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revision 1.1 by edhill, Sat Aug 16 14:01:08 2003 UTC revision 1.56 by edhill, Sat Dec 6 23:33:10 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20    }
21    
22    # Search for particular CPP #cmds associated with MPI
23    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24    test_for_mpi_in_cpp_eeoptions() {
25        cpp_options=$1
26        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38        RETVAL=$?
39        if test "x${RETVAL}" = x0 ; then
40            echo -n "Error: In $file there is an illegal line: "
41            grep -i "$strng" $file
42            return 1
43        fi
44        return 0
45    }
46    
47    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
48    # the package list.
49    expand_pkg_groups() {
50        new_packages=
51        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52        if test -r $PKG_GROUPS ; then
53            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55            matched=0
56            for i in $PACKAGES ; do
57                line=`grep "^ *$i" ./p2.tmp`
58                RETVAL=$?
59                if test "x$RETVAL" = x0 ; then
60                    matched=1
61                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                    echo "    replacing \"$i\" with: $replace"
63                    new_packages="$new_packages $replace"
64                else
65                    new_packages="$new_packages $i"
66                fi
67            done
68            PACKAGES=$new_packages
69            rm -f ./p[1,2].tmp
70        else
71            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
72        fi
73    }
74    
75  # Guess possible config options for this host  # Guess possible config options for this host
76  find_possible_configs()  {  find_possible_configs()  {
77    
78      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
79      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82      p_LN=      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85        echo "  The platform appears to be:  $PLATFORM"
86        
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
89      RETVAL=$?      RETVAL=$?
90      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
91          p_LN="ln -s"          LN="ln -s"
92        else
93            echo "Error: \"ln -s\" does not appear to work on this system!"
94            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
95            exit 1
96      fi      fi
97      rm -f test link      rm -f test link
98    
99      p_CPP=`which cpp`      if test "x$CPP" = x ; then
100                CPP="cpp -traditional -P"
101      RETVAL=$?      fi
102      if test "x${RETVAL}" = x0 ; then  
103          p_LN="ln -s"      # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111      fi      fi
     rm -f test link  
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      for c in $tmp ; do
117          which $c > /dev/null 2>&1          rm -f ./hello.f ./hello
118            cat >> hello.f <<EOF
119          program hello
120          do i=1,3
121            print *, 'hello world : ', i
122          enddo
123          end
124    EOF
125            $c -o hello hello.f > /dev/null 2>&1
126          RETVAL=$?          RETVAL=$?
127          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          echo "  None found!!!"          cat 1>&2 <<EOF
134      else  
135          echo "  "$p_FC  Error: No Fortran compilers were found in your path.  Please specify one using:
136      fi  
137        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
138        2) a command-line option (eg. "-fc NAME"), or
139        3) the MITGCM_FC environment variable.
140    
     # look for possible MPI libraries  
     mpi_libs=  
     mpi_fort=`which mpif77 2>/dev/null`  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         cat >>test.f <<EOF  
       PROGRAM HELLO  
       DO 10, I=1,10  
       PRINT *,'Hello World'  
    10 CONTINUE  
       STOP  
       END  
141  EOF  EOF
142          eval "$mpi_fort -showme test.f > out"          exit 1
143          RETVAL=$?      else
144          if test "x${RETVAL}" = x0 ; then          echo "  The possible FORTRAN compilers found in your path are:"
145              a=`cat out`          echo "   "$p_FC
146              for i in $a ; do          if test "x$FC" = x ; then
147                  case $i in              FC=`echo $p_FC | $AWK '{print $1}'`
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
148          fi          fi
         rm -f test.f out  
149      fi      fi
150    
151  }      for i in $p_FC ; do
152            p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
153            if test -r $p_OF ; then
154                OPTFILE=$p_OF
155                echo "  The options file:  $p_OF"
156                echo "    appears to match so we'll use it."
157                break
158            fi
159        done
160        if test "x$OPTFILE" = x ; then
161            cat 1>&2 <<EOF
162    
163  parse_options()  {  Error: No options file was found in:  $ROOTDIR/tools/build_options/
164      that matches this platform ("$PLATFORM") and the compilers found in
165      your path.  Please specify an "optfile" using:
166    
167      ac_prev=      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
168      for ac_option in "${OPTIONS[@]}" ; do      2) the MITGCM_OF environment variable.
169    
170      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
171    
172    EOF
173            exit 1
174        fi
175        
176    #     # look for possible MPI libraries
177    #     mpi_libs=
178    #     mpi_fort=`which mpif77 2>/dev/null`
179    #     RETVAL=$?
180    #     if test "x${RETVAL}" = x0 ; then
181    #       cat >>test.f <<EOF
182    #       PROGRAM HELLO
183    #       DO 10, I=1,10
184    #       PRINT *,'Hello World'
185    #    10 CONTINUE
186    #       STOP
187    #       END
188    # EOF
189    #       eval "$mpi_fort -showme test.f > out"
190    #       RETVAL=$?
191    #       if test "x${RETVAL}" = x0 ; then
192    #           a=`cat out`
193    #           for i in $a ; do
194    #               case $i in
195    #                   -*)
196    #                       mpi_libs="$mpi_libs $i" ;;
197    #               esac
198    #           done
199    #           echo "The MPI libs appear to be:"
200    #           echo "  "$mpi_libs
201    #       fi
202    #       rm -f test.f out
203    #     fi
204    
         # echo "ac_option = :$ac_option:"  
           
         # If the previous option needs an argument, assign it.  
         if test -n "$ac_prev"; then  
             eval "$ac_prev=\$ac_option"  
             ac_prev=  
             continue  
         fi  
           
         ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`  
           
         case $ac_option in  
               
             -help | --help | -h | --h)  
                 usage ;;  
               
             -nooptfile | --nooptfile)  
                 OPTFILE="NONE" ;;  
             -optfile | --optfile | -of | --of)  
                 ac_prev=optfile ;;  
             -optfile=* | --optfile=* | -of=* | --of=*)  
                 OPTFILE=$ac_optarg ;;  
               
             -pdepend | --pdepend)  
                 ac_prev=pdepend ;;  
             -pdepend=* | --pdepend=*)  
                 PDEPEND=$ac_optarg ;;  
               
             -pdefault | --pdefault)  
                 ac_prev=pdefault ;;  
             -pdefault=* | --pdefault=*)  
                 PDEFAULT=$ac_optarg ;;  
               
             -makefile | -ma)  
                 ac_prev=makefile ;;  
             --makefile=* | -ma=*)  
                 MAKEFILE=$ac_optarg ;;  
               
             -platform | --platform | -pl | --pl)  
                 ac_prev=platform ;;  
             -platform=* | --platform=* | -pl=* | --pl=*)  
                 PLATFORM=$ac_optarg ;;  
   
             -rootdir | --rootdir | -rd | --rd)  
                 ac_prev=rootdir ;;  
             -rootdir=* | --rootdir=* | -rd=* | --rd=*)  
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
205  }  }
206    
207  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 210  get_pdepend_list()  {
210      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
211      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 210  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo ""  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"$'\n'  Usage: "$0" [OPTIONS]
227      echo "    -help | --help | -h | --h"    where [OPTIONS] can be:
228      echo "    -nooptfile | --nooptfile"  
229      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"      -help | --help | -h | --h
230      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"            Print this help message and exit.
231      echo "    -pdepend NAME | --pdepend NAME"  
232      echo "      -pdepend=NAME | --pdepend=NAME"      -nooptfile | --nooptfile
233      echo "    -pdefault NAME | --pdefault NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "      -pdefault=NAME | --pdefault=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "    -makefile NAME | -ma NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "      --makefile=NAME | -ma=NAME"            made to find an appropriate "standard" optfile in the
237      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            tools/build_options/ directory.
238      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  
239      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      -pdepend NAME | --pdepend NAME
240      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"            Get package dependency information from "NAME".
242      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
243      echo "    -disable NAME | --disable NAME"      -pdefault NAME | --pdefault NAME
244      echo "      -disable=NAME | --disable=NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "    -enable NAME | --enable NAME"            Get the default package list from "NAME".
246      echo "      -enable=NAME | --enable=NAME"  
247      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
248      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
249  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
250  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
251      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
252      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
253      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
254      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
255      echo "    -[no]jam | --[no]jam"$'\n'  
256      echo "  and NAME is a string such as:"$'\n'      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"$'\n'            By default, genamke will try to find the location by
260      echo "  which, depending upon your shell, may need to be single-quoted"            looking in parent directories (up to the 5th parent).
261      echo "  if it contains spaces, dashes, or other special characters."  
262        -mods NAME | --mods NAME | -mo NAME | --mo NAME
263          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264              Here, "NAME" specifies a list of directories that are
265              used for additional source code.  Files found in the
266              "mods list" are given preference over files of the same
267              name found elsewhere.
268    
269        -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  # Dump all important state  #  Build a CPP macro to automate calling C routines from FORTRAN
316  dump_state()  {  get_fortran_c_namemangling()  {
317      fname=$1      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318      echo " " > $fname      
319        cat > genmake_test.c <<EOF
320    void tcall( char * string ) { tsub( string ); }
321    EOF
322        $MAKE genmake_test.o >> genmake_warnings 2>&1
323      RETVAL=$?      RETVAL=$?
324      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" != x0 ; then
325          echo "Error: cannot write to $fname"          FC_NAMEMANGLE=$default_nm
326          exit 1          cat <<EOF>> genmake_errors
327    
328    WARNING: C test compile fails
329    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331    EOF
332            return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363      fi      fi
364      echo "makefile "$makefile > $fname      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375        fi
376    
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398  }  }
399    
400    
401  #eh3 # This is the generic configuration.  check_HAVE_CLOC()  {
402  #eh3 set LN         = ( 'ln -s' )      get_fortran_c_namemangling
403  #eh3 set CPP        = ( '/lib/cpp -P' )      cat <<EOF > genmake_tc_1.c
404  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  $FC_NAMEMANGLE
405  #eh3 set KPP        = (  )  #include <stdio.h>
406  #eh3 set FC         = ( 'f77' )  #include <stdlib.h>
407  #eh3 set LINK       = $FC  #include <unistd.h>
408  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <assert.h>
409  #eh3 set INCLUDES   = ( -I. )  #include <sys/time.h>
410  #eh3 set FFLAGS     = (  )  void FC_NAMEMANGLE(cloc) ( double *curtim )
411  #eh3 set FOPTIM     = (  )  {
412  #eh3 set CFLAGS     = (  )   struct timeval tv1;
413  #eh3 set KFLAGS1    = (  )   gettimeofday(&tv1 , (void *)NULL );
414  #eh3 set KFLAGS2    = (  )   *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415  #eh3 set LIBS       = (  )   *curtim = *curtim/1.E6;
416  #eh3 set KPPFILES   = (  )  }
417  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
418  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440  #  Set defaults here  #  Set defaults here
441    COMMANDL="$0 $@"
442    
443  PLATFORM=  PLATFORM=
444  LN=  LN=
445  S64=  S64=
446  KPP=  KPP=
447  FC=  FC=
448  LINK=  LINK=
449    # DEFINES="-DWORDLENGTH=4"
450    DEFINES=
451  PACKAGES=  PACKAGES=
452  ENABLE=  ENABLE=
453  DISABLE=  DISABLE=
454  MAKEFILE=  MAKEFILE=
455  MAKEDEPEND=  MAKEDEPEND=
456  PDEPEND=  PDEPEND=
457    DUMPSTATE=t
458  PDEFAULT=  PDEFAULT=
459  OPTFILE=  OPTFILE=
460  INCLUDES=-I.  INCLUDES="-I."
461  FFLAGS=  FFLAGS=
462  FOPTIM=  FOPTIM=
463  CFLAGS=  CFLAGS=
# Line 309  KPPFILES= Line 468  KPPFILES=
468  NOOPTFILES=  NOOPTFILES=
469  NOOPTFLAGS=  NOOPTFLAGS=
470    
471    # DEFINES checked by test compilation
472    HAVE_SYSTEM=
473    HAVE_FDATE=
474    FC_NAMEMANGLE=
475    HAVE_CLOC=
476    
477  MODS=  MODS=
478  TOOLSDIR=  TOOLSDIR=
479  SOURCEDIRS=  SOURCEDIRS=
480  INCLUDEDIRS=  INCLUDEDIRS=
481    STANDARDDIRS=
482    
483  PWD=`pwd`  PWD=`pwd`
484  MAKE=make  MAKE=make
485    AWK=awk
486  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
487  THISCWD=`pwd`  THISCWD=`pwd`
488  THISDATE=`date`  THISDATE=`date`
489  MACHINE=`uname -a`  MACHINE=`uname -a`
490    EXECUTABLE=
491    EXEHOOK=
492    EXEDIR=
493    PACKAGES_CONF=
494    IEEE=
495    if test "x$MITGCM_IEEE" != x ; then
496        IEEE=$MITGCM_IEEE
497    fi
498    
499    AUTODIFF_PKG_USED=f
500    AD_OPTFILE=
501    TAF=
502    AD_TAF_FLAGS=
503    FTL_TAF_FLAGS=
504    SVD_TAF_FLAGS=
505    TAF_EXTRA=
506    TAMC=
507    AD_TAMC_FLAGS=
508    FTL_TAF_FLAGS=
509    SVD_TAMC_FLAGS=
510    TAMC_EXTRA=
511    
512    
513    #  The following state can be set directly by command-line switches
514    gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
515    gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
516    
517    #  The following state is not directly set by command-line switches
518    gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
519    gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
520    gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
521    gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
522    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
523    
524    #  The following are all related to adjoint/tangent-linear stuff
525    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
526    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
527    gm_s12="TAF_EXTRA TAMC_EXTRA"
528    
529    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
530    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
531    
532    cat <<EOF
533    
534    GENMAKE :
535    
536  echo $'\n'"===  Processing options files and arguments  ==="  A program for GENerating MAKEfiles for the MITgcm project.  For a
537  gm_local="./gm_local"  quick list of options, use "genmake -h" or for more detail see:
538    
539      http://mitgcm.org/devel_HOWTO/
540    
541    EOF
542    
543    echo "===  Processing options files and arguments  ==="
544    gm_local="genmake_local"
545    for i in . $MODS ; do
546        if test -r $i/$gm_local ; then
547            . $i/$gm_local
548            break
549        fi
550    done
551  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
552  if test -e $gm_local ; then  if test -e $gm_local ; then
553      echo "using $gm_local"      echo "using $gm_local"
554      source $gm_local      . $gm_local
555      echo "DISABLE=$DISABLE"$'\n'"ENABLE=$ENABLE"      # echo "DISABLE=$DISABLE"
556        # echo "ENABLE=$ENABLE"
557  else  else
558      echo "none found"      echo "none found"
559  fi  fi
560    
561  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"
562  OPTIONS=()  #OPTIONS=
563  n=0  #n=0
564  for i ; do  #for i ; do
565     setvar="OPTIONS[$n]='$i'"  #   echo "$i  $n"
566     #  echo "  $setvar"  #   setvar="OPTIONS[$n]='$i'"
567     eval "$setvar"  #   #  echo "  $setvar"
568     n=$(( $n + 1 ))  #   eval "$setvar"
569  done  #   n=$(( $n + 1 ))
570  parse_options  #done
571    #parse_options
572  echo "  getting OPTFILE information:  "  ac_prev=
573  if test "x${OPTFILE}" = x ; then  for ac_option ; do
574      echo "Warning: no OPTFILE specified so we'll look for possible settings"  
575      echo $'\n'"===  Searching for possible settings for OPTFILE  ==="      # If the previous option needs an argument, assign it.
576      find_possible_configs      if test -n "$ac_prev"; then
577  else          eval "$ac_prev=\$ac_option"
578      if test "x$OPTFILE" = xNONE ; then          ac_prev=
579          echo "    OPTFILE=NONE so we'll try to use default settings"          continue
     else  
         if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  
             echo "    using OPTFILE=\"$OPTFILE\""  
             source "$OPTFILE"  
             RETVAL=$?  
             if test "x$RETVAL" != x0 ; then  
                 echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
                 echo "--please check that variable syntax is bash-compatible"  
                 exit 1  
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
             exit 1  
         fi  
580      fi      fi
581  fi      
582        ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
583        
584        case $ac_option in
585            
586            -help | --help | -h | --h)
587                usage ;;
588            
589            -nooptfile | --nooptfile)
590                OPTFILE="NONE" ;;
591            -optfile | --optfile | -of | --of)
592                ac_prev=OPTFILE ;;
593            -optfile=* | --optfile=* | -of=* | --of=*)
594                OPTFILE=$ac_optarg ;;
595            
596            -adoptfile | --adoptfile | -adof | --adof)
597                ac_prev=AD_OPTFILE ;;
598            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
599                AD_OPTFILE=$ac_optarg ;;
600            
601            -pdepend | --pdepend)
602                ac_prev=PDEPEND ;;
603            -pdepend=* | --pdepend=*)
604                PDEPEND=$ac_optarg ;;
605            
606            -pdefault | --pdefault)
607                ac_prev=PDEFAULT ;;
608            -pdefault=* | --pdefault=*)
609                PDEFAULT=$ac_optarg ;;
610            
611            -make | --make | -m | --m)
612                ac_prev=MAKE ;;
613            -make=* | --make=* | -m=* | --m=*)
614                MAKE=$ac_optarg ;;
615            
616            -makefile | --makefile | -ma | --ma)
617                ac_prev=MAKEFILE ;;
618            -makefile=* | --makefile=* | -ma=* | --ma=*)
619                MAKEFILE=$ac_optarg ;;
620            
621            -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
622                echo "ERROR: The platform option has been removed.  Please specify"
623                echo "  the build options using the \"optfile\" mechanism."
624                echo
625                usage
626                ;;
627            
628            -rootdir | --rootdir | -rd | --rd)
629                ac_prev=ROOTDIR ;;
630            -rootdir=* | --rootdir=* | -rd=* | --rd=*)
631                ROOTDIR=$ac_optarg ;;
632            
633            -mods | --mods | -mo | --mo)
634                ac_prev=MODS ;;
635            -mods=* | --mods=* | -mo=* | --mo=*)
636                MODS=$ac_optarg ;;
637            
638            -disable | --disable)
639                ac_prev=DISABLE ;;
640            -disable=* | --disable=*)
641                DISABLE=$ac_optarg ;;
642            
643            -enable | --enable)
644                ac_prev=ENABLE ;;
645            -enable=* | --enable=*)
646                ENABLE=$ac_optarg ;;
647            
648            -standarddirs | --standarddirs)
649                ac_prev=STANDARDDIRS ;;
650            -standarddirs=* | --standarddirs=*)
651                STANDARDDIRS=$ac_optarg ;;
652    
653  echo $'\n'"===  Setting defaults  ==="  #           -cpp | --cpp)
654  echo -n "  Adding MODS directories:  "  #               ac_prev=cpp ;;
655  for d in $MODS ; do  #           -cpp=* | --cpp=*)
656      if test ! -d $d ; then  #               CPP=$ac_optarg ;;
657          echo $'\n\n'"Error: MODS directory \"$d\" not found!"              
658          exit 1          -fortran | --fortran | -fc | --fc)
659      else              ac_prev=FC ;;
660          echo -n " $d"          -fc=* | --fc=*)
661          SOURCEDIRS="$SOURCEDIRS $d"              FC=$ac_optarg ;;
662          INCLUDEDIRS="$INCLUDEDIRS $d"          
663      fi          -ieee | --ieee)
664                IEEE=true ;;
665            -noieee | --noieee)
666                IEEE= ;;
667            
668    #       -jam | --jam)
669    #           JAM=1 ;;
670    #       -nojam | --nojam)
671    #           JAM=0 ;;
672            
673            -ds | --ds)
674                DUMPSTATE=t ;;
675            
676            -taf_extra | --taf_extra)
677                ac_prev=TAF_EXTRA ;;
678            -taf_extra=* | --taf_extra=*)
679                TAF_EXTRA=$ac_optarg ;;
680    
681            -tamc_extra | --tamc_extra)
682                ac_prev=TAMC_EXTRA ;;
683            -tamc_extra=* | --tamc_extra=*)
684                TAMC_EXTRA=$ac_optarg ;;
685    
686            -*)
687                echo "Error: unrecognized option: "$ac_option
688                usage
689                ;;
690            
691            *)
692                echo "Error: unrecognized argument: "$ac_option
693                usage
694                ;;
695            
696        esac
697        
698  done  done
 echo  
699    
700  if test "x$MAKEFILE" = x ; then  if test -f ./.genmakerc ; then
701      MAKEFILE="Makefile"      echo
702  fi      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
703  if test "x${PLATFORM}" = x ; then      echo "  file.  This file format is no longer supported.  Please see:"
704      PLATFORM=$p_PLATFORM      echo
705        echo "    http://mitgcm.org/devel_HOWTO/"
706        echo
707        echo "  for directions on how to setup and use the new \"genmake2\" input"
708        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
709        echo
710  fi  fi
711    
712  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
# Line 414  if test ! -d ${ROOTDIR} ; then Line 734  if test ! -d ${ROOTDIR} ; then
734      exit 1      exit 1
735  fi  fi
736    
737    echo "  getting OPTFILE information:  "
738    if test "x${OPTFILE}" = x ; then
739        if test "x$MITGCM_OF" = x ; then
740            echo "Warning: no OPTFILE specified so we'll look for possible settings"
741            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
742            find_possible_configs
743        else
744            OPTFILE=$MITGCM_OF
745        fi
746    fi
747    if test "x$OPTFILE" != xNONE ; then
748        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
749            echo "    using OPTFILE=\"$OPTFILE\""
750            . "$OPTFILE"
751            RETVAL=$?
752            if test "x$RETVAL" != x0 ; then
753                echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
754                echo "--please check that variable syntax is bash-compatible"
755                exit 1
756            fi
757            if test "x$DUMPSTATE" != xf ; then
758                cp -f $OPTFILE "genmake_optfile"
759            fi
760        else
761            echo "Error: can't read OPTFILE=\"$OPTFILE\""
762            exit 1
763        fi
764    fi
765    
766    echo "  getting AD_OPTFILE information:  "
767    if test "x${AD_OPTFILE}" = x ; then
768        if test "x$MITGCM_AD_OF" = x ; then
769            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
770        else
771            AD_OPTFILE=$MITGCM_AD_OF
772        fi
773    fi
774    if test "x${AD_OPTFILE}" != xNONE ; then
775        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
776            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
777            . "$AD_OPTFILE"
778            RETVAL=$?
779            if test "x$RETVAL" != x0 ; then
780                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
781                echo "--please check that variable syntax is bash-compatible"
782                exit 1
783            fi
784            if test "x$DUMPSTATE" != xf ; then
785                cp -f $AD_OPTFILE "genmake_ad_optfile"
786            fi
787        else
788            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
789            exit 1
790        fi
791    fi
792    
793    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
794    #  either set defaults or complain and abort!
795    if test "x$FC" = x ; then
796        cat <<EOF 1>&2
797    
798    Error: no Fortran compiler: please specify using one of the following:
799      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
800      2) the "-fc=XXX" command-line option
801      3) the "./genmake_local" file
802    EOF
803        exit 1
804    fi
805    if test "x$LINK" = x ; then
806        LINK=$FC
807    fi
808    if test "x$CPP" = x ; then
809        CPP="cpp"
810    fi
811    if test "x$MAKE" = x ; then
812        MAKE="make"
813    fi
814    echo "#define A a" | $CPP > test_cpp 2>&1
815    RETVAL=$?
816    if test "x$RETVAL" != x0 ; then
817        cat <<EOF 1>&2
818    
819    Error: C pre-processor "$CPP" failed the test case: please specify using:
820    
821      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
822      2) the "./genmake_local" file
823      3) with the CPP environment variable
824    
825    EOF
826        exit 1
827    else
828        rm -f test_cpp
829    fi
830    if test "x$MAKEDEPEND" = x ; then
831        MAKEDEPEND=makedepend
832    fi
833    if test "x$LN" = x ; then
834        LN="ln -s"
835    fi
836    echo "test" > genmake_test_ln
837    $LN genmake_test_ln genmake_tlink
838    RETVAL=$?
839    if test "x$RETVAL" != x0 ; then
840        cat <<EOF 1>&2
841    
842    Error: The command "ln -s" failed -- please specify a working soft-link
843      command in the optfile.
844    
845    EOF
846        exit 1
847    fi
848    rm -f genmake_test_ln genmake_tlink
849    
850    
851    printf "\n===  Checking system libraries  ===\n"
852    echo -n "  Do we have the system() command using $FC...  "
853    cat > genmake_tcomp.f <<EOF
854          program hello
855          call system('echo hi')
856          end
857    EOF
858    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
859    RETVAL=$?
860    if test "x$RETVAL" = x0 ; then
861        HAVE_SYSTEM=t
862        DEFINES="$DEFINES -DHAVE_SYSTEM"
863        echo "yes"
864    else
865        HAVE_SYSTEM=
866        echo "no"
867    fi
868    rm -f genmake_tcomp*
869    
870    echo -n "  Do we have the fdate() command using $FC...  "
871    cat > genmake_tcomp.f <<EOF
872          program hello
873          CHARACTER(128) string
874          string = ' '
875          call fdate( string )
876          print *, string
877          end
878    EOF
879    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
880    RETVAL=$?
881    if test "x$RETVAL" = x0 ; then
882        HAVE_FDATE=t
883        DEFINES="$DEFINES -DHAVE_FDATE"
884        echo "yes"
885    else
886        HAVE_FDATE=
887        echo "no"
888    fi
889    rm -f genmake_tcomp*
890    
891    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
892    check_HAVE_CLOC
893    if test "x$HAVE_CLOC" != x ; then
894        echo "yes"
895    else
896        echo "no"
897    fi
898    rm -f genmake_t*
899    
900    
901    printf "\n===  Setting defaults  ===\n"
902    echo -n "  Adding MODS directories:  "
903    for d in $MODS ; do
904        if test ! -d $d ; then
905            echo
906            echo "Error: MODS directory \"$d\" not found!"
907            exit 1
908        else
909            echo -n " $d"
910            SOURCEDIRS="$SOURCEDIRS $d"
911            INCLUDEDIRS="$INCLUDEDIRS $d"
912        fi
913    done
914    echo
915    
916    if test "x$MAKEFILE" = x ; then
917        MAKEFILE="Makefile"
918    fi
919    if test "x${PLATFORM}" = x ; then
920        PLATFORM=$p_PLATFORM
921    fi
922    
923  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
924      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then
925          EXEDIR=../exe          EXEDIR=../exe
# Line 433  if test ! -d ${TOOLSDIR} ; then Line 939  if test ! -d ${TOOLSDIR} ; then
939      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"
940      exit 1      exit 1
941  fi  fi
942    if test "x$S64" = x ; then
943        S64='$(TOOLSDIR)/set64bitConst.sh'
944    fi
945    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
946    
947  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
948    
# Line 441  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 951  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
951  #  they appear as regular source code  #  they appear as regular source code
952  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
953      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
954      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
955      RETVAL=$?      RETVAL=$?
956      if test "x${RETVAL}" == "x0" ; then      if test "x${RETVAL}" = x0 ; then
957          rm -f make_eesupp.errors          rm -f make_eesupp.errors
958      else      else
959          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
# Line 452  if test -r $ROOTDIR"/eesupp/src/Makefile Line 962  if test -r $ROOTDIR"/eesupp/src/Makefile
962      fi      fi
963  fi  fi
964    
965  echo $'\n'"===  Determining package settings  ==="  printf "\n===  Determining package settings  ===\n"
966  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
967      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
968      if test -r $tmp ; then      if test -r $tmp ; then
# Line 471  echo "  getting package dependency info Line 981  echo "  getting package dependency info
981  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
982  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
983  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
984      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
985      > ./.pd_tmp      > ./.pd_tmp
986  RETVAL=$?  RETVAL=$?
987  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
988      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
989      exit 1      exit 1
990  fi  fi
991  source ./.pd_tmp  . ./.pd_tmp
992  rm -f ./.pd_tmp  rm -f ./.pd_tmp
993    
994  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
995    #  file should eventually be added so that, for convenience, one can
996    #  specify groups of packages using names like "ocean" and "atmosphere".
997    echo "  checking default package list:  "
998    if test "x${PDEFAULT}" = x ; then
999        for i in "." $MODS ; do
1000            if test -r $i"/packages.conf" ; then
1001                    PDEFAULT=$i"/packages.conf"
1002                    break
1003            fi
1004        done
1005    fi
1006  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1007      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1008  fi  fi
1009  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1010      echo "default packages file disabled"      echo "    default packages file disabled"
1011  else  else
1012      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1013          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1014      else      else
1015          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1016          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1017          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1018          RETVAL=$?          RETVAL=$?
1019          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1020              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 504  else Line 1024  else
1024          for i in $def ; do          for i in $def ; do
1025              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1026          done          done
1027          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1028            expand_pkg_groups
1029            echo "    after group expansion packages are:  $PACKAGES"
1030      fi      fi
1031  fi  fi
1032    
# Line 523  for p in $PACKAGES ; do Line 1045  for p in $PACKAGES ; do
1045  done  done
1046  PACKAGES="$pack"  PACKAGES="$pack"
1047  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1048  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1049  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1050  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1051      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 544  echo "  applying package dependency rule Line 1066  echo "  applying package dependency rule
1066  ck=  ck=
1067  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
1068      i=0      i=0
1069      rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
1070        rtot=$nname
1071      while test $i -lt $rtot ; do      while test $i -lt $rtot ; do
1072    
1073          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
1074          pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
1075            tmp="pname=\"\$PNAME_$i\""
1076            eval $tmp
1077          pin="f"          pin="f"
1078          for p in $PACKAGES ; do          for p in $PACKAGES ; do
1079              if test "x$p" = "x$pname" ; then              if test "x$p" = "x$pname" ; then
# Line 557  while test "x$ck" != xtt ; do Line 1082  while test "x$ck" != xtt ; do
1082          done          done
1083    
1084          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
1085            tmp="dname=\"\$DNAME_$i\""
1086            eval $tmp
1087          plus="-"          plus="-"
1088          echo "${DNAME[$i]}" | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
1089          RETVAL=$?          RETVAL=$?
1090          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then
1091              plus="+"              plus="+"
1092          fi          fi
1093    
1094          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
1095          dname=`echo ${DNAME[$i]} | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[+-]//'`
1096          din="f"          din="f"
1097          for p in $PACKAGES ; do          for p in $PACKAGES ; do
1098              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 609  for i in $PACKAGES ; do Line 1136  for i in $PACKAGES ; do
1136      if test -d $adr ; then      if test -d $adr ; then
1137          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1138          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1139            if test "x$i" = xautodiff ; then
1140                AUTODIFF_PKG_USED=t
1141            fi
1142      else      else
1143          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1144          exit 1          exit 1
1145      fi      fi
1146  done  done
1147    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1148    
1149  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1150  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1151  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1152  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1153  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1154  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1155  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1156  all_pack=  all_pack=
1157    DISABLED_PACKAGES=
1158  for n in $names ; do  for n in $names ; do
1159      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1160          has_pack="f"          has_pack="f"
# Line 686  for n in $names ; do Line 1165  for n in $names ; do
1165              fi              fi
1166          done          done
1167          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1168              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1169              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1170          fi          fi
1171      fi      fi
1172  done  done
1173  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1174  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1175      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1176      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1177    #eh3 DEFINES="$DEFINES -D$def"
1178    
1179  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1180      case $i in      case $i in
1181          aim_v23)          aim_v23)
1182              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1183                echo "Warning: ALLOW_AIM is set to enable aim_v23."
1184              ;;              ;;
1185      esac      esac
1186  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1187    
1188  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1189    
1190  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1191  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1192  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = x ; then
1193        STANDARDDIRS="eesupp model"
1194    fi
1195  for d in $STANDARDDIRS ; do  for d in $STANDARDDIRS ; do
1196      adr="$ROOTDIR/$d/src"      adr="$ROOTDIR/$d/src"
1197      if test ! -d $adr ; then      if test ! -d $adr ; then
# Line 750  for d in $STANDARDDIRS ; do Line 1211  for d in $STANDARDDIRS ; do
1211      fi      fi
1212  done  done
1213    
1214    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1215    echo "    of \"#define \"-type statements that are no longer allowed:"
1216    CPP_OPTIONS=
1217    CPP_EEOPTIONS=
1218    spaths=". $INCLUDEDIRS"
1219    names=`ls -1 "$ROOTDIR/pkg"`
1220    for i in $spaths ; do
1221        try="$i/CPP_OPTIONS.h"
1222        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
1223            echo "    found CPP_OPTIONS=\"$try\""
1224            CPP_OPTIONS="$try"
1225            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1226            for n in $names ; do
1227                test_for_package_in_cpp_options $CPP_OPTIONS $n
1228            done
1229        fi
1230        try="$i/CPP_EEOPTIONS.h"
1231        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1232            echo "    found CPP_EEOPTIONS=\"$try\""
1233            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1234    #**** not yet enabled ****
1235    #        test_for_mpi_in_cpp_eeoptions $try
1236    #**** not yet enabled ****
1237            CPP_EEOPTIONS="$try"
1238        fi
1239    done
1240    if test "x$CPP_OPTIONS" = x ; then
1241        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1242        exit 1
1243    fi
1244    
1245  echo $'\n'"===  Creating the Makefile  ==="  #  Here, we build the list of files to be "run through" the adjoint
1246    #  compiler.
1247    if test -f ./ad_files ; then
1248        rm -f ./ad_files
1249    fi
1250    echo "  Creating the list of files for the adjoint compiler."
1251    for i in $SOURCEDIRS ; do
1252        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1253        for j in $list_files ; do
1254            cat $i/$j >> ad_files
1255        done
1256    done
1257    
1258    echo
1259    echo "===  Creating the Makefile  ==="
1260  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1261  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1262      if test -d $i ; then      if ! test -d $i ; then
1263          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1264      else  #   else
1265          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1266      fi      fi
1267  done  done
# Line 766  rm -rf .links.tmp Line 1271  rm -rf .links.tmp
1271  mkdir .links.tmp  mkdir .links.tmp
1272  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1273  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1274  echo -n 'SRCFILES = ' > srclist.inc  echo -n 'SRCFILES = '    > srclist.inc
1275  echo -n 'CSRCFILES = ' > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1276    echo -n 'F90SRCFILES = ' > f90srclist.inc
1277  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1278  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1279    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1280  for d in $alldirs ; do  for d in $alldirs ; do
1281      deplist=      deplist=
1282      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1283        sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1284      for sf in $sfiles ; do      for sf in $sfiles ; do
1285          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1286              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1287                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1288                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1289                  deplist="$deplist $sf"                          ;;
1290                      ./AD_CONFIG.h)
1291                            ;;
1292                      ./FC_NAMEMANGLE.h)
1293                            ;;
1294                      *)
1295                            touch .links.tmp/$sf
1296                            deplist="$deplist $sf"
1297                            ;;
1298                    esac
1299                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1300                  case $extn in                  case $extn in
1301                      F)                      F)
1302                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1303                          echo -n " $sf" >> srclist.inc                          echo -n " $sf" >> srclist.inc
1304                          ;;                          ;;
1305                        F90)
1306                            echo    " \\"  >> f90srclist.inc
1307                            echo -n " $sf" >> f90srclist.inc
1308                            ;;
1309                      c)                      c)
1310                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1311                          echo -n " $sf" >> csrclist.inc                          echo -n " $sf" >> csrclist.inc
# Line 792  for d in $alldirs ; do Line 1314  for d in $alldirs ; do
1314                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1315                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1316                          ;;                          ;;
1317                        flow)
1318                            echo    " \\"  >> ad_flow_files.inc
1319                            echo -n " $sf" >> ad_flow_files.inc
1320                            ;;
1321                  esac                  esac
1322              fi              fi
1323          fi          fi
1324      done      done
1325      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
1326          echo $'\n'"#  These files are linked from $d" >> srclinks.tmp          echo "" >> srclinks.tmp
1327            echo "#  These files are linked from $d" >> srclinks.tmp
1328          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
1329          echo $'\t$(LN) '$d'/$@ $@' >> srclinks.tmp          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp
1330      fi      fi
1331  done  done
1332  rm -rf .links.tmp  rm -rf .links.tmp
1333  echo "" >> srclist.inc  echo "" >> srclist.inc
1334  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1335    echo "" >> f90srclist.inc
1336  echo "" >> hlist.inc  echo "" >> hlist.inc
1337    echo "" >> ad_flow_files.inc
1338    
1339  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1340      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 819  echo "# by the command:" >> $MAKEFILE Line 1348  echo "# by the command:" >> $MAKEFILE
1348  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1349  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1350  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1351    
1352    EXE_AD=$EXECUTABLE"_ad"
1353    EXE_FTL=$EXECUTABLE"_ftl"
1354    EXE_SVD=$EXECUTABLE"_svd"
1355    
1356  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1357    #
1358    # OPTFILE="$OPTFILE"
1359  #  #
1360  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1361  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 847  EXEDIR      = ${EXEDIR} Line 1383  EXEDIR      = ${EXEDIR}
1383  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1384  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1385    
1386    #eh3  new defines for the adjoint work
1387    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1388    EXE_AD      = ${EXE_AD}
1389    EXE_FTL     = ${EXE_FTL}
1390    EXE_SVD     = ${EXE_SVD}
1391    
1392    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1393    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1394    
1395    # These files are created by Makefile
1396    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1397    
1398  EOF  EOF
1399    
1400  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 862  MAKEDEPEND = ${MAKEDEPEND} Line 1410  MAKEDEPEND = ${MAKEDEPEND}
1410  KPP = ${KPP}  KPP = ${KPP}
1411  # Fortran compiler  # Fortran compiler
1412  FC = ${FC}  FC = ${FC}
1413    # Fortran compiler
1414    F90C = ${F90C}
1415  # Link editor  # Link editor
1416  LINK = ${LINK}  LINK = ${LINK}
1417    
# Line 875  KFLAGS2 = ${KFLAGS2} Line 1425  KFLAGS2 = ${KFLAGS2}
1425  # Optim./debug for FC  # Optim./debug for FC
1426  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
1427  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
1428    # Optim./debug for FC
1429    F90FLAGS = ${F90FLAGS}
1430    F90OPTIM = ${F90OPTIM}
1431  # Flags for CC  # Flags for CC
1432  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
1433  # Files that should not be optimized  # Files that should not be optimized
# Line 882  NOOPTFILES = ${NOOPTFILES} Line 1435  NOOPTFILES = ${NOOPTFILES}
1435  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
1436  # Flags and libraries needed for linking  # Flags and libraries needed for linking
1437  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS} \$(XLIBS)
1438    # Name of the Mekfile
1439    MAKEFILE=${MAKEFILE}
1440    
1441  EOF  EOF
1442    
1443  cat srclist.inc  >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1444  cat csrclist.inc >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1445  cat hlist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1446  echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1447  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1448    echo               >> $MAKEFILE
1449    echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1450    echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1451    echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1452    
1453  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1454    rm -f ad_flow_files.inc
1455    
1456  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1457    
1458  .SUFFIXES:  .SUFFIXES:
1459  .SUFFIXES: .o .f .p .F .c  .SUFFIXES: .o .f .p .F .c .F90 .f90
1460    
1461  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1462  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1463            @echo Creating \$@ ...
1464          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1465  depend:  depend:
1466          @make links          @make links
1467          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1468            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1469    
1470  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1471    
1472  small_f: \$(F77FILES)  small_f: \$(F77FILES) \$(F90FILES)
1473    
1474  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
1475          @printf 'running ... '          @printf 'running ... '
1476          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1477    
1478  clean:  clean:
1479          -rm -rf *.o *.f *.p ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1480  Clean:  Clean:
1481          @make clean          @make clean
1482          @make cleanlinks          @make cleanlinks
1483          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
1484            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1485  CLEAN:  CLEAN:
1486          @make Clean          @make Clean
1487          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1488          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1489          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1490          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1491    
1492    #eh3 Makefile: makefile
1493  makefile:  makefile:
1494          ${0} $@          $THIS_SCRIPT $@
1495  cleanlinks:  cleanlinks:
1496          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1497    
1498    # Special targets ($SPECIAL_FILES) which are create by make
1499    ${PACKAGES_DOT_H}:
1500            @echo Creating \$@ ...
1501            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1502    AD_CONFIG.h:
1503            @echo Creating \$@ ...
1504            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1505    FC_NAMEMANGLE.h:
1506            @echo Creating \$@ ...
1507            echo "$FC_NAMEMANGLE" > \$@
1508    
1509  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1510  .F.f:  .F.f:
1511          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1512  .f.o:  .f.o:
1513          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1514    .F90.f90:
1515            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1516    .f90.o:
1517            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1518  .c.o:  .c.o:
1519          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1520    
# Line 945  cleanlinks: Line 1524  cleanlinks:
1524  .p.f:  .p.f:
1525          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1526    
1527    #=========================================
1528    #===  Automatic Differentiation Rules  ===
1529    
1530    TAMC           = ${TAMC}
1531    TAF            = ${TAF}
1532    
1533    TAF_EXTRA      = ${TAF_EXTRA}
1534    TAMC_EXTRA     = ${TAMC_EXTRA}
1535    
1536    EOF
1537    
1538    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1539    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1540    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1541    for i in $ad_vars ; do
1542        name=$i
1543        t1="t2=\$"`echo $i`
1544        eval $t1
1545        printf "%-20s = " $name >> $MAKEFILE
1546        echo $t2 >> $MAKEFILE
1547    done
1548    
1549    echo "  Add the source list for AD code generation"
1550    echo >> $MAKEFILE
1551    echo -n "AD_FILES = " >> $MAKEFILE
1552    AD_FILES=`cat ad_files`
1553    for i in $AD_FILES ; do
1554        echo    " \\" >> $MAKEFILE
1555        echo -n " $i" >> $MAKEFILE
1556    done
1557    echo >> $MAKEFILE
1558    rm -f ad_files
1559    
1560    cat >>$MAKEFILE <<EOF
1561    
1562    # ... AD ...
1563    adall: ad_taf
1564    adtaf: ad_taf_output.f
1565    adtamc: ad_tamc_output.f
1566    
1567    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1568            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1569            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1570            -rm -f ad_config.template
1571            @make \$(F77FILES)
1572            @make \$(AD_FLOW_FILES)
1573            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1574    
1575    ad_taf_output.f: ad_input_code.f
1576            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1577            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1578    
1579    adtafonly:
1580            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1581            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1582    
1583    ad_taf: ad_taf_output.o \$(OBJFILES)
1584            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1585    
1586    ad_tamc_output.f: ad_input_code.f
1587            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1588            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1589    
1590    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1591            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1592    
1593    
1594    # ... FTL ...
1595    ftlall: ftl_taf
1596    ftltaf: ftl_taf_output.f
1597    ftltamc: ftl_tamc_output.f
1598    
1599    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1600            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1601            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1602            -rm -f ftl_config.template
1603            @make \$(F77FILES)
1604            @make \$(AD_FLOW_FILES)
1605            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1606    
1607    ftl_taf_output.f: ftl_input_code.f
1608            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1609            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1610    
1611    ftltafonly:
1612            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1613            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1614    
1615    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1616            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1617    
1618    ftl_tamc_output.f: ftl_input_code.f
1619            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1620            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1621    
1622    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1623            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1624    
1625    
1626    # ... SVD ...
1627    svdtaf: ad_taf_output.f ftl_taf_output.f
1628    svdall: svd_taf
1629    
1630    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1631            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1632    
1633    
1634    #=========================================
1635    
1636  EOF  EOF
1637    
1638    if test "x$EXEHOOK" != x ; then
1639        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
1640    fi
1641    
1642  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
1643  for i in $KPPFILES ; do  for i in $KPPFILES ; do
1644      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 965  for i in $NOOPTFILES ; do Line 1657  for i in $NOOPTFILES ; do
1657          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
1658      fi      fi
1659      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.f" >> $MAKEFILE
1660      echo $'\t$(FC) $(FFLAGS) $(NOOPTFLAGS) -c $<' >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
1661  done  done
1662    
1663  echo "  Add rules for links"  echo "  Add rules for links"
# Line 973  cat srclinks.tmp >> $MAKEFILE Line 1665  cat srclinks.tmp >> $MAKEFILE
1665  rm -f srclinks.tmp  rm -f srclinks.tmp
1666    
1667  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
1668  echo $'\n\n'"# DO NOT DELETE" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
1669    
1670    printf "\n===  Done  ===\n"
1671    
1672    # Create special header files
1673    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1674    if test ! -f $PACKAGES_DOT_H ; then
1675        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1676    else
1677        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1678        RETVAL=$?
1679        if test "x$RETVAL" = x0 ; then
1680            rm -f $PACKAGES_DOT_H".tmp"
1681        else
1682            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1683            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1684        fi
1685    fi
1686    if test ! -f AD_CONFIG.h ; then
1687        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1688    fi
1689    
1690  echo $'\n'"===  Done  ==="  
1691    #  Write the "state" for future records
1692    if test "x$DUMPSTATE" != xf ; then
1693        echo -n "" > genmake_state
1694        for i in $gm_state ; do
1695            t1="t2=\$$i"
1696            eval $t1
1697            echo "$i='$t2'" >> genmake_state
1698        done
1699    fi
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