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revision 1.8 by edhill, Tue Sep 23 15:53:02 2003 UTC revision 1.47 by adcroft, Tue Nov 25 14:57:45 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #!/bin/sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1
17        RETVAL=$?
18        if test "x${RETVAL}" = x0 ; then
19            echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"
20            exit 99
21        fi
22        grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1
23        RETVAL=$?
24        if test "x${RETVAL}" = x0 ; then
25            echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"
26            exit 99
27        fi
28        grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1
29        RETVAL=$?
30        if test "x${RETVAL}" = x0 ; then
31            echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"
32            exit 99
33        fi
34        grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1
35        RETVAL=$?
36        if test "x${RETVAL}" = x0 ; then
37            echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"
38            exit 99
39       fi
40    }
41    
42    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
43    # the package list.
44    expand_pkg_groups() {
45        new_packages=
46        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
47        if test -r $PKG_GROUPS ; then
48            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
49            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
50            matched=0
51            for i in $PACKAGES ; do
52                line=`grep "^ *$i" ./p2.tmp`
53                RETVAL=$?
54                if test "x$RETVAL" = x0 ; then
55                    matched=1
56                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
57                    echo "    replacing \"$i\" with: $replace"
58                    new_packages="$new_packages $replace"
59                else
60                    new_packages="$new_packages $i"
61                fi
62            done
63            PACKAGES=$new_packages
64            rm -f ./p[1,2].tmp
65        else
66            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
67        fi
68    }
69    
70  # Guess possible config options for this host  # Guess possible config options for this host
71  find_possible_configs()  {  find_possible_configs()  {
72    
73      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
74      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
75      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
76        PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
77      p_LN=      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
78        echo "  The platform appears to be:  $PLATFORM"
79        
80      echo "test" > test      echo "test" > test
81      ln -s ./test link      ln -s ./test link
82      RETVAL=$?      RETVAL=$?
83      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
84          p_LN="ln -s"          LN="ln -s"
85        else
86            echo "Error: \"ln -s\" does not appear to work on this system!"
87            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
88            exit 1
89      fi      fi
90      rm -f test link      rm -f test link
91    
92      p_CPP=`which cpp`      if test "x$CPP" = x ; then
93                CPP="cpp -traditional -P"
94      RETVAL=$?      fi
95      if test "x${RETVAL}" = x0 ; then  
96          p_LN="ln -s"      # makedepend is not always available
97        if test "x${MAKEDEPEND}" = x ; then
98          which makedepend >& /dev/null
99          RETVAL=$?
100          if test "x${RETVAL}" = x1 ; then
101             echo "    makedepend was not found. Using xmakedpend instead."
102             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
103          fi
104      fi      fi
     rm -f test link  
105    
106      # look for possible fortran compilers      # look for possible fortran compilers
107        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
108      p_FC=      p_FC=
109      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      for c in $tmp ; do
110          which $c > /dev/null 2>&1          rm -f ./hello.f ./hello
111            cat >> hello.f <<EOF
112          program hello
113          do i=1,3
114            print *, 'hello world : ', i
115          enddo
116          end
117    EOF
118            $c -o hello hello.f > /dev/null 2>&1
119          RETVAL=$?          RETVAL=$?
120          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
121              p_FC="$p_FC $c"              p_FC="$p_FC $c"
122          fi          fi
123      done      done
124      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./hello.f ./hello
125      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
126          echo "  None found!!!"          cat 1>&2 <<EOF
127    
128    Error: No Fortran compilers were found in your path.  Please specify one using:
129    
130        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
131        2) a command-line option (eg. "-fc NAME"), or
132        3) the MITGCM_FC environment variable.
133    
134    EOF
135            exit 1
136      else      else
137          echo "  "$p_FC          echo "  The possible FORTRAN compilers found in your path are:"
138            echo "   "$p_FC
139            if test "x$FC" = x ; then
140                FC=`echo $p_FC | $AWK '{print $1}'`
141            fi
142      fi      fi
143    
144      # look for possible MPI libraries      for i in $p_FC ; do
145      mpi_libs=          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
146      mpi_fort=`which mpif77 2>/dev/null`          if test -r $p_OF ; then
147      RETVAL=$?              OPTFILE=$p_OF
148      if test "x${RETVAL}" = x0 ; then              echo "  The options file:  $p_OF"
149          cat >>test.f <<EOF              echo "    appears to match so we'll use it."
150        PROGRAM HELLO              break
       DO 10, I=1,10  
       PRINT *,'Hello World'  
    10 CONTINUE  
       STOP  
       END  
 EOF  
         eval "$mpi_fort -showme test.f > out"  
         RETVAL=$?  
         if test "x${RETVAL}" = x0 ; then  
             a=`cat out`  
             for i in $a ; do  
                 case $i in  
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
151          fi          fi
152          rm -f test.f out      done
153        if test "x$OPTFILE" = x ; then
154            cat 1>&2 <<EOF
155    
156    Error: No options file was found in:  $ROOTDIR/tools/build_options/
157      that matches this platform ("$PLATFORM") and the compilers found in
158      your path.  Please specify an "optfile" using:
159    
160        1) the command line (eg. "-optfile=path/to/OPTFILE"), or
161        2) the MITGCM_OF environment variable.
162    
163      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
164    
165    EOF
166            exit 1
167      fi      fi
168        
169    #     # look for possible MPI libraries
170    #     mpi_libs=
171    #     mpi_fort=`which mpif77 2>/dev/null`
172    #     RETVAL=$?
173    #     if test "x${RETVAL}" = x0 ; then
174    #       cat >>test.f <<EOF
175    #       PROGRAM HELLO
176    #       DO 10, I=1,10
177    #       PRINT *,'Hello World'
178    #    10 CONTINUE
179    #       STOP
180    #       END
181    # EOF
182    #       eval "$mpi_fort -showme test.f > out"
183    #       RETVAL=$?
184    #       if test "x${RETVAL}" = x0 ; then
185    #           a=`cat out`
186    #           for i in $a ; do
187    #               case $i in
188    #                   -*)
189    #                       mpi_libs="$mpi_libs $i" ;;
190    #               esac
191    #           done
192    #           echo "The MPI libs appear to be:"
193    #           echo "  "$mpi_libs
194    #       fi
195    #       rm -f test.f out
196    #     fi
197    
198  }  }
199    
# Line 86  get_pdepend_list()  { Line 203  get_pdepend_list()  {
203      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
204      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
205      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
206          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
207          > ./.pd_tmp          > ./.pd_tmp
208      source ./.pd_tmp      . ./.pd_tmp
209      rm -f ./.pd_tmp      rm -f ./.pd_tmp
210    
211      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 97  get_pdepend_list()  { Line 214  get_pdepend_list()  {
214    
215  #  Explain usage  #  Explain usage
216  usage()  {  usage()  {
217      echo  cat <<EOF
218      echo "Usage: "$0" [OPTIONS]"  
219      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
220      echo    where [OPTIONS] can be:
221      echo "    -help | --help | -h | --h"  
222      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
223      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
224      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
225      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
226      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
227      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
228      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
229      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
230      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
231      echo "    -makefile NAME | -mf NAME"  
232      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
233      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
234      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
235      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
236      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
237      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
238      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
239      echo "    -disable NAME | --disable NAME"  
240      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
241      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
242      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
243      echo "    -noopt NAME | --noopt NAME"            many platforms, "gmake" is the preferred choice.
244      echo "      -noopt=NAME | --noopt=NAME"  
245  #    echo "    -cpp NAME | --cpp NAME"      -makefile NAME | -mf NAME
246  #    echo "      -cpp=NAME | --cpp=NAME"        --makefile=NAME | -mf=NAME
247      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"            Call the makefile "NAME".  The default is "Makefile".
248      echo "      -fc=NAME | --fc=NAME"  
249      echo "    -[no]ieee | --[no]ieee"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
250      echo "    -[no]mpi | --[no]mpi"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
251      echo "    -[no]jam | --[no]jam"            Specify the location of the MITgcm ROOTDIR as "NAME".
252      echo            By default, genamke will try to find the location by
253      echo "  and NAME is a string such as:"            looking in parent directories (up to the 5th parent).
254      echo  
255      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
256      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
257      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            Here, "NAME" specifies a list of directories that are
258      echo            used for additional source code.  Files found in the
259      echo "  which, depending upon your shell, may need to be single-quoted"            "mods list" are given preference over files of the same
260      echo "  if it contains spaces, dashes, or other special characters."            name found elsewhere.
261    
262        -disable NAME | --disable NAME
263          -disable=NAME | --disable=NAME
264              Here "NAME" specifies a list of packages that we don't
265              want to use.  If this violates package dependencies,
266              genamke will exit with an error message.
267    
268        -enable NAME | --enable NAME
269          -enable=NAME | --enable=NAME
270              Here "NAME" specifies a list of packages that we wish
271              to specifically enable.  If this violates package
272              dependencies, genamke will exit with an error message.
273    
274        -standarddirs NAME | --standarddirs NAME
275          -standarddirs=NAME | --standarddirs=NAME
276              Here, "NAME" specifies a list of directories to be
277              used as the "standard" code.
278    
279        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
280          -fc=NAME | --fc=NAME
281              Use "NAME" as the fortran compiler.  By default, genmake
282              will search for a working compiler by trying a list of
283              "usual suspects" such as g77, f77, etc.
284    
285        -[no]ieee | --[no]ieee
286              Do or don't use IEEE numerics.  Note that this option
287              *only* works if it is supported by the OPTFILE that
288              is being used.
289    
290      While it is most often a single word, the "NAME" variables specified
291      above can in many cases be a space-delimited string such as:
292    
293        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
294        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
295        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
296    
297      which, depending upon your shell, may need to be single-quoted.
298    
299      For more detailed genmake documentation, please see:
300    
301        http://mitgcm.org/devel_HOWTO/
302    
303    EOF
304    
305      exit 1      exit 1
306  }  }
307    
308  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
309  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
310  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
311  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
312  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
313  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
314  #eh3 set LINK       = $FC  EOF
315  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
316  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
317  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
318  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
319  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
320  #eh3 set KFLAGS1    = (  )  
321  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
322  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
323  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
324  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
325  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
326        fi
327        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
328        RETVAL=$?
329        if test "x$RETVAL" != x0 ; then
330            FC_NAMEMANGLE=$default_nm
331            cat <<EOF>> genmake_warnings
332    
333    WARNING: The "nm" command failed.
334    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
335    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
336    EOF
337            return 1
338        fi
339        cat > genmake_tcomp.f <<EOF
340          subroutine tcall( string )
341          character*(*) string
342          call tsub( string )
343          end
344    EOF
345        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
346        RETVAL=$?
347        if test "x$RETVAL" != x0 ; then
348            FC_NAMEMANGLE=$default_nm
349            cat <<EOF>> genmake_warnings
350    
351    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
352    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
353    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
354    EOF
355            return 1
356        fi
357        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
358        RETVAL=$?
359        if test "x$RETVAL" != x0 ; then
360            FC_NAMEMANGLE=$default_nm
361            cat <<EOF>> genmake_warnings
362    
363    WARNING: The "nm" command failed.
364    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
365    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
366    EOF
367            return 1
368        fi
369    
370        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
371        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
372        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
373        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
374    
375        nmangle="X"
376        if test "x$c_a" != "x$f_a" ; then
377            comm="echo x$f_a | sed -e 's|x$c_a||'"
378            a=`eval $comm`
379            nmangle="$a ## $nmangle"
380        fi
381        if test "x$c_b" != "x$f_b" ; then
382            comm="echo x$f_b | sed -e 's|x$c_b||'"
383            b=`eval $comm`
384            nmangle="$nmangle ## $b"
385        fi
386    
387        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
388    
389        #  cleanup the testing files
390        rm -f genmake_tcomp.* genmake_test.*
391    }
392    
393    
394    check_HAVE_CLOC()  {
395        get_fortran_c_namemangling
396        cat <<EOF > genmake_tc_1.c
397    $FC_NAMEMANGLE
398    #include <stdio.h>
399    #include <stdlib.h>
400    #include <unistd.h>
401    #include <assert.h>
402    #include <sys/time.h>
403    void FC_NAMEMANGLE(cloc) ( double *curtim )
404    {
405     struct timeval tv1;
406     gettimeofday(&tv1 , (void *)NULL );
407     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
408     *curtim = *curtim/1.E6;
409    }
410    EOF
411        make genmake_tc_1.o >> genmake_tc.log 2>&1
412        RET_C=$?
413        cat <<EOF > genmake_tc_2.f
414          program hello
415          Real*8 wtime
416          external cloc
417          call cloc(wtime)
418          print *," HELLO WORLD", wtime
419          end program hello
420    EOF
421        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
422        RET_F=$?
423        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
424        RETVAL=$?
425        if test "x$RETVAL" = x0 ; then
426            HAVE_CLOC=t
427            DEFINES="$DEFINES -DHAVE_CLOC"
428        fi
429        rm -f genmake_tc*
430    }
431    
432    
433  #  Set defaults here  #  Set defaults here
434  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 172  S64= Line 439  S64=
439  KPP=  KPP=
440  FC=  FC=
441  LINK=  LINK=
442    # DEFINES="-DWORDLENGTH=4"
443    DEFINES=
444  PACKAGES=  PACKAGES=
445  ENABLE=  ENABLE=
446  DISABLE=  DISABLE=
447  MAKEFILE=  MAKEFILE=
448  MAKEDEPEND=  MAKEDEPEND=
449  PDEPEND=  PDEPEND=
450  DUMPSTATE=f  DUMPSTATE=t
451  PDEFAULT=  PDEFAULT=
452  OPTFILE=  OPTFILE=
453  INCLUDES="-I."  INCLUDES="-I."
# Line 192  KPPFILES= Line 461  KPPFILES=
461  NOOPTFILES=  NOOPTFILES=
462  NOOPTFLAGS=  NOOPTFLAGS=
463    
464    # DEFINES checked by test compilation
465    HAVE_SYSTEM=
466    HAVE_FDATE=
467    FC_NAMEMANGLE=
468    HAVE_CLOC=
469    
470  MODS=  MODS=
471  TOOLSDIR=  TOOLSDIR=
472  SOURCEDIRS=  SOURCEDIRS=
473  INCLUDEDIRS=  INCLUDEDIRS=
474    STANDARDDIRS=
475    
476  PWD=`pwd`  PWD=`pwd`
477  MAKE=make  MAKE=make
478    AWK=awk
479  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
480  THISCWD=`pwd`  THISCWD=`pwd`
481  THISDATE=`date`  THISDATE=`date`
# Line 206  MACHINE=`uname -a` Line 483  MACHINE=`uname -a`
483  EXECUTABLE=  EXECUTABLE=
484  EXEHOOK=  EXEHOOK=
485  EXEDIR=  EXEDIR=
486    PACKAGES_CONF=
487    IEEE=
488    if test "x$MITGCM_IEEE" != x ; then
489        IEEE=$MITGCM_IEEE
490    fi
491    
492    AUTODIFF_PKG_USED=f
493    AD_OPTFILE=
494    TAF=
495    AD_TAF_FLAGS=
496    FTL_TAF_FLAGS=
497    SVD_TAF_FLAGS=
498    TAF_EXTRA=
499    TAMC=
500    AD_TAMC_FLAGS=
501    FTL_TAF_FLAGS=
502    SVD_TAMC_FLAGS=
503    TAMC_EXTRA=
504    
505    
506  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
507  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
508  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
509    
510  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
511  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
512  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
513  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
514  gm_s6="EXECUTABLE EXEHOOK EXEDIR"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
515    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
516    
517  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
518    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
519    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
520    gm_s12="TAF_EXTRA TAMC_EXTRA"
521    
522    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
523    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
524    
525    cat <<EOF
526    
527    GENMAKE :
528    
529    A program for GENerating MAKEfiles for the MITgcm project.  For a
530    quick list of options, use "genmake -h" or for more detail see:
531    
532      http://mitgcm.org/devel_HOWTO/
533    
534    EOF
535    
 echo  
536  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
537  gm_local="./gm_local"  gm_local="genmake_local"
538    for i in . $MODS ; do
539        if test -r $i/$gm_local ; then
540            . $i/$gm_local
541            break
542        fi
543    done
544  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
545  if test -e $gm_local ; then  if test -e $gm_local ; then
546      echo "using $gm_local"      echo "using $gm_local"
547      source $gm_local      . $gm_local
548      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
549      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
550  else  else
# Line 244  fi Line 562  fi
562  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
563  #done  #done
564  #parse_options  #parse_options
   
565  ac_prev=  ac_prev=
566  for ac_option ; do  for ac_option ; do
567    
# Line 269  for ac_option ; do Line 586  for ac_option ; do
586          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
587              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
588                    
589            -adoptfile | --adoptfile | -ad | --ad)
590                ac_prev=AD_OPTFILE ;;
591            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
592                AD_OPTFILE=$ac_optarg ;;
593            
594          -pdepend | --pdepend)          -pdepend | --pdepend)
595              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
596          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 289  for ac_option ; do Line 611  for ac_option ; do
611          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
612              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
613                    
614          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
615              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
616          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
617              PLATFORM=$ac_optarg ;;              echo
618                usage
619                ;;
620                    
621          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
622              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 314  for ac_option ; do Line 638  for ac_option ; do
638          -enable=* | --enable=*)          -enable=* | --enable=*)
639              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
640                    
641          -noopt | --noopt)          -standarddirs | --standarddirs)
642              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
643          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
644              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
645            
646  #           -cpp | --cpp)  #           -cpp | --cpp)
647  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
648  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 330  for ac_option ; do Line 654  for ac_option ; do
654              FC=$ac_optarg ;;              FC=$ac_optarg ;;
655                    
656          -ieee | --ieee)          -ieee | --ieee)
657              IEEE=1 ;;              IEEE=true ;;
658          -noieee | --noieee)          -noieee | --noieee)
659              IEEE=0 ;;              IEEE= ;;
660                    
661          -mpi | --mpi)  #       -jam | --jam)
662              MPI=1 ;;  #           JAM=1 ;;
663          -nompi | --nompi)  #       -nojam | --nojam)
664              MPI=0 ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
665                    
666          -ds | --ds)          -ds | --ds)
667              DUMPSTATE=t ;;              DUMPSTATE=t ;;
668                    
669            -taf_extra | --taf_extra)
670                ac_prev=TAF_EXTRA ;;
671            -taf_extra=* | --taf_extra=*)
672                TAF_EXTRA=$ac_optarg ;;
673    
674            -tamc_extra | --tamc_extra)
675                ac_prev=TAMC_EXTRA ;;
676            -tamc_extra=* | --tamc_extra=*)
677                TAMC_EXTRA=$ac_optarg ;;
678    
679          -*)          -*)
680              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
681              usage              usage
# Line 361  for ac_option ; do Line 690  for ac_option ; do
690            
691  done  done
692    
693    if test -f ./.genmakerc ; then
694        echo
695        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
696        echo "  file.  This file format is no longer supported.  Please see:"
697        echo
698        echo "    http://mitgcm.org/devel_HOWTO/"
699        echo
700        echo "  for directions on how to setup and use the new \"genmake2\" input"
701        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
702        echo
703    fi
704    
705    if test "x${ROOTDIR}" = x ; then
706        if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
707            ROOTDIR=".."
708        else
709            for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
710                if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
711                    ROOTDIR=$d
712                    echo -n "Warning:  ROOTDIR was not specified but there appears to be"
713                    echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
714                    break
715                fi
716            done
717        fi
718    fi
719    if test "x${ROOTDIR}" = x ; then
720        echo "Error: Cannot determine ROOTDIR for MITgcm code."
721        echo "  Please specify a ROOTDIR using either an options "
722        echo "  file or a command-line option."
723        exit 1
724    fi
725    if test ! -d ${ROOTDIR} ; then
726        echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
727        exit 1
728    fi
729    
730  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
731  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
732      echo "Warning: no OPTFILE specified so we'll look for possible settings"      if test "x$MITGCM_OF" = x ; then
733      printf "\n===  Searching for possible settings for OPTFILE  ===\n"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
734      find_possible_configs          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
735  else          find_possible_configs
     if test "x$OPTFILE" = xNONE ; then  
         echo "    OPTFILE=NONE so we'll try to use default settings"  
736      else      else
737          if test -f "$OPTFILE" -a -r "$OPTFILE" ; then          OPTFILE=$MITGCM_OF
738              echo "    using OPTFILE=\"$OPTFILE\""      fi
739              source "$OPTFILE"  fi
740              RETVAL=$?  if test "x$OPTFILE" != xNONE ; then
741              if test "x$RETVAL" != x0 ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
742                  echo -n "Error: failed to source OPTFILE \"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
743                  echo "--please check that variable syntax is bash-compatible"          . "$OPTFILE"
744                  exit 1          RETVAL=$?
745              fi          if test "x$RETVAL" != x0 ; then
746              if test "x$DUMPSTATE" != xf ; then              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
747                  cp -f $OPTFILE "gm_optfile"              echo "--please check that variable syntax is bash-compatible"
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
748              exit 1              exit 1
749          fi          fi
750            if test "x$DUMPSTATE" != xf ; then
751                cp -f $OPTFILE "genmake_optfile"
752            fi
753        else
754            echo "Error: can't read OPTFILE=\"$OPTFILE\""
755            exit 1
756      fi      fi
757  fi  fi
758    
759  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
760  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
761        if test "x$MITGCM_AD_OF" = x ; then
762            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
763        else
764            AD_OPTFILE=$MITGCM_AD_OF
765        fi
766    fi
767    if test "x${AD_OPTFILE}" != xNONE ; then
768        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
769            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
770            . "$AD_OPTFILE"
771            RETVAL=$?
772            if test "x$RETVAL" != x0 ; then
773                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
774                echo "--please check that variable syntax is bash-compatible"
775                exit 1
776            fi
777            if test "x$DUMPSTATE" != xf ; then
778                cp -f $AD_OPTFILE "genmake_ad_optfile"
779            fi
780        else
781            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
782            exit 1
783        fi
784    fi
785    
786    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
787    #  either set defaults or complain and abort!
788  if test "x$FC" = x ; then  if test "x$FC" = x ; then
789      cat <<EOF 1>&2      cat <<EOF 1>&2
790    
791  Error: no Fortran compiler: please specify using one of the following:  Error: no Fortran compiler: please specify using one of the following:
792    1) within the options file ("FC=...") as specified by "-of=OPTFILE"    1) within the options file ("FC=...") as specified by "-of=OPTFILE"
793    2) the "-fc=XXX" command-line option    2) the "-fc=XXX" command-line option
794    3) the "./gm_local" file    3) the "./genmake_local" file
795  EOF  EOF
796      exit 1      exit 1
797  fi  fi
# Line 405  if test "x$LINK" = x ; then Line 799  if test "x$LINK" = x ; then
799      LINK=$FC      LINK=$FC
800  fi  fi
801  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
802        CPP="cpp"
803    fi
804    if test "x$MAKE" = x ; then
805        MAKE="make"
806    fi
807    echo "#define A a" | $CPP > test_cpp 2>&1
808    RETVAL=$?
809    if test "x$RETVAL" != x0 ; then
810      cat <<EOF 1>&2      cat <<EOF 1>&2
811    
812  Error: no C pre-processor: please specify using one of the following:  Error: C pre-processor "$CPP" failed the test case: please specify using:
813    
814    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
815    2) the "./gm_local" file    2) the "./genmake_local" file
816      3) with the CPP environment variable
817    
818  EOF  EOF
819      exit 1      exit 1
820    else
821        rm -f test_cpp
822  fi  fi
823  if test "x$S64" = x ; then  if test "x$MAKEDEPEND" = x ; then
824        MAKEDEPEND=makedepend
825    fi
826    if test "x$LN" = x ; then
827        LN="ln -s"
828    fi
829    echo "test" > genmake_test_ln
830    $LN genmake_test_ln genmake_tlink
831    RETVAL=$?
832    if test "x$RETVAL" != x0 ; then
833      cat <<EOF 1>&2      cat <<EOF 1>&2
834    
835  Error: no C pre-processor: please specify using one of the following:  Error: The command "ln -s" failed -- please specify a working soft-link
836    1) within the options file ("S64=...") as specified by "-of=OPTFILE"    command in the optfile.
837    2) the "./gm_local" file  
838  EOF  EOF
839      exit 1      exit 1
840  fi  fi
841    rm -f genmake_test_ln genmake_tlink
842    
843    
844    printf "\n===  Checking system libraries  ===\n"
845    echo -n "  Do we have the system() command using $FC...  "
846    cat > genmake_tcomp.f <<EOF
847          program hello
848          call system('echo hi')
849          end
850    EOF
851    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
852    RETVAL=$?
853    if test "x$RETVAL" = x0 ; then
854        HAVE_SYSTEM=t
855        DEFINES="$DEFINES -DHAVE_SYSTEM"
856        echo "yes"
857    else
858        HAVE_SYSTEM=
859        echo "no"
860    fi
861    rm -f genmake_tcomp*
862    
863    echo -n "  Do we have the fdate() command using $FC...  "
864    cat > genmake_tcomp.f <<EOF
865          program hello
866          CHARACTER(128) string
867          string = ' '
868          call fdate( string )
869          print *, string
870          end
871    EOF
872    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
873    RETVAL=$?
874    if test "x$RETVAL" = x0 ; then
875        HAVE_FDATE=t
876        DEFINES="$DEFINES -DHAVE_FDATE"
877        echo "yes"
878    else
879        HAVE_FDATE=
880        echo "no"
881    fi
882    rm -f genmake_tcomp*
883    
884    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
885    check_HAVE_CLOC
886    if test "x$HAVE_CLOC" != x ; then
887        echo "yes"
888    else
889        echo "no"
890    fi
891    echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template
892    cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1
893    RETVAL=$?
894    if test "x$RETVAL" != x0 ; then
895        mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h
896    fi
897    rm -f genmake_t*
898    
899    
900  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 446  if test "x${PLATFORM}" = x ; then Line 919  if test "x${PLATFORM}" = x ; then
919      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
920  fi  fi
921    
 if test "x${ROOTDIR}" = x ; then  
     if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then  
         ROOTDIR=".."  
     else  
         for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do  
             if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then  
                 ROOTDIR=$d  
                 echo -n "Warning:  ROOTDIR was not specified but there appears to be"  
                 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."  
                 break  
             fi  
         done  
     fi  
 fi  
 if test "x${ROOTDIR}" = x ; then  
     echo "Error: Cannot determine ROOTDIR for MITgcm code."  
     echo "  Please specify a ROOTDIR using either an options "  
     echo "  file or a command-line option."  
     exit 1  
 fi  
 if test ! -d ${ROOTDIR} ; then  
     echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"  
     exit 1  
 fi  
   
922  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
923      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then
924          EXEDIR=../exe          EXEDIR=../exe
# Line 490  if test ! -d ${TOOLSDIR} ; then Line 938  if test ! -d ${TOOLSDIR} ; then
938      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"
939      exit 1      exit 1
940  fi  fi
941    if test "x$S64" = x ; then
942        S64='$(TOOLSDIR)/set64bitConst.sh'
943    fi
944    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
945    
946  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
947    
# Line 498  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 950  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
950  #  they appear as regular source code  #  they appear as regular source code
951  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
952      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
953      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
954      RETVAL=$?      RETVAL=$?
955      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
956          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 528  echo "  getting package dependency info Line 980  echo "  getting package dependency info
980  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
981  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
982  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
983      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
984      > ./.pd_tmp      > ./.pd_tmp
985  RETVAL=$?  RETVAL=$?
986  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
987      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
988      exit 1      exit 1
989  fi  fi
990  source ./.pd_tmp  . ./.pd_tmp
991  rm -f ./.pd_tmp  rm -f ./.pd_tmp
992    
993  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
994    #  file should eventually be added so that, for convenience, one can
995    #  specify groups of packages using names like "ocean" and "atmosphere".
996    echo "  checking default package list:  "
997    if test "x${PDEFAULT}" = x ; then
998        for i in "." $MODS ; do
999            if test -r $i"/packages.conf" ; then
1000                    PDEFAULT=$i"/packages.conf"
1001                    break
1002            fi
1003        done
1004    fi
1005  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1006      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1007  fi  fi
1008  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1009      echo "default packages file disabled"      echo "    default packages file disabled"
1010  else  else
1011      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1012          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1013      else      else
1014          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1015          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1016          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1017          RETVAL=$?          RETVAL=$?
1018          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1019              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 561  else Line 1023  else
1023          for i in $def ; do          for i in $def ; do
1024              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1025          done          done
1026          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1027            expand_pkg_groups
1028            echo "    after group expansion packages are:  $PACKAGES"
1029      fi      fi
1030  fi  fi
1031    
# Line 580  for p in $PACKAGES ; do Line 1044  for p in $PACKAGES ; do
1044  done  done
1045  PACKAGES="$pack"  PACKAGES="$pack"
1046  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1047  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1048  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1049  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1050      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 671  for i in $PACKAGES ; do Line 1135  for i in $PACKAGES ; do
1135      if test -d $adr ; then      if test -d $adr ; then
1136          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1137          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1138            if test "x$i" = xautodiff ; then
1139                AUTODIFF_PKG_USED=t
1140            fi
1141      else      else
1142          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1143          exit 1          exit 1
1144      fi      fi
1145  done  done
1146    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths="$SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1147    
1148  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1149  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1150  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1151  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1152  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1153  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1154  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1155  all_pack=  all_pack=
1156    DISABLED_PACKAGES=
1157  for n in $names ; do  for n in $names ; do
1158      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1159          has_pack="f"          has_pack="f"
# Line 748  for n in $names ; do Line 1164  for n in $names ; do
1164              fi              fi
1165          done          done
1166          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1167              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1168              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1169          fi          fi
1170      fi      fi
1171  done  done
1172  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1173  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1174      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1175      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1176    #eh3 DEFINES="$DEFINES -D$def"
1177    
1178  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1179      case $i in      case $i in
1180          aim_v23)          aim_v23)
1181              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              DEFINES="$DEFINES -DALLOW_AIM"
1182                ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1183                echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"
1184              ;;              ;;
1185      esac      esac
1186  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1187    
1188  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1189    
1190  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1191  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1192  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = x ; then
1193        STANDARDDIRS="eesupp model"
1194    fi
1195  for d in $STANDARDDIRS ; do  for d in $STANDARDDIRS ; do
1196      adr="$ROOTDIR/$d/src"      adr="$ROOTDIR/$d/src"
1197      if test ! -d $adr ; then      if test ! -d $adr ; then
# Line 812  for d in $STANDARDDIRS ; do Line 1211  for d in $STANDARDDIRS ; do
1211      fi      fi
1212  done  done
1213    
1214    echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"
1215    echo "    of \"#define ALLOW_PKGNAME\"-type statements:"
1216    CPP_OPTIONS=
1217    spaths=". $INCLUDEDIRS"
1218    for i in $spaths ; do
1219        try="$i/CPP_OPTIONS.h"
1220        #  echo -n "    trying $try : "
1221        if test -f $try -a -r $try ; then
1222            echo "    found CPP_OPTIONS=\"$try\""
1223            CPP_OPTIONS="$try"
1224            break
1225        fi
1226    done
1227    if test "x$CPP_OPTIONS" = x ; then
1228        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1229        exit 1
1230    fi
1231    # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1232    names=`ls -1 "$ROOTDIR/pkg"`
1233    for n in $names ; do
1234        test_for_package_in_cpp_options $CPP_OPTIONS $n
1235    done
1236    
1237    
1238    #  Here, we build the list of files to be "run through" the adjoint
1239    #  compiler.
1240    if test -f ./ad_files ; then
1241        rm -f ./ad_files
1242    fi
1243    echo "  Creating the list of files for the adjoint compiler."
1244    for i in $SOURCEDIRS ; do
1245        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1246        for j in $list_files ; do
1247            cat $i/$j >> ad_files
1248        done
1249    done
1250    
1251  echo  echo
1252  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1253  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1254  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1255      if test -d $i ; then      if ! test -d $i ; then
1256          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1257      else  #   else
1258          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1259      fi      fi
1260  done  done
# Line 833  echo -n 'SRCFILES = '    > srclist.inc Line 1268  echo -n 'SRCFILES = '    > srclist.inc
1268  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1269  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1270  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1271  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1272    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1273  for d in $alldirs ; do  for d in $alldirs ; do
1274      deplist=      deplist=
1275      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1276      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1277      for sf in $sfiles ; do      for sf in $sfiles ; do
1278          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1279              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1280                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1281                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1282                  deplist="$deplist $sf"                          ;;
1283                      ./AD_CONFIG.h)
1284                            ;;
1285                      ./FC_NAMEMANGLE.h)
1286                            ;;
1287                      *)
1288                            touch .links.tmp/$sf
1289                            deplist="$deplist $sf"
1290                            ;;
1291                    esac
1292                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1293                  case $extn in                  case $extn in
1294                      F)                      F)
1295                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 861  for d in $alldirs ; do Line 1307  for d in $alldirs ; do
1307                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1308                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1309                          ;;                          ;;
1310                        flow)
1311                            echo    " \\"  >> ad_flow_files.inc
1312                            echo -n " $sf" >> ad_flow_files.inc
1313                            ;;
1314                  esac                  esac
1315              fi              fi
1316          fi          fi
# Line 877  echo "" >> srclist.inc Line 1327  echo "" >> srclist.inc
1327  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1328  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1329  echo "" >> hlist.inc  echo "" >> hlist.inc
1330    echo "" >> ad_flow_files.inc
1331    
1332  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1333      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 890  echo "# by the command:" >> $MAKEFILE Line 1341  echo "# by the command:" >> $MAKEFILE
1341  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1342  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1343  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1344    
1345    EXE_AD=$EXECUTABLE"_ad"
1346    EXE_FTL=$EXECUTABLE"_ftl"
1347    EXE_SVD=$EXECUTABLE"_svd"
1348    
1349  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1350  #  #
1351  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
# Line 918  EXEDIR      = ${EXEDIR} Line 1374  EXEDIR      = ${EXEDIR}
1374  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1375  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1376    
1377    #eh3  new defines for the adjoint work
1378    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1379    EXE_AD      = ${EXE_AD}
1380    EXE_FTL     = ${EXE_FTL}
1381    EXE_SVD     = ${EXE_SVD}
1382    
1383    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1384    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1385    
1386  EOF  EOF
1387    
1388  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 963  MAKEFILE=${MAKEFILE} Line 1428  MAKEFILE=${MAKEFILE}
1428    
1429  EOF  EOF
1430    
1431  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1432  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1433  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1434  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1435    cat ad_flow_files.inc >> $MAKEFILE
1436    echo               >> $MAKEFILE
1437  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1438  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1439  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1440    
1441  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1442    rm -f ad_flow_files.inc
1443    
1444  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1445    
# Line 979  cat >>$MAKEFILE <<EOF Line 1447  cat >>$MAKEFILE <<EOF
1447  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1448    
1449  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1450  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): links \$(OBJFILES)
1451            @echo Creating \$@ ...
1452          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1453  depend:  depend:
1454          @make links          @make links
1455          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1456          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1457    
1458  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) ${PACKAGES_DOT_H} AD_CONFIG.h
1459    
1460  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1461    
# Line 995  output.txt: \$(EXECUTABLE) Line 1464  output.txt: \$(EXECUTABLE)
1464          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1465    
1466  clean:  clean:
1467          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1468  Clean:  Clean:
1469          @make clean          @make clean
1470          @make cleanlinks          @make cleanlinks
1471          -rm -f Makefile.bak          -rm -f ${PACKAGES_DOT_H} AD_CONFIG.h
1472            -rm -f Makefile.bak genmake_state genmake_*optfile genmake_warnings make.log
1473  CLEAN:  CLEAN:
1474          @make Clean          @make Clean
1475          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1476          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1477          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1478          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1479    
1480    #eh3 Makefile: makefile
1481  makefile:  makefile:
1482          ${0} $@          $THIS_SCRIPT $@
1483  cleanlinks:  cleanlinks:
1484          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1485    
1486    # Special targets
1487    ${PACKAGES_DOT_H}:
1488            @echo Creating \$@ ...
1489            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1490    AD_CONFIG.h:
1491            @echo Creating \$@ ...
1492            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1493    
1494  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1495  .F.f:  .F.f:
1496          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1030  cleanlinks: Line 1509  cleanlinks:
1509  .p.f:  .p.f:
1510          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1511    
1512    #=========================================
1513    #===  Automatic Differentiation Rules  ===
1514    
1515    TAMC           = ${TAMC}
1516    TAF            = ${TAF}
1517    
1518    TAF_EXTRA      = ${TAF_EXTRA}
1519    TAMC_EXTRA     = ${TAMC_EXTRA}
1520    
1521    EOF
1522    
1523    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1524    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1525    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1526    for i in $ad_vars ; do
1527        name=$i
1528        t1="t2=\$"`echo $i`
1529        eval $t1
1530        printf "%-20s = " $name >> $MAKEFILE
1531        echo $t2 >> $MAKEFILE
1532    done
1533    
1534    echo "  Add the source list for AD code generation"
1535    echo >> $MAKEFILE
1536    echo -n "AD_FILES = " >> $MAKEFILE
1537    AD_FILES=`cat ad_files`
1538    for i in $AD_FILES ; do
1539        echo    " \\" >> $MAKEFILE
1540        echo -n " $i" >> $MAKEFILE
1541    done
1542    echo >> $MAKEFILE
1543    rm -f ad_files
1544    
1545    cat >>$MAKEFILE <<EOF
1546    
1547    # ... AD ...
1548    adall: ad_taf
1549    adtaf: ad_taf_output.f
1550    adtamc: ad_tamc_output.f
1551    
1552    ad_input_code.f: links \$(AD_FILES) \$(HEADERFILES)
1553            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1554            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1555            -rm -f ad_config.template
1556            @make \$(F77FILES)
1557            @make \$(AD_FLOW_FILES)
1558            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1559    
1560    ad_taf_output.f: ad_input_code.f
1561            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1562            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1563    
1564    adtafonly:
1565            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1566            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1567    
1568    ad_taf: ad_taf_output.o \$(OBJFILES)
1569            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1570    
1571    ad_tamc_output.f: ad_input_code.f
1572            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1573            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1574    
1575    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1576            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1577    
1578    
1579    # ... FTL ...
1580    ftlall: ftl_taf
1581    ftltaf: ftl_taf_output.f
1582    ftltamc: ftl_tamc_output.f
1583    
1584    ftl_input_code.f: links \$(AD_FILES) \$(HEADERFILES)
1585            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1586            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1587            -rm -f ftl_config.template
1588            @make \$(F77FILES)
1589            @make \$(AD_FLOW_FILES)
1590            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1591    
1592    ftl_taf_output.f: ftl_input_code.f
1593            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1594            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1595    
1596    ftltafonly:
1597            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1598            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1599    
1600    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1601            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1602    
1603    ftl_tamc_output.f: ftl_input_code.f
1604            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1605            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1606    
1607    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1608            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1609    
1610    
1611    # ... SVD ...
1612    svdtaf: ad_taf_output.f ftl_taf_output.f
1613    svdall: svd_taf
1614    
1615    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1616            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1617    
1618    
1619    #=========================================
1620    
1621  EOF  EOF
1622    
1623  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1066  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1654  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1654    
1655  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1656    
1657    # Create special header files
1658    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1659    if test ! -f $PACKAGES_DOT_H ; then
1660        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1661    else
1662        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1663        RETVAL=$?
1664        if test "x$RETVAL" = x0 ; then
1665            rm -f $PACKAGES_DOT_H".tmp"
1666        else
1667            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1668            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1669        fi
1670    fi
1671    if test ! -f AD_CONFIG.h ; then
1672        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1673    fi
1674    
1675    
1676  #  Write the "state" for future records  #  Write the "state" for future records
1677  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1678      echo -n "" > gm_state      echo -n "" > genmake_state
1679      for i in $gm_state ; do      for i in $gm_state ; do
1680          t1="t2=\$$i"          t1="t2=\$$i"
1681          eval $t1          eval $t1
1682          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" >> genmake_state
1683      done      done
1684  fi  fi

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