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revision 1.49 by edhill, Tue Nov 25 17:22:47 2003 UTC revision 1.278 by jmc, Fri Jan 15 22:08:17 2016 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -optfile NAME | --optfile NAME | -of NAME | --of NAME
36          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
37              Use "NAME" as the optfile.  By default, an attempt will be
38              made to find an appropriate "standard" optfile in the
39              tools/build_options/ directory.
40    
41        -pdepend NAME | --pdepend NAME
42          -pdepend=NAME | --pdepend=NAME
43              Get package dependency information from "NAME".
44    
45        -pgroups NAME | --pgroups NAME
46          -pgroups=NAME | --pgroups=NAME
47              Get the package groups information from "NAME".
48    
49        -bash NAME
50              Explicitly specify the Bourne or BASH shell to use
51    
52        -make NAME | -m NAME
53          --make=NAME | -m=NAME
54              Use "NAME" for the MAKE program. The default is "make" but
55              many platforms, "gmake" is the preferred choice.
56    
57        -makefile NAME | -mf NAME
58          --makefile=NAME | -mf=NAME
59              Call the makefile "NAME".  The default is "Makefile".
60    
61        -makedepend NAME | -md NAME
62          --makedepend=NAME | -md=NAME
63              Use "NAME" for the MAKEDEPEND program.
64    
65        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
66          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
67              Specify the location of the MITgcm ROOTDIR as "NAME".
68              By default, genamke will try to find the location by
69              looking in parent directories (up to the 5th parent).
70    
71        -mods NAME | --mods NAME | -mo NAME | --mo NAME
72          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
73              Here, "NAME" specifies a list of directories that are
74              used for additional source code.  Files found in the
75              "mods list" are given preference over files of the same
76              name found elsewhere.
77    
78        -disable NAME | --disable NAME
79          -disable=NAME | --disable=NAME
80              Here "NAME" specifies a list of packages that we don't
81              want to use.  If this violates package dependencies,
82              genamke will exit with an error message.
83    
84        -enable NAME | --enable NAME
85          -enable=NAME | --enable=NAME
86              Here "NAME" specifies a list of packages that we wish
87              to specifically enable.  If this violates package
88              dependencies, genamke will exit with an error message.
89    
90        -standarddirs NAME | --standarddirs NAME
91          -standarddirs=NAME | --standarddirs=NAME
92              Here, "NAME" specifies a list of directories to be
93              used as the "standard" code.
94    
95        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
96          -fc=NAME | --fc=NAME
97              Use "NAME" as the fortran compiler.  By default, genmake
98              will search for a working compiler by trying a list of
99              "usual suspects" such as g77, f77, etc.
100    
101        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
102              Use "NAME" as the C compiler.  By default, genmake
103              will search for a working compiler by trying a list of
104              "usual suspects" such as gcc, c89, cc, etc.
105    
106        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
107              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
108              *only* works if CPP_EEOPTIONS.h allows this.
109    
110        -ignoretime | -ignore_time | --ignoretime | --ignore_time
111              Ignore all the "wall clock" routines entirely.  This will
112              not in any way hurt the model results -- it simply means
113              that the code that checks how long the model spends in
114              various routines will give junk values.
115    
116        -ts | --ts
117              Produce timing information per timestep
118        -papis | --papis
119              Produce summary MFlop/s (and IPC) with PAPI per timestep
120        -pcls | --pcls
121              Produce summary MFlop/s etc. with PCL per timestep
122        -foolad | --foolad
123              Fool the AD code generator
124        -papi | --papi
125              Performance analysis with PAPI
126        -pcl | --pcl
127              Performance analysis with PCL
128        -hpmt | --hpmt
129              Performance analysis with the HPM Toolkit
130    
131        -ieee | --ieee
132              use IEEE numerics.  Note that this option *only* works
133              if it is supported by the OPTFILE that is being used.
134        -devel | --devel
135              Add additional warning and debugging flags for development
136              (if supported by the OPTFILE); also switch to IEEE numerics.
137        -gsl | --gsl
138              Use GSL to control floating point rounding and precision
139    
140        -mpi | --mpi
141              Include MPI header files and link to MPI libraries
142        -mpi=PATH | --mpi=PATH
143              Include MPI header files and link to MPI libraries using MPI_ROOT
144              set to PATH. i.e. Include files from \$PATH/include, link to libraries
145              from \$PATH/lib and use binaries from \$PATH/bin.
146    
147        -omp | --omp
148              Activate OpenMP code + use Compiler option OMPFLAG
149        -omp=OMPFLAG | --omp=OMPFLAG
150              Activate OpenMP code + use Compiler option OMPFLAG
151    
152        -es | --es | -embed-source | --embed-source
153              Embed a tarball containing the full source code
154              (including the Makefile, etc.) used to build the
155              executable [off by default]
156    
157        -ds | --ds
158              Report genmake internal variables status (DUMPSTATE)
159              to file "genmake_state" (for debug purpose)
160    
161      While it is most often a single word, the "NAME" variables specified
162      above can in many cases be a space-delimited string such as:
163    
164        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
165        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
166        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
167    
168      which, depending upon your shell, may need to be single-quoted.
169    
170      For more detailed genmake documentation, please see:
171    
172        http://mitgcm.org/public/devel_HOWTO/
173    
174    EOF
175    
176        exit 1
177    }
178    
179  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
180  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
181  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
182      cpp_options=$1      cpp_options=$1
183      pkg=$2      pkg=$2
184      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
185      RETVAL=$?      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
186      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
187          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
188          exit 99  }
189      fi  
190      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
191      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
192      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
193          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
194          exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
195      fi      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
196      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  }
197    
198    # Search for particular string in a file. Return 1 if detected, 0 if not
199    # usage: test_for_string_in_file file string
200    test_for_string_in_file() {
201        file=$1
202        strng=$2
203        grep "$strng" $file > /dev/null 2>&1
204      RETVAL=$?      RETVAL=$?
205      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
206          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
207            grep -i "$strng" $file
208          exit 99          exit 99
209      fi      fi
210      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
211  }  }
212    
213  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
214  # the package list.  # the package list.
215  expand_pkg_groups() {  expand_pkg_groups() {
216      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
217      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
218          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
219          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
220          matched=0          matched=0
221          for i in $PACKAGES ; do          for i in $PACKAGES ; do
222              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
223              RETVAL=$?              RETVAL=$?
224              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
225                  matched=1                  matched=1
226                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
227                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
228                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
229              else              else
230                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
231              fi              fi
232          done          done
233          PACKAGES=$new_packages          PACKAGES=$new_packages
234          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
235            return $matched
236      else      else
237          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
238      fi      fi
239  }  }
240    
241  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
242  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
243    check_for_broken_Ff()  {
244        #  Do we have defaults for $FS and/or $FS90 ?
245        tfs=f
246        tfs9=f90
247        if test "x$FS" != x ; then
248            tfs="$FS"
249        fi
250        if test "x$FS90" != x ; then
251            tfs9="$FS90"
252        fi
253    
254      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
255      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
256      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
257      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        write(*,*) 'hi'
258      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        stop
259      echo "  The platform appears to be:  $PLATFORM"        end
260        EOF
261      echo "test" > test      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
     ln -s ./test link  
262      RETVAL=$?      RETVAL=$?
263      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
264          LN="ln -s"          if test "x$FS" = x ; then
265      else              FS='for'
266          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
267          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
268          exit 1          else
269                cat <<EOF 2>&1
270    ERROR: Your file system cannot distinguish between *.F and *.f files
271      (fails the "cp" test) and this program cannot find a suitable
272      replacement extension.  Please try a different build environment or
273      contact the <MITgcm-support@mitgcm.org> list for help.
274    
275    EOF
276                exit -1
277            fi
278            return
279      fi      fi
280      rm -f test link      rm -f genmake_hello.*
281    
282      if test "x$CPP" = x ; then      #  Check the ability of ${MAKE} and ${LN} to use the current set
283          CPP="cpp -traditional -P"      #  of extensions.
284        cat <<EOF >> genmake_hello.F
285          program hello
286          write(*,*) 'hi'
287          stop
288          end
289    EOF
290        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
291        cat <<EOF >> $MAKEFILE
292    .SUFFIXES:
293    .SUFFIXES: .$tfs .F
294    .F.$tfs:
295            $LN \$< \$@
296    EOF
297        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
298        RETVAL=$?
299        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
300            if test "x$FS" = x ; then
301                FS='for'
302                FS90='fr9'
303                check_for_broken_Ff
304            else
305                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
306                echo "       see simple makefile: '$MAKEFILE' (left here)"
307                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
308                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
309                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
310                echo ""
311                exit -1
312                return
313            fi
314      fi      fi
315        rm -f genmake_hello.* $MAKEFILE
316        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
317    
318        #  If we make it here, use the extensions
319        FS=$tfs
320        FS90=$tfs9
321        return
322    }
323    
324      # makedepend is not always available  look_for_makedepend()  {
325    
326        #  The "original" makedepend is part of the Imake system that is
327        #  most often distributed with XFree86 or with an XFree86 source
328        #  package.  As a result, many machines (eg. generic Linux) do not
329        #  have a system-default "makedepend" available.  For those
330        #  systems, we have two fall-back options:
331        #
332        #    1) a makedepend implementation shipped with the cyrus-imapd
333        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
334        #    2) a local tools/xmakedepend shell script
335        #
336        #  So the choices are, in order:
337        #    1) use the user-specified program
338        #    2) use the local xmakedepend script (get all dependencies, but slower)
339        #    3) use a system-wide default
340        #    4) locally build and use the cyrus makedepend
341        #             (faster, but can miss some dependencies)
342        #
343        echo >> $LOGFILE
344        echo "running: look_for_makedepend()" >> $LOGFILE
345        if test "x${MAKEDEPEND}" != x ; then
346            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
347            RETVAL=$?
348            if test x"$RETVAL" = x0 ; then
349                build_cyrus_makedepend
350                RETVAL=$?
351                if test "x$RETVAL" != x0 ; then
352                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
353                    MAKEDEPEND=
354                fi
355            else
356                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
357                RETVAL=$?
358                if test "x$RETVAL" = x0 ; then
359                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
360                fi
361                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
362            fi
363        fi
364      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
365        which makedepend >& /dev/null          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
366        RETVAL=$?          #  echo 'MAKEFILE="'$MAKEFILE'"'
367        if test "x${RETVAL}" = x1 ; then          cat <<EOF >> $MAKEFILE
368           echo "    makedepend was not found. Using xmakedpend instead."  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
369           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'  #
370        fi  #   Some "makedepend" implementations will die if they cannot
371    #   find a Makefile -- so this file is here to gives them an
372    #   empty one to find and parse.
373    EOF
374            cat <<EOF >> genmake_tc.f
375          program test
376          write(*,*) 'test'
377          stop
378          end
379    EOF
380            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
381            RV1=$?
382            which makedepend > /dev/null 2>&1
383            RV2=$?
384            if test "x${RV2}" = x0 ; then
385                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
386                RV3=$? ; loc_msg='not working.'
387            else RV3=$RV2 ; loc_msg='not found.'
388            fi
389            test -f $MAKEFILE  &&  rm -f $MAKEFILE
390            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
392            if test "x${RV1}" = x0 ; then
393                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
394                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
395            elif test "x${RV3}" = x0 ; then
396                echo "    local tools/xmakedepend not working. Use system-default makedepend"
397                MAKEDEPEND=makedepend
398                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
399            else
400                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
401                echo -n "    Try to build cyrus-makedepend ..."
402                #  Try to build the cyrus implementation
403                build_cyrus_makedepend
404                RETVAL=$?
405                if test "x$RETVAL" = x0 ; then
406                    echo "  Works"
407                else
408                    echo "  Fails" ; echo "" >> $LOGFILE
409                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
410                    echo ""
411                    exit -1
412                    return
413                fi
414            fi
415      fi      fi
416    }
417    
418      # look for possible fortran compilers  build_cyrus_makedepend()  {
419      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
420      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
421        rm -f ./genmake_cy_md
422        (
423            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
424                &&  ./configure > /dev/null 2>&1  \
425                &&  $MAKE > /dev/null 2>&1
426            if test -x ./makedepend.exe ; then
427                $LN ./makedepend.exe ./makedepend
428            fi
429            ./makedepend ifparser.c > /dev/null 2>&1  \
430                &&  echo "true"
431        ) > ./genmake_cy_md
432        grep true ./genmake_cy_md > /dev/null 2>&1
433        RETVAL=$?
434        rm -f ./genmake_cy_md
435        if test "x$RETVAL" = x0 ; then
436            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
437            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
438            return 0
439        else
440            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
441            return 1
442        fi
443    }
444    
445    build_embed_encode()
446    {
447        printf "  building the embed-encode utility...  "
448        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
449            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
450                echo
451                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
452                echo
453                EMBED_SRC=f
454                return 1
455            fi
456            clist="cc gcc c89 $CC"
457            for ic in $clist ; do
458                comm="$ic -o encode_files encode_files.c"
459                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
460                RETVAL=$?
461                if test "x$RETVAL" = x0 ; then
462                    echo "OK"
463                    return 0
464                fi
465            done
466            echo
467            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
468            echo "      so it has been disabled"
469            echo
470            EMBED_SRC=f
471            return 1
472        fi
473        echo "OK"
474    }
475    
476    #  look for possible C compilers
477    look_for_C_compilers() {
478        echo >> $LOGFILE
479        echo "running: look_for_C_compilers()" >> $LOGFILE
480        rm -f ./genmake_hello.c  ./genmake_hello
481        cat >> genmake_hello.c << EOF
482    #include <stdio.h>
483    int main(int argc, char **argv) {
484      printf("Hello!\n");
485      return 0;
486    }
487    EOF
488        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
489        p_CC=
490      for c in $tmp ; do      for c in $tmp ; do
491          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
492          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
493            $COMM >> $LOGFILE 2>&1
494            RETVAL=$?
495            if test "x${RETVAL}" = x0 ; then
496                echo " $c test successful" >> $LOGFILE
497                p_CC="$p_CC $c"
498            fi
499        done
500        rm -f ./genmake_hello.c ./genmake_hello
501        if test "x${p_CC}" = x ; then
502            cat 1>&2 <<EOF
503    
504    Error: No C compilers were found in your path.  Please specify one using:
505    
506        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
507        2) the CC or MITGCM_CC environment variables.
508    
509    EOF
510            exit 1
511        else
512            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
513            if test "x$CC" = x ; then
514                CC=`echo $p_CC | $AWK '{print $1}'`
515                echo "  Setting C compiler to: "$CC
516            fi
517        fi
518        echo " --> set CC='$CC'" >> $LOGFILE
519    }
520    
521    # Guess possible config options for this host
522    find_possible_optfile()  {
523    
524        echo >> $LOGFILE
525        echo "running: find_possible_optfile()" >> $LOGFILE
526        tmp1=`uname`"_"`uname -m`
527        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
528        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
529        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
530        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
531        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
532        PLATFORM=$tmp3
533        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
534        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
535        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
536    
537        #================================================================
538        #  look for possible FORTRAN compilers
539        echo "  look for possible FORTRAN compilers" >> $LOGFILE
540        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
541        p_FC=
542        rm -f ./genmake_hello.f
543        cat >> genmake_hello.f <<EOF
544        program hello        program hello
545        do i=1,3        do i=1,3
546          print *, 'hello world : ', i          print *, 'hello world : ', i
547        enddo        enddo
548        end        end
549  EOF  EOF
550          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
551            COMM="$f -o genmake_hello genmake_hello.f"
552            echo $COMM >> $LOGFILE
553            $COMM >> $LOGFILE 2>&1
554          RETVAL=$?          RETVAL=$?
555          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
556              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
557                p_FC="$p_FC $f"
558          fi          fi
559      done      done
560      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
561      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
562          cat 1>&2 <<EOF          cat 1>&2 <<EOF
563    
# Line 129  Error: No Fortran compilers were found i Line 565  Error: No Fortran compilers were found i
565    
566      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
567      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
568      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
569    
570  EOF  EOF
571          exit 1          exit 1
572      else      else
573          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
574      fi      fi
575    
576      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
577          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
578          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
579              OPTFILE=$p_OF          for i in $p_FC ; do
580              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
581              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
582              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
583                    break
584                fi
585            done
586        fi
587    
588        if test "x$OPTFILE" = x ; then
589            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
590            if test ! -r $OPTFILE ; then
591                 echo "  I looked for the file "$OPTFILE" but did not find it"
592          fi          fi
593      done      fi
594    
595      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
596          cat 1>&2 <<EOF          cat 1>&2 <<EOF
597    
# Line 165  Error: No options file was found in:  $R Line 607  Error: No options file was found in:  $R
607  EOF  EOF
608          exit 1          exit 1
609      fi      fi
610        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
611    
612    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
613    #  checking for additional included headers (in case of chain of included header)
614    mpi_headers_do_local_copy() {
615    
616        dBug=0
617        rm -rf ./mpi_headers
618        if test -d $MPIINCLUDEDIR ; then
619    
620            #----- check for additional headers (chain of included headers)
621            echo -n '  Check MPI headers ... '
622            listIni=$MPI_HEADER_FILES
623            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
624            outp=$?
625            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
626            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
627            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
628    
629            doCheck=1 ; list2copy='' ; list2check=$listIni
630            while test $doCheck = 1 ; do
631              newList=''
632              for i in $list2check ; do
633                if test -f $MPIINCLUDEDIR/$i ; then
634                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
635                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
636                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
637                  for j in $newInc ; do
638                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
639                    outp=$?
640                    if test $outp != 0 ; then
641                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
642                      newList="$newList $j"
643                    fi
644                  done
645                  if test $dBug = 1 ; then echo "" ; fi
646                fi
647              done
648              if test "x$newList" = x ; then doCheck=0
649              else list2check=$newList ; list2copy="$list2copy $newList"
650              fi
651            done
652            list2copy="$MPI_HEADER_FILES $list2copy"
653            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
654    
655            #----- create local mpi_headers dir if we have files to copy
656            mkListInc=`echo $list2copy | wc -w`
657            if test $mkListInc != 0 ; then
658              echo 'create local "./mpi_headers" dir'
659              mkdir -p ./mpi_headers
660              INCLUDES="-I./mpi_headers $INCLUDES"
661              mkListInc=1
662            fi
663            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
664    
665            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
666            for i in $list2copy ; do
667              if test -f $MPIINCLUDEDIR/$i ; then
668                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
669                if test $i = 'mpif.h' ; then
670                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
671                fi
672                if test $mkListInc = 2 ; then
673                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
674                fi
675                if test $mkListInc = 1 ; then
676                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
677                fi
678              fi
679            done
680        else
681            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
682            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
683    #       exit -1
684        fi
685  }  }
686    
687  #  Parse the package dependency information  #  Parse the package dependency information
# Line 203  get_pdepend_list()  { Line 690  get_pdepend_list()  {
690      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
691      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
692      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
693          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
694          > ./.pd_tmp          > ./.pd_tmp
695        RETVAL=$?
696        if test ! "x${RETVAL}" = x0 ; then
697          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
698          exit 1
699        fi
700      . ./.pd_tmp      . ./.pd_tmp
701      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
702  }  }
703    
704  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
705  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
706    
707        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
708        if test ! "x$FC_NAMEMANGLE" = x ; then
709            return 0
710        fi
711        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
712    
713      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
714        
715      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
716  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
717  EOF  EOF
718      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
719        echo ' '$COMM >> $LOGFILE
720        $COMM >> $LOGFILE 2>&1
721      RETVAL=$?      RETVAL=$?
722      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
723          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
724          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
725    
726  WARNING: C test compile fails   WARNING: C test compile fails
727  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
728  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
729  EOF  EOF
730          return 1          return 1
731      fi      fi
732      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
733      RETVAL=$?      RETVAL=$?
734      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
735          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
736          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
737    
738  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
739  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
740  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
741  EOF  EOF
742          return 1          return 1
743      fi      fi
744      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
745        subroutine tcall( string )        subroutine tcall( string )
746        character*(*) string        character*(*) string
747        call tsub( string )        call tsub( string )
748        end        end
749  EOF  EOF
750      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
751        echo ' '$COMM >> $LOGFILE
752        $COMM >> $LOGFILE 2>&1
753      RETVAL=$?      RETVAL=$?
754      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
755          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
756          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
757    
758  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
759  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
760  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
761  EOF  EOF
762          return 1          return 1
763      fi      fi
764      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
765      RETVAL=$?      RETVAL=$?
766      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
767          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
768          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
769    
770     WARNING: The "nm" command failed.
771     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
772     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
773    EOF
774            return 1
775        fi
776    
777        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
778        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
779        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
780        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
781    
782        nmangle="X"
783        if test "x$c_a" != "x$f_a" ; then
784            comm="echo x$f_a | sed -e 's|x$c_a||'"
785            a=`eval $comm`
786            nmangle="$a ## $nmangle"
787        fi
788        if test "x$c_b" != "x$f_b" ; then
789            comm="echo x$f_b | sed -e 's|x$c_b||'"
790            b=`eval $comm`
791            nmangle="$nmangle ## $b"
792        fi
793    
794        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
795    
796        #  cleanup the testing files
797        rm -f genmake_tcomp.* genmake_test.*
798    
799        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
800    }
801    
802    check_HAVE_CLOC()  {
803        echo >> $LOGFILE
804        echo "running: check_HAVE_CLOC()" >> $LOGFILE
805        get_fortran_c_namemangling
806        cat <<EOF > genmake_tc_1.c
807    $FC_NAMEMANGLE
808    #include <stdio.h>
809    #include <stdlib.h>
810    #include <unistd.h>
811    #include <assert.h>
812    #include <sys/time.h>
813    void FC_NAMEMANGLE(cloc) ( double *curtim )
814    {
815     struct timeval tv1;
816     gettimeofday(&tv1 , (void *)NULL );
817     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
818     *curtim = *curtim/1.E6;
819    }
820    EOF
821        COMM="$CC $CFLAGS -c genmake_tc_1.c"
822        echo $COMM >> $LOGFILE
823        $COMM >> $LOGFILE 2>&1
824        RET_C=$?
825        cat <<EOF > genmake_tc_2.$FS
826          program hello
827          REAL*8 wtime
828          external cloc
829          call cloc(wtime)
830          print *," HELLO WORLD", wtime
831          end
832    EOF
833        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
834        echo $COMM >> $LOGFILE
835        $COMM >> $LOGFILE 2>&1
836        RET_F=$?
837        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
838        RETVAL=$?
839        if test "x$RETVAL" = x0 ; then
840            HAVE_CLOC=t
841        fi
842        rm -f genmake_tc*
843        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
844    }
845    
846    check_HAVE_SIGREG()  {
847        if test ! "x$HAVE_SIGREG" = x ; then
848            return
849        fi
850        echo >> $LOGFILE
851        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
852        get_fortran_c_namemangling
853        cat <<EOF > genmake_tc_1.c
854    $FC_NAMEMANGLE
855    #include <stdlib.h>
856    #include <stdio.h>
857    #include <signal.h>
858    #include <errno.h>
859    #include <ucontext.h>
860    
861    int * ip;
862    
863    static void killhandler(
864        unsigned int sn, siginfo_t  si, struct ucontext *sc )
865    {
866        *ip = *ip + 1;
867        return;
868    }
869    
870  WARNING: The "nm" command failed.  void FC_NAMEMANGLE(sigreg) (int * aip)
871  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'  {
872  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.      struct sigaction s;
873        ip = aip;
874        s.sa_flags = SA_SIGINFO;
875        s.sa_sigaction = (void *)killhandler;
876        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
877            printf("Sigaction returned error = %d\n", errno);
878            exit(0);
879        }
880        return;
881    }
882  EOF  EOF
883          return 1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
884        echo $COMM >> $LOGFILE
885        $COMM >> $LOGFILE 2>&1
886        RET_C=$?
887        cat <<EOF > genmake_tc_2.$FS
888          program hello
889          integer anint
890          common /iv/ anint
891          external sigreg
892          call sigreg(anint)
893          end
894    EOF
895        cat genmake_tc_2.$FS >> $LOGFILE
896        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
897        echo $COMM >> $LOGFILE
898        $COMM >> $LOGFILE 2>&1
899        RETVAL=$?
900        if test "x$RETVAL" = x0 ; then
901            HAVE_SIGREG=t
902      fi      fi
903        rm -f genmake_tc*
904        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
905    }
906    
907      c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`  check_HAVE_SETRLSTK()  {
908      f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`      if test ! "x$HAVE_SETRLSTK" = x ; then
909      c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`          return
     f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`  
   
     nmangle="X"  
     if test "x$c_a" != "x$f_a" ; then  
         comm="echo x$f_a | sed -e 's|x$c_a||'"  
         a=`eval $comm`  
         nmangle="$a ## $nmangle"  
910      fi      fi
911      if test "x$c_b" != "x$f_b" ; then      echo >> $LOGFILE
912          comm="echo x$f_b | sed -e 's|x$c_b||'"      echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
913          b=`eval $comm`      get_fortran_c_namemangling
914          nmangle="$nmangle ## $b"      cat <<EOF > genmake_tc_1.c
915    $FC_NAMEMANGLE
916    #include <sys/time.h>
917    #include <sys/resource.h>
918    #include <unistd.h>
919    void FC_NAMEMANGLE(setrlstk) ()
920    {
921        struct rlimit rls;
922        rls.rlim_cur = RLIM_INFINITY;
923        rls.rlim_max = RLIM_INFINITY;
924        setrlimit(RLIMIT_STACK, &rls);
925        return;
926    }
927    EOF
928        COMM="$CC $CFLAGS -c genmake_tc_1.c"
929        echo $COMM >> $LOGFILE
930        $COMM >> $LOGFILE 2>&1
931        RET_C=$?
932        cat <<EOF > genmake_tc_2.$FS
933          program hello
934          external setrlstk
935          call setrlstk()
936          end
937    EOF
938        cat genmake_tc_2.$FS >> $LOGFILE
939        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
940        echo $COMM >> $LOGFILE
941        $COMM >> $LOGFILE 2>&1
942        RETVAL=$?
943        if test "x$RETVAL" = x0 ; then
944            HAVE_SETRLSTK=t
945      fi      fi
946        rm -f genmake_tc*
947      FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"      echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
   
     #  cleanup the testing files  
     rm -f genmake_tcomp.* genmake_test.*  
948  }  }
949    
950    check_HAVE_STAT()  {
951  check_HAVE_CLOC()  {      echo >> $LOGFILE
952        echo "running: check_HAVE_STAT()" >> $LOGFILE
953      get_fortran_c_namemangling      get_fortran_c_namemangling
954      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
955  $FC_NAMEMANGLE  $FC_NAMEMANGLE
956  #include <stdio.h>  #include <stdio.h>
957  #include <stdlib.h>  #include <stdlib.h>
958  #include <unistd.h>  #include <unistd.h>
959  #include <assert.h>  #include <sys/stat.h>
960  #include <sys/time.h>  #include <sys/types.h>
961  void FC_NAMEMANGLE(cloc) ( double *curtim )  void FC_NAMEMANGLE(tfsize) ( int *nbyte )
962  {  {
963   struct timeval tv1;      char name[512];
964   gettimeofday(&tv1 , (void *)NULL );      struct stat astat;
965   *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);  
966   *curtim = *curtim/1.E6;      name[0] = 'a'; name[1] = '\0';
967        if (! stat(name, &astat))
968            *nbyte = (int)(astat.st_size);
969        else
970            *nbyte = -1;
971  }  }
972  EOF  EOF
973      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
974        echo $COMM >> $LOGFILE
975        $COMM >> genmake_tc.log 2>&1
976      RET_C=$?      RET_C=$?
977      cat <<EOF > genmake_tc_2.f      cat <<EOF > genmake_tc_2.$FS
978        program hello        program hello
979        Real*8 wtime        integer nbyte
980        external cloc        call tfsize(nbyte)
981        call cloc(wtime)        print *," HELLO WORLD", nbyte
982        print *," HELLO WORLD", wtime        end
       end program hello  
983  EOF  EOF
984      $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1      cat genmake_tc_2.$FS >> $LOGFILE
985      RET_F=$?      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
986      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1      echo $COMM >> $LOGFILE
987        $COMM >> genmake_tc.log 2>&1
988      RETVAL=$?      RETVAL=$?
989      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
990          HAVE_CLOC=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
991      fi      fi
992      rm -f genmake_tc*      rm -f genmake_tc*
993        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
994  }  }
995    
996    check_netcdf_libs()  {
997        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
998            return
999        fi
1000        echo >> $LOGFILE
1001        echo "running: check_netcdf_libs()" >> $LOGFILE
1002        cat <<EOF > genmake_tnc.F
1003          program fgennc
1004    #include "netcdf.inc"
1005    EOF
1006       #if test ! "x$MPI" = x ; then
1007       #    echo '#include "mpif.h"' >> genmake_tnc.F
1008       #fi
1009        cat <<EOF >> genmake_tnc.F
1010          integer iret, ncid, xid
1011          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1012          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1013          iret = nf_def_dim(ncid, 'X', 11, xid)
1014          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1015          iret = nf_close(ncid)
1016          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1017          end
1018    EOF
1019        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1020        cat genmake_tnc.F >> genmake_tnc.log
1021        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1022        RET_CPP=f
1023        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1024        echo "$COMM" >> genmake_tnc.log
1025        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1026        if test "x$RET_CPP" = xf ; then
1027            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1028                >> genmake_tnc.log
1029            echo "    Please check that \$INCLUDES is properly set." \
1030                >> genmake_tnc.log
1031        fi
1032        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1033        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1034        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1035            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1036        RET_COMPILE=$?
1037        cat genmake_tnc.log >> $LOGFILE
1038    
1039        #EH3  Remove test program execution for machines that either disallow
1040        #EH3  execution or cannot support it (eg. cross-compilers)
1041        #EH3
1042        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1043        #EH3 RETVAL=$?
1044        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1045    
1046        if test "x$RET_COMPILE" = x0 ; then
1047            HAVE_NETCDF=t
1048            echo "check_netcdf: successful" >> $LOGFILE
1049        else
1050            # try again with "-lnetcdf" added to the libs
1051            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1052            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1053            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1054            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1055            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1056                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1057                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1058            RET_COMPILE=$?
1059            echo >> $LOGFILE
1060            cat genmake_tnc.log >> $LOGFILE
1061            if test "x$RET_COMPILE" = x0 ; then
1062                LIBS="$LIBS -lnetcdf"
1063                HAVE_NETCDF=t
1064                echo "check_netcdf: successful" >> $LOGFILE
1065            else
1066            # try again with "-lnetcdff" added to the libs
1067                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1068                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1069                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1071                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1072                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1073                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1074                RET_COMPILE=$?
1075                echo >> $LOGFILE
1076                cat genmake_tnc.log >> $LOGFILE
1077                if test "x$RET_COMPILE" = x0 ; then
1078                    LIBS="$LIBS -lnetcdff -lnetcdf"
1079                    HAVE_NETCDF=t
1080                    echo "check_netcdf: successful" >> $LOGFILE
1081                fi
1082            fi
1083        fi
1084        rm -f genmake_tnc*
1085        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1086    }
1087    
1088    check_lapack_libs()  {
1089        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1090        echo >> $LOGFILE
1091        echo "running: check_lapack_libs()" >> $LOGFILE
1092        cat <<EOF > genmake_tla.F
1093          program fgenla
1094          integer info
1095          integer ipiv( 2 )
1096          double precision ab( 4, 2 ), b( 2 )
1097          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1098          data b / 1., 1. /
1099          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1100          IF (info .NE. 0) write(*,*) 'Error:', info
1101          write(*,*) b
1102          end
1103    EOF
1104        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1105        cat genmake_tla.F >> genmake_tla.log
1106        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1107        RET_CPP=f
1108        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1109        echo "$COMM" >> genmake_tla.log
1110        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1111        if test "x$RET_CPP" = xf ; then
1112            echo "  WARNING: CPP failed to pre-process the lapack test." \
1113                >> genmake_tla.log
1114            echo "    Please check that \$INCLUDES is properly set." \
1115                >> genmake_tla.log
1116        fi
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1121        RET_COMPILE=$?
1122        cat genmake_tla.log >> $LOGFILE
1123    
1124        # test program execution not always possible (see check_netcdf_libs)
1125        #
1126        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1127        #RETVAL=$?
1128        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1129    
1130        if test "x$RET_COMPILE" = x0 ; then
1131            HAVE_LAPACK=t
1132            echo "check_lapack: successful" >> $LOGFILE
1133        else
1134            # try again with "-llapack" added to the libs
1135            echo "==> try again with added '-llapack'" > genmake_tla.log
1136            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1137            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1139            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1140                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1141                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1142            RET_COMPILE=$?
1143            echo >> $LOGFILE
1144            cat genmake_tla.log >> $LOGFILE
1145            if test "x$RET_COMPILE" = x0 ; then
1146                LIBS="$LIBS -llapack"
1147                HAVE_LAPACK=t
1148                echo "check_lapack: successful" >> $LOGFILE
1149            else
1150            # try again with "-lf77blas -lcblas" added to the libs
1151                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1152                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1153                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1155                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1156                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1157                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1158                RET_COMPILE=$?
1159                echo >> $LOGFILE
1160                cat genmake_tla.log >> $LOGFILE
1161                if test "x$RET_COMPILE" = x0 ; then
1162                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1163                    HAVE_LAPACK=t
1164                    echo "check_lapack: successful" >> $LOGFILE
1165                else
1166                # try again with "-latlas" added to the libs
1167                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1168                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1169                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1171                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1172                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1173                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1174                    RET_COMPILE=$?
1175                    echo >> $LOGFILE
1176                    cat genmake_tla.log >> $LOGFILE
1177                    if test "x$RET_COMPILE" = x0 ; then
1178                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1179                        HAVE_LAPACK=t
1180                        echo "check_lapack: successful" >> $LOGFILE
1181                    fi
1182                fi
1183            fi
1184        fi
1185        rm -f genmake_tla*
1186        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1187    }
1188    
1189    check_HAVE_FLUSH()  {
1190        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1191            return
1192        fi
1193        echo >> $LOGFILE
1194        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1195        cat <<EOF > genmake_tflsh.$FS
1196          program fgenflsh
1197          integer iounit
1198          character*9 fname
1199          iounit = 26
1200          fname = 'tmp.tflsh'
1201          open(iounit,FILE=fname,STATUS='unknown')
1202          write(iounit,*) 'genmake_tflsh: hello'
1203          call flush(iounit)
1204          close(iounit)
1205          end
1206    EOF
1207        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1208        cat genmake_tflsh.$FS >> genmake_tflsh.log
1209        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1210    
1211        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1212        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1213        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1214            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1215        RET_COMPILE=$?
1216    
1217        if test "x$RET_COMPILE" = x0 ; then
1218            HAVE_FLUSH=t
1219            #cat genmake_tflsh.log >> $LOGFILE
1220            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1221        else
1222            HAVE_FLUSH=f
1223            cat genmake_tflsh.log >> $LOGFILE
1224        fi
1225        rm -f genmake_tflsh*
1226        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1227    }
1228    
1229    ###############################################################################
1230    #   Sequential part of script starts here
1231    ###############################################################################
1232    
1233  #  Set defaults here  #  Set defaults here
1234  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 437  PLATFORM= Line 1237  PLATFORM=
1237  LN=  LN=
1238  S64=  S64=
1239  KPP=  KPP=
1240  FC=  #FC=
1241    #CC=gcc
1242    #CPP=
1243  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1244  DEFINES=  DEFINES=
1245  PACKAGES=  PACKAGES=
1246  ENABLE=  ENABLE=
1247  DISABLE=  DISABLE=
1248  MAKEFILE=  # MAKEFILE=
1249  MAKEDEPEND=  # MAKEDEPEND=
1250  PDEPEND=  PKG_DEPEND=
1251  DUMPSTATE=t  PKG_GROUPS=
1252  PDEFAULT=  DUMPSTATE=f
1253  OPTFILE=  OPTFILE=
1254  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1255  FFLAGS=  FFLAGS=
1256  FOPTIM=  FOPTIM=
1257    FEXTRAFLAGS=
1258    USE_EXTENDED_SRC=
1259    EXTENDED_SRC_FLAG=
1260    GET_FC_VERSION=
1261  CFLAGS=  CFLAGS=
1262  KFLAGS1=  KFLAGS1=
1263  KFLAGS2=  KFLAGS2=
1264    #LDADD=
1265  LIBS=  LIBS=
1266  KPPFILES=  KPPFILES=
1267  NOOPTFILES=  NOOPTFILES=
1268  NOOPTFLAGS=  NOOPTFLAGS=
1269    MPI=
1270    MPIPATH=
1271    OMP=
1272    OMPFLAG=
1273    USE_R4=
1274    TS=
1275    PAPIS=
1276    PCLS=
1277    FOOLAD=
1278    PAPI=
1279    PCL=
1280    HPMT=
1281    GSL=
1282    DEVEL=
1283    HAVE_TEST_L=
1284    
1285  # DEFINES checked by test compilation  # set this to "t" to enable lapack test
1286    CHECK_FOR_LAPACK=f
1287    
1288    # DEFINES checked by test compilation or command-line
1289  HAVE_SYSTEM=  HAVE_SYSTEM=
1290  HAVE_FDATE=  HAVE_FDATE=
1291  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1292  HAVE_CLOC=  HAVE_CLOC=
1293    # HAVE_SETRLSTK=
1294    HAVE_STAT=
1295    HAVE_NETCDF=
1296    HAVE_ETIME=
1297    IGNORE_TIME=
1298    HAVE_LAPACK=
1299    HAVE_FLUSH=
1300    
1301  MODS=  MODS=
1302  TOOLSDIR=  TOOLSDIR=
1303  SOURCEDIRS=  SOURCEDIRS=
1304  INCLUDEDIRS=  INCLUDEDIRS=
1305  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1306    
1307    #- local config file
1308    gm_local="genmake_local"
1309    
1310    G2ARGS=
1311    BASH=
1312  PWD=`pwd`  PWD=`pwd`
1313  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1314  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1315  THISHOSTNAME=`hostname`  EMBED_SRC=
1316    THISHOST=`hostname`
1317  THISCWD=`pwd`  THISCWD=`pwd`
1318  THISDATE=`date`  THISDATE=`date`
1319    THISUSER=`echo $USER`
1320    THISVER=
1321  MACHINE=`uname -a`  MACHINE=`uname -a`
1322  EXECUTABLE=  EXECUTABLE=
1323  EXEHOOK=  EXEHOOK=
1324  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1325  IEEE=  IEEE=
1326  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1327      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1328  fi  fi
1329    FS=
1330    FS90=
1331    
1332  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1333    OPENAD=
1334  AD_OPTFILE=  AD_OPTFILE=
1335    CAT_SRC_FOR_TAF=1
1336  TAF=  TAF=
1337  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1338  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 502  FTL_TAF_FLAGS= Line 1344  FTL_TAF_FLAGS=
1344  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1345  TAMC_EXTRA=  TAMC_EXTRA=
1346    
1347    DIVA=
1348    MPIINCLUDEDIR=
1349    MPI_HEADER_FILES=
1350    LOCAL_MPI_HEADERS=
1351    
1352  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1353  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1354  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1355    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1356    
1357  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1358  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1359  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1360  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1361  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1362  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1363    
1364  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1365  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1366  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1367  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1368    
1369  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1370  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1371    
1372  cat <<EOF  cat <<EOF
1373    
1374  GENMAKE :  GENMAKE :
1375    
1376  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1377  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1378    or for more detail see the Developer's HOWTO manual at:
1379    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1380    
1381  EOF  EOF
1382    
1383    LOGFILE="genmake.log"
1384    #- clean-up previous genmake logfiles:
1385    rm -f genmake_state genmake_*optfile $LOGFILE
1386    
1387  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1388    
1389  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1390  #parse_options  #parse_options
1391  ac_prev=  ac_prev=
1392  for ac_option ; do  for ac_option in "$@" ; do
1393    
1394        G2ARGS="$G2ARGS \"$ac_option\""
1395    
1396      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1397      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 571  for ac_option ; do Line 1399  for ac_option ; do
1399          ac_prev=          ac_prev=
1400          continue          continue
1401      fi      fi
1402        
1403      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1404        
1405      case $ac_option in      case $ac_option in
1406            
1407          -help | --help | -h | --h)          -help | --help | -h | --h)
1408              usage ;;              usage ;;
1409            
         -nooptfile | --nooptfile)  
             OPTFILE="NONE" ;;  
1410          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1411              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1412          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1413              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1414            
1415          -adoptfile | --adoptfile | -ad | --ad)          -oad | --oad)
1416                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1417            -nocat4ad | -dog4ad | -ncad | -dad)
1418                CAT_SRC_FOR_TAF=0 ;;
1419            -adoptfile | --adoptfile | -adof | --adof)
1420              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1421          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1422              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1423            
1424          -pdepend | --pdepend)          -pdepend | --pdepend)
1425              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1426          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1427              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1428            
1429          -pdefault | --pdefault)          -pgroups | --pgroups)
1430              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1431          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1432              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1433            
1434          -make | --make | -m | --m)          -make | --make | -m | --m)
1435              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1436          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1437              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1438            
1439          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1440                ac_prev=BASH ;;
1441            -bash=* | --bash=*)
1442                BASH=$ac_optarg ;;
1443    
1444            -makedepend | --makedepend | -md | --md)
1445                ac_prev=MAKEDEPEND ;;
1446            -makedepend=* | --makedepend=* | -md=* | --md=*)
1447                MAKEDEPEND=$ac_optarg ;;
1448    
1449            -makefile | --makefile | -mf | --mf)
1450              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1451          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1452              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1453            
1454          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1455              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1456              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1457              echo              echo
1458              usage              usage
1459              ;;              ;;
1460            
1461          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1462              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1463          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1464              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1465            
1466          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1467              ac_prev=MODS ;;              ac_prev=MODS ;;
1468          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1469              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1470            
1471          -disable | --disable)          -disable | --disable)
1472              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1473          -disable=* | --disable=*)          -disable=* | --disable=*)
1474              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1475            
1476          -enable | --enable)          -enable | --enable)
1477              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1478          -enable=* | --enable=*)          -enable=* | --enable=*)
1479              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1480            
1481          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1482              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1483          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 647  for ac_option ; do Line 1487  for ac_option ; do
1487  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1488  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1489  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1490                
1491            -cc | --cc)
1492                ac_prev=CC ;;
1493            -cc=* | --cc=*)
1494                CC=$ac_optarg ;;
1495    
1496          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1497              ac_prev=FC ;;              ac_prev=FC ;;
1498          -fc=* | --fc=*)          -fc=* | --fc=*)
1499              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1500            
1501            -fs | --fs)
1502                ac_prev=FS ;;
1503            -fs=* | --fs=*)
1504                FS=$ac_optarg ;;
1505    
1506            -fs90 | --fs90)
1507                ac_prev=FS90 ;;
1508            -fs90=* | --fs90=*)
1509                FS90=$ac_optarg ;;
1510    
1511            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1512                USE_R4=true ;;
1513    
1514          -ieee | --ieee)          -ieee | --ieee)
1515              IEEE=true ;;              IEEE=true ;;
1516          -noieee | --noieee)          -noieee | --noieee)
1517              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1518                    -devel | --devel)
1519  #       -jam | --jam)              IEEE=true ; DEVEL=true ;;
1520  #           JAM=1 ;;          -gsl | --gsl)
1521  #       -nojam | --nojam)              GSL=true ;;
1522  #           JAM=0 ;;  
1523                    -ts | --ts)
1524                TS=true ;;
1525            -papis | --papis)
1526                PAPIS=true ;;
1527            -pcls | --pcls)
1528                PCLS=true ;;
1529            -foolad | --foolad)
1530                FOOLAD=true ;;
1531            -papi | --papi)
1532                PAPI=true ;;
1533            -pcl | --pcl)
1534                PCL=true ;;
1535            -hpmt | --hpmt)
1536                HPMT=true ;;
1537    
1538            -mpi | --mpi)
1539                MPI=true ;;
1540            -mpi=* | --mpi=*)
1541                MPIPATH=$ac_optarg
1542                MPI=true ;;
1543    
1544            -omp | --omp)
1545                OMP=true ;;
1546            -omp=* | --omp=*)
1547                OMPFLAG=$ac_optarg
1548                OMP=true ;;
1549    
1550          -ds | --ds)          -ds | --ds)
1551              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1552            
1553            -extra_flag | --extra_flag)
1554                ac_prev=FEXTRAFLAGS ;;
1555            -extra_flag=* | --extra_flag=*)
1556                FEXTRAFLAGS=$ac_optarg ;;
1557    
1558          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1559              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1560          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 676  for ac_option ; do Line 1565  for ac_option ; do
1565          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1566              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1567    
1568            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1569                IGNORE_TIME="-DIGNORE_TIME" ;;
1570    
1571            -es | --es | -embed-source | --embed-source)
1572                EMBED_SRC=t ;;
1573    
1574          -*)          -*)
1575              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1576              usage              usage
1577              ;;              ;;
1578            
1579          *)          *)
1580              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1581              usage              usage
1582              ;;              ;;
1583            
1584      esac      esac
1585        
1586  done  done
1587    
1588    #TMP=./genmk_$$
1589    #- try to put temporary files in system-local /tmp dir
1590    TMP=/tmp/genmk_${USER}_$$
1591    touch $TMP ; retVal=$?
1592    if [ $retVal -eq 0 ] ; then
1593      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1594    else
1595      TMP=./genmk_$$
1596    fi
1597    rm -f $TMP
1598    #echo "  temp files: $TMP.*"
1599    
1600    printf "  getting local config information:  "
1601    if test -f $gm_local ; then
1602        echo "using $gm_local"
1603        . $gm_local
1604    else
1605        echo "none found"
1606    fi
1607    
1608  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1609      echo      echo
1610      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1611      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1612      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1613      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1614        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1615        echo "WARNING: ignore \"./.genmakerc\" and continue."
1616      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1617  fi  fi
1618    
1619    #  Find the MITgcm ${ROOTDIR}
1620  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1621      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1622        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1623          ROOTDIR=".."          ROOTDIR=".."
1624      else      else
1625          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1626              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1627                  ROOTDIR=$d                  ROOTDIR=$d
1628                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1629                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1630                  break                  break
1631              fi              fi
1632          done          done
# Line 727  if test ! -d ${ROOTDIR} ; then Line 1643  if test ! -d ${ROOTDIR} ; then
1643      exit 1      exit 1
1644  fi  fi
1645    
1646  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1647    version_file="${ROOTDIR}/doc/tag-index"
1648    if test -f $version_file ; then
1649        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1650    #-  remove ./BUILD_INFO.h file if older than version_file
1651        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1652            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1653            rm -f ./BUILD_INFO.h
1654        fi
1655    fi
1656    
1657    if test "x$MAKEFILE" = x ; then
1658        MAKEFILE="Makefile"
1659    fi
1660    
1661    echo "  getting OPTFILE information:"
1662  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1663      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1664          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1665          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1666          find_possible_configs          find_possible_optfile
1667      else      else
1668          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1669      fi      fi
# Line 743  if test "x$OPTFILE" != xNONE ; then Line 1674  if test "x$OPTFILE" != xNONE ; then
1674          . "$OPTFILE"          . "$OPTFILE"
1675          RETVAL=$?          RETVAL=$?
1676          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1677              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1678              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1679              exit 1              exit 1
1680          fi          fi
1681          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1682              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1683          fi          fi
1684      else      else
# Line 756  if test "x$OPTFILE" != xNONE ; then Line 1687  if test "x$OPTFILE" != xNONE ; then
1687      fi      fi
1688  fi  fi
1689    
1690  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1691  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1692      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1693            AD_OPTFILE=$MITGCM_AD_OF
1694        elif test "x$OPENAD" = x ; then
1695          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1696      else      else
1697          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1698      fi      fi
1699  fi  fi
1700  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 770  if test "x${AD_OPTFILE}" != xNONE ; then Line 1703  if test "x${AD_OPTFILE}" != xNONE ; then
1703          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1704          RETVAL=$?          RETVAL=$?
1705          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1706              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1707              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1708              exit 1              exit 1
1709          fi          fi
1710          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1711              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1712          fi          fi
1713      else      else
# Line 783  if test "x${AD_OPTFILE}" != xNONE ; then Line 1716  if test "x${AD_OPTFILE}" != xNONE ; then
1716      fi      fi
1717  fi  fi
1718    
1719  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #====================================================================
1720    #  Set default values if not set by the optfile
1721    #
1722    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1723  #  either set defaults or complain and abort!  #  either set defaults or complain and abort!
1724    if test ! "x$BASH" = x ; then
1725        # add a trailing space so that it works within the Makefile syntax (see below)
1726        BASH="$BASH "
1727    fi
1728  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1729      cat <<EOF 1>&2      cat <<EOF 1>&2
1730    
# Line 795  Error: no Fortran compiler: please speci Line 1735  Error: no Fortran compiler: please speci
1735  EOF  EOF
1736      exit 1      exit 1
1737  fi  fi
1738    if test "x$GET_FC_VERSION" != x ; then
1739      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1740      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1741      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1742      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1743      if test -s genmake_fc_vers1 ; then
1744        cat genmake_fc_vers1 >> $LOGFILE
1745      else
1746        cat genmake_fc_vers2 >> $LOGFILE
1747      fi
1748      echo "<-- compiler version ----" >> $LOGFILE
1749      rm -f genmake_fc_vers1 genmake_fc_vers2
1750    fi
1751    
1752    if test "x$CC" = x ; then
1753        look_for_C_compilers
1754    fi
1755    
1756  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1757      LINK=$FC      LINK=$FC
1758  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
1759  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
1760      MAKE="make"      MAKE="make"
1761  fi  fi
1762    if test "x$CPP" = x ; then
1763        CPP="cpp -traditional -P"
1764    fi
1765    #EH3 === UGLY ===
1766    #  The following is an ugly little hack to check for $CPP in /lib/ and
1767    #  it should eventually be replaced with a more general function that
1768    #  searches a combo of the user's path and a list of "usual suspects"
1769    #  to find the correct location for binaries such as $CPP.
1770    for i in " " "/lib/" ; do
1771        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1772    done
1773    #EH3 === UGLY ===
1774  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1775  RETVAL=$?  RETVAL=$?
1776  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 820  EOF Line 1787  EOF
1787  else  else
1788      rm -f test_cpp      rm -f test_cpp
1789  fi  fi
1790  if test "x$MAKEDEPEND" = x ; then  
1791      MAKEDEPEND=makedepend  look_for_makedepend
1792  fi  
1793    #  Check that soft-link command is set and usable
1794  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1795      LN="ln -s"      LN="ln -s"
1796  fi  fi
# Line 832  RETVAL=$? Line 1800  RETVAL=$?
1800  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1801      cat <<EOF 1>&2      cat <<EOF 1>&2
1802    
1803  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1804    command in the optfile.    command in the optfile.
1805    
1806  EOF  EOF
1807      exit 1      exit 1
1808  fi  fi
1809    test -L genmake_tlink > /dev/null 2>&1
1810    RETVAL=$?
1811    if test "x$RETVAL" = x0 ; then
1812        HAVE_TEST_L=t
1813    fi
1814  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1815    
1816    #  Check for broken *.F/*.f handling and fix if possible
1817    check_for_broken_Ff
1818    
1819    if test ! "x$MPI" = x ; then
1820          echo "  Turning on MPI cpp macros"
1821          DEFINES="$DEFINES -DALLOW_USE_MPI"
1822    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1823    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1824    fi
1825    if test ! "x$OMP" = x ; then
1826          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1827          FFLAGS="$FFLAGS $OMPFLAG"
1828          F90FLAGS="$F90FLAGS $OMPFLAG"
1829          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1830    fi
1831    
1832    if test ! "x$USE_R4" = x ; then
1833          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1834          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1835    fi
1836    
1837    if test ! "x$TS" = x ; then
1838          echo "  Turning on timing per timestep"
1839          if test ! "x$FOOLAD" = x ; then
1840                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1841          else
1842                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1843          fi
1844          PACKAGES="$PACKAGES showflops"
1845    fi
1846    if test ! "x$PAPIS" = x ; then
1847          echo "  Turning on PAPI flop summary per timestep"
1848          echo "  Please make sure PAPIINC, PAPILIB are defined"
1849          if test ! "x$FOOLAD" = x ; then
1850                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1851          else
1852                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1853          fi
1854          INCLUDES="$INCLUDES $PAPIINC"
1855          LIBS="$LIBS $PAPILIB"
1856          PACKAGES="$PACKAGES showflops"
1857    fi
1858    if test ! "x$PCLS" = x ; then
1859          echo "  Turning on PCL counter summary per timestep"
1860          echo "  Please make sure PCLINC, PCLLIB are defined"
1861          if test ! "x$FOOLAD" = x ; then
1862                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1863          else
1864                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1865          fi
1866          INCLUDES="$INCLUDES $PCLINC"
1867          LIBS="$LIBS $PCLLIB"
1868          PACKAGES="$PACKAGES showflops"
1869    fi
1870    if test ! "x$PAPI" = x ; then
1871          if test ! "x$PAPIS" = x ; then
1872              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1873              echo "  Sticking with PAPI flop summary per timestep!"
1874          else
1875              echo "  Turning on performance analysis with PAPI"
1876              echo "  Please make sure PAPIINC, PAPILIB are defined"
1877              DEFINES="$DEFINES -DUSE_PAPI"
1878              INCLUDES="$INCLUDES $PAPIINC"
1879              LIBS="$LIBS $PAPILIB"
1880          fi
1881    fi
1882    if test ! "x$PCL" = x ; then
1883          if test ! "x$PCLS" = x ; then
1884              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1885              echo "  Sticking with PCL flop summary per timestep!"
1886          else
1887              echo "  Turning on performance analysis with PCL"
1888              echo "  Please make sure PCLINC, PCLLIB are defined"
1889              DEFINES="$DEFINES -DUSE_PCL"
1890              INCLUDES="$INCLUDES $PCLINC"
1891              LIBS="$LIBS $PCLLIB"
1892          fi
1893    fi
1894    if test ! "x$HPMT" = x ; then
1895          if test ! "x$PAPI" = x ; then
1896              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1897              echo "  Sticking with PAPI!"
1898          else
1899            if test ! "x$PCL" = x ; then
1900              echo "  PCL and the HPM Toolkit cannot co-exist!"
1901              echo "  Sticking with PCL!"
1902            else
1903              echo "  Turning on performance analysis with the HPM Toolkit"
1904              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1905              DEFINES="$DEFINES -DUSE_LIBHPM"
1906              INCLUDES="$INCLUDES $HPMTINC"
1907              LIBS="$LIBS $HPMTLIB"
1908            fi
1909          fi
1910    fi
1911    if test ! "x$GSL" = x ; then
1912          echo "  Turning on use of GSL to control floating point calculations"
1913          echo "  Please make sure GSLINC, GSLLIB are defined"
1914          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1915          INCLUDES="$INCLUDES $GSLINC"
1916          LIBS="$LIBS $GSLLIB"
1917    fi
1918    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1919    if test ! "x$USE_EXTENDED_SRC" = x ; then
1920          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1921          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1922    fi
1923    
1924  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1925  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1926  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1927        program hello        program hello
1928        call system('echo hi')        call system('echo hi')
1929        end        end
1930  EOF  EOF
1931  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1932  RETVAL=$?  RETVAL=$?
1933  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1934      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 860  else Line 1940  else
1940  fi  fi
1941  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1942    
1943  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1944  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1945        program hello        program hello
1946        CHARACTER(128) string        CHARACTER*(128) string
1947        string = ' '        string = ' '
1948        call fdate( string )        call fdate( string )
1949        print *, string        print *, string
1950        end        end
1951  EOF  EOF
1952  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1953  RETVAL=$?  RETVAL=$?
1954  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1955      HAVE_FDATE=t      HAVE_FDATE=t
# Line 881  else Line 1961  else
1961  fi  fi
1962  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1963    
1964  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Do we have the etime() command using $FC... "
1965    cat > genmake_tcomp_1.$FS <<EOF
1966          program hello
1967          REAL*4 actual, tarray(2)
1968          EXTERNAL ETIME
1969          REAL*4 ETIME
1970          actual = ETIME( tarray )
1971          print *, tarray
1972          end
1973    EOF
1974    $FC $FFLAGS -o genmake_tcomp_1 genmake_tcomp_1.$FS > genmake_tcomp.log 2>&1
1975    RETVAL=$?
1976    if test "x$RETVAL" = x0 ; then
1977        HAVE_ETIME='Fct'
1978        DEFINES="$DEFINES -DHAVE_ETIME_FCT"
1979        echo " yes (${HAVE_ETIME})"
1980    else
1981      cat > genmake_tcomp_2.$FS <<EOF
1982          program hello
1983          REAL*4 actual, tarray(2)
1984          actual = -999.
1985          call ETIME( tarray, actual )
1986          if ( actual.ge.0. ) then
1987            print *, 0, tarray, actual
1988          else
1989            print *, 1, tarray, actual
1990          endif
1991          end
1992    EOF
1993      $FC $FFLAGS -o genmake_tcomp_2 genmake_tcomp_2.$FS >> genmake_tcomp.log 2>&1
1994      RETVAL=$?
1995      if test "x$RETVAL" = x0 ; then
1996        echo -n 'c,'
1997        ./genmake_tcomp_2 > genmake_tcomp_2.out 2>&1
1998        RETVAL=$?
1999      fi
2000      if test "x$RETVAL" = x0 ; then
2001        echo -n 'r:'
2002        RETVAL=`cat genmake_tcomp_2.out | $AWK '{print $1}'`
2003      fi
2004      if test "x$RETVAL" = x0 ; then
2005        HAVE_ETIME='SbR'
2006        DEFINES="$DEFINES -DHAVE_ETIME_SBR"
2007        echo " yes (${HAVE_ETIME})"
2008      else
2009        HAVE_ETIME=
2010        echo " no"
2011      fi
2012    fi
2013    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2014    rm -f genmake_tcomp*
2015    
2016    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
2017  check_HAVE_CLOC  check_HAVE_CLOC
2018  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
2019        DEFINES="$DEFINES -DHAVE_CLOC"
2020      echo "yes"      echo "yes"
2021  else  else
2022      echo "no"      echo "no"
2023        if test "x$EMBED_SRC" = xt ; then
2024            echo "    WARNING: you requested file embedding but it has"
2025            echo "      been disabled since C code cannot be called"
2026            EMBED_SRC=
2027        fi
2028  fi  fi
2029  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template  rm -f genmake_t*
2030  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  
2031  RETVAL=$?  printf "  Can we unlimit the stack size using $FC...  "
2032  if test "x$RETVAL" != x0 ; then  check_HAVE_SETRLSTK
2033      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h  if test "x$HAVE_SETRLSTK" = xt ; then
2034        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2035        echo "yes"
2036    else
2037        echo "no"
2038    fi
2039    rm -f genmake_t*
2040    
2041    printf "  Can we register a signal handler using $FC...  "
2042    check_HAVE_SIGREG
2043    if test "x$HAVE_SIGREG" = xt ; then
2044        DEFINES="$DEFINES -DHAVE_SIGREG"
2045        echo "yes"
2046    else
2047        echo "no"
2048    fi
2049    rm -f genmake_t*
2050    
2051    printf "  Can we use stat() through C calls...  "
2052    check_HAVE_STAT
2053    if test "x$HAVE_STAT" != x ; then
2054        DEFINES="$DEFINES -DHAVE_STAT"
2055        echo "yes"
2056    else
2057        echo "no"
2058  fi  fi
2059  rm -f genmake_t*  rm -f genmake_t*
2060    
2061    printf "  Can we create NetCDF-enabled binaries...  "
2062    check_netcdf_libs
2063    if test "x$HAVE_NETCDF" != x ; then
2064        DEFINES="$DEFINES -DHAVE_NETCDF"
2065        echo "yes"
2066    else
2067        echo "no"
2068    fi
2069    
2070    printf "  Can we create LAPACK-enabled binaries...  "
2071    check_lapack_libs
2072    if test "x$HAVE_LAPACK" != x ; then
2073        DEFINES="$DEFINES -DHAVE_LAPACK"
2074        echo "yes"
2075    else
2076        echo "no"
2077    fi
2078    
2079    printf "  Can we call FLUSH intrinsic subroutine...  "
2080    check_HAVE_FLUSH
2081    if test "x$HAVE_FLUSH" = xt ; then
2082        DEFINES="$DEFINES -DHAVE_FLUSH"
2083        echo "yes"
2084    else
2085        echo "no"
2086    fi
2087    
2088    DEFINES="$DEFINES $IGNORE_TIME"
2089    if test "x$EMBED_SRC" = xt ; then
2090        build_embed_encode
2091    fi
2092    if test "x$EMBED_SRC" = xt ; then
2093        ENABLE="$ENABLE embed_files"
2094    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2095    fi
2096    
2097  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2098  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2099  for d in $MODS ; do  for d in $MODS ; do
2100      if test ! -d $d ; then      if test ! -d $d ; then
2101          echo          echo
2102          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2103          exit 1          exit 1
2104      else      else
2105          echo -n " $d"          printf "$d "
2106          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2107          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2108      fi      fi
2109  done  done
2110  echo  echo
2111    
2112  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2113      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2114  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2115    
2116  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2117      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2118        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2119          EXEDIR=../exe          EXEDIR=../exe
2120      else      else
2121          EXEDIR=.          EXEDIR=.
# Line 935  if test "x${TOOLSDIR}" = x ; then Line 2130  if test "x${TOOLSDIR}" = x ; then
2130      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2131  fi  fi
2132  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2133      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2134      exit 1      exit 1
2135  fi  fi
2136  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2137      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2138        RETVAL=$?
2139        if test "x${RETVAL}" = x0 ; then
2140            S64='$(TOOLSDIR)/set64bitConst.sh'
2141        else
2142            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2143            RETVAL=$?
2144            if test "x${RETVAL}" = x0 ; then
2145                S64='$(TOOLSDIR)/set64bitConst.csh'
2146            else
2147                cat <<EOF
2148    
2149    ERROR: neither of the two default scripts:
2150    
2151        ${TOOLSDIR}/set64bitConst.sh
2152        ${TOOLSDIR}/set64bitConst.csh
2153    
2154      are working so please check paths or specify (with \$S64) a
2155      working version of this script.
2156    
2157    EOF
2158                exit 1
2159            fi
2160        fi
2161  fi  fi
2162  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2163    
2164  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2165    
2166    #  Set Standard Code Directories:
2167    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2168        STANDARDDIRS="eesupp model"
2169    fi
2170    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2171    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2172    ckM=$?
2173    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2174    ckE=$?
2175    if test $ckM = 0 -a $ckE = 1 ; then
2176        STANDARDDIRS="$STANDARDDIRS eesupp"
2177    fi
2178    
2179  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2180  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2181  #  they appear as regular source code  #  they appear as regular source code
2182  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2183      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2184      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2185        ) > make_eesupp.errors 2>&1
2186      RETVAL=$?      RETVAL=$?
2187      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2188          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2189      else      else
2190          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2191          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2192          exit 1          exit 1
2193      fi      fi
2194  fi  fi
2195    
2196    #same for pkg/exch2 and pkg/regrid
2197    for pdir in exch2 regrid ; do
2198        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2199            echo "  Making source files in pkg/${pdir} from templates"
2200            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2201            ) > make_${pdir}.errors 2>&1
2202            RETVAL=$?
2203            if test "x${RETVAL}" = x0 ; then
2204                rm -f make_${pdir}.errors
2205            else
2206                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2207                cat make_${pdir}.errors 1>&2
2208                exit 1
2209            fi
2210        fi
2211    done
2212    
2213  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2214  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2215      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2216      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2217          PDEPEND=$tmp  fi
2218      else  if  test "x${PKG_DEPEND}" = x ; then
2219          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2220          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2221  else  else
2222      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2223          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2224          exit 1          exit 1
2225      fi      fi
2226        echo "  getting package dependency info from  $PKG_DEPEND"
2227    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2228        get_pdepend_list $PKG_DEPEND
2229  fi  fi
2230  echo "  getting package dependency info from  $PDEPEND"  
2231  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2232  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2233  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2234      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2235      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2236  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2237  if test ! "x${RETVAL}" = x0 ; then  fi
2238      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2239      exit 1          echo "Warning:  No package groups information was specified."
2240            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2241    else
2242        if test ! -r ${PKG_GROUPS} ; then
2243            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2244            exit 1
2245        fi
2246        echo "  getting package groups info from      $PKG_GROUPS"
2247  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2248    
2249  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2250  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2251  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2252  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2253      for i in "." $MODS ; do      for i in "." $MODS ; do
2254          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2255                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2256                  break                  break
2257          fi          fi
2258      done      done
2259  fi  fi
2260  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2261      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2262  fi      if test "x${PKG_GROUPS}" = x ; then
2263  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2264      echo "    default packages file disabled"          exit 1
2265        fi
2266  else  else
2267      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2268          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2269            exit 1
2270      else      else
2271          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2272          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2273          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2274          RETVAL=$?          RETVAL=$?
2275          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2276              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2277              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2278              exit 1              exit 1
2279          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2280      fi      fi
2281  fi  fi
2282    for i in $pkg_list ; do
2283        PACKAGES="$PACKAGES $i"
2284    done
2285    echo     "    before group expansion packages are:$PACKAGES"
2286    if test "x${PKG_GROUPS}" != x ; then
2287        RET=1
2288        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2289        echo "    after group expansion packages are: $PACKAGES"
2290    fi
2291    
2292  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2293    echo "" > $TMP.pack
2294    for i in $PACKAGES ; do
2295        echo $i >> $TMP.pack
2296    done
2297    for i in `grep  "-" $TMP.pack` ; do
2298        j=`echo $i | sed 's/[-]//'`
2299        DISABLE="$DISABLE $j"
2300    done
2301  pack=  pack=
2302  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2303      addit="t"      addit="t"
# Line 1044  for p in $PACKAGES ; do Line 2312  for p in $PACKAGES ; do
2312  done  done
2313  PACKAGES="$pack"  PACKAGES="$pack"
2314  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2315  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2316  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2317    # Test if each explicitly referenced package exists
2318  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2319      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2320          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2321            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2322          exit 1          exit 1
2323      fi      fi
2324      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2325  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2326  PACKAGES=  PACKAGES=
2327  for i in $pack ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2328      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2329  done  done
2330  echo "    packages are:  $PACKAGES"  rm -f $TMP.pack
2331    echo "    packages are: $PACKAGES"
2332    
2333    #  Check for package MNC: if NetCDF is available, then build the MNC
2334    #  template files ; otherwise, delete mnc from the list of packages.
2335    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2336    mnc_in=$?
2337    if test "x$HAVE_NETCDF" != xt ; then
2338        if test "x$mnc_in" = x0 ; then
2339            cat <<EOF
2340    *********************************************************************
2341    WARNING: the "mnc" package was enabled but tests failed to compile
2342      NetCDF applications.  Please check that:
2343    
2344      1) NetCDF is correctly installed for this compiler and
2345      2) the LIBS variable (within the "optfile") specifies the correct
2346           NetCDF library to link against.
2347    
2348      Due to this failure, the "mnc" package is now DISABLED.
2349    *********************************************************************
2350    EOF
2351            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2352            DISABLE="$DISABLE mnc"
2353        else
2354        #  this prevent to add mnc (due to pdepend rules) if not available
2355            DISABLE="$DISABLE mnc"
2356        fi
2357    else
2358        # we have NetCDF, we try to build MNC template files
2359        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2360        RETVAL=$?
2361        if test "x${RETVAL}" = x0 ; then
2362            rm -f make_mnc.errors
2363        else
2364            echo "Error: problem encountered while building source files in pkg/mnc:"
2365            cat make_mnc.errors 1>&2
2366            if test "x$mnc_in" = x0 ; then
2367                exit 1
2368            else
2369                DISABLE="$DISABLE mnc"
2370            fi
2371        fi
2372    fi
2373    
2374    #  Check for package PROFILES: if NetCDF is not available,
2375    #  then delete profiles from the list of available packages.
2376    if test "x$HAVE_NETCDF" != xt ; then
2377        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2378        RETVAL=$?
2379        if test "x$RETVAL" = x0 ; then
2380            cat <<EOF
2381    *********************************************************************
2382    WARNING: the "profiles" package was enabled but tests failed to
2383      compile NetCDF applications.  Please check that:
2384    
2385      1) NetCDF is correctly installed for this compiler and
2386      2) the LIBS variable (within the "optfile") specifies the correct
2387           NetCDF library to link against.
2388    
2389      Due to this failure, the "profiles" package is now DISABLED.
2390    *********************************************************************
2391    EOF
2392            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2393            DISABLE="$DISABLE profiles"
2394        else
2395        #  this prevent to add profiles (due to pdepend rules) if not available
2396            DISABLE="$DISABLE profiles"
2397        fi
2398    fi
2399    
2400    #  Make sure the openad package is enabled if using OpenAD
2401    if test "x$OPENAD" != x ; then
2402        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2403        RETVAL=$?
2404        if test "x$RETVAL" != x0 ; then
2405            cat <<EOF
2406    
2407    *********************************************************************
2408    ERROR: when generating an adjoint with OpenAD, the openad package
2409      must be enabled.  Please add it to packages.conf.
2410    *********************************************************************
2411    
2412    EOF
2413            exit 1
2414        fi
2415    fi
2416    
2417  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2418  ck=    echo "  applying package dependency rules"
2419  while test "x$ck" != xtt ; do    ck=
2420      while test "x$ck" != xtt ; do
2421      i=0      i=0
2422      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2423      rtot=$nname      rtot=$nname
2424      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2425    
2426          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2427          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1079  while test "x$ck" != xtt ; do Line 2433  while test "x$ck" != xtt ; do
2433                  pin="t"                  pin="t"
2434              fi              fi
2435          done          done
2436            #  or in the current $STANDARDDIRS list?
2437            for p in $STANDARDDIRS ; do
2438                if test "x$p" = "x$pname" ; then pin="t" ; fi
2439            done
2440    
2441          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2442          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1101  while test "x$ck" != xtt ; do Line 2459  while test "x$ck" != xtt ; do
2459    
2460          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2461          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2462                #echo "   " $pname ": need to add :" $dname
2463              in_dis="f"              in_dis="f"
2464              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2465                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1121  while test "x$ck" != xtt ; do Line 2480  while test "x$ck" != xtt ; do
2480          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2481          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2482              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2483              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2484              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2485              exit 1              exit 1
2486          fi          fi
2487          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2488            #i=$(( $i + 1 ))
2489      done      done
2490      ck=$ck"t"      ck=$ck"t"
2491  done    done
2492  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2493    fi
2494  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2495      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2496      if test -d $adr ; then      if test -d $adr ; then
# Line 1144  for i in $PACKAGES ; do Line 2505  for i in $PACKAGES ; do
2505      fi      fi
2506  done  done
2507    
   
2508  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2509  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2510  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2511  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2512  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2513  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2514  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1164  for n in $names ; do Line 2524  for n in $names ; do
2524              fi              fi
2525          done          done
2526          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2527              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2528              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2529          fi          fi
2530      fi      fi
2531  done  done
2532  ENABLED_PACKAGES=  ENABLED_PACKAGES=
2533  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2534      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2535      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2536  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2537    
2538  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2539      case $i in      case $i in
2540          aim_v23)          aim_v23)
2541              DEFINES="$DEFINES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2542              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2543              ;;              ;;
2544      esac      esac
2545  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2546    
2547  done  done
2548    
2549  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2550  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2551  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2552      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2553            adr="$ROOTDIR/$d/src"
2554            if test ! -d $adr ; then
2555                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2556                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2557                exit 1
2558            else
2559                SOURCEDIRS="$SOURCEDIRS $adr"
2560            fi
2561            adr="$ROOTDIR/$d/inc"
2562            if test ! -d $adr ; then
2563                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2564                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2565                exit 1
2566            else
2567                INCLUDEDIRS="$INCLUDEDIRS $adr"
2568            fi
2569        done
2570  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2571    
2572  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2573  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2574  CPP_OPTIONS=  CPP_OPTIONS=
2575    CPP_EEOPTIONS=
2576  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2577    names=`ls -1 "$ROOTDIR/pkg"`
2578  for i in $spaths ; do  for i in $spaths ; do
2579      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2580      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2581          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2582          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2583          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2584            for n in $names ; do
2585                test_for_package_in_cpp_options $CPP_OPTIONS $n
2586            done
2587        fi
2588        try="$i/CPP_EEOPTIONS.h"
2589        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2590            echo "    found CPP_EEOPTIONS=\"$try\""
2591            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2592    #**** not yet enabled ****
2593    #        test_for_mpi_in_cpp_eeoptions $try
2594    #**** not yet enabled ****
2595            CPP_EEOPTIONS="$try"
2596      fi      fi
2597  done  done
2598  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2599      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2600      exit 1      exit 1
2601  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2602    
2603  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2604  #  compiler.  #  compiler.
2605  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2606      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2607  fi  fi
2608  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2609    touch $TMP.adSrcFiles
2610  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2611      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2612      for j in $list_files ; do      for j in $list_files ; do
2613          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2614      done      done
2615  done  done
2616    if test ! "x"$FS = "x.f" ; then
2617        cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2618        mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2619    fi
2620    
2621  echo  echo
2622  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2623  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2624  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2625      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2626          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2627      fi      fi
2628  done  done
2629    
2630    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2631        if test ! "x$MPIINCLUDEDIR" = x ; then
2632            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2633            #   checking for additional included headers (in case of chain of included
2634            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2635            mpi_headers_do_local_copy
2636        fi
2637    fi
2638    
2639  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2640  rm -rf .links.tmp  rm -rf $TMP.links
2641  mkdir .links.tmp  mkdir $TMP.links
2642  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2643  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2644  echo -n 'SRCFILES = '    > srclist.inc      echo
2645  echo -n 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2646  echo -n 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2647  echo -n 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2648  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2649        echo "   sane such as:"
2650        echo
2651        echo "      umask 0002"
2652        echo
2653        echo "   and please verify that you have the proper permissions for"
2654        echo "   creating sub-directories and then reading files created"
2655        echo "   within them."
2656        echo
2657        exit 1
2658    fi
2659    rm -f $TMP.links/foo
2660    
2661    if test "x$OPENAD" != x ; then
2662        OAD_DONT_COMPILE="/dev/null"
2663        OAD_DONT_TRANSFORM="/dev/null"
2664        OAD_KEEP_ORIGINAL="/dev/null"
2665        OAD_CB2M_FILES="/dev/null"
2666        OADTOOLS="$TOOLSDIR/OAD_support"
2667        echo "  looking for dontCompile file:  "
2668        for i in "." $MODS $OADTOOLS ; do
2669            if test -r $i"/dontCompile" ; then
2670                OAD_DONT_COMPILE=$i"/dontCompile"
2671                echo "     found $OAD_DONT_COMPILE"
2672                break
2673            fi
2674        done
2675        echo "  looking for dontTransform file:  "
2676        for i in "." $MODS $OADTOOLS ; do
2677            if test -r $i"/dontTransform" ; then
2678                OAD_DONT_TRANSFORM=$i"/dontTransform"
2679                echo "     found $OAD_DONT_TRANSFORM"
2680                break
2681            fi
2682        done
2683        echo "  looking for keepOriginal file:  "
2684        for i in "." $MODS $OADTOOLS ; do
2685            if test -r $i"/keepOriginal" ; then
2686                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2687                echo "     found $OAD_KEEP_ORIGINAL"
2688                break
2689            fi
2690        done
2691        echo "  looking for cb2mFiles:  "
2692        for i in "." $MODS $OADTOOLS ; do
2693            if test -r $i"/cb2mFiles" ; then
2694                OAD_CB2M_FILES=$i"/cb2mFiles"
2695                echo "     found $OAD_CB2M_FILES"
2696                break
2697            fi
2698        done
2699        echo "   OpenAD exceptions:  "
2700    fi
2701    
2702    echo "# This section creates symbolic links" > $TMP.srclinks
2703    echo "" >> $TMP.srclinks
2704    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2705    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2706    printf 'C_SRC_FILES = '   > $TMP.csrclist
2707    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2708    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2709    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2710  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2711  for d in $alldirs ; do  for d in $alldirs ; do
2712      deplist=      deplist=
2713      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2714      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2715        if test "x$OPENAD" != x ; then
2716            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2717        fi
2718      for sf in $sfiles ; do      for sf in $sfiles ; do
2719          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2720              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2721                  case $d/$sf in                  ignore_f=f
2722                    ./$PACKAGES_DOT_H)                  case $d/$sf in
2723                      ./$PACKAGES_DOT_H)
2724                            ignore_f=t
2725                            ;;
2726                      ./AD_CONFIG.h)
2727                            ignore_f=t
2728                          ;;                          ;;
2729                    ./AD_CONFIG.h)                    ./FC_NAMEMANGLE.h)
2730                            ignore_f=t
2731                          ;;                          ;;
2732                    ./FC_NAMEMANGLE.h)                    ./BUILD_INFO.h)
2733                            ignore_f=t
2734                          ;;                          ;;
2735                    *)                    ./EMBEDDED_FILES.h)
2736                          touch .links.tmp/$sf                          ignore_f=t
                         deplist="$deplist $sf"  
2737                          ;;                          ;;
2738                  esac                    *)
2739                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                          #  For the local directory *ONLY*,
2740                  case $extn in                          #  ignore all soft-links
2741                      F)                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2742                          echo    " \\"  >> srclist.inc                              ignore_f=t
2743                          echo -n " $sf" >> srclist.inc                          else
2744                                touch $TMP.links/$sf
2745                                deplist="$deplist $sf"
2746                            fi
2747                            ;;
2748                    esac
2749                    if test "x$ignore_f" = xf ; then
2750                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2751                        case $extn in
2752                          F)
2753                            echo    " \\"  >> $TMP.F77srclist
2754                            printf " $sf" >> $TMP.F77srclist
2755                            if test "x$OPENAD" = x ; then
2756                                basename=${sf%%.F}
2757                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2758                                if test -z "$isAD" ; then
2759                                    echo    " \\"  >> $TMP.nonADF77srclist
2760                                    printf " $sf" >> $TMP.nonADF77srclist
2761                                fi
2762                            else #- OpenAD case:
2763                                basename=${sf%%.F}
2764                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2765                                if test -z "$isAD" ; then
2766                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2767                                    if test -z "$toBeIgnored" ; then
2768                                        echo    " \\"  >> $TMP.nonADF77srclist
2769                                        printf " $sf" >> $TMP.nonADF77srclist
2770                                    else
2771                                        echo "    not to be compiled   :  $sf"
2772                                    fi
2773                                else # file is initially listed as an AD file we want to exclude it
2774                                     # or we want to retain the untransformed version
2775                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2776                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2777                                    if test -n "$notToBeTransformed"; then
2778                                        echo "    not to be transformed:  $sf"
2779                                    fi
2780                                    if test -n "$untransformedVersionToBeKept" ; then
2781                                        echo "    original to be kept  :  $sf"
2782                                    fi
2783                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2784                                        echo    " \\"  >> $TMP.nonADF77srclist
2785                                        printf " $sf" >> $TMP.nonADF77srclist
2786                                    fi
2787                                fi
2788                            fi
2789                          ;;                          ;;
2790                      F90)                      F90)
2791                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2792                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2793                          ;;                          ;;
2794                      c)                      c)
2795                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2796                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2797                          ;;                          ;;
2798                      h)                      h)
2799                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2800                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2801                          ;;                          ;;
2802                      flow)                      flow)
2803                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> $TMP.ad_flow_files
2804                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> $TMP.ad_flow_files
2805                          ;;                          ;;
2806                  esac                     esac
2807                    fi
2808              fi              fi
2809          fi          fi
2810      done      done
2811      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2812          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2813          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2814          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2815          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2816    # We need to make sure that the link isn't already there.
2817    # This may happen when make thinks that a header file has to be "remade"
2818    # because a module it depends on has changed.  In this case we do nothing.
2819            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2820          fi
2821      fi      fi
2822  done  done
2823  rm -rf .links.tmp  rm -rf $TMP.links
2824  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2825  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2826  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2827  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2828  echo "" >> ad_flow_files.inc  echo "" >> $TMP.hsrclist
2829    echo "" >> $TMP.ad_flow_files
2830    
2831    CMDLINE=$0
2832    for xx in "$@" ; do nw=`echo $xx | wc -w`
2833        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2834                            else CMDLINE="$CMDLINE '$xx'" ; fi
2835    done
2836    
2837  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2838      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2839  fi  fi
2840  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2841  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1338  echo "#    $MACHINE" >> $MAKEFILE Line 2843  echo "#    $MACHINE" >> $MAKEFILE
2843  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2844  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2845  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2846  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2847  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2848  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2849    
2850  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2851  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2852  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2853    
2854  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2855  #  #
2856    # OPTFILE="$OPTFILE"
2857    #
2858  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2859  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2860  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1358  cat >>$MAKEFILE <<EOF Line 2865  cat >>$MAKEFILE <<EOF
2865  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2866  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2867  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2868  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2869  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2870  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1367  cat >>$MAKEFILE <<EOF Line 2872  cat >>$MAKEFILE <<EOF
2872  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2873    
2874  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2875  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2876  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2877  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2878  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2879  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2880  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2881    OADTOOLS    = ${OADTOOLS}
2882    
2883  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2884  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1383  EXE_SVD     = ${EXE_SVD} Line 2889  EXE_SVD     = ${EXE_SVD}
2889  ENABLED_PACKAGES = ${ENABLED_PACKAGES}  ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2890  DISABLED_PACKAGES = ${DISABLED_PACKAGES}  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2891    
2892    # These files are created by Makefile
2893    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2894  EOF  EOF
2895    
2896  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2897        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2898    else
2899        echo "EMBEDDED_FILES = " >>$MAKEFILE
2900    fi
2901    
2902    # extract default cpp search path so we can pass it to makedepend
2903    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2904    
2905  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2906  # Unix ln (link)  # Unix ln (link)
2907  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2908  # Dependency generator  # Dependency generator
2909  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2910  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1400  KPP = ${KPP} Line 2913  KPP = ${KPP}
2913  FC = ${FC}  FC = ${FC}
2914  # Fortran compiler  # Fortran compiler
2915  F90C = ${F90C}  F90C = ${F90C}
2916    # C compiler
2917    CC = ${CC}
2918  # Link editor  # Link editor
2919  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2920    
2921  # Defines for CPP  # Defines for CPP
2922  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2923  # Includes for CPP  # Includes for CPP
2924  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2925    # default CPP includes for makedepend
2926    CPPINCLUDES = ${CPPINCLUDES}
2927  # Flags for KPP  # Flags for KPP
2928  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2929  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2930  # Optim./debug for FC  # Optim./debug for FC
2931  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
2932  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2933  # Optim./debug for FC  # Optim./debug for FC
2934  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2935  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2936    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2937  # Flags for CC  # Flags for CC
2938  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2939  # Files that should not be optimized  # Files that should not be optimized
2940  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2941  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2942  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2943  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2944  # Name of the Mekfile  # Name of the makefile
2945  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2946    # Name of the make program
2947    MAKE = ${MAKE}
2948    
2949  EOF  EOF
2950    
2951  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2952  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2953  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2954  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2955  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2956  echo               >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2957  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
2958  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2959    
2960  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  echo >> $MAKEFILE
2961  rm -f ad_flow_files.inc  
2962    # add definitions for preprocessed sources
2963    # and note that not all systems allow case sensitive extensions
2964    # hence the $FS and $FS90 here.
2965    # for fixed format f90 files we use ff90 or FF90 resp
2966    # but these are not expected to be the original source files
2967    
2968    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2969    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2970    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2971    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2972    echo >> $MAKEFILE
2973    echo '.SUFFIXES:' >> $MAKEFILE
2974    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2975    
2976  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2977    
2978  .SUFFIXES:  all: fwd_exe_target
2979  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2980            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2981            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2982            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2983            @-rm -f ad_config.template
2984            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2985    
2986  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
 \$(EXECUTABLE): links \$(OBJFILES)  
2987          @echo Creating \$@ ...          @echo Creating \$@ ...
2988          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2989    
2990  depend:  depend:
2991          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2992          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2993          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2994            -rm -f makedepend.out
2995    
2996    lib: libmitgcmuv.a
2997    
2998  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) ${PACKAGES_DOT_H} AD_CONFIG.h  libmitgcmuv.a: \$(OBJFILES)
2999            ar rcv libmitgcmuv.a \$(OBJFILES)
3000            ar d   libmitgcmuv.a main.o
3001    
3002  small_f: \$(F77FILES) \$(F90FILES)  obj: \$(OBJFILES)
3003    
3004  output.txt: \$(EXECUTABLE)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
3005    
3006    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
3007    
3008    # remove most of the files that "make" generates
3009  clean:  clean:
3010          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
3011            -rm -rf *.o
3012            -rm -rf *.$FS *.flowdir
3013            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
3014    
3015    # remove most of the files that "make" and "make depend" generate
3016  Clean:  Clean:
3017          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3018          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3019          -rm -f ${PACKAGES_DOT_H} AD_CONFIG.h          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3020          -rm -f Makefile.bak genmake_state genmake_*optfile genmake_warnings make.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3021    
3022    # remove also the executable, files that "genmake2" generates (except Makefile)
3023    #         and output from a run (plus log files from testreport)
3024  CLEAN:  CLEAN:
3025          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3026            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3027            -rm -f $LOGFILE genmake_state genmake_*optfile
3028            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3029            -rm -rf mpi_headers mnc_test_*
3030          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3031          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3032          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3033          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3034            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3035            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3036            -rm -f oad_cp.[0-9][0-9][0-9].?????
3037    
 #eh3 Makefile: makefile  
3038  makefile:  makefile:
3039          $THIS_SCRIPT $@          $THIS_SCRIPT $G2ARGS
3040  cleanlinks:  cleanlinks:
3041          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3042    
3043  # Special targets  # Special targets (SPECIAL_FILES) which are created by make
3044  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3045          @echo Creating \$@ ...          @echo Creating \$@ ...
3046          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3047  AD_CONFIG.h:  AD_CONFIG.h:
3048          @echo Creating \$@ ...          @echo Creating \$@ ...
3049          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3050    FC_NAMEMANGLE.h:
3051            @echo Creating \$@ ...
3052            echo "$FC_NAMEMANGLE" > \$@
3053    
3054    BUILD_INFO.h:
3055            @echo Creating \$@ ...
3056    EOF
3057    
3058    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3059    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3060    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3061    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3062    
3063    if test "x$EMBED_SRC" = xt ; then
3064        cat >>$MAKEFILE <<EOF
3065    
3066    decode_files.o : EMBEDDED_FILES.h
3067    
3068    ##  \$(F77_PP_SRC_FILES)
3069    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3070            @echo Creating \$@ ...
3071            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3072            -rm -f all_fF.tar.gz
3073            -gzip all_fF.tar
3074    
3075    EMBEDDED_FILES.h : all_fF.tar.gz
3076            @echo Creating \$@ ...
3077            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3078    
3079    EOF
3080    fi
3081    
3082    cat >>$MAKEFILE <<EOF
3083    
3084    # The normal chain of rules is (  .F - .$FS - .o  )
3085    
3086    ## This nullifies any default implicit rules concerning these two file types:
3087    ## %.o : %.F
3088    
3089    # C preprocessing and replacing the _d in constants:
3090    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3091    
3092  # The normal chain of rules is (  .F - .f - .o  )  .F.$FS:
3093  .F.f:          \$(CPPCMD)  > \$@
3094          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@  .$FS.o:
 .f.o:  
3095          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3096  .F90.f90:  .F.o:
3097          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3098  .f90.o:  .F90.$FS90:
3099            \$(CPPCMD)  > \$@
3100    .FF90.f$FS90:
3101            \$(CPPCMD)  > \$@
3102    .$FS90.o:
3103          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3104    .f$FS90.o:
3105            cp \$< \$(basename  \$<).f90
3106            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3107  .c.o:  .c.o:
3108          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3109    .flow.flowdir:
3110            \$(CPPCMD) > \$@
3111    
3112  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3113  .F.p:  .F.p:
3114          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3115  .p.f:  .p.$FS:
3116          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3117    
3118    EOF
3119    
3120  #=========================================  #=========================================
3121  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3122    #===  for TAMC/TAF  ======================
3123    
3124    if test "x$OPENAD" = x ; then
3125    
3126    cat >>$MAKEFILE <<EOF
3127    
3128  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3129  TAF            = ${TAF}  TAF            = ${TAF}
3130    
3131  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3132  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3133    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3134    
3135  EOF  EOF
3136    
# Line 1525  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3139  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3139  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3140  for i in $ad_vars ; do  for i in $ad_vars ; do
3141      name=$i      name=$i
3142      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3143      eval $t1      eval $t1
3144      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3145      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3146  done  done
3147    
3148  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3149  echo >> $MAKEFILE  echo >> $MAKEFILE
3150  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3151  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3152  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3153      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3154      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3155  done  done
3156  echo >> $MAKEFILE  echo >> $MAKEFILE
3157  rm -f ad_files  rm -f $TMP.adSrcFiles
3158    
3159    if test $CAT_SRC_FOR_TAF = 0 ; then
3160    cat >>$MAKEFILE <<EOF
3161    
3162    # ... Utilities ...
3163    remove_comments:
3164            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3165            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3166    adj_sed:
3167            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3168            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3169    ftl_sed:
3170            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3171            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3172    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3173    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3174    EOF
3175    fi
3176    
3177  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3178    
3179  # ... AD ...  # ... AD ...
3180  adall: ad_taf  adall: ad_exe_target
3181  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3182  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3183    
3184    ad_exe_target:
3185            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3186            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3187            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3188            @-rm -f ad_config.template
3189            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3190    
3191  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3192          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3193          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3194          -rm -f ad_config.template          @-rm -f ad_config.template
3195          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3196          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3197          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
   
 ad_taf_output.f: ad_input_code.f  
         \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f  
3198    
3199  adtafonly:  adtafonly:
3200          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3201          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f          ls -l ad_input_code_ad.$FS
3202            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3203    
3204    EOF
3205    
3206    if test $CAT_SRC_FOR_TAF = 1 ; then
3207    cat >>$MAKEFILE <<EOF
3208    # ... send 1 file to TAF ...
3209    ad_taf_output.$FS: ad_input_code.$FS
3210            @-rm -f ad_input_code_ad.$FS ; echo ''
3211            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3212            ls -l ad_input_code_ad.$FS
3213            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3214    
3215  ad_taf: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3216          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3217    
3218  ad_tamc_output.f: ad_input_code.f  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f  
3219    
3220  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
3221          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3222    else
3223    cat >>$MAKEFILE <<EOF
3224    # ... send multiple files to TAF ...
3225    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3226            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3227            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3228            @-rm -f ad_config.template
3229            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3230            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3231            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3232            \$(MAKE) -f \$(MAKEFILE) remove_comments
3233            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3234            \$(MAKE) -f \$(MAKEFILE) adj_sed
3235            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3236    
3237    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3238            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3239            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3240    
3241    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3242            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3243    
3244    EOF
3245    fi
3246    
3247    cat >>$MAKEFILE <<EOF
3248    adonlyfwd:
3249            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3250    
3251    adtrick:
3252            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3253    
3254    ad_tamc_output.$FS: ad_input_code.$FS
3255            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3256            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3257    
3258    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3259            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3260    
3261  # ... FTL ...  # ... FTL ...
3262  ftlall: ftl_taf  ftlall: ftl_exe_target
3263  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3264  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3265    
3266  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3267          @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3268          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3269          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3270          @make \$(F77FILES)          @-rm -f ad_config.template
3271          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3272          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f  
3273    ftl_input_code.$FS: \$(AD_FILES)
3274  ftl_taf_output.f: ftl_input_code.f          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3275          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3276          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          @-rm -f ad_config.template
3277            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3278            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3279            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3280    
3281  ftltafonly:  ftltafonly:
3282          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3283          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f          ls -l ftl_input_code_tl.$FS
3284            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3285    
3286  ftl_taf: ftl_taf_output.o \$(OBJFILES)  EOF
3287          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  
3288    if test $CAT_SRC_FOR_TAF = 1 ; then
3289    cat >>$MAKEFILE <<EOF
3290    # ... send 1 file to TAF ...
3291    ftl_taf_output.$FS: ftl_input_code.$FS
3292            @-rm -f ftl_input_code_tl.$FS ; echo ''
3293            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3294            ls -l ftl_input_code_tl.$FS
3295            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3296    
3297  ftl_tamc_output.f: ftl_input_code.f  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3298          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
         cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f  
3299    
3300  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  EOF
3301          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)  
3302    else
3303    cat >>$MAKEFILE <<EOF
3304    # ... send multiple files to TAF ...
3305    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3306            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3307            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3308            @-rm -f ad_config.template
3309            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3310            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3311            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3312            \$(MAKE) -f \$(MAKEFILE) remove_comments
3313            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3314            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3315            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3316    
3317    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3318            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3319            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3320    
3321    EOF
3322    fi
3323    
3324    cat >>$MAKEFILE <<EOF
3325    ftl_tamc_output.$FS: ftl_input_code.$FS
3326            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3327            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3328    
3329    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3330            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3331    
3332  # ... SVD ...  # ... SVD ...
3333  svdtaf: ad_taf_output.f ftl_taf_output.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3334  svdall: svd_taf          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3335            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3336    svdall: svd_touch svd_taf
3337    
3338  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)  svd_taf: \$(OBJFILES)
3339          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3340    
3341            @echo "--->>> Only COMPILE svd code! <<<---"
3342            @echo "--->>> Assumes you previously <<<---"
3343            @echo "--->>> did make svdtaf        <<<---"
3344    
3345    svd_touch:
3346            @echo "--->>> Only COMPILE svd code! <<<---"
3347            @echo "--->>> Assumes you previously <<<---"
3348            @echo "--->>> did make svdtaf        <<<---"
3349            touch ad_taf_output.$FS ftl_taf_output.$FS
3350            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3351            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3352            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3353            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3354            @-rm -f ad_config.template
3355    
3356    EOF
3357    
3358  #=========================================  fi
3359    
3360    #===  for OpenAD  ========================
3361    
3362    if test "x$OPENAD" != x ; then
3363    
3364    # ============ begin OpenAD specific section ==============
3365    
3366    cat >>$MAKEFILE <<EOF
3367    # ... OpenAD ...
3368    
3369    # all the source files linked from the various locations:
3370    ALL_LINKED_FILES= \
3371    \$(F77_SRC_FILES) \
3372    \$(C_SRC_FILES) \
3373    \$(H_SRC_FILES) \
3374    \$(F90_SRC_FILES) \
3375    \$(SPECIAL_FILES)
3376    
3377    ifndef OPENADROOT
3378      \$(error "Error:  environment variable OPENADROOT not defined!")
3379    endif
3380    
3381    ifndef XAIFSCHEMAROOT
3382      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3383    endif
3384    
3385    ifndef XAIFBOOSTERROOT
3386      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3387    endif
3388    
3389    EOF
3390    
3391    echo "  Add the source list for common block to module conversion "
3392    echo >> $MAKEFILE
3393    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3394    for i in `cat ${OAD_CB2M_FILES}` ; do
3395      echo    " \\" >> $MAKEFILE
3396      printf " $i" >> $MAKEFILE
3397    done
3398    echo >> $MAKEFILE
3399    
3400    echo "  Add the source list for AD code generation"
3401    echo >> $MAKEFILE
3402    printf "AD_FILES = " >> $MAKEFILE
3403    for i in `cat ${OAD_CB2M_FILES}` ; do
3404      echo    " \\" >> $MAKEFILE
3405      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3406    done
3407    AD_FILES=`cat $TMP.adSrcFiles`
3408    for i in $AD_FILES ; do
3409      basename=${i%%.f}
3410      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3411      if test -z "$toBeIgnored" ; then
3412        echo    " \\" >> $MAKEFILE
3413        printf " $i" >> $MAKEFILE
3414      fi
3415    done
3416    echo >> $MAKEFILE
3417    rm -f $TMP.adSrcFiles
3418    
3419    cat >>$MAKEFILE <<EOF
3420    
3421    adAll: ad_exe_target
3422    .PHONY: adAll
3423    
3424    ad_exe_target:
3425            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3426            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3427            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3428            @-rm -f ad_config.template
3429            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3430    
3431    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3432    
3433    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3434    
3435    .PHONY: adDepend
3436    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3437            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3438            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3439            -rm -f makedepend.out
3440    
3441    OPENAD_SUPPORT_F90_SRC_FILES = \
3442    w2f__types.F90 \
3443    OAD_active.F90 \
3444    OAD_cp.F90 \
3445    OAD_rev.F90 \
3446    OAD_tape.F90 \
3447    OAD_regular_cp.F90 \
3448    revolve.F90
3449    
3450    OPENAD_SUPPORT_C_SRC_FILES = \
3451    iaddr.c \
3452    timeRatio.c
3453    
3454    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3455            cat \$^ > \$@
3456    
3457    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3458            cat \$^ > \$@
3459    
3460    f95_test.out: f95_test_mods.f90 f95_test.f90
3461            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3462            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3463    
3464    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3465    
3466    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3467    
3468    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3469    
3470    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3471            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3472    
3473    # create sources files modules from header files containing common blocks
3474    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3475            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3476    
3477    # create new header files with USE statements for the new modules made above
3478    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3479            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3480    
3481    # change the include directives of everybody to refer to  the new header files with the USE statements
3482    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3483            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3484    
3485    # makefile debug rule
3486    small_f: \$(CB2M_F90_PP_SRC_FILES)
3487    .PHONY: small_f
3488    
3489    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3490            cat \$^ > \$@
3491    
3492    # canonicalizer
3493    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3494            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3495    
3496    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3497    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3498            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3499    
3500    # F -> WHIRL
3501    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3502            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3503    
3504    # WHIRL -> XAIF
3505    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3506            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3507    
3508    # XAIF -> XAIF'
3509    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3510            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3511    
3512    # XAIF' -> WHIRL'
3513    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3514            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3515    
3516    # WHIRL' -> F'
3517    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3518            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3519    
3520    # insert template directives
3521    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3522            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3523    
3524    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3525    # postprocess F'
3526    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3527            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3528            # the target is a placeholder to trigger a single execution of the rule
3529            touch \$@
3530    # put this so make knows about the postprocessing output
3531    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3532    
3533    # link the XAIF schema files
3534    %.xsd:
3535            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3536    
3537    # link the support files:
3538    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3539            \$(LN) \${OADTOOLS}/\$@ .
3540    
3541    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3542    
3543    # ============ end OpenAD specific section ==============
3544    
3545  EOF  EOF
3546    
3547    fi
3548    
3549    #=========================================
3550    
3551  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3552      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3553  fi  fi
# Line 1631  for i in $KPPFILES ; do Line 3559  for i in $KPPFILES ; do
3559      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3560          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3561      fi      fi
3562      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3563  done  done
3564    
3565  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1641  for i in $NOOPTFILES ; do Line 3569  for i in $NOOPTFILES ; do
3569      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3570          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3571      fi      fi
3572      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3573      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3574  done  done
3575    
3576  echo "  Add rules for links"  echo "  Add rules for links"