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revision 1.1 by edhill, Sat Aug 16 14:01:08 2003 UTC revision 1.53 by edhill, Fri Dec 5 15:08:33 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20    }
21    
22    # Search for particular CPP #cmds associated with MPI
23    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24    test_for_mpi_in_cpp_eeoptions() {
25        cpp_options=$1
26        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38        RETVAL=$?
39        if test "x${RETVAL}" = x0 ; then
40            echo -n "Error: In $file there is an illegal line: "
41            grep -i "$strng" $file
42            return 1
43        fi
44        return 0
45    }
46    
47    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
48    # the package list.
49    expand_pkg_groups() {
50        new_packages=
51        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52        if test -r $PKG_GROUPS ; then
53            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55            matched=0
56            for i in $PACKAGES ; do
57                line=`grep "^ *$i" ./p2.tmp`
58                RETVAL=$?
59                if test "x$RETVAL" = x0 ; then
60                    matched=1
61                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                    echo "    replacing \"$i\" with: $replace"
63                    new_packages="$new_packages $replace"
64                else
65                    new_packages="$new_packages $i"
66                fi
67            done
68            PACKAGES=$new_packages
69            rm -f ./p[1,2].tmp
70        else
71            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
72        fi
73    }
74    
75  # Guess possible config options for this host  # Guess possible config options for this host
76  find_possible_configs()  {  find_possible_configs()  {
77    
78      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
79      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
82      p_LN=      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
83        echo "  The platform appears to be:  $PLATFORM"
84        
85      echo "test" > test      echo "test" > test
86      ln -s ./test link      ln -s ./test link
87      RETVAL=$?      RETVAL=$?
88      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
89          p_LN="ln -s"          LN="ln -s"
90        else
91            echo "Error: \"ln -s\" does not appear to work on this system!"
92            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
93            exit 1
94      fi      fi
95      rm -f test link      rm -f test link
96    
97      p_CPP=`which cpp`      if test "x$CPP" = x ; then
98                CPP="cpp -traditional -P"
99      RETVAL=$?      fi
100      if test "x${RETVAL}" = x0 ; then  
101          p_LN="ln -s"      # makedepend is not always available
102        if test "x${MAKEDEPEND}" = x ; then
103          which makedepend >& /dev/null
104          RETVAL=$?
105          if test "x${RETVAL}" = x1 ; then
106             echo "    makedepend was not found. Using xmakedpend instead."
107             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
108          fi
109      fi      fi
     rm -f test link  
110    
111      # look for possible fortran compilers      # look for possible fortran compilers
112        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
113      p_FC=      p_FC=
114      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      for c in $tmp ; do
115          which $c > /dev/null 2>&1          rm -f ./hello.f ./hello
116            cat >> hello.f <<EOF
117          program hello
118          do i=1,3
119            print *, 'hello world : ', i
120          enddo
121          end
122    EOF
123            $c -o hello hello.f > /dev/null 2>&1
124          RETVAL=$?          RETVAL=$?
125          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
126              p_FC="$p_FC $c"              p_FC="$p_FC $c"
127          fi          fi
128      done      done
129      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./hello.f ./hello
130      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
131          echo "  None found!!!"          cat 1>&2 <<EOF
132      else  
133          echo "  "$p_FC  Error: No Fortran compilers were found in your path.  Please specify one using:
134      fi  
135        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
136        2) a command-line option (eg. "-fc NAME"), or
137        3) the MITGCM_FC environment variable.
138    
     # look for possible MPI libraries  
     mpi_libs=  
     mpi_fort=`which mpif77 2>/dev/null`  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         cat >>test.f <<EOF  
       PROGRAM HELLO  
       DO 10, I=1,10  
       PRINT *,'Hello World'  
    10 CONTINUE  
       STOP  
       END  
139  EOF  EOF
140          eval "$mpi_fort -showme test.f > out"          exit 1
141          RETVAL=$?      else
142          if test "x${RETVAL}" = x0 ; then          echo "  The possible FORTRAN compilers found in your path are:"
143              a=`cat out`          echo "   "$p_FC
144              for i in $a ; do          if test "x$FC" = x ; then
145                  case $i in              FC=`echo $p_FC | $AWK '{print $1}'`
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
146          fi          fi
         rm -f test.f out  
147      fi      fi
148    
149  }      for i in $p_FC ; do
150            p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
151            if test -r $p_OF ; then
152                OPTFILE=$p_OF
153                echo "  The options file:  $p_OF"
154                echo "    appears to match so we'll use it."
155                break
156            fi
157        done
158        if test "x$OPTFILE" = x ; then
159            cat 1>&2 <<EOF
160    
161  parse_options()  {  Error: No options file was found in:  $ROOTDIR/tools/build_options/
162      that matches this platform ("$PLATFORM") and the compilers found in
163      your path.  Please specify an "optfile" using:
164    
165      ac_prev=      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
166      for ac_option in "${OPTIONS[@]}" ; do      2) the MITGCM_OF environment variable.
167    
168      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
169    
170    EOF
171            exit 1
172        fi
173        
174    #     # look for possible MPI libraries
175    #     mpi_libs=
176    #     mpi_fort=`which mpif77 2>/dev/null`
177    #     RETVAL=$?
178    #     if test "x${RETVAL}" = x0 ; then
179    #       cat >>test.f <<EOF
180    #       PROGRAM HELLO
181    #       DO 10, I=1,10
182    #       PRINT *,'Hello World'
183    #    10 CONTINUE
184    #       STOP
185    #       END
186    # EOF
187    #       eval "$mpi_fort -showme test.f > out"
188    #       RETVAL=$?
189    #       if test "x${RETVAL}" = x0 ; then
190    #           a=`cat out`
191    #           for i in $a ; do
192    #               case $i in
193    #                   -*)
194    #                       mpi_libs="$mpi_libs $i" ;;
195    #               esac
196    #           done
197    #           echo "The MPI libs appear to be:"
198    #           echo "  "$mpi_libs
199    #       fi
200    #       rm -f test.f out
201    #     fi
202    
         # echo "ac_option = :$ac_option:"  
           
         # If the previous option needs an argument, assign it.  
         if test -n "$ac_prev"; then  
             eval "$ac_prev=\$ac_option"  
             ac_prev=  
             continue  
         fi  
           
         ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`  
           
         case $ac_option in  
               
             -help | --help | -h | --h)  
                 usage ;;  
               
             -nooptfile | --nooptfile)  
                 OPTFILE="NONE" ;;  
             -optfile | --optfile | -of | --of)  
                 ac_prev=optfile ;;  
             -optfile=* | --optfile=* | -of=* | --of=*)  
                 OPTFILE=$ac_optarg ;;  
               
             -pdepend | --pdepend)  
                 ac_prev=pdepend ;;  
             -pdepend=* | --pdepend=*)  
                 PDEPEND=$ac_optarg ;;  
               
             -pdefault | --pdefault)  
                 ac_prev=pdefault ;;  
             -pdefault=* | --pdefault=*)  
                 PDEFAULT=$ac_optarg ;;  
               
             -makefile | -ma)  
                 ac_prev=makefile ;;  
             --makefile=* | -ma=*)  
                 MAKEFILE=$ac_optarg ;;  
               
             -platform | --platform | -pl | --pl)  
                 ac_prev=platform ;;  
             -platform=* | --platform=* | -pl=* | --pl=*)  
                 PLATFORM=$ac_optarg ;;  
   
             -rootdir | --rootdir | -rd | --rd)  
                 ac_prev=rootdir ;;  
             -rootdir=* | --rootdir=* | -rd=* | --rd=*)  
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
203  }  }
204    
205  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 208  get_pdepend_list()  {
208      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
209      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
210      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
211          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
212          > ./.pd_tmp          > ./.pd_tmp
213      source ./.pd_tmp      . ./.pd_tmp
214      rm -f ./.pd_tmp      rm -f ./.pd_tmp
215    
216      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 210  get_pdepend_list()  { Line 219  get_pdepend_list()  {
219    
220  #  Explain usage  #  Explain usage
221  usage()  {  usage()  {
222      echo ""  cat <<EOF
223      echo "Usage: "$0" [OPTIONS]"  
224      echo "  where [OPTIONS] can be:"$'\n'  Usage: "$0" [OPTIONS]
225      echo "    -help | --help | -h | --h"    where [OPTIONS] can be:
226      echo "    -nooptfile | --nooptfile"  
227      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"      -help | --help | -h | --h
228      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"            Print this help message and exit.
229      echo "    -pdepend NAME | --pdepend NAME"  
230      echo "      -pdepend=NAME | --pdepend=NAME"      -nooptfile | --nooptfile
231      echo "    -pdefault NAME | --pdefault NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
232      echo "      -pdefault=NAME | --pdefault=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
233      echo "    -makefile NAME | -ma NAME"            Use "NAME" as the optfile.  By default, an attempt will be
234      echo "      --makefile=NAME | -ma=NAME"            made to find an appropriate "standard" optfile in the
235      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            tools/build_options/ directory.
236      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  
237      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      -pdepend NAME | --pdepend NAME
238      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"        -pdepend=NAME | --pdepend=NAME
239      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"            Get package dependency information from "NAME".
240      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
241      echo "    -disable NAME | --disable NAME"      -pdefault NAME | --pdefault NAME
242      echo "      -disable=NAME | --disable=NAME"        -pdefault=NAME | --pdefault=NAME
243      echo "    -enable NAME | --enable NAME"            Get the default package list from "NAME".
244      echo "      -enable=NAME | --enable=NAME"  
245      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
246      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
247  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
248  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
249      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
250      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
251      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
252      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
253      echo "    -[no]jam | --[no]jam"$'\n'  
254      echo "  and NAME is a string such as:"$'\n'      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
255      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
256      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            Specify the location of the MITgcm ROOTDIR as "NAME".
257      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"$'\n'            By default, genamke will try to find the location by
258      echo "  which, depending upon your shell, may need to be single-quoted"            looking in parent directories (up to the 5th parent).
259      echo "  if it contains spaces, dashes, or other special characters."  
260        -mods NAME | --mods NAME | -mo NAME | --mo NAME
261          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
262              Here, "NAME" specifies a list of directories that are
263              used for additional source code.  Files found in the
264              "mods list" are given preference over files of the same
265              name found elsewhere.
266    
267        -disable NAME | --disable NAME
268          -disable=NAME | --disable=NAME
269              Here "NAME" specifies a list of packages that we don't
270              want to use.  If this violates package dependencies,
271              genamke will exit with an error message.
272    
273        -enable NAME | --enable NAME
274          -enable=NAME | --enable=NAME
275              Here "NAME" specifies a list of packages that we wish
276              to specifically enable.  If this violates package
277              dependencies, genamke will exit with an error message.
278    
279        -standarddirs NAME | --standarddirs NAME
280          -standarddirs=NAME | --standarddirs=NAME
281              Here, "NAME" specifies a list of directories to be
282              used as the "standard" code.
283    
284        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
285          -fc=NAME | --fc=NAME
286              Use "NAME" as the fortran compiler.  By default, genmake
287              will search for a working compiler by trying a list of
288              "usual suspects" such as g77, f77, etc.
289    
290        -[no]ieee | --[no]ieee
291              Do or don't use IEEE numerics.  Note that this option
292              *only* works if it is supported by the OPTFILE that
293              is being used.
294    
295      While it is most often a single word, the "NAME" variables specified
296      above can in many cases be a space-delimited string such as:
297    
298        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
299        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
300        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
301    
302      which, depending upon your shell, may need to be single-quoted.
303    
304      For more detailed genmake documentation, please see:
305    
306        http://mitgcm.org/devel_HOWTO/
307    
308    EOF
309    
310      exit 1      exit 1
311  }  }
312    
313  # Dump all important state  #  Build a CPP macro to automate calling C routines from FORTRAN
314  dump_state()  {  get_fortran_c_namemangling()  {
315      fname=$1      default_nm="#define FC_NAMEMANGLE(X) X ## _"
316      echo " " > $fname      
317        cat > genmake_test.c <<EOF
318    void tcall( char * string ) { tsub( string ); }
319    EOF
320        $MAKE genmake_test.o >> genmake_warnings 2>&1
321      RETVAL=$?      RETVAL=$?
322      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" != x0 ; then
323          echo "Error: cannot write to $fname"          FC_NAMEMANGLE=$default_nm
324          exit 1          cat <<EOF>> genmake_errors
325    
326    WARNING: C test compile fails
327    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
328    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
329    EOF
330            return 1
331        fi
332        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
333        RETVAL=$?
334        if test "x$RETVAL" != x0 ; then
335            FC_NAMEMANGLE=$default_nm
336            cat <<EOF>> genmake_warnings
337    
338    WARNING: The "nm" command failed.
339    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
340    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
341    EOF
342            return 1
343        fi
344        cat > genmake_tcomp.f <<EOF
345          subroutine tcall( string )
346          character*(*) string
347          call tsub( string )
348          end
349    EOF
350        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
351        RETVAL=$?
352        if test "x$RETVAL" != x0 ; then
353            FC_NAMEMANGLE=$default_nm
354            cat <<EOF>> genmake_warnings
355    
356    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
357    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
358    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
359    EOF
360            return 1
361      fi      fi
362      echo "makefile "$makefile > $fname      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
363        RETVAL=$?
364        if test "x$RETVAL" != x0 ; then
365            FC_NAMEMANGLE=$default_nm
366            cat <<EOF>> genmake_warnings
367    
368    WARNING: The "nm" command failed.
369    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
370    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
371    EOF
372            return 1
373        fi
374    
375        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
376        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
377        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
378        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
379    
380        nmangle="X"
381        if test "x$c_a" != "x$f_a" ; then
382            comm="echo x$f_a | sed -e 's|x$c_a||'"
383            a=`eval $comm`
384            nmangle="$a ## $nmangle"
385        fi
386        if test "x$c_b" != "x$f_b" ; then
387            comm="echo x$f_b | sed -e 's|x$c_b||'"
388            b=`eval $comm`
389            nmangle="$nmangle ## $b"
390        fi
391    
392        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
393    
394        #  cleanup the testing files
395        rm -f genmake_tcomp.* genmake_test.*
396  }  }
397    
398    
399  #eh3 # This is the generic configuration.  check_HAVE_CLOC()  {
400  #eh3 set LN         = ( 'ln -s' )      get_fortran_c_namemangling
401  #eh3 set CPP        = ( '/lib/cpp -P' )      cat <<EOF > genmake_tc_1.c
402  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  $FC_NAMEMANGLE
403  #eh3 set KPP        = (  )  #include <stdio.h>
404  #eh3 set FC         = ( 'f77' )  #include <stdlib.h>
405  #eh3 set LINK       = $FC  #include <unistd.h>
406  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <assert.h>
407  #eh3 set INCLUDES   = ( -I. )  #include <sys/time.h>
408  #eh3 set FFLAGS     = (  )  void FC_NAMEMANGLE(cloc) ( double *curtim )
409  #eh3 set FOPTIM     = (  )  {
410  #eh3 set CFLAGS     = (  )   struct timeval tv1;
411  #eh3 set KFLAGS1    = (  )   gettimeofday(&tv1 , (void *)NULL );
412  #eh3 set KFLAGS2    = (  )   *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
413  #eh3 set LIBS       = (  )   *curtim = *curtim/1.E6;
414  #eh3 set KPPFILES   = (  )  }
415  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
416  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      make genmake_tc_1.o >> genmake_tc.log 2>&1
417        RET_C=$?
418        cat <<EOF > genmake_tc_2.f
419          program hello
420          Real*8 wtime
421          external cloc
422          call cloc(wtime)
423          print *," HELLO WORLD", wtime
424          end program hello
425    EOF
426        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
427        RET_F=$?
428        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
429        RETVAL=$?
430        if test "x$RETVAL" = x0 ; then
431            HAVE_CLOC=t
432            DEFINES="$DEFINES -DHAVE_CLOC"
433        fi
434        rm -f genmake_tc*
435    }
436    
437    
438  #  Set defaults here  #  Set defaults here
439    COMMANDL="$0 $@"
440    
441  PLATFORM=  PLATFORM=
442  LN=  LN=
443  S64=  S64=
444  KPP=  KPP=
445  FC=  FC=
446  LINK=  LINK=
447    # DEFINES="-DWORDLENGTH=4"
448    DEFINES=
449  PACKAGES=  PACKAGES=
450  ENABLE=  ENABLE=
451  DISABLE=  DISABLE=
452  MAKEFILE=  MAKEFILE=
453  MAKEDEPEND=  MAKEDEPEND=
454  PDEPEND=  PDEPEND=
455    DUMPSTATE=t
456  PDEFAULT=  PDEFAULT=
457  OPTFILE=  OPTFILE=
458  INCLUDES=-I.  INCLUDES="-I."
459  FFLAGS=  FFLAGS=
460  FOPTIM=  FOPTIM=
461  CFLAGS=  CFLAGS=
# Line 309  KPPFILES= Line 466  KPPFILES=
466  NOOPTFILES=  NOOPTFILES=
467  NOOPTFLAGS=  NOOPTFLAGS=
468    
469    # DEFINES checked by test compilation
470    HAVE_SYSTEM=
471    HAVE_FDATE=
472    FC_NAMEMANGLE=
473    HAVE_CLOC=
474    
475  MODS=  MODS=
476  TOOLSDIR=  TOOLSDIR=
477  SOURCEDIRS=  SOURCEDIRS=
478  INCLUDEDIRS=  INCLUDEDIRS=
479    STANDARDDIRS=
480    
481  PWD=`pwd`  PWD=`pwd`
482  MAKE=make  MAKE=make
483    AWK=awk
484  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
485  THISCWD=`pwd`  THISCWD=`pwd`
486  THISDATE=`date`  THISDATE=`date`
487  MACHINE=`uname -a`  MACHINE=`uname -a`
488    EXECUTABLE=
489    EXEHOOK=
490    EXEDIR=
491    PACKAGES_CONF=
492    IEEE=
493    if test "x$MITGCM_IEEE" != x ; then
494        IEEE=$MITGCM_IEEE
495    fi
496    
497    AUTODIFF_PKG_USED=f
498    AD_OPTFILE=
499    TAF=
500    AD_TAF_FLAGS=
501    FTL_TAF_FLAGS=
502    SVD_TAF_FLAGS=
503    TAF_EXTRA=
504    TAMC=
505    AD_TAMC_FLAGS=
506    FTL_TAF_FLAGS=
507    SVD_TAMC_FLAGS=
508    TAMC_EXTRA=
509    
510    
511    #  The following state can be set directly by command-line switches
512    gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
513    gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
514    
515    #  The following state is not directly set by command-line switches
516    gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
517    gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
518    gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
519    gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
520    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
521    
522    #  The following are all related to adjoint/tangent-linear stuff
523    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
524    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
525    gm_s12="TAF_EXTRA TAMC_EXTRA"
526    
527    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
528    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
529    
530    cat <<EOF
531    
532    GENMAKE :
533    
534  echo $'\n'"===  Processing options files and arguments  ==="  A program for GENerating MAKEfiles for the MITgcm project.  For a
535  gm_local="./gm_local"  quick list of options, use "genmake -h" or for more detail see:
536    
537      http://mitgcm.org/devel_HOWTO/
538    
539    EOF
540    
541    echo "===  Processing options files and arguments  ==="
542    gm_local="genmake_local"
543    for i in . $MODS ; do
544        if test -r $i/$gm_local ; then
545            . $i/$gm_local
546            break
547        fi
548    done
549  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
550  if test -e $gm_local ; then  if test -e $gm_local ; then
551      echo "using $gm_local"      echo "using $gm_local"
552      source $gm_local      . $gm_local
553      echo "DISABLE=$DISABLE"$'\n'"ENABLE=$ENABLE"      # echo "DISABLE=$DISABLE"
554        # echo "ENABLE=$ENABLE"
555  else  else
556      echo "none found"      echo "none found"
557  fi  fi
558    
559  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"
560  OPTIONS=()  #OPTIONS=
561  n=0  #n=0
562  for i ; do  #for i ; do
563     setvar="OPTIONS[$n]='$i'"  #   echo "$i  $n"
564     #  echo "  $setvar"  #   setvar="OPTIONS[$n]='$i'"
565     eval "$setvar"  #   #  echo "  $setvar"
566     n=$(( $n + 1 ))  #   eval "$setvar"
567  done  #   n=$(( $n + 1 ))
568  parse_options  #done
569    #parse_options
570  echo "  getting OPTFILE information:  "  ac_prev=
571  if test "x${OPTFILE}" = x ; then  for ac_option ; do
572      echo "Warning: no OPTFILE specified so we'll look for possible settings"  
573      echo $'\n'"===  Searching for possible settings for OPTFILE  ==="      # If the previous option needs an argument, assign it.
574      find_possible_configs      if test -n "$ac_prev"; then
575  else          eval "$ac_prev=\$ac_option"
576      if test "x$OPTFILE" = xNONE ; then          ac_prev=
577          echo "    OPTFILE=NONE so we'll try to use default settings"          continue
     else  
         if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  
             echo "    using OPTFILE=\"$OPTFILE\""  
             source "$OPTFILE"  
             RETVAL=$?  
             if test "x$RETVAL" != x0 ; then  
                 echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
                 echo "--please check that variable syntax is bash-compatible"  
                 exit 1  
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
             exit 1  
         fi  
578      fi      fi
579  fi      
580        ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
581        
582        case $ac_option in
583            
584            -help | --help | -h | --h)
585                usage ;;
586            
587            -nooptfile | --nooptfile)
588                OPTFILE="NONE" ;;
589            -optfile | --optfile | -of | --of)
590                ac_prev=OPTFILE ;;
591            -optfile=* | --optfile=* | -of=* | --of=*)
592                OPTFILE=$ac_optarg ;;
593            
594            -adoptfile | --adoptfile | -adof | --adof)
595                ac_prev=AD_OPTFILE ;;
596            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
597                AD_OPTFILE=$ac_optarg ;;
598            
599            -pdepend | --pdepend)
600                ac_prev=PDEPEND ;;
601            -pdepend=* | --pdepend=*)
602                PDEPEND=$ac_optarg ;;
603            
604            -pdefault | --pdefault)
605                ac_prev=PDEFAULT ;;
606            -pdefault=* | --pdefault=*)
607                PDEFAULT=$ac_optarg ;;
608            
609            -make | --make | -m | --m)
610                ac_prev=MAKE ;;
611            -make=* | --make=* | -m=* | --m=*)
612                MAKE=$ac_optarg ;;
613            
614            -makefile | --makefile | -ma | --ma)
615                ac_prev=MAKEFILE ;;
616            -makefile=* | --makefile=* | -ma=* | --ma=*)
617                MAKEFILE=$ac_optarg ;;
618            
619            -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
620                echo "ERROR: The platform option has been removed.  Please specify"
621                echo "  the build options using the \"optfile\" mechanism."
622                echo
623                usage
624                ;;
625            
626            -rootdir | --rootdir | -rd | --rd)
627                ac_prev=ROOTDIR ;;
628            -rootdir=* | --rootdir=* | -rd=* | --rd=*)
629                ROOTDIR=$ac_optarg ;;
630            
631            -mods | --mods | -mo | --mo)
632                ac_prev=MODS ;;
633            -mods=* | --mods=* | -mo=* | --mo=*)
634                MODS=$ac_optarg ;;
635            
636            -disable | --disable)
637                ac_prev=DISABLE ;;
638            -disable=* | --disable=*)
639                DISABLE=$ac_optarg ;;
640            
641            -enable | --enable)
642                ac_prev=ENABLE ;;
643            -enable=* | --enable=*)
644                ENABLE=$ac_optarg ;;
645            
646            -standarddirs | --standarddirs)
647                ac_prev=STANDARDDIRS ;;
648            -standarddirs=* | --standarddirs=*)
649                STANDARDDIRS=$ac_optarg ;;
650    
651  echo $'\n'"===  Setting defaults  ==="  #           -cpp | --cpp)
652  echo -n "  Adding MODS directories:  "  #               ac_prev=cpp ;;
653  for d in $MODS ; do  #           -cpp=* | --cpp=*)
654      if test ! -d $d ; then  #               CPP=$ac_optarg ;;
655          echo $'\n\n'"Error: MODS directory \"$d\" not found!"              
656          exit 1          -fortran | --fortran | -fc | --fc)
657      else              ac_prev=FC ;;
658          echo -n " $d"          -fc=* | --fc=*)
659          SOURCEDIRS="$SOURCEDIRS $d"              FC=$ac_optarg ;;
660          INCLUDEDIRS="$INCLUDEDIRS $d"          
661      fi          -ieee | --ieee)
662                IEEE=true ;;
663            -noieee | --noieee)
664                IEEE= ;;
665            
666    #       -jam | --jam)
667    #           JAM=1 ;;
668    #       -nojam | --nojam)
669    #           JAM=0 ;;
670            
671            -ds | --ds)
672                DUMPSTATE=t ;;
673            
674            -taf_extra | --taf_extra)
675                ac_prev=TAF_EXTRA ;;
676            -taf_extra=* | --taf_extra=*)
677                TAF_EXTRA=$ac_optarg ;;
678    
679            -tamc_extra | --tamc_extra)
680                ac_prev=TAMC_EXTRA ;;
681            -tamc_extra=* | --tamc_extra=*)
682                TAMC_EXTRA=$ac_optarg ;;
683    
684            -*)
685                echo "Error: unrecognized option: "$ac_option
686                usage
687                ;;
688            
689            *)
690                echo "Error: unrecognized argument: "$ac_option
691                usage
692                ;;
693            
694        esac
695        
696  done  done
 echo  
697    
698  if test "x$MAKEFILE" = x ; then  if test -f ./.genmakerc ; then
699      MAKEFILE="Makefile"      echo
700  fi      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
701  if test "x${PLATFORM}" = x ; then      echo "  file.  This file format is no longer supported.  Please see:"
702      PLATFORM=$p_PLATFORM      echo
703        echo "    http://mitgcm.org/devel_HOWTO/"
704        echo
705        echo "  for directions on how to setup and use the new \"genmake2\" input"
706        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
707        echo
708  fi  fi
709    
710  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
# Line 414  if test ! -d ${ROOTDIR} ; then Line 732  if test ! -d ${ROOTDIR} ; then
732      exit 1      exit 1
733  fi  fi
734    
735    echo "  getting OPTFILE information:  "
736    if test "x${OPTFILE}" = x ; then
737        if test "x$MITGCM_OF" = x ; then
738            echo "Warning: no OPTFILE specified so we'll look for possible settings"
739            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
740            find_possible_configs
741        else
742            OPTFILE=$MITGCM_OF
743        fi
744    fi
745    if test "x$OPTFILE" != xNONE ; then
746        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
747            echo "    using OPTFILE=\"$OPTFILE\""
748            . "$OPTFILE"
749            RETVAL=$?
750            if test "x$RETVAL" != x0 ; then
751                echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
752                echo "--please check that variable syntax is bash-compatible"
753                exit 1
754            fi
755            if test "x$DUMPSTATE" != xf ; then
756                cp -f $OPTFILE "genmake_optfile"
757            fi
758        else
759            echo "Error: can't read OPTFILE=\"$OPTFILE\""
760            exit 1
761        fi
762    fi
763    
764    echo "  getting AD_OPTFILE information:  "
765    if test "x${AD_OPTFILE}" = x ; then
766        if test "x$MITGCM_AD_OF" = x ; then
767            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
768        else
769            AD_OPTFILE=$MITGCM_AD_OF
770        fi
771    fi
772    if test "x${AD_OPTFILE}" != xNONE ; then
773        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
774            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
775            . "$AD_OPTFILE"
776            RETVAL=$?
777            if test "x$RETVAL" != x0 ; then
778                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
779                echo "--please check that variable syntax is bash-compatible"
780                exit 1
781            fi
782            if test "x$DUMPSTATE" != xf ; then
783                cp -f $AD_OPTFILE "genmake_ad_optfile"
784            fi
785        else
786            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
787            exit 1
788        fi
789    fi
790    
791    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
792    #  either set defaults or complain and abort!
793    if test "x$FC" = x ; then
794        cat <<EOF 1>&2
795    
796    Error: no Fortran compiler: please specify using one of the following:
797      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
798      2) the "-fc=XXX" command-line option
799      3) the "./genmake_local" file
800    EOF
801        exit 1
802    fi
803    if test "x$LINK" = x ; then
804        LINK=$FC
805    fi
806    if test "x$CPP" = x ; then
807        CPP="cpp"
808    fi
809    if test "x$MAKE" = x ; then
810        MAKE="make"
811    fi
812    echo "#define A a" | $CPP > test_cpp 2>&1
813    RETVAL=$?
814    if test "x$RETVAL" != x0 ; then
815        cat <<EOF 1>&2
816    
817    Error: C pre-processor "$CPP" failed the test case: please specify using:
818    
819      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
820      2) the "./genmake_local" file
821      3) with the CPP environment variable
822    
823    EOF
824        exit 1
825    else
826        rm -f test_cpp
827    fi
828    if test "x$MAKEDEPEND" = x ; then
829        MAKEDEPEND=makedepend
830    fi
831    if test "x$LN" = x ; then
832        LN="ln -s"
833    fi
834    echo "test" > genmake_test_ln
835    $LN genmake_test_ln genmake_tlink
836    RETVAL=$?
837    if test "x$RETVAL" != x0 ; then
838        cat <<EOF 1>&2
839    
840    Error: The command "ln -s" failed -- please specify a working soft-link
841      command in the optfile.
842    
843    EOF
844        exit 1
845    fi
846    rm -f genmake_test_ln genmake_tlink
847    
848    
849    printf "\n===  Checking system libraries  ===\n"
850    echo -n "  Do we have the system() command using $FC...  "
851    cat > genmake_tcomp.f <<EOF
852          program hello
853          call system('echo hi')
854          end
855    EOF
856    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
857    RETVAL=$?
858    if test "x$RETVAL" = x0 ; then
859        HAVE_SYSTEM=t
860        DEFINES="$DEFINES -DHAVE_SYSTEM"
861        echo "yes"
862    else
863        HAVE_SYSTEM=
864        echo "no"
865    fi
866    rm -f genmake_tcomp*
867    
868    echo -n "  Do we have the fdate() command using $FC...  "
869    cat > genmake_tcomp.f <<EOF
870          program hello
871          CHARACTER(128) string
872          string = ' '
873          call fdate( string )
874          print *, string
875          end
876    EOF
877    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
878    RETVAL=$?
879    if test "x$RETVAL" = x0 ; then
880        HAVE_FDATE=t
881        DEFINES="$DEFINES -DHAVE_FDATE"
882        echo "yes"
883    else
884        HAVE_FDATE=
885        echo "no"
886    fi
887    rm -f genmake_tcomp*
888    
889    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
890    check_HAVE_CLOC
891    if test "x$HAVE_CLOC" != x ; then
892        echo "yes"
893    else
894        echo "no"
895    fi
896    rm -f genmake_t*
897    
898    
899    printf "\n===  Setting defaults  ===\n"
900    echo -n "  Adding MODS directories:  "
901    for d in $MODS ; do
902        if test ! -d $d ; then
903            echo
904            echo "Error: MODS directory \"$d\" not found!"
905            exit 1
906        else
907            echo -n " $d"
908            SOURCEDIRS="$SOURCEDIRS $d"
909            INCLUDEDIRS="$INCLUDEDIRS $d"
910        fi
911    done
912    echo
913    
914    if test "x$MAKEFILE" = x ; then
915        MAKEFILE="Makefile"
916    fi
917    if test "x${PLATFORM}" = x ; then
918        PLATFORM=$p_PLATFORM
919    fi
920    
921  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
922      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then
923          EXEDIR=../exe          EXEDIR=../exe
# Line 433  if test ! -d ${TOOLSDIR} ; then Line 937  if test ! -d ${TOOLSDIR} ; then
937      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"
938      exit 1      exit 1
939  fi  fi
940    if test "x$S64" = x ; then
941        S64='$(TOOLSDIR)/set64bitConst.sh'
942    fi
943    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
944    
945  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
946    
# Line 441  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 949  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
949  #  they appear as regular source code  #  they appear as regular source code
950  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
951      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
952      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
953      RETVAL=$?      RETVAL=$?
954      if test "x${RETVAL}" == "x0" ; then      if test "x${RETVAL}" = x0 ; then
955          rm -f make_eesupp.errors          rm -f make_eesupp.errors
956      else      else
957          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
# Line 452  if test -r $ROOTDIR"/eesupp/src/Makefile Line 960  if test -r $ROOTDIR"/eesupp/src/Makefile
960      fi      fi
961  fi  fi
962    
963  echo $'\n'"===  Determining package settings  ==="  printf "\n===  Determining package settings  ===\n"
964  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
965      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
966      if test -r $tmp ; then      if test -r $tmp ; then
# Line 471  echo "  getting package dependency info Line 979  echo "  getting package dependency info
979  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
980  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
981  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
982      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
983      > ./.pd_tmp      > ./.pd_tmp
984  RETVAL=$?  RETVAL=$?
985  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
986      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
987      exit 1      exit 1
988  fi  fi
989  source ./.pd_tmp  . ./.pd_tmp
990  rm -f ./.pd_tmp  rm -f ./.pd_tmp
991    
992  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
993    #  file should eventually be added so that, for convenience, one can
994    #  specify groups of packages using names like "ocean" and "atmosphere".
995    echo "  checking default package list:  "
996    if test "x${PDEFAULT}" = x ; then
997        for i in "." $MODS ; do
998            if test -r $i"/packages.conf" ; then
999                    PDEFAULT=$i"/packages.conf"
1000                    break
1001            fi
1002        done
1003    fi
1004  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1005      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1006  fi  fi
1007  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1008      echo "default packages file disabled"      echo "    default packages file disabled"
1009  else  else
1010      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1011          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1012      else      else
1013          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1014          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1015          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1016          RETVAL=$?          RETVAL=$?
1017          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1018              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 504  else Line 1022  else
1022          for i in $def ; do          for i in $def ; do
1023              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1024          done          done
1025          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1026            expand_pkg_groups
1027            echo "    after group expansion packages are:  $PACKAGES"
1028      fi      fi
1029  fi  fi
1030    
# Line 523  for p in $PACKAGES ; do Line 1043  for p in $PACKAGES ; do
1043  done  done
1044  PACKAGES="$pack"  PACKAGES="$pack"
1045  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1046  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1047  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1048  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1049      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 544  echo "  applying package dependency rule Line 1064  echo "  applying package dependency rule
1064  ck=  ck=
1065  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
1066      i=0      i=0
1067      rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
1068        rtot=$nname
1069      while test $i -lt $rtot ; do      while test $i -lt $rtot ; do
1070    
1071          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
1072          pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
1073            tmp="pname=\"\$PNAME_$i\""
1074            eval $tmp
1075          pin="f"          pin="f"
1076          for p in $PACKAGES ; do          for p in $PACKAGES ; do
1077              if test "x$p" = "x$pname" ; then              if test "x$p" = "x$pname" ; then
# Line 557  while test "x$ck" != xtt ; do Line 1080  while test "x$ck" != xtt ; do
1080          done          done
1081    
1082          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
1083            tmp="dname=\"\$DNAME_$i\""
1084            eval $tmp
1085          plus="-"          plus="-"
1086          echo "${DNAME[$i]}" | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
1087          RETVAL=$?          RETVAL=$?
1088          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then
1089              plus="+"              plus="+"
1090          fi          fi
1091    
1092          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
1093          dname=`echo ${DNAME[$i]} | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[+-]//'`
1094          din="f"          din="f"
1095          for p in $PACKAGES ; do          for p in $PACKAGES ; do
1096              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 609  for i in $PACKAGES ; do Line 1134  for i in $PACKAGES ; do
1134      if test -d $adr ; then      if test -d $adr ; then
1135          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1136          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1137            if test "x$i" = xautodiff ; then
1138                AUTODIFF_PKG_USED=t
1139            fi
1140      else      else
1141          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1142          exit 1          exit 1
1143      fi      fi
1144  done  done
1145    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths=". $SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1146    
1147  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1148  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1149  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1150  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1151  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1152  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1153  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1154  all_pack=  all_pack=
1155    DISABLED_PACKAGES=
1156  for n in $names ; do  for n in $names ; do
1157      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1158          has_pack="f"          has_pack="f"
# Line 686  for n in $names ; do Line 1163  for n in $names ; do
1163              fi              fi
1164          done          done
1165          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1166              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1167              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1168          fi          fi
1169      fi      fi
1170  done  done
1171  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1172  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1173      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1174      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1175    #eh3 DEFINES="$DEFINES -D$def"
1176    
1177  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1178      case $i in      case $i in
1179          aim_v23)          aim_v23)
1180              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              DEFINES="$DEFINES -DALLOW_AIM"
1181                ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1182                echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"
1183              ;;              ;;
1184      esac      esac
1185  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1186    
1187  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1188    
1189  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1190  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1191  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = x ; then
1192        STANDARDDIRS="eesupp model"
1193    fi
1194  for d in $STANDARDDIRS ; do  for d in $STANDARDDIRS ; do
1195      adr="$ROOTDIR/$d/src"      adr="$ROOTDIR/$d/src"
1196      if test ! -d $adr ; then      if test ! -d $adr ; then
# Line 750  for d in $STANDARDDIRS ; do Line 1210  for d in $STANDARDDIRS ; do
1210      fi      fi
1211  done  done
1212    
1213    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1214    echo "    of \"#define \"-type statements that are no longer allowed:"
1215    CPP_OPTIONS=
1216    CPP_EEOPTIONS=
1217    spaths=". $INCLUDEDIRS"
1218    names=`ls -1 "$ROOTDIR/pkg"`
1219    for i in $spaths ; do
1220        try="$i/CPP_OPTIONS.h"
1221        if test -f $try -a -r $try -a "x$CPP_OPTIONS" == x ; then
1222            echo "    found CPP_OPTIONS=\"$try\""
1223            CPP_OPTIONS="$try"
1224            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1225            for n in $names ; do
1226                test_for_package_in_cpp_options $CPP_OPTIONS $n
1227            done
1228        fi
1229        try="$i/CPP_EEOPTIONS.h"
1230        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" == x ; then
1231            echo "    found CPP_EEOPTIONS=\"$try\""
1232            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1233    #**** not yet enabled ****
1234    #        test_for_mpi_in_cpp_eeoptions $try
1235    #**** not yet enabled ****
1236            CPP_EEOPTIONS="$try"
1237        fi
1238    done
1239    if test "x$CPP_OPTIONS" = x ; then
1240        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1241        exit 1
1242    fi
1243    
1244  echo $'\n'"===  Creating the Makefile  ==="  #  Here, we build the list of files to be "run through" the adjoint
1245    #  compiler.
1246    if test -f ./ad_files ; then
1247        rm -f ./ad_files
1248    fi
1249    echo "  Creating the list of files for the adjoint compiler."
1250    for i in $SOURCEDIRS ; do
1251        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1252        for j in $list_files ; do
1253            cat $i/$j >> ad_files
1254        done
1255    done
1256    
1257    echo
1258    echo "===  Creating the Makefile  ==="
1259  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1260  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1261      if test -d $i ; then      if ! test -d $i ; then
1262          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1263      else  #   else
1264          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1265      fi      fi
1266  done  done
# Line 766  rm -rf .links.tmp Line 1270  rm -rf .links.tmp
1270  mkdir .links.tmp  mkdir .links.tmp
1271  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1272  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1273  echo -n 'SRCFILES = ' > srclist.inc  echo -n 'SRCFILES = '    > srclist.inc
1274  echo -n 'CSRCFILES = ' > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1275    echo -n 'F90SRCFILES = ' > f90srclist.inc
1276  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1277  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1278    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1279  for d in $alldirs ; do  for d in $alldirs ; do
1280      deplist=      deplist=
1281      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1282        sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1283      for sf in $sfiles ; do      for sf in $sfiles ; do
1284          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1285              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1286                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1287                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1288                  deplist="$deplist $sf"                          ;;
1289                      ./AD_CONFIG.h)
1290                            ;;
1291                      ./FC_NAMEMANGLE.h)
1292                            ;;
1293                      *)
1294                            touch .links.tmp/$sf
1295                            deplist="$deplist $sf"
1296                            ;;
1297                    esac
1298                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1299                  case $extn in                  case $extn in
1300                      F)                      F)
1301                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1302                          echo -n " $sf" >> srclist.inc                          echo -n " $sf" >> srclist.inc
1303                          ;;                          ;;
1304                        F90)
1305                            echo    " \\"  >> f90srclist.inc
1306                            echo -n " $sf" >> f90srclist.inc
1307                            ;;
1308                      c)                      c)
1309                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1310                          echo -n " $sf" >> csrclist.inc                          echo -n " $sf" >> csrclist.inc
# Line 792  for d in $alldirs ; do Line 1313  for d in $alldirs ; do
1313                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1314                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1315                          ;;                          ;;
1316                        flow)
1317                            echo    " \\"  >> ad_flow_files.inc
1318                            echo -n " $sf" >> ad_flow_files.inc
1319                            ;;
1320                  esac                  esac
1321              fi              fi
1322          fi          fi
1323      done      done
1324      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
1325          echo $'\n'"#  These files are linked from $d" >> srclinks.tmp          echo "" >> srclinks.tmp
1326            echo "#  These files are linked from $d" >> srclinks.tmp
1327          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
1328          echo $'\t$(LN) '$d'/$@ $@' >> srclinks.tmp          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp
1329      fi      fi
1330  done  done
1331  rm -rf .links.tmp  rm -rf .links.tmp
1332  echo "" >> srclist.inc  echo "" >> srclist.inc
1333  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1334    echo "" >> f90srclist.inc
1335  echo "" >> hlist.inc  echo "" >> hlist.inc
1336    echo "" >> ad_flow_files.inc
1337    
1338  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1339      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 819  echo "# by the command:" >> $MAKEFILE Line 1347  echo "# by the command:" >> $MAKEFILE
1347  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1348  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1349  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1350    
1351    EXE_AD=$EXECUTABLE"_ad"
1352    EXE_FTL=$EXECUTABLE"_ftl"
1353    EXE_SVD=$EXECUTABLE"_svd"
1354    
1355  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1356    #
1357    # OPTFILE="$OPTFILE"
1358  #  #
1359  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1360  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 847  EXEDIR      = ${EXEDIR} Line 1382  EXEDIR      = ${EXEDIR}
1382  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1383  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1384    
1385    #eh3  new defines for the adjoint work
1386    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1387    EXE_AD      = ${EXE_AD}
1388    EXE_FTL     = ${EXE_FTL}
1389    EXE_SVD     = ${EXE_SVD}
1390    
1391    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1392    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1393    
1394    # These files are created by Makefile
1395    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1396    
1397  EOF  EOF
1398    
1399  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 862  MAKEDEPEND = ${MAKEDEPEND} Line 1409  MAKEDEPEND = ${MAKEDEPEND}
1409  KPP = ${KPP}  KPP = ${KPP}
1410  # Fortran compiler  # Fortran compiler
1411  FC = ${FC}  FC = ${FC}
1412    # Fortran compiler
1413    F90C = ${F90C}
1414  # Link editor  # Link editor
1415  LINK = ${LINK}  LINK = ${LINK}
1416    
# Line 875  KFLAGS2 = ${KFLAGS2} Line 1424  KFLAGS2 = ${KFLAGS2}
1424  # Optim./debug for FC  # Optim./debug for FC
1425  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
1426  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
1427    # Optim./debug for FC
1428    F90FLAGS = ${F90FLAGS}
1429    F90OPTIM = ${F90OPTIM}
1430  # Flags for CC  # Flags for CC
1431  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
1432  # Files that should not be optimized  # Files that should not be optimized
# Line 882  NOOPTFILES = ${NOOPTFILES} Line 1434  NOOPTFILES = ${NOOPTFILES}
1434  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
1435  # Flags and libraries needed for linking  # Flags and libraries needed for linking
1436  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS} \$(XLIBS)
1437    # Name of the Mekfile
1438    MAKEFILE=${MAKEFILE}
1439    
1440  EOF  EOF
1441    
1442  cat srclist.inc  >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1443  cat csrclist.inc >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1444  cat hlist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1445  echo 'F77FILES =  $(SRCFILES:.F=.f)'                    >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1446  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o)' >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
1447    echo               >> $MAKEFILE
1448    echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1449    echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1450    echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1451    
1452  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1453    rm -f ad_flow_files.inc
1454    
1455  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1456    
1457  .SUFFIXES:  .SUFFIXES:
1458  .SUFFIXES: .o .f .p .F .c  .SUFFIXES: .o .f .p .F .c .F90 .f90
1459    
1460  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1461  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1462            @echo Creating \$@ ...
1463          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1464  depend:  depend:
1465          @make links          @make links
1466          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1467            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1468    
1469  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1470    
1471  small_f: \$(F77FILES)  small_f: \$(F77FILES) \$(F90FILES)
1472    
1473  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
1474          @printf 'running ... '          @printf 'running ... '
1475          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1476    
1477  clean:  clean:
1478          -rm -rf *.o *.f *.p ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1479  Clean:  Clean:
1480          @make clean          @make clean
1481          @make cleanlinks          @make cleanlinks
1482          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
1483            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1484  CLEAN:  CLEAN:
1485          @make Clean          @make Clean
1486          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1487          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1488          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1489          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1490    
1491    #eh3 Makefile: makefile
1492  makefile:  makefile:
1493          ${0} $@          $THIS_SCRIPT $@
1494  cleanlinks:  cleanlinks:
1495          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1496    
1497    # Special targets ($SPECIAL_FILES) which are create by make
1498    ${PACKAGES_DOT_H}:
1499            @echo Creating \$@ ...
1500            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1501    AD_CONFIG.h:
1502            @echo Creating \$@ ...
1503            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1504    FC_NAMEMANGLE.h:
1505            @echo Creating \$@ ...
1506            echo "$FC_NAMEMANGLE" > \$@
1507    
1508  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1509  .F.f:  .F.f:
1510          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1511  .f.o:  .f.o:
1512          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
1513    .F90.f90:
1514            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
1515    .f90.o:
1516            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
1517  .c.o:  .c.o:
1518          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
1519    
# Line 945  cleanlinks: Line 1523  cleanlinks:
1523  .p.f:  .p.f:
1524          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1525    
1526    #=========================================
1527    #===  Automatic Differentiation Rules  ===
1528    
1529    TAMC           = ${TAMC}
1530    TAF            = ${TAF}
1531    
1532    TAF_EXTRA      = ${TAF_EXTRA}
1533    TAMC_EXTRA     = ${TAMC_EXTRA}
1534    
1535    EOF
1536    
1537    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1538    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1539    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1540    for i in $ad_vars ; do
1541        name=$i
1542        t1="t2=\$"`echo $i`
1543        eval $t1
1544        printf "%-20s = " $name >> $MAKEFILE
1545        echo $t2 >> $MAKEFILE
1546    done
1547    
1548    echo "  Add the source list for AD code generation"
1549    echo >> $MAKEFILE
1550    echo -n "AD_FILES = " >> $MAKEFILE
1551    AD_FILES=`cat ad_files`
1552    for i in $AD_FILES ; do
1553        echo    " \\" >> $MAKEFILE
1554        echo -n " $i" >> $MAKEFILE
1555    done
1556    echo >> $MAKEFILE
1557    rm -f ad_files
1558    
1559    cat >>$MAKEFILE <<EOF
1560    
1561    # ... AD ...
1562    adall: ad_taf
1563    adtaf: ad_taf_output.f
1564    adtamc: ad_tamc_output.f
1565    
1566    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1567            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1568            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1569            -rm -f ad_config.template
1570            @make \$(F77FILES)
1571            @make \$(AD_FLOW_FILES)
1572            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1573    
1574    ad_taf_output.f: ad_input_code.f
1575            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1576            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1577    
1578    adtafonly:
1579            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1580            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1581    
1582    ad_taf: ad_taf_output.o \$(OBJFILES)
1583            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1584    
1585    ad_tamc_output.f: ad_input_code.f
1586            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1587            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1588    
1589    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1590            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1591    
1592    
1593    # ... FTL ...
1594    ftlall: ftl_taf
1595    ftltaf: ftl_taf_output.f
1596    ftltamc: ftl_tamc_output.f
1597    
1598    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1599            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1600            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1601            -rm -f ftl_config.template
1602            @make \$(F77FILES)
1603            @make \$(AD_FLOW_FILES)
1604            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1605    
1606    ftl_taf_output.f: ftl_input_code.f
1607            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1608            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1609    
1610    ftltafonly:
1611            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1612            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1613    
1614    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1615            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1616    
1617    ftl_tamc_output.f: ftl_input_code.f
1618            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1619            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1620    
1621    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1622            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1623    
1624    
1625    # ... SVD ...
1626    svdtaf: ad_taf_output.f ftl_taf_output.f
1627    svdall: svd_taf
1628    
1629    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1630            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1631    
1632    
1633    #=========================================
1634    
1635  EOF  EOF
1636    
1637    if test "x$EXEHOOK" != x ; then
1638        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
1639    fi
1640    
1641  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
1642  for i in $KPPFILES ; do  for i in $KPPFILES ; do
1643      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 965  for i in $NOOPTFILES ; do Line 1656  for i in $NOOPTFILES ; do
1656          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
1657      fi      fi
1658      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.f" >> $MAKEFILE
1659      echo $'\t$(FC) $(FFLAGS) $(NOOPTFLAGS) -c $<' >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
1660  done  done
1661    
1662  echo "  Add rules for links"  echo "  Add rules for links"
# Line 973  cat srclinks.tmp >> $MAKEFILE Line 1664  cat srclinks.tmp >> $MAKEFILE
1664  rm -f srclinks.tmp  rm -f srclinks.tmp
1665    
1666  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
1667  echo $'\n\n'"# DO NOT DELETE" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
1668    
1669    printf "\n===  Done  ===\n"
1670    
1671    # Create special header files
1672    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1673    if test ! -f $PACKAGES_DOT_H ; then
1674        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1675    else
1676        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1677        RETVAL=$?
1678        if test "x$RETVAL" = x0 ; then
1679            rm -f $PACKAGES_DOT_H".tmp"
1680        else
1681            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1682            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1683        fi
1684    fi
1685    if test ! -f AD_CONFIG.h ; then
1686        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1687    fi
1688    
1689  echo $'\n'"===  Done  ==="  
1690    #  Write the "state" for future records
1691    if test "x$DUMPSTATE" != xf ; then
1692        echo -n "" > genmake_state
1693        for i in $gm_state ; do
1694            t1="t2=\$$i"
1695            eval $t1
1696            echo "$i='$t2'" >> genmake_state
1697        done
1698    fi

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