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revision 1.55 by jmc, Sat Dec 6 00:34:29 2003 UTC revision 1.166 by jmc, Mon Oct 29 20:47:42 2007 UTC
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
17      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
18      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
19      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
20        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
21        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
22        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
23        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
24  }  }
25    
26  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
27  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
28  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
29      cpp_options=$1      cpp_options=$1
30      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
31      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
32      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
33      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
34        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
35        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
36        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
37        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
38  }  }
39    
40  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 37  test_for_string_in_file() { Line 45  test_for_string_in_file() {
45      grep -i "$strng" $file > /dev/null 2>&1      grep -i "$strng" $file > /dev/null 2>&1
46      RETVAL=$?      RETVAL=$?
47      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
48          echo -n "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
49          grep -i "$strng" $file          grep -i "$strng" $file
50          return 1          exit 99
51      fi      fi
52      return 0      return 0
53  }  }
# Line 67  expand_pkg_groups() { Line 75  expand_pkg_groups() {
75          done          done
76          PACKAGES=$new_packages          PACKAGES=$new_packages
77          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
78            return $matched
79      else      else
80          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
81      fi      fi
82  }  }
83    
84    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
85    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
86    check_for_broken_Ff()  {
87        #  Do we have defaults for $FS and/or $FS90 ?
88        tfs=f
89        tfs9=f90
90        if test "x$FS" != x ; then
91            tfs="$FS"
92        fi
93        if test "x$FS90" != x ; then
94            tfs9="$FS90"
95        fi
96    
97        #  First check the ability to create a *.F/.f pair.
98        cat <<EOF >> genmake_hello.F
99          program hello
100          write(*,*) 'hi'
101          stop
102          end
103    EOF
104        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
105        RETVAL=$?
106        if test "x$RETVAL" != x0 ; then
107            if test "x$FS" = x ; then
108                FS='for'
109                FS90='fr9'
110                check_for_broken_Ff
111            else
112                cat <<EOF 2>&1
113    ERROR: Your file system cannot distinguish between *.F and *.f files
114      (fails the "cp" test) and this program cannot find a suitable
115      replacement extension.  Please try a different build environment or
116      contact the <MITgcm-support@mitgcm.org> list for help.
117    
118    EOF
119                exit -1
120            fi
121            return
122        fi
123        rm -f genmake_hello.*
124    
125        #  Check the ability of ${MAKE} and ${LN} to use the current set
126        #  of extensions.
127        cat <<EOF >> genmake_hello.F
128          program hello
129          write(*,*) 'hi'
130          stop
131          end
132    EOF
133        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
134        cat <<EOF >> $MAKEFILE
135    .SUFFIXES:
136    .SUFFIXES: .$tfs .F
137    .F.$tfs:
138            $LN \$< \$@
139    EOF
140        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
141        RETVAL=$?
142        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
143            if test "x$FS" = x ; then
144                FS='for'
145                FS90='fr9'
146                check_for_broken_Ff
147            else
148                cat <<EOF 2>&1
149    ERROR: Your file system cannot distinguish between *.F and *.f files
150      (fails the "make/ln" test) and this program cannot find a suitable
151      replacement extension.  Please try a different build environment or
152      contact the <MITgcm-support@mitgcm.org> list for help.
153    
154    EOF
155                exit -1
156                return
157            fi
158        fi
159        rm -f genmake_hello.* $MAKEFILE
160        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
161    
162        #  If we make it here, use the extensions
163        FS=$tfs
164        FS90=$tfs9
165        return
166    }
167    
168    
169    look_for_makedepend()  {
170    
171        #  The "original" makedepend is part of the Imake system that is
172        #  most often distributed with XFree86 or with an XFree86 source
173        #  package.  As a result, many machines (eg. generic Linux) do not
174        #  have a system-default "makedepend" available.  For those
175        #  systems, we have two fall-back options:
176        #
177        #    1) a makedepend implementation shipped with the cyrus-imapd
178        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
179        #
180        #    2) a known-buggy xmakedpend shell script
181        #
182        #  So the choices are, in order:
183        #
184        #    1) use the user-specified program
185        #    2) use a system-wide default
186        #    3) locally build and use the cyrus implementation
187        #    4) fall back to the buggy local xmakedpend script
188        #
189        if test "x${MAKEDEPEND}" = x ; then
190            which makedepend > /dev/null 2>&1
191            RV0=$?
192            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
193            #  echo 'MAKEFILE="'$MAKEFILE'"'
194            cat <<EOF >> $MAKEFILE
195    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
196    #
197    #   Some "makedepend" implementations will die if they cannot
198    #   find a Makefile -- so this file is here to gives them an
199    #   empty one to find and parse.
200    EOF
201            cat <<EOF >> genmake_tc.f
202          program test
203          write(*,*) 'test'
204          stop
205          end
206    EOF
207            makedepend genmake_tc.f > /dev/null 2>&1
208            RV1=$?
209            test -f $MAKEFILE  &&  rm -f $MAKEFILE
210            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
211            if test "x${RV0}${RV1}" = x00 ; then
212                MAKEDEPEND=makedepend
213            else
214                echo "    a system-default makedepend was not found."
215                
216                #  Try to build the cyrus implementation
217                build_cyrus_makedepend
218                RETVAL=$?
219                if test "x$RETVAL" != x0 ; then
220                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
221                fi
222                rm -f ./genmake_cy_md
223            fi
224        else
225            #  echo "MAKEDEPEND=${MAKEDEPEND}"
226            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
227            RETVAL=$?
228            if test x"$RETVAL" = x0 ; then
229                build_cyrus_makedepend
230            fi
231        fi
232    }
233    
234    
235    build_cyrus_makedepend()  {
236        rm -f ./genmake_cy_md
237        (
238            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
239                &&  ./configure > /dev/null 2>&1  \
240                &&  make > /dev/null 2>&1
241            if test -x ./makedepend.exe ; then
242                $LN ./makedepend.exe ./makedepend
243            fi
244            ./makedepend ifparser.c > /dev/null 2>&1  \
245                &&  echo "true"
246        ) > ./genmake_cy_md
247        grep true ./genmake_cy_md > /dev/null 2>&1
248        RETVAL=$?
249        rm -f ./genmake_cy_md
250        if test "x$RETVAL" = x0 ; then
251            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
252            return 0
253        else
254            echo "WARNING: unable to build cyrus-imapd-makedepend"
255            return 1
256        fi
257    }
258    
259    
260    build_embed_encode()
261    {
262        printf "  building the embed-encode utility...  "
263        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
264            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
265                echo
266                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
267                echo
268                EMBED_SRC=f
269                return 1
270            fi
271            clist="cc gcc c89 $CC"
272            for ic in $clist ; do
273                comm="$ic -o encode_files encode_files.c"
274                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
275                RETVAL=$?
276                if test "x$RETVAL" = x0 ; then
277                    echo "OK"
278                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
279                    return 0
280                fi
281            done
282            echo
283            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
284            echo "      so it has been disabled"
285            echo
286            EMBED_SRC=f
287            return 1
288        fi
289        echo "OK"
290        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
291    }
292    
293    
294  # Guess possible config options for this host  # Guess possible config options for this host
295  find_possible_configs()  {  find_possible_configs()  {
296    
297      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
298      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
299      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
300      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
301        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
302        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
303        PLATFORM=$tmp3
304        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
305      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
306      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
307            
# Line 98  find_possible_configs()  { Line 321  find_possible_configs()  {
321          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
322      fi      fi
323    
324      # makedepend is not always available      look_for_makedepend
325      if test "x${MAKEDEPEND}" = x ; then  
326        which makedepend >& /dev/null      #================================================================
327        RETVAL=$?      #  look for possible C compilers
328        if test "x${RETVAL}" = x1 ; then      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
329           echo "    makedepend was not found. Using xmakedpend instead."      p_CC=
330           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'      for c in $tmp ; do
331        fi          rm -f ./genmake_hello.c  ./genmake_hello
332            cat >> genmake_hello.c << EOF
333    #include <stdio.h>
334    int main(int argc, char **argv) {
335      printf("Hello!\n");
336      return 0;
337    }
338    EOF
339            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
340            RETVAL=$?
341            if test "x${RETVAL}" = x0 ; then
342                p_CC="$p_CC $c"
343            fi
344        done
345        rm -f ./genmake_hello.c ./genmake_hello
346        if test "x${p_CC}" = x ; then
347            cat 1>&2 <<EOF
348    
349    Error: No C compilers were found in your path.  Please specify one using:
350    
351        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
352        2) the CC or MITGCM_CC environment variables.
353    
354    EOF
355            exit 1
356        else
357            echo "  The possible C compilers found in your path are:"
358            echo "   "$p_CC
359            if test "x$CC" = x ; then
360                CC=`echo $p_CC | $AWK '{print $1}'`
361                echo "  Setting C compiler to: "$CC
362            fi
363      fi      fi
364    
365      # look for possible fortran compilers      #================================================================
366      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      #  look for possible FORTRAN compilers
367        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"
368      p_FC=      p_FC=
369      for c in $tmp ; do      for c in $tmp ; do
370          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 134  Error: No Fortran compilers were found i Line 389  Error: No Fortran compilers were found i
389    
390      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
391      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
392      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
393    
394  EOF  EOF
395          exit 1          exit 1
396      else      else
397          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
398          echo "   "$p_FC          echo "   "$p_FC
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
399      fi      fi
400    
401      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
402          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
403          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
404              OPTFILE=$p_OF          for i in $p_FC ; do
405              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
406              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
407              break                  echo "  Setting OPTFILE to: "$OPTFILE
408          fi                  break
409      done              fi
410            done
411        fi
412    
413        if test "x$OPTFILE" = x ; then
414            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
415            if test ! -r $OPTFILE ; then
416                 echo "  I looked for the file "$OPTFILE" but did not find it"
417            fi
418        fi
419    #    echo "  The options file:  $p_OF"
420    #    echo "    appears to match so we'll use it."
421    #   for i in $p_FC ; do
422    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
423    #if test -r $p_OF ; then
424    #    OPTFILE=$p_OF
425    #    echo "  The options file:  $p_OF"
426    #    echo "    appears to match so we'll use it."
427    #    break
428    #fi
429    #   done
430      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
431          cat 1>&2 <<EOF          cat 1>&2 <<EOF
432    
# Line 213  get_pdepend_list()  { Line 485  get_pdepend_list()  {
485      . ./.pd_tmp      . ./.pd_tmp
486      rm -f ./.pd_tmp      rm -f ./.pd_tmp
487    
488      echo -n "PNAME = "${}      printf "PNAME = "${}
489  }  }
490    
491    
# Line 227  Usage: "$0" [OPTIONS] Line 499  Usage: "$0" [OPTIONS]
499      -help | --help | -h | --h      -help | --help | -h | --h
500            Print this help message and exit.            Print this help message and exit.
501    
502        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
503          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
504              Use "NAME" as the adoptfile.  By default, the file at
505              "tools/adjoint_options/adjoint_default" will be used.
506    
507      -nooptfile | --nooptfile      -nooptfile | --nooptfile
508        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
509        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
# Line 251  Usage: "$0" [OPTIONS] Line 528  Usage: "$0" [OPTIONS]
528        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
529            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
530    
531        -makedepend NAME | -md NAME
532          --makedepend=NAME | -md=NAME
533              Use "NAME" for the MAKEDEPEND program.
534    
535      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
536        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
537            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
# Line 287  Usage: "$0" [OPTIONS] Line 568  Usage: "$0" [OPTIONS]
568            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
569            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
570    
571        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
572              Use "NAME" as the C compiler.  By default, genmake
573              will search for a working compiler by trying a list of
574              "usual suspects" such as gcc, c89, cc, etc.
575    
576      -[no]ieee | --[no]ieee      -[no]ieee | --[no]ieee
577            Do or don't use IEEE numerics.  Note that this option            Do or don't use IEEE numerics.  Note that this option
578            *only* works if it is supported by the OPTFILE that            *only* works if it is supported by the OPTFILE that
579            is being used.            is being used.
580    
581        -ignoretime | -ignore_time | --ignoretime | --ignore_time
582              Ignore all the "wall clock" routines entirely.  This will
583              not in any way hurt the model results -- it simply means
584              that the code that checks how long the model spends in
585              various routines will give junk values.
586    
587        -ts | --ts
588              Produce timing information per timestep
589        -papis | --papis
590              Produce summary MFlop/s (and IPC) with PAPI per timestep
591        -pcls | --pcls
592              Produce summary MFlop/s etc. with PCL per timestep
593        -foolad | --foolad
594              Fool the AD code generator
595        -papi | --papi
596              Performance analysis with PAPI
597        -pcl | --pcl
598              Performance analysis with PCL
599        -hpmt | --hpmt
600              Performance analysis with the HPM Toolkit
601    
602        -gsl | --gsl
603              Use GSL to control floating point rounding and precision
604        -devel | --devel
605              Add additional warning and debugging flags for development
606    
607        -mpi | --mpi
608              Include MPI header files and link to MPI libraries
609        -mpi=PATH | --mpi=PATH
610              Include MPI header files and link to MPI libraries using MPI_ROOT
611              set to PATH. i.e. Include files from \$PATH/include, link to libraries
612              from \$PATH/lib and use binaries from \$PATH/bin.
613    
614        -es | --es | -embed-source | --embed-source
615              Embed a tarball containing the full source code
616              (including the Makefile, etc.) used to build the
617              executable [off by default]
618    
619        -bash NAME
620              Explicitly specify the Bourne or BASH shell to use
621    
622    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
623    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
624    
# Line 312  EOF Line 639  EOF
639    
640  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
641  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
642    
643        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
644        if test ! "x$FC_NAMEMANGLE" = x ; then
645            return 0
646        fi
647    
648      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
649            
650      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
# Line 329  WARNING: Please contact <MITgcm-support@ Line 662  WARNING: Please contact <MITgcm-support@
662  EOF  EOF
663          return 1          return 1
664      fi      fi
665      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
666      RETVAL=$?      RETVAL=$?
667      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
668          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 341  WARNING: Please contact <MITgcm-support@ Line 674  WARNING: Please contact <MITgcm-support@
674  EOF  EOF
675          return 1          return 1
676      fi      fi
677      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
678        subroutine tcall( string )        subroutine tcall( string )
679        character*(*) string        character*(*) string
680        call tsub( string )        call tsub( string )
681        end        end
682  EOF  EOF
683      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1
684      RETVAL=$?      RETVAL=$?
685      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
686          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 359  WARNING: Please contact <MITgcm-support@ Line 692  WARNING: Please contact <MITgcm-support@
692  EOF  EOF
693          return 1          return 1
694      fi      fi
695      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
696      RETVAL=$?      RETVAL=$?
697      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
698          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 413  void FC_NAMEMANGLE(cloc) ( double *curti Line 746  void FC_NAMEMANGLE(cloc) ( double *curti
746   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
747  }  }
748  EOF  EOF
749      make genmake_tc_1.o >> genmake_tc.log 2>&1      make genmake_tc_1.o >> genmake_warnings 2>&1
750      RET_C=$?      RET_C=$?
751      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
752        program hello        program hello
753        Real*8 wtime        REAL*8 wtime
754        external cloc        external cloc
755        call cloc(wtime)        call cloc(wtime)
756        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
757        end program hello        end
758  EOF  EOF
759      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
760        echo $COMM >> genmake_warnings
761        $COMM >> genmake_warnings 2>&1
762      RET_F=$?      RET_F=$?
763      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
764      RETVAL=$?      RETVAL=$?
765      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
766          HAVE_CLOC=t          HAVE_CLOC=t
# Line 435  EOF Line 770  EOF
770  }  }
771    
772    
773    check_HAVE_SIGREG()  {
774        if test ! "x$HAVE_SIGREG" = x ; then
775            return
776        fi
777        get_fortran_c_namemangling
778        cat <<EOF > genmake_tc_1.c
779    $FC_NAMEMANGLE
780    #include <stdlib.h>
781    #include <stdio.h>
782    #include <signal.h>
783    #include <errno.h>
784    #include <ucontext.h>
785    
786    int * ip;
787    
788    static void killhandler(
789        unsigned int sn, siginfo_t  si, struct ucontext *sc )
790    {
791        *ip = *ip + 1;
792        return;
793    }
794    
795    void FC_NAMEMANGLE(sigreg) (int * aip)
796    {
797        struct sigaction s;
798        ip = aip;
799        s.sa_flags = SA_SIGINFO;
800        s.sa_sigaction = (void *)killhandler;
801        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
802            printf("Sigaction returned error = %d\n", errno);
803            exit(0);
804        }
805        return;
806    }
807    EOF
808        make genmake_tc_1.o >> genmake_warnings 2>&1
809        RET_C=$?
810        cat <<EOF > genmake_tc_2.$FS
811          program hello
812          integer anint
813          common /iv/ anint
814          external sigreg
815          call sigreg(anint)
816          end
817    EOF
818        echo >> genmake_warnings
819        echo "running: check_HAVE_SIGREG()" >> genmake_warnings
820        cat genmake_tc_2.$FS >> genmake_warnings
821        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
822        echo $COMM >> genmake_warnings
823        $COMM >> genmake_warnings 2>&1
824        RETVAL=$?
825        if test "x$RETVAL" = x0 ; then
826            HAVE_SIGREG=t
827            DEFINES="$DEFINES -DHAVE_SIGREG"
828        fi
829        rm -f genmake_tc*
830    }
831    
832    
833    check_HAVE_SETRLSTK()  {
834        if test "x$HAVE_SETRLSTK" = xt ; then
835            DEFINES="$DEFINES -DHAVE_SETRLSTK"
836            return
837        fi  
838        if test ! "x$HAVE_SETRLSTK" = x ; then
839            return
840        fi
841        get_fortran_c_namemangling
842        cat <<EOF > genmake_tc_1.c
843    $FC_NAMEMANGLE
844    #include <sys/time.h>
845    #include <sys/resource.h>
846    #include <unistd.h>
847    void FC_NAMEMANGLE(setrlstk) ()
848    {
849        struct rlimit rls;
850        rls.rlim_cur = RLIM_INFINITY;
851        rls.rlim_max = RLIM_INFINITY;
852        setrlimit(RLIMIT_STACK, &rls);
853        return;
854    }
855    EOF
856        make genmake_tc_1.o >> genmake_warnings 2>&1
857        RET_C=$?
858        cat <<EOF > genmake_tc_2.$FS
859          program hello
860          external setrlstk
861          call setrlstk()
862          end
863    EOF
864        echo >> genmake_warnings
865        echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings
866        cat genmake_tc_2.$FS >> genmake_warnings
867        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
868        echo $COMM >> genmake_warnings
869        $COMM >> genmake_warnings 2>&1
870        RETVAL=$?
871        if test "x$RETVAL" = x0 ; then
872            HAVE_SETRLSTK=t
873            DEFINES="$DEFINES -DHAVE_SETRLSTK"
874        fi
875        rm -f genmake_tc*
876    }
877    
878    
879    check_HAVE_STAT()  {
880        get_fortran_c_namemangling
881        cat <<EOF > genmake_tc_1.c
882    $FC_NAMEMANGLE
883    #include <stdio.h>
884    #include <stdlib.h>
885    #include <unistd.h>
886    #include <sys/stat.h>
887    #include <sys/types.h>
888    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
889    {
890        char name[512];
891        struct stat astat;
892    
893        name[0] = 'a'; name[1] = '\0';
894        if (! stat(name, &astat))
895            *nbyte = (int)(astat.st_size);
896        else
897            *nbyte = -1;
898    }
899    EOF
900        make genmake_tc_1.o >> genmake_tc.log 2>&1
901        RET_C=$?
902        cat <<EOF > genmake_tc_2.$FS
903          program hello
904          integer nbyte
905          call tfsize(nbyte)
906          print *," HELLO WORLD", nbyte
907          end
908    EOF
909        echo >> genmake_warnings
910        echo "running: check_HAVE_STAT()" >> genmake_warnings
911        cat genmake_tc_2.$FS >> genmake_warnings
912        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
913        echo $COMM >> genmake_warnings
914        $COMM >> genmake_tc.log 2>&1
915        RETVAL=$?
916        if test "x$RETVAL" = x0 ; then
917            HAVE_STAT=t
918            DEFINES="$DEFINES -DHAVE_STAT"
919        fi
920        rm -f genmake_tc*
921    }
922    
923    
924    check_netcdf_libs()  {
925        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
926            return
927        fi
928        echo >> genmake_warnings
929        echo "running: check_netcdf_libs()" >> genmake_warnings
930        cat <<EOF > genmake_tnc.F
931          program fgennc
932    #include "netcdf.inc"
933    EOF
934        if test ! "x$MPI" = x ; then
935            echo '#include "mpif.h"' >> genmake_tnc.F
936        fi
937        cat <<EOF >> genmake_tnc.F
938          integer iret, ncid, xid
939          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
940          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
941          iret = nf_def_dim(ncid, 'X', 11, xid)
942          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
943          iret = nf_close(ncid)
944          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
945          end
946    EOF
947        echo "===  genmake_tnc.F  ===" > genmake_tnc.log
948        cat genmake_tnc.F >> genmake_tnc.log
949        echo "===  genmake_tnc.F  ===" >> genmake_tnc.log
950        RET_CPP=f
951        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
952        echo "$COMM" >> genmake_tnc.log
953        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
954        if test "x$RET_CPP" = xf ; then
955            echo "  WARNING: CPP failed to pre-process the netcdf test." \
956                >> genmake_tnc.log
957            echo "    Please check that \$INCLUDES is properly set." \
958                >> genmake_tnc.log
959        fi
960        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
961        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
962        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
963            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
964        RET_COMPILE=$?
965        cat genmake_tnc.log >> genmake_warnings
966    
967        #EH3  Remove test program execution for machines that either disallow
968        #EH3  execution or cannot support it (eg. cross-compilers)
969        #EH3
970        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
971        #EH3 RETVAL=$?
972        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
973    
974        if test "x$RET_COMPILE" = x0 ; then
975            HAVE_NETCDF=t
976        else
977            # try again with "-lnetcdf" added to the libs
978            echo "try again with added '-lnetcdf'" > genmake_tnc.log
979            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
980            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
981            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
982            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
983                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
984                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
985            RET_COMPILE=$?
986            cat genmake_tnc.log >> genmake_warnings
987            if test "x$RET_COMPILE" = x0 ; then
988                LIBS="$LIBS -lnetcdf"
989                HAVE_NETCDF=t
990            else
991            # try again with "-lnetcdff" added to the libs
992                echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
993                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
994                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
995                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
996                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
997                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
998                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
999                RET_COMPILE=$?
1000                cat genmake_tnc.log >> genmake_warnings
1001                if test "x$RET_COMPILE" = x0 ; then
1002                    LIBS="$LIBS -lnetcdff -lnetcdf"
1003                    HAVE_NETCDF=t
1004                fi
1005            fi
1006        fi
1007        rm -f genmake_tnc*
1008    }
1009    
1010    
1011    
1012    ###############################################################################
1013    #   Sequential part of script starts here
1014    ###############################################################################
1015    
1016  #  Set defaults here  #  Set defaults here
1017  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1018    
# Line 442  PLATFORM= Line 1020  PLATFORM=
1020  LN=  LN=
1021  S64=  S64=
1022  KPP=  KPP=
1023  FC=  #FC=
1024    #CC=gcc
1025    #CPP=
1026  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1027  DEFINES=  DEFINES=
1028  PACKAGES=  PACKAGES=
1029  ENABLE=  ENABLE=
1030  DISABLE=  DISABLE=
1031  MAKEFILE=  # MAKEFILE=
1032  MAKEDEPEND=  # MAKEDEPEND=
1033  PDEPEND=  PDEPEND=
1034  DUMPSTATE=t  DUMPSTATE=t
1035  PDEFAULT=  PDEFAULT=
1036  OPTFILE=  OPTFILE=
1037  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1038  FFLAGS=  FFLAGS=
1039  FOPTIM=  FOPTIM=
1040    FEXTRAFLAGS=
1041  CFLAGS=  CFLAGS=
1042  KFLAGS1=  KFLAGS1=
1043  KFLAGS2=  KFLAGS2=
1044    #LDADD=
1045  LIBS=  LIBS=
1046  KPPFILES=  KPPFILES=
1047  NOOPTFILES=  NOOPTFILES=
1048  NOOPTFLAGS=  NOOPTFLAGS=
1049    MPI=
1050    MPIPATH=
1051    TS=
1052    PAPIS=
1053    PCLS=
1054    FOOLAD=
1055    PAPI=
1056    PCL=
1057    HPMT=
1058    GSL=
1059    DEVEL=
1060    HAVE_TEST_L=
1061    
1062  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1063  HAVE_SYSTEM=  HAVE_SYSTEM=
1064  HAVE_FDATE=  HAVE_FDATE=
1065  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1066  HAVE_CLOC=  HAVE_CLOC=
1067    # HAVE_SETRLSTK=
1068    HAVE_STAT=
1069    HAVE_NETCDF=
1070    HAVE_ETIME=
1071    IGNORE_TIME=
1072    
1073  MODS=  MODS=
1074  TOOLSDIR=  TOOLSDIR=
1075  SOURCEDIRS=  SOURCEDIRS=
1076  INCLUDEDIRS=  INCLUDEDIRS=
1077  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1078    
1079    G2ARGS=
1080    BASH=
1081  PWD=`pwd`  PWD=`pwd`
1082  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1083  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1084  THISHOSTNAME=`hostname`  EMBED_SRC=
1085    THISHOST=`hostname`
1086  THISCWD=`pwd`  THISCWD=`pwd`
1087  THISDATE=`date`  THISDATE=`date`
1088    THISUSER=`echo $USER`
1089    THISVER=
1090  MACHINE=`uname -a`  MACHINE=`uname -a`
1091  EXECUTABLE=  EXECUTABLE=
1092  EXEHOOK=  EXEHOOK=
# Line 493  IEEE= Line 1096  IEEE=
1096  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1097      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1098  fi  fi
1099    FS=
1100    FS90=
1101    
1102  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1103  AD_OPTFILE=  AD_OPTFILE=
# Line 510  TAMC_EXTRA= Line 1115  TAMC_EXTRA=
1115    
1116  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1117  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
1118  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"
1119    
1120  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1121  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"
1122  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
1123  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
1124  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
1125  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
1126    
1127  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1128  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 546  for i in . $MODS ; do Line 1151  for i in . $MODS ; do
1151          break          break
1152      fi      fi
1153  done  done
1154  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1155  if test -e $gm_local ; then  if test -f $gm_local ; then
1156      echo "using $gm_local"      echo "using $gm_local"
1157      . $gm_local      . $gm_local
1158      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 556  else Line 1161  else
1161      echo "none found"      echo "none found"
1162  fi  fi
1163    
1164  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1165  #OPTIONS=  #OPTIONS=
1166  #n=0  #n=0
1167  #for i ; do  #for i ; do
# Line 568  fi Line 1173  fi
1173  #done  #done
1174  #parse_options  #parse_options
1175  ac_prev=  ac_prev=
1176  for ac_option ; do  for ac_option in "$@" ; do
1177    
1178        G2ARGS="$G2ARGS \"$ac_option\""
1179    
1180      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1181      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 611  for ac_option ; do Line 1218  for ac_option ; do
1218          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1219              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1220                    
1221            -bash | --bash)
1222                ac_prev=BASH ;;
1223            -bash=* | --bash=*)
1224                BASH=$ac_optarg ;;
1225            
1226            -makedepend | --makedepend | -md | --md)
1227                ac_prev=MAKEDEPEND ;;
1228            -makedepend=* | --makedepend=* | -md=* | --md=*)
1229                MAKEDEPEND=$ac_optarg ;;
1230            
1231          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1232              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1233          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
# Line 652  for ac_option ; do Line 1269  for ac_option ; do
1269  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1270  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1271  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1272                        
1273            -cc | --cc)
1274                ac_prev=CC ;;
1275            -cc=* | --cc=*)
1276                CC=$ac_optarg ;;
1277            
1278          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1279              ac_prev=FC ;;              ac_prev=FC ;;
1280          -fc=* | --fc=*)          -fc=* | --fc=*)
1281              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1282                    
1283            -fs | --fs)
1284                ac_prev=FS ;;
1285            -fs=* | --fs=*)
1286                FS=$ac_optarg ;;
1287            
1288            -fs90 | --fs90)
1289                ac_prev=FS90 ;;
1290            -fs90=* | --fs90=*)
1291                FS90=$ac_optarg ;;
1292            
1293          -ieee | --ieee)          -ieee | --ieee)
1294              IEEE=true ;;              IEEE=true ;;
1295          -noieee | --noieee)          -noieee | --noieee)
1296              IEEE= ;;              IEEE= ;;
1297    
1298            -ts | --ts)
1299                TS=true ;;
1300            -papis | --papis)
1301                PAPIS=true ;;
1302            -pcls | --pcls)
1303                PCLS=true ;;
1304            -foolad | --foolad)
1305                FOOLAD=true ;;
1306            -papi | --papi)
1307                PAPI=true ;;
1308            -pcl | --pcl)
1309                PCL=true ;;
1310            -hpmt | --hpmt)
1311                HPMT=true ;;
1312    
1313            -gsl | --gsl)
1314                GSL=true ;;
1315    
1316            -devel | --devel)
1317                DEVEL=true ;;
1318    
1319            -mpi | --mpi)
1320                MPI=true ;;
1321            -mpi=* | --mpi=*)
1322                MPIPATH=$ac_optarg
1323                MPI=true ;;
1324                    
1325  #       -jam | --jam)  #       -jam | --jam)
1326  #           JAM=1 ;;  #           JAM=1 ;;
# Line 680  for ac_option ; do Line 1339  for ac_option ; do
1339              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1340          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1341              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1342            
1343            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1344                IGNORE_TIME="-DIGNORE_TIME" ;;
1345    
1346            -es | --es | -embed-source | --embed-source)
1347                EMBED_SRC=t ;;
1348    
1349          -*)          -*)
1350              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 695  for ac_option ; do Line 1360  for ac_option ; do
1360            
1361  done  done
1362    
1363    
1364  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1365      echo      echo
1366      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1367      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1368      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1369      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/devel_HOWTO/"
1370      echo      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1371      echo "  for directions on how to setup and use the new \"genmake2\" input"      echo "WARNING: ignore \"./.genmakerc\" and continue."
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
1372      echo      echo
1373  fi  fi
1374    
1375    #  Find the MITgcm ${ROOTDIR}
1376  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1377      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1378        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1379          ROOTDIR=".."          ROOTDIR=".."
1380      else      else
1381          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1382              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1383                  ROOTDIR=$d                  ROOTDIR=$d
1384                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1385                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1386                  break                  break
1387              fi              fi
# Line 732  if test ! -d ${ROOTDIR} ; then Line 1399  if test ! -d ${ROOTDIR} ; then
1399      exit 1      exit 1
1400  fi  fi
1401    
1402    #  Find the MITgcm ${THISVER}
1403    if test -f "${ROOTDIR}/doc/tag-index" ; then
1404        THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`
1405    fi
1406    
1407    if test "x$MAKEFILE" = x ; then
1408        MAKEFILE="Makefile"
1409    fi
1410    
1411  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1412  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1413      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 748  if test "x$OPTFILE" != xNONE ; then Line 1424  if test "x$OPTFILE" != xNONE ; then
1424          . "$OPTFILE"          . "$OPTFILE"
1425          RETVAL=$?          RETVAL=$?
1426          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1427              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1428              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1429              exit 1              exit 1
1430          fi          fi
# Line 775  if test "x${AD_OPTFILE}" != xNONE ; then Line 1451  if test "x${AD_OPTFILE}" != xNONE ; then
1451          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1452          RETVAL=$?          RETVAL=$?
1453          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1454              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1455              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1456              exit 1              exit 1
1457          fi          fi
# Line 788  if test "x${AD_OPTFILE}" != xNONE ; then Line 1464  if test "x${AD_OPTFILE}" != xNONE ; then
1464      fi      fi
1465  fi  fi
1466    
1467  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1468    #  Set default values if not set by the optfile
1469    #
1470    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1471  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1472    if test ! "x$BASH" = x ; then
1473        # add a trailing space so that it works within the Makefile syntax (see below)
1474        BASH="$BASH "
1475    fi
1476  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1477      cat <<EOF 1>&2      cat <<EOF 1>&2
1478    
# Line 800  Error: no Fortran compiler: please speci Line 1483  Error: no Fortran compiler: please speci
1483  EOF  EOF
1484      exit 1      exit 1
1485  fi  fi
1486    if test "x$CC" = x ; then
1487        CC=cc
1488    #     cat <<EOF 1>&2
1489    # Error: no C compiler: please specify using one of the following:
1490    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1491    #   2) the "-cc=XXX" command-line option
1492    #   3) the "./genmake_local" file
1493    # EOF
1494    #     exit 1
1495    fi
1496  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1497      LINK=$FC      LINK=$FC
1498  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1499  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1500      MAKE="make"      MAKE="make"
1501  fi  fi
1502    if test "x$CPP" = x ; then
1503        CPP=cpp
1504    fi
1505    #EH3 === UGLY ===
1506    #  The following is an ugly little hack to check for $CPP in /lib/ and
1507    #  it should eventually be replaced with a more general function that
1508    #  searches a combo of the user's path and a list of "usual suspects"
1509    #  to find the correct location for binaries such as $CPP.
1510    for i in " " "/lib/" ; do
1511        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1512    done
1513    #EH3 === UGLY ===
1514  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1515  RETVAL=$?  RETVAL=$?
1516  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 825  EOF Line 1527  EOF
1527  else  else
1528      rm -f test_cpp      rm -f test_cpp
1529  fi  fi
1530  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
     MAKEDEPEND=makedepend  
 fi  
1531  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1532      LN="ln -s"      LN="ln -s"
1533  fi  fi
# Line 843  Error: The command "ln -s" failed -- ple Line 1543  Error: The command "ln -s" failed -- ple
1543  EOF  EOF
1544      exit 1      exit 1
1545  fi  fi
1546    test -L genmake_tlink > /dev/null 2>&1
1547    RETVAL=$?
1548    if test "x$RETVAL" = x0 ; then
1549        HAVE_TEST_L=t
1550    fi
1551  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1552    
1553    #  Check for broken *.F/*.f handling and fix if possible
1554    check_for_broken_Ff
1555    
1556    if test ! "x$MPI" = x ; then
1557          echo "  Turning on MPI cpp macros"
1558          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1559    fi
1560    
1561    if test ! "x$TS" = x ; then
1562          echo "  Turning on timing per timestep"
1563          if test ! "x$FOOLAD" = x ; then
1564                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1565          else
1566                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1567          fi
1568          PACKAGES="$PACKAGES showflops"
1569    fi
1570    if test ! "x$PAPIS" = x ; then
1571          echo "  Turning on PAPI flop summary per timestep"
1572          echo "  Please make sure PAPIINC, PAPILIB are defined"
1573          if test ! "x$FOOLAD" = x ; then
1574                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1575          else
1576                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1577          fi
1578          INCLUDES="$INCLUDES $PAPIINC"
1579          LIBS="$LIBS $PAPILIB"
1580          PACKAGES="$PACKAGES showflops"
1581    fi
1582    if test ! "x$PCLS" = x ; then
1583          echo "  Turning on PCL counter summary per timestep"
1584          echo "  Please make sure PCLINC, PCLLIB are defined"
1585          if test ! "x$FOOLAD" = x ; then
1586                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1587          else
1588                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1589          fi
1590          INCLUDES="$INCLUDES $PCLINC"
1591          LIBS="$LIBS $PCLLIB"
1592          PACKAGES="$PACKAGES showflops"
1593    fi
1594    if test ! "x$PAPI" = x ; then
1595          if test ! "x$PAPIS" = x ; then
1596              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1597              echo "  Sticking with PAPI flop summary per timestep!"
1598          else
1599              echo "  Turning on performance analysis with PAPI"
1600              echo "  Please make sure PAPIINC, PAPILIB are defined"
1601              DEFINES="$DEFINES -DUSE_PAPI"
1602              INCLUDES="$INCLUDES $PAPIINC"
1603              LIBS="$LIBS $PAPILIB"
1604          fi
1605    fi
1606    if test ! "x$PCL" = x ; then
1607          if test ! "x$PCLS" = x ; then
1608              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1609              echo "  Sticking with PCL flop summary per timestep!"
1610          else
1611              echo "  Turning on performance analysis with PCL"
1612              echo "  Please make sure PCLINC, PCLLIB are defined"
1613              DEFINES="$DEFINES -DUSE_PCL"
1614              INCLUDES="$INCLUDES $PCLINC"
1615              LIBS="$LIBS $PCLLIB"
1616          fi
1617    fi
1618    if test ! "x$HPMT" = x ; then
1619          if test ! "x$PAPI" = x ; then
1620              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1621              echo "  Sticking with PAPI!"
1622          else if test ! "x$PCL" = x ; then
1623              echo "  PCL and the HPM Toolkit cannot co-exist!"
1624              echo "  Sticking with PCL!"
1625          else
1626              echo "  Turning on performance analysis with the HPM Toolkit"
1627              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1628              DEFINES="$DEFINES -DUSE_LIBHPM"
1629              INCLUDES="$INCLUDES $HPMTINC"
1630              LIBS="$LIBS $HPMTLIB"
1631          fi
1632          fi
1633    fi
1634    if test ! "x$GSL" = x ; then
1635          echo "  Turning on use of GSL to control floating point calculations"
1636          echo "  Please make sure GSLINC, GSLLIB are defined"
1637          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1638          INCLUDES="$INCLUDES $GSLINC"
1639          LIBS="$LIBS $GSLLIB"
1640    fi
1641    
1642  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1643  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1644  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1645        program hello        program hello
1646        call system('echo hi')        call system('echo hi')
1647        end        end
1648  EOF  EOF
1649  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1650  RETVAL=$?  RETVAL=$?
1651  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1652      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 865  else Line 1658  else
1658  fi  fi
1659  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1660    
1661  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1662  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1663        program hello        program hello
1664        CHARACTER(128) string        CHARACTER*(128) string
1665        string = ' '        string = ' '
1666        call fdate( string )        call fdate( string )
1667        print *, string        print *, string
1668        end        end
1669  EOF  EOF
1670  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1671  RETVAL=$?  RETVAL=$?
1672  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1673      HAVE_FDATE=t      HAVE_FDATE=t
# Line 886  else Line 1679  else
1679  fi  fi
1680  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1681    
1682  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC...  "
1683    cat > genmake_tcomp.$FS <<EOF
1684          program hello
1685          REAL*4 ACTUAL, TARRAY(2)
1686          EXTERNAL ETIME
1687          REAL*4 ETIME
1688          actual = etime( tarray )
1689          print *, tarray
1690          end
1691    EOF
1692    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1693    RETVAL=$?
1694    if test "x$RETVAL" = x0 ; then
1695        HAVE_ETIME=t
1696        DEFINES="$DEFINES -DHAVE_ETIME"
1697        echo "yes"
1698    else
1699        HAVE_ETIME=
1700        echo "no"
1701    fi
1702    rm -f genmake_tcomp*
1703    
1704    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1705  check_HAVE_CLOC  check_HAVE_CLOC
1706  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1707      echo "yes"      echo "yes"
1708  else  else
1709      echo "no"      echo "no"
1710        if test "x$EMBED_SRC" = xt ; then
1711            echo "    WARNING: you requested file embedding but it has"
1712            echo "      been disabled since C code cannot be called"
1713            EMBED_SRC=
1714        fi
1715    fi
1716    rm -f genmake_t*
1717    
1718    printf "  Can we unlimit the stack size using $FC...  "
1719    check_HAVE_SETRLSTK
1720    if test "x$HAVE_SETRLSTK" = xt ; then
1721        echo "yes"
1722    else
1723        echo "no"
1724  fi  fi
1725  rm -f genmake_t*  rm -f genmake_t*
1726    
1727    printf "  Can we register a signal handler using $FC...  "
1728    check_HAVE_SIGREG
1729    if test "x$HAVE_SIGREG" = xt ; then
1730        echo "yes"
1731    else
1732        echo "no"
1733    fi
1734    rm -f genmake_t*
1735    
1736    printf "  Can we use stat() through C calls...  "
1737    check_HAVE_STAT
1738    if test "x$HAVE_STAT" != x ; then
1739        echo "yes"
1740    else
1741        echo "no"
1742    fi
1743    rm -f genmake_t*
1744    
1745    printf "  Can we create NetCDF-enabled binaries...  "
1746    check_netcdf_libs
1747    if test "x$HAVE_NETCDF" != x ; then
1748        echo "yes"
1749    else
1750        echo "no"
1751    fi
1752    DEFINES="$DEFINES $IGNORE_TIME"
1753    
1754    if test "x$EMBED_SRC" = xt ; then
1755        build_embed_encode
1756    fi
1757    if test "x$EMBED_SRC" = xt ; then
1758        ENABLE="$ENABLE embed_files"
1759    fi
1760    
1761    
1762  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1763  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1764  for d in $MODS ; do  for d in $MODS ; do
1765      if test ! -d $d ; then      if test ! -d $d ; then
1766          echo          echo
1767          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1768          exit 1          exit 1
1769      else      else
1770          echo -n " $d"          printf " $d"
1771          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1772          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1773      fi      fi
1774  done  done
1775  echo  echo
1776    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1777  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1778      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1779  fi  fi
1780    
1781  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1782      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1783        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1784          EXEDIR=../exe          EXEDIR=../exe
1785      else      else
1786          EXEDIR=.          EXEDIR=.
# Line 934  if test "x${TOOLSDIR}" = x ; then Line 1795  if test "x${TOOLSDIR}" = x ; then
1795      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1796  fi  fi
1797  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1798      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1799      exit 1      exit 1
1800  fi  fi
1801  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1802      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1803        RETVAL=$?
1804        if test "x${RETVAL}" = x0 ; then
1805            S64='$(TOOLSDIR)/set64bitConst.sh'
1806        else
1807            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1808            RETVAL=$?
1809            if test "x${RETVAL}" = x0 ; then
1810                S64='$(TOOLSDIR)/set64bitConst.csh'
1811            else
1812                cat <<EOF
1813    
1814    ERROR: neither of the two default scripts:
1815    
1816        ${TOOLSDIR}/set64bitConst.sh
1817        ${TOOLSDIR}/set64bitConst.csh
1818    
1819      are working so please check paths or specify (with \$S64) a
1820      working version of this script.
1821    
1822    EOF
1823                exit 1
1824            fi
1825        fi
1826  fi  fi
1827  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1828    
# Line 955  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1839  if test -r $ROOTDIR"/eesupp/src/Makefile
1839          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1840      else      else
1841          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1842          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1843          exit 1          exit 1
1844      fi      fi
1845  fi  fi
1846    
1847    #same for pkg/exch2 and pkg/regrid
1848    for pdir in exch2 regrid ; do
1849        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1850            echo "  Making source files in pkg/${pdir} from templates"
1851            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1
1852            RETVAL=$?
1853            if test "x${RETVAL}" = x0 ; then
1854                rm -f make_${pdir}.errors
1855            else
1856                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1857                cat make_${pdir}.errors 1>&2
1858                exit 1
1859            fi
1860        fi
1861    done
1862    
1863  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1864  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1865      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 1015  else Line 1915  else
1915          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1916          RETVAL=$?          RETVAL=$?
1917          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1918              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1919              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1920              exit 1              exit 1
1921          fi          fi
# Line 1023  else Line 1923  else
1923              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1924          done          done
1925          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1926          expand_pkg_groups          RET=1
1927            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1928          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1929      fi      fi
1930  fi  fi
1931    
1932  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1933    for i in $PACKAGES ; do
1934        echo $i >> ./.tmp_pack
1935    done
1936    for i in `grep  "-" ./.tmp_pack` ; do
1937        j=`echo $i | sed 's/[-]//'`
1938        DISABLE="$DISABLE $j"
1939    done
1940  pack=  pack=
1941  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1942      addit="t"      addit="t"
# Line 1045  PACKAGES="$pack" Line 1953  PACKAGES="$pack"
1953  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1954  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1955  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1956    # Test if each explicitly referenced package exists
1957  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1958      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1959        if test ! -d "$ROOTDIR/pkg/$j" ; then
1960          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1961          exit 1          exit 1
1962      fi      fi
1963      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1964  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1965  PACKAGES=  PACKAGES=
1966  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1967      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1968  done  done
1969    rm -f ./.tmp_pack
1970  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1971    
1972    #  Check for package MNC: if NetCDF is available, then build the MNC
1973    #  template files ; otherwise, delete mnc from the list of packages.
1974    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1975    RETVAL=$?
1976    if test "x$RETVAL" = x0 ; then
1977        if test "x$HAVE_NETCDF" != xt ; then
1978            cat <<EOF
1979    
1980    *********************************************************************
1981    WARNING: the "mnc" package was enabled but tests failed to compile
1982      NetCDF applications.  Please check that:
1983    
1984      1) NetCDF is correctly installed for this compiler and
1985      2) the LIBS variable (within the "optfile") specifies the correct
1986           NetCDF library to link against.
1987    
1988      Due to this failure, the "mnc" package is now DISABLED.
1989    *********************************************************************
1990    
1991    EOF
1992            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1993            DISABLE="$DISABLE mnc"
1994        else
1995            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1996            RETVAL=$?
1997            if test "x${RETVAL}" = x0 ; then
1998                rm -f make_mnc.errors
1999            else
2000                echo "Error: problem encountered while building source files in pkg/mnc:"
2001                cat make_mnc.errors 1>&2
2002                exit 1
2003            fi
2004        fi
2005    fi
2006    
2007    #  Check for package PROFILES: if NetCDF is not available,
2008    #  then delete profiles from the list of available packages.
2009    echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1
2010    RETVAL=$?
2011    if test "x$RETVAL" = x0 ; then
2012        if test "x$HAVE_NETCDF" != xt ; then
2013            cat <<EOF
2014    
2015    *********************************************************************
2016    WARNING: the "profiles" package was enabled but tests failed to
2017      compile NetCDF applications.  Please check that:
2018    
2019      1) NetCDF is correctly installed for this compiler and
2020      2) the LIBS variable (within the "optfile") specifies the correct
2021           NetCDF library to link against.
2022    
2023      Due to this failure, the "profiles" package is now DISABLED.
2024    *********************************************************************
2025    
2026    EOF
2027            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2028            DISABLE="$DISABLE profiles"
2029        fi
2030    fi
2031    
2032  echo "  applying package dependency rules"  echo "  applying package dependency rules"
2033  ck=  ck=
2034  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
2035      i=0      i=0
2036      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2037      rtot=$nname      rtot=$nname
2038      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2039    
2040          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2041          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1100  while test "x$ck" != xtt ; do Line 2069  while test "x$ck" != xtt ; do
2069    
2070          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2071          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2072                #echo "   " $pname ": need to add :" $dname
2073              in_dis="f"              in_dis="f"
2074              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2075                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1124  while test "x$ck" != xtt ; do Line 2094  while test "x$ck" != xtt ; do
2094              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2095              exit 1              exit 1
2096          fi          fi
2097          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2098            #i=$(( $i + 1 ))
2099      done      done
2100      ck=$ck"t"      ck=$ck"t"
2101  done  done
# Line 1143  for i in $PACKAGES ; do Line 2114  for i in $PACKAGES ; do
2114      fi      fi
2115  done  done
2116    
   
2117  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2118  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2119  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 1163  for n in $names ; do Line 2133  for n in $names ; do
2133              fi              fi
2134          done          done
2135          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2136              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2137              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2138          fi          fi
2139      fi      fi
2140  done  done
2141  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2142  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2143      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2144      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2145  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2146    
# Line 1187  done Line 2157  done
2157    
2158  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
2159  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2160  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2161      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
2162  fi  fi
2163  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
2164      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
2165      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
2166          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2167          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2168          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2169      else              exit 1
2170          SOURCEDIRS="$SOURCEDIRS $adr"          else
2171      fi              SOURCEDIRS="$SOURCEDIRS $adr"
2172      adr="$ROOTDIR/$d/inc"          fi
2173      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
2174          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
2175          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2176          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2177      else              exit 1
2178          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
2179      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
2180  done          fi
2181        done
2182    fi
2183    
2184  echo "  Searching for *OPTIONS.h files in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2185  echo "    of \"#define \"-type statements that are no longer allowed:"  echo "    of \"#define \"-type statements that are no longer allowed:"
# Line 1252  for i in $SOURCEDIRS ; do Line 2224  for i in $SOURCEDIRS ; do
2224          cat $i/$j >> ad_files          cat $i/$j >> ad_files
2225      done      done
2226  done  done
2227    if test ! "x"$FS = "x.f" ; then
2228        cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f
2229        mv -f ad_files_f ad_files
2230    fi
2231    
2232  echo  echo
2233  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2234  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2235  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2236      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2237          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2238      fi      fi
2239  done  done
2240    
2241    if test ! "x$DIVA" = x ; then
2242        echo "  Creating the pseudo-MPI include directory"
2243        INCLUDES="-I./mpi_headers $INCLUDES"
2244        rm -rf ./mpi_headers
2245        mkdir -p ./mpi_headers
2246    
2247        if test "x$MPIINCLUDEDIR" = x ; then
2248            if test "x$MPIHOME" = x ; then
2249                MPIHOME='/usr'
2250            fi
2251            MPIINCLUDEDIR='$MPIHOME/include'
2252        fi
2253        
2254        if test -r $MPIINCLUDEDIR/mpif.h ; then
2255            for i in $MPI_HEADER_FILES; do
2256                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2257            done
2258    
2259            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2260        else
2261            echo " We cannot create a copy of mpif.h!"
2262    #       exit -1
2263        fi
2264    fi
2265    
2266  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2267  rm -rf .links.tmp  rm -rf .links.tmp
2268  mkdir .links.tmp  mkdir .links.tmp
2269    touch .links.tmp/foo
2270    if test ! -r ".links.tmp/foo" ; then
2271        echo
2272        echo "ERROR : something is wrong with your directory permissions or"
2273        echo "   your user file-creation mask (\"umask\") since creating a"
2274        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2275        echo "   not working.  Please try setting your umask to something"
2276        echo "   sane such as:"
2277        echo
2278        echo "      umask 0002"
2279        echo
2280        echo "   and please verify that you have the proper permissions for"
2281        echo "   creating sub-directories and then reading files created"
2282        echo "   within them."
2283        echo
2284        exit 1
2285    fi
2286    rm -f .links.tmp/foo
2287  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2288  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2289  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
2290  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
2291  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
2292  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
2293  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
2294  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2295  for d in $alldirs ; do  for d in $alldirs ; do
2296      deplist=      deplist=
# Line 1282  for d in $alldirs ; do Line 2299  for d in $alldirs ; do
2299      for sf in $sfiles ; do      for sf in $sfiles ; do
2300          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2301              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2302                    ignore_f=f
2303                  case $d/$sf in                  case $d/$sf in
2304                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2305                            ignore_f=t
2306                          ;;                          ;;
2307                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2308                            ignore_f=t
2309                          ;;                          ;;
2310                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2311                            ignore_f=t
2312                          ;;                          ;;
2313                    *)                    ./BUILD_INFO.h)
2314                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
                         ;;  
                 esac  
                 extn=`echo $sf | $AWK -F '.' '{print $NF}'`  
                 case $extn in  
                     F)  
                         echo    " \\"  >> srclist.inc  
                         echo -n " $sf" >> srclist.inc  
                         ;;  
                     F90)  
                         echo    " \\"  >> f90srclist.inc  
                         echo -n " $sf" >> f90srclist.inc  
                         ;;  
                     c)  
                         echo    " \\"  >> csrclist.inc  
                         echo -n " $sf" >> csrclist.inc  
2315                          ;;                          ;;
2316                      h)                    ./EMBEDDED_FILES.h)
2317                          echo    " \\"  >> hlist.inc                          ignore_f=t
                         echo -n " $sf" >> hlist.inc  
2318                          ;;                          ;;
2319                      flow)                    *)
2320                          echo    " \\"  >> ad_flow_files.inc                          #  For the local directory *ONLY*,
2321                          echo -n " $sf" >> ad_flow_files.inc                          #  ignore all soft-links
2322                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2323                                ignore_f=t
2324                            else
2325                                touch .links.tmp/$sf
2326                                deplist="$deplist $sf"
2327                            fi
2328                          ;;                          ;;
2329                  esac                  esac
2330                    if test "x$ignore_f" = xf ; then
2331                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2332                        case $extn in
2333                            F)
2334                                echo    " \\"  >> srclist.inc
2335                                printf " $sf" >> srclist.inc
2336                                ;;
2337                            F90)
2338                                echo    " \\"  >> f90srclist.inc
2339                                printf " $sf" >> f90srclist.inc
2340                                ;;
2341                            c)
2342                                echo    " \\"  >> csrclist.inc
2343                                printf " $sf" >> csrclist.inc
2344                                ;;
2345                            h)
2346                                echo    " \\"  >> hlist.inc
2347                                printf " $sf" >> hlist.inc
2348                                ;;
2349                            flow)
2350                                echo    " \\"  >> ad_flow_files.inc
2351                                printf " $sf" >> ad_flow_files.inc
2352                                ;;
2353                        esac
2354                    fi
2355              fi              fi
2356          fi          fi
2357      done      done
# Line 1334  echo "" >> f90srclist.inc Line 2369  echo "" >> f90srclist.inc
2369  echo "" >> hlist.inc  echo "" >> hlist.inc
2370  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
2371    
2372  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2373      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
2374  fi  fi
2375  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1343  echo "#    $MACHINE" >> $MAKEFILE Line 2378  echo "#    $MACHINE" >> $MAKEFILE
2378  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2379  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2380  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2381  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
2382  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2383  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2384    
2385  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2386  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
# Line 1391  ENABLED_PACKAGES = ${ENABLED_PACKAGES} Line 2426  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2426  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2427    
2428  # These files are created by Makefile  # These files are created by Makefile
2429  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2430  EOF  EOF
2431    
2432  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2433        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2434    else
2435        echo "EMBEDDED_FILES = " >>$MAKEFILE
2436    fi
2437    
2438    #  Note: figure out some way to add Hyades JAM libraries here
2439  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2440  # Unix ln (link)  # Unix ln (link)
2441  LN = ${LN}  LN = ${LN}
# Line 1410  KPP = ${KPP} Line 2449  KPP = ${KPP}
2449  FC = ${FC}  FC = ${FC}
2450  # Fortran compiler  # Fortran compiler
2451  F90C = ${F90C}  F90C = ${F90C}
2452    # C compiler
2453    CC = ${CC}
2454  # Link editor  # Link editor
2455  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2456    
2457  # Defines for CPP  # Defines for CPP
2458  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1421  INCLUDES = ${INCLUDES} Line 2462  INCLUDES = ${INCLUDES}
2462  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2463  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2464  # Optim./debug for FC  # Optim./debug for FC
2465  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2466  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2467  # Optim./debug for FC  # Optim./debug for FC
2468  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
# Line 1432  CFLAGS = ${CFLAGS} Line 2473  CFLAGS = ${CFLAGS}
2473  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2474  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2475  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2476  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2477  # Name of the Mekfile  # Name of the Mekfile
2478  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2479    
# Line 1443  cat csrclist.inc      >> $MAKEFILE Line 2484  cat csrclist.inc      >> $MAKEFILE
2484  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2485  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2486  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2487  echo               >> $MAKEFILE  echo >> $MAKEFILE
2488  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2489  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE
2490  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2491    echo >> $MAKEFILE
2492    echo '.SUFFIXES:' >> $MAKEFILE
2493    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2494  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2495  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2496    
2497  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2498    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2499  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2500  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2501          @echo Creating \$@ ...          @echo Creating \$@ ...
2502          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2503  depend:  depend:
2504          @make links          @make links
2505          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2506          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2507            -rm -f makedepend.out
2508    
2509    lib: libmitgcmuv.a
2510    
2511    libmitgcmuv.a: \$(OBJFILES)
2512            ar rcv libmitgcmuv.a \$(OBJFILES)
2513            ar d   libmitgcmuv.a main.o
2514    
2515  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2516    
# Line 1474  output.txt: \$(EXECUTABLE) Line 2521  output.txt: \$(EXECUTABLE)
2521          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2522    
2523  clean:  clean:
2524          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2525            -rm -rf *.o
2526            -rm -rf *.$FS
2527  Clean:  Clean:
2528          @make clean          @make clean
2529          @make cleanlinks          @make cleanlinks
2530          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES)
2531          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2532            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2533  CLEAN:  CLEAN:
2534          @make Clean          @make Clean
2535          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2536          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2537          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2538          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime
2539            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2540            -rm -rf mnc_test_*
2541    
2542  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2543  makefile:  makefile:
2544          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
2545  cleanlinks:  cleanlinks:
2546          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2547    
2548  # Special targets ($SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are create by make
2549  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2550          @echo Creating \$@ ...          @echo Creating \$@ ...
2551          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2552  AD_CONFIG.h:  AD_CONFIG.h:
2553          @echo Creating \$@ ...          @echo Creating \$@ ...
2554          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2555  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2556          @echo Creating \$@ ...          @echo Creating \$@ ...
2557          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
2558    
2559  # The normal chain of rules is (  .F - .f - .o  )  BUILD_INFO.h:
2560  .F.f:          @echo Creating \$@ ...
2561    EOF
2562    
2563    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2564    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2565    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2566    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2567    
2568    if test "x$EMBED_SRC" = xt ; then
2569        cat >>$MAKEFILE <<EOF
2570    
2571    decode_files.o : EMBEDDED_FILES.h
2572    
2573    ##  \$(F77FILES)
2574    all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2575            @echo Creating \$@ ...
2576            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile
2577            -rm -f all_fF.tar.gz
2578            -gzip all_fF.tar
2579    
2580    EMBEDDED_FILES.h : all_fF.tar.gz
2581            @echo Creating \$@ ...
2582            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2583    
2584    EOF
2585    fi
2586    
2587    cat >>$MAKEFILE <<EOF
2588    
2589    # The normal chain of rules is (  .F - .$FS - .o  )
2590    
2591    ## This nullifies any default implicit rules concerning these two file types:
2592    ## %.o : %.F
2593    
2594    .F.$FS:
2595          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2596  .f.o:  .$FS.o:
2597          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2598  .F90.f90:  .F90.o:  
         \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  
 .f90.o:  
2599          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2600  .c.o:  .c.o:
2601          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2602    
2603  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2604  .F.p:  .F.p:
2605          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2606  .p.f:  .p.$FS:
2607          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2608    
2609  #=========================================  #=========================================
# Line 1538  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2622  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2622  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2623  for i in $ad_vars ; do  for i in $ad_vars ; do
2624      name=$i      name=$i
2625      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2626      eval $t1      eval $t1
2627      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2628      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2629  done  done
2630    
2631  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2632  echo >> $MAKEFILE  echo >> $MAKEFILE
2633  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2634  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2635  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2636      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2637      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2638  done  done
2639  echo >> $MAKEFILE  echo >> $MAKEFILE
2640  rm -f ad_files  rm -f ad_files
# Line 1558  rm -f ad_files Line 2642  rm -f ad_files
2642  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2643    
2644  # ... AD ...  # ... AD ...
2645  adall: ad_taf  adall: \$(EXE_AD)
2646  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2647  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2648    
2649  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2650          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2651          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2652          -rm -f ad_config.template          -rm -f ad_config.template
2653          @make \$(F77FILES)          @make \$(F77FILES)
2654          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2655          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2656    
2657  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2658          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2659          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2660    
2661  adtafonly:  adtafonly:
2662          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2663          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2664    
2665  ad_taf: ad_taf_output.o \$(OBJFILES)  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2666          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2667    
2668  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2669          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2670          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2671    
2672  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2673          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2674    
2675    adonlyfwd:
2676            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2677    
2678    adtrick:
2679            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2680    
2681  # ... FTL ...  # ... FTL ...
2682  ftlall: ftl_taf  ftlall: ftl_taf
2683  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2684  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2685    
2686  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2687          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2688          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2689          -rm -f ftl_config.template          -rm -f ftl_config.template
2690          @make \$(F77FILES)          @make \$(F77FILES)
2691          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2692          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2693    
2694  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2695          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2696          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2697    
2698  ftltafonly:  ftltafonly:
2699          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2700          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2701    
2702  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2703          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2704    
2705  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2706          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2707          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2708    
2709  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2710          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2711    
2712    
2713  # ... SVD ...  # ... SVD ...
2714  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2715  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2716            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2717    svdall: svd_touch svd_taf
2718    
2719  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
2720          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2721    
2722            @echo "--->>> Only COMPILE svd code! <<<---"
2723            @echo "--->>> Assumes you previously <<<---"
2724            @echo "--->>> did make svdtaf        <<<---"
2725    
2726    svd_touch:
2727            @echo "--->>> Only COMPILE svd code! <<<---"
2728            @echo "--->>> Assumes you previously <<<---"
2729            @echo "--->>> did make svdtaf        <<<---"
2730            touch ad_taf_output.$FS ftl_taf_output.$FS
2731            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2732            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2733            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2734            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2735            -rm -f ftl_config.template
2736    
2737  #=========================================  #=========================================
2738    
# Line 1644  for i in $KPPFILES ; do Line 2749  for i in $KPPFILES ; do
2749      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2750          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2751      fi      fi
2752      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2753  done  done
2754    
2755  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1654  for i in $NOOPTFILES ; do Line 2759  for i in $NOOPTFILES ; do
2759      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2760          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2761      fi      fi
2762      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2763      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2764  done  done
2765    
# Line 1668  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2773  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2773  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2774    
2775  # Create special header files  # Create special header files
2776  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2777  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
2778      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2779  else  else
2780      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2781      RETVAL=$?      RETVAL=$?
2782      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
2783          rm -f $PACKAGES_DOT_H".tmp"          rm -f $PACKAGES_DOT_H".tmp"
# Line 1682  else Line 2787  else
2787      fi      fi
2788  fi  fi
2789  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
2790      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2791  fi  fi
2792    
2793    
2794  #  Write the "state" for future records  #  Write the "state" for future records
2795  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2796      echo -n "" > genmake_state      printf "" > genmake_state
2797      for i in $gm_state ; do      for i in $gm_state ; do
2798          t1="t2=\$$i"          t1="t2=\$$i"
2799          eval $t1          eval $t1

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