDFILES
2986    # used below. Because the file is made during
2987    # make it won't be read until the second (recursive)
2988    # invocation in the rule below
2989    -include postProcess.make
2990    
2991    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
2992    
2993    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
2994    
2995    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
2996    ifeq (\$(MAKELEVEL),0)
2997            \$(MAKE) adAll
2998    else
2999            touch \$@
3000    endif
3001    
3002    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3003    ifeq (\$(MAKELEVEL),1)
3004            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3005    else
3006            touch \$@
3007    endif
3008    
3009    # makefile debug rule
3010    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3011    .PHONY: openad
3012    
3013    # create the module files
3014    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3015            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3016    
3017    # create the header files
3018    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3019            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3020    
3021    # change everybody else to use the new module files:
3022    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3023            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3024    
3025    # makefile debug rule
3026    small_f: \$(CB2M_F90_PP_SRC_FILES)
3027    .PHONY: small_f
3028    
3029    ad_output.txt: \$(EXE_AD)
3030            @printf 'linking data files ... '
3031            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3032            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3033            @printf 'running ... '
3034            @./\$(EXE_AD) > \$@
3035    
3036    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3037    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3038            cat \$^ > \$@
3039    
3040    # strip all comments and blanks to reduce
3041    # the file size in order to reduce perl's memory requirements
3042    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3043            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3044    
3045    # mfef90 preprocessing
3046    # expand statement functions
3047    # expose mfef90 specific substring handling
3048    # add the w2f__types module
3049    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3050            ./mfef90 -r8 -z -F -N132 \$<
3051            mv \$<.B \$(basename \$<).B
3052            ./whirl2f -openad \$(basename \$<).B
3053            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3054    
3055    # canonicalizer
3056    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3057            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3058    
3059    # F -> WHIRL
3060    # note that the canonicalized version cuts off at col 72
3061    # doing this also for string constants which is ok as long
3062    # as we are in fixed mode and cut of exactly there.
3063    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3064    # characters respectively.
3065    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3066            ./mfef90 -r8 -z -F \$<
3067            mv \$<.B \$@
3068    
3069    # WHIRL -> XAIF
3070    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3071            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3072    
3073    # XAIF -> XAIF'
3074    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3075            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3076    
3077    # XAIF' -> WHIRL'
3078    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3079            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3080    
3081    # WHIRL' -> F'
3082    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3083            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3084    
3085    # insert template directives
3086    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3087            ../OAD_support/insertTemplateDir.bash \$< \$@
3088    
3089    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3090    # postprocess F'
3091    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3092            # the target is a placeholder to signal execution of the rule
3093            touch \$@
3094            # this step also creates the file postProcess.make but we cannot
3095            # name it as the target or else make will try to remake it for
3096            # the include directive above for any rule, e.g. make clean
3097            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3098    
3099    # setup some links
3100    %.xsd:
3101            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3102    
3103    mfef90:
3104            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3105    
3106    # link the support files:
3107    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3108            \$(LN) ../OAD_support/\$@ .
3109    
3110    whirl2xaif xaif2whirl:
3111            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3112    
3113    preProcess.py postProcess.py:
3114            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3115    
3116    whirl2f whirl2f_be:
3117            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3118    
3119    oadDriver:
3120            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3121    
3122    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3123    
3124    # ============ end OpenAD specific section ==============
3125    
3126  EOF  EOF
3127    
3128    fi
3129    
3130    #=========================================
3131    
3132  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3133      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3134  fi  fi
# Line 1648  for i in $KPPFILES ; do Line 3140  for i in $KPPFILES ; do
3140      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3141          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3142      fi      fi
3143      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3144  done  done
3145    
3146  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1658  for i in $NOOPTFILES ; do Line 3150  for i in $NOOPTFILES ; do
3150      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3151          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3152      fi      fi
3153      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3154      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3155  done  done
3156    
# Line 1672  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3164  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3164  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3165    
3166  # Create special header files  # Create special header files
3167  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3168  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3169      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3170  else  else
3171      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3172      RETVAL=$?      RETVAL=$?
3173      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
3174          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1686  else Line 3178  else
3178      fi      fi
3179  fi  fi
3180  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3181      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3182  fi  fi
3183    
3184    
3185  #  Write the "state" for future records  #  Write the "state" for future records
3186  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
3187      echo -n "" > genmake_state      printf "" > genmake_state
3188      for i in $gm_state ; do      for i in $gm_state ; do
3189          t1="t2=\$$i"          t1="t2=\$$i"
3190          eval $t1          eval $t1

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