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revision 1.4 by edhill, Tue Aug 26 16:22:15 2003 UTC revision 1.42 by adcroft, Thu Nov 20 18:29:07 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #!/bin/sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1
17        RETVAL=$?
18        if test "x${RETVAL}" = x0 ; then
19            echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"
20            exit 99
21        fi
22        grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1
23        RETVAL=$?
24        if test "x${RETVAL}" = x0 ; then
25            echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"
26            exit 99
27        fi
28        grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1
29        RETVAL=$?
30        if test "x${RETVAL}" = x0 ; then
31            echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"
32            exit 99
33        fi
34        grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1
35        RETVAL=$?
36        if test "x${RETVAL}" = x0 ; then
37            echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"
38            exit 99
39       fi
40    }
41    
42    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
43    # the package list.
44    expand_pkg_groups() {
45        new_packages=
46        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
47        if test -r $PKG_GROUPS ; then
48            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
49            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
50            matched=0
51            for i in $PACKAGES ; do
52                line=`grep "^ *$i" ./p2.tmp`
53                RETVAL=$?
54                if test "x$RETVAL" = x0 ; then
55                    matched=1
56                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
57                    echo "    replacing \"$i\" with: $replace"
58                    new_packages="$new_packages $replace"
59                else
60                    new_packages="$new_packages $i"
61                fi
62            done
63            PACKAGES=$new_packages
64            rm -f ./p[1,2].tmp
65        else
66            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
67        fi
68    }
69    
70  # Guess possible config options for this host  # Guess possible config options for this host
71  find_possible_configs()  {  find_possible_configs()  {
72    
73      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
74      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
75      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
76        PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
77      p_LN=      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
78        echo "  The platform appears to be:  $PLATFORM"
79        
80      echo "test" > test      echo "test" > test
81      ln -s ./test link      ln -s ./test link
82      RETVAL=$?      RETVAL=$?
83      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
84          p_LN="ln -s"          LN="ln -s"
85        else
86            echo "Error: \"ln -s\" does not appear to work on this system!"
87            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
88            exit 1
89      fi      fi
90      rm -f test link      rm -f test link
91    
92      p_CPP=`which cpp`      if test "x$CPP" = x ; then
93                CPP="cpp -traditional -P"
94      RETVAL=$?      fi
95      if test "x${RETVAL}" = x0 ; then  
96          p_LN="ln -s"      # makedepend is not always available
97        if test "x${MAKEDEPEND}" = x ; then
98          which makedepend >& /dev/null
99          RETVAL=$?
100          if test "x${RETVAL}" = x1 ; then
101             echo "    makedepend was not found. Using xmakedpend instead."
102             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
103          fi
104      fi      fi
     rm -f test link  
105    
106      # look for possible fortran compilers      # look for possible fortran compilers
107        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
108      p_FC=      p_FC=
109      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      for c in $tmp ; do
110          which $c > /dev/null 2>&1          rm -f ./hello.f ./hello
111            cat >> hello.f <<EOF
112          program hello
113          do i=1,3
114            print *, 'hello world : ', i
115          enddo
116          end
117    EOF
118            $c -o hello hello.f > /dev/null 2>&1
119          RETVAL=$?          RETVAL=$?
120          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
121              p_FC="$p_FC $c"              p_FC="$p_FC $c"
122          fi          fi
123      done      done
124      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./hello.f ./hello
125      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
126          echo "  None found!!!"          cat 1>&2 <<EOF
127      else  
128          echo "  "$p_FC  Error: No Fortran compilers were found in your path.  Please specify one using:
129      fi  
130        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
131        2) a command-line option (eg. "-fc NAME"), or
132        3) the MITGCM_FC environment variable.
133    
     # look for possible MPI libraries  
     mpi_libs=  
     mpi_fort=`which mpif77 2>/dev/null`  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         cat >>test.f <<EOF  
       PROGRAM HELLO  
       DO 10, I=1,10  
       PRINT *,'Hello World'  
    10 CONTINUE  
       STOP  
       END  
134  EOF  EOF
135          eval "$mpi_fort -showme test.f > out"          exit 1
136          RETVAL=$?      else
137          if test "x${RETVAL}" = x0 ; then          echo "  The possible FORTRAN compilers found in your path are:"
138              a=`cat out`          echo "   "$p_FC
139              for i in $a ; do          if test "x$FC" = x ; then
140                  case $i in              FC=`echo $p_FC | $AWK '{print $1}'`
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
141          fi          fi
         rm -f test.f out  
142      fi      fi
143    
144  }      for i in $p_FC ; do
145            p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
146            if test -r $p_OF ; then
147                OPTFILE=$p_OF
148                echo "  The options file:  $p_OF"
149                echo "    appears to match so we'll use it."
150                break
151            fi
152        done
153        if test "x$OPTFILE" = x ; then
154            cat 1>&2 <<EOF
155    
156  parse_options()  {  Error: No options file was found in:  $ROOTDIR/tools/build_options/
157      that matches this platform ("$PLATFORM") and the compilers found in
158      your path.  Please specify an "optfile" using:
159    
160      ac_prev=      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
161      for ac_option in "${OPTIONS[@]}" ; do      2) the MITGCM_OF environment variable.
162    
163      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
164    
165    EOF
166            exit 1
167        fi
168        
169    #     # look for possible MPI libraries
170    #     mpi_libs=
171    #     mpi_fort=`which mpif77 2>/dev/null`
172    #     RETVAL=$?
173    #     if test "x${RETVAL}" = x0 ; then
174    #       cat >>test.f <<EOF
175    #       PROGRAM HELLO
176    #       DO 10, I=1,10
177    #       PRINT *,'Hello World'
178    #    10 CONTINUE
179    #       STOP
180    #       END
181    # EOF
182    #       eval "$mpi_fort -showme test.f > out"
183    #       RETVAL=$?
184    #       if test "x${RETVAL}" = x0 ; then
185    #           a=`cat out`
186    #           for i in $a ; do
187    #               case $i in
188    #                   -*)
189    #                       mpi_libs="$mpi_libs $i" ;;
190    #               esac
191    #           done
192    #           echo "The MPI libs appear to be:"
193    #           echo "  "$mpi_libs
194    #       fi
195    #       rm -f test.f out
196    #     fi
197    
         # echo "ac_option = :$ac_option:"  
           
         # If the previous option needs an argument, assign it.  
         if test -n "$ac_prev"; then  
             eval "$ac_prev=\$ac_option"  
             ac_prev=  
             continue  
         fi  
           
         ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`  
           
         case $ac_option in  
               
             -help | --help | -h | --h)  
                 usage ;;  
               
             -nooptfile | --nooptfile)  
                 OPTFILE="NONE" ;;  
             -optfile | --optfile | -of | --of)  
                 ac_prev=optfile ;;  
             -optfile=* | --optfile=* | -of=* | --of=*)  
                 OPTFILE=$ac_optarg ;;  
               
             -pdepend | --pdepend)  
                 ac_prev=pdepend ;;  
             -pdepend=* | --pdepend=*)  
                 PDEPEND=$ac_optarg ;;  
               
             -pdefault | --pdefault)  
                 ac_prev=pdefault ;;  
             -pdefault=* | --pdefault=*)  
                 PDEFAULT=$ac_optarg ;;  
               
             -makefile | -ma)  
                 ac_prev=makefile ;;  
             --makefile=* | -ma=*)  
                 MAKEFILE=$ac_optarg ;;  
               
             -platform | --platform | -pl | --pl)  
                 ac_prev=platform ;;  
             -platform=* | --platform=* | -pl=* | --pl=*)  
                 PLATFORM=$ac_optarg ;;  
   
             -rootdir | --rootdir | -rd | --rd)  
                 ac_prev=rootdir ;;  
             -rootdir=* | --rootdir=* | -rd=* | --rd=*)  
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
198  }  }
199    
200  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 203  get_pdepend_list()  {
203      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
204      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
205      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
206          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
207          > ./.pd_tmp          > ./.pd_tmp
208      source ./.pd_tmp      . ./.pd_tmp
209      rm -f ./.pd_tmp      rm -f ./.pd_tmp
210    
211      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 210  get_pdepend_list()  { Line 214  get_pdepend_list()  {
214    
215  #  Explain usage  #  Explain usage
216  usage()  {  usage()  {
217      echo  cat <<EOF
218      echo "Usage: "$0" [OPTIONS]"  
219      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
220      echo    where [OPTIONS] can be:
221      echo "    -help | --help | -h | --h"  
222      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
223      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
224      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
225      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
226      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
227      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
228      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
229      echo "    -makefile NAME | -ma NAME"            made to find an appropriate "standard" optfile in the
230      echo "      --makefile=NAME | -ma=NAME"            tools/build_options/ directory.
231      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  
232      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"      -pdepend NAME | --pdepend NAME
233      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"        -pdepend=NAME | --pdepend=NAME
234      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"            Get package dependency information from "NAME".
235      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  
236      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"      -pdefault NAME | --pdefault NAME
237      echo "    -disable NAME | --disable NAME"        -pdefault=NAME | --pdefault=NAME
238      echo "      -disable=NAME | --disable=NAME"            Get the default package list from "NAME".
239      echo "    -enable NAME | --enable NAME"  
240      echo "      -enable=NAME | --enable=NAME"      -make NAME | -m NAME
241      echo "    -noopt NAME | --noopt NAME"        --make=NAME | -m=NAME
242      echo "      -noopt=NAME | --noopt=NAME"            Use "NAME" for the MAKE program. The default is "make" but
243  #    echo "    -cpp NAME | --cpp NAME"            many platforms, "gmake" is the preferred choice.
244  #    echo "      -cpp=NAME | --cpp=NAME"  
245      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -makefile NAME | -mf NAME
246      echo "      -fc=NAME | --fc=NAME"        --makefile=NAME | -mf=NAME
247      echo "    -[no]ieee | --[no]ieee"            Call the makefile "NAME".  The default is "Makefile".
248      echo "    -[no]mpi | --[no]mpi"  
249      echo "    -[no]jam | --[no]jam"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
250      echo        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
251      echo "  and NAME is a string such as:"            Specify the location of the MITgcm ROOTDIR as "NAME".
252      echo            By default, genamke will try to find the location by
253      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            looking in parent directories (up to the 5th parent).
254      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
255      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
256      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
257      echo "  which, depending upon your shell, may need to be single-quoted"            Here, "NAME" specifies a list of directories that are
258      echo "  if it contains spaces, dashes, or other special characters."            used for additional source code.  Files found in the
259              "mods list" are given preference over files of the same
260              name found elsewhere.
261    
262        -disable NAME | --disable NAME
263          -disable=NAME | --disable=NAME
264              Here "NAME" specifies a list of packages that we don't
265              want to use.  If this violates package dependencies,
266              genamke will exit with an error message.
267    
268        -enable NAME | --enable NAME
269          -enable=NAME | --enable=NAME
270              Here "NAME" specifies a list of packages that we wish
271              to specifically enable.  If this violates package
272              dependencies, genamke will exit with an error message.
273    
274        -standarddirs NAME | --standarddirs NAME
275          -standarddirs=NAME | --standarddirs=NAME
276              Here, "NAME" specifies a list of directories to be
277              used as the "standard" code.
278    
279        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
280          -fc=NAME | --fc=NAME
281              Use "NAME" as the fortran compiler.  By default, genmake
282              will search for a working compiler by trying a list of
283              "usual suspects" such as g77, f77, etc.
284    
285        -[no]ieee | --[no]ieee
286              Do or don't use IEEE numerics.  Note that this option
287              *only* works if it is supported by the OPTFILE that
288              is being used.
289    
290      While it is most often a single word, the "NAME" variables specified
291      above can in many cases be a space-delimited string such as:
292    
293        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
294        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
295        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
296    
297      which, depending upon your shell, may need to be single-quoted.
298    
299      For more detailed genmake documentation, please see:
300    
301        http://mitgcm.org/devel_HOWTO/
302    
303    EOF
304    
305      exit 1      exit 1
306  }  }
307    
308  # Dump all important state  #  Build a CPP macro to automate calling C routines from FORTRAN
309  dump_state()  {  get_fortran_c_namemangling()  {
310      fname=$1      default_nm="#define FC_NAMEMANGLE(X) X ## _"
311      echo " " > $fname      
312        cat > genmake_test.c <<EOF
313    void tcall( char * string ) { tsub( string ); }
314    EOF
315        $MAKE genmake_test.o >> genmake_warnings 2>&1
316      RETVAL=$?      RETVAL=$?
317      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" != x0 ; then
318          echo "Error: cannot write to $fname"          FC_NAMEMANGLE=$default_nm
319          exit 1          cat <<EOF>> genmake_errors
320    
321    WARNING: C test compile fails
322    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
323    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
324    EOF
325            return 1
326        fi
327        c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`
328        RETVAL=$?
329        if test "x$RETVAL" != x0 ; then
330            FC_NAMEMANGLE=$default_nm
331            cat <<EOF>> genmake_warnings
332    
333    WARNING: The "nm" command failed.
334    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
335    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
336    EOF
337            return 1
338        fi
339        cat > genmake_tcomp.f <<EOF
340          subroutine tcall( string )
341          character*(*) string
342          call tsub( string )
343          end
344    EOF
345        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
346        RETVAL=$?
347        if test "x$RETVAL" != x0 ; then
348            FC_NAMEMANGLE=$default_nm
349            cat <<EOF>> genmake_warnings
350    
351    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
352    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
353    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
354    EOF
355            return 1
356        fi
357        f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`
358        RETVAL=$?
359        if test "x$RETVAL" != x0 ; then
360            FC_NAMEMANGLE=$default_nm
361            cat <<EOF>> genmake_warnings
362    
363    WARNING: The "nm" command failed.
364    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
365    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
366    EOF
367            return 1
368        fi
369    
370        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
371        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
372        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
373        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
374    
375        nmangle="X"
376        if test "x$c_a" != "x$f_a" ; then
377            comm="echo x$f_a | sed -e 's|x$c_a||'"
378            a=`eval $comm`
379            nmangle="$a ## $nmangle"
380        fi
381        if test "x$c_b" != "x$f_b" ; then
382            comm="echo x$f_b | sed -e 's|x$c_b||'"
383            b=`eval $comm`
384            nmangle="$nmangle ## $b"
385      fi      fi
386      echo "makefile "$makefile > $fname  
387        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
388    
389        #  cleanup the testing files
390        rm -f genmake_tcomp.* genmake_test.*
391  }  }
392    
393    
394  #eh3 # This is the generic configuration.  check_HAVE_CLOC()  {
395  #eh3 set LN         = ( 'ln -s' )      get_fortran_c_namemangling
396  #eh3 set CPP        = ( '/lib/cpp -P' )      cat <<EOF > genmake_tc_1.c
397  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  $FC_NAMEMANGLE
398  #eh3 set KPP        = (  )  #include <stdio.h>
399  #eh3 set FC         = ( 'f77' )  #include <stdlib.h>
400  #eh3 set LINK       = $FC  #include <unistd.h>
401  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <assert.h>
402  #eh3 set INCLUDES   = ( -I. )  #include <sys/time.h>
403  #eh3 set FFLAGS     = (  )  void FC_NAMEMANGLE(cloc) ( double *curtim )
404  #eh3 set FOPTIM     = (  )  {
405  #eh3 set CFLAGS     = (  )   struct timeval tv1;
406  #eh3 set KFLAGS1    = (  )   gettimeofday(&tv1 , (void *)NULL );
407  #eh3 set KFLAGS2    = (  )   *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
408  #eh3 set LIBS       = (  )   *curtim = *curtim/1.E6;
409  #eh3 set KPPFILES   = (  )  }
410  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
411  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      make genmake_tc_1.o >> genmake_tc.log 2>&1
412        RET_C=$?
413        cat <<EOF > genmake_tc_2.f
414          program hello
415          Real*8 wtime
416          external cloc
417          call cloc(wtime)
418          print *," HELLO WORLD", wtime
419          end program hello
420    EOF
421        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
422        RET_F=$?
423        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
424        RETVAL=$?
425        if test "x$RETVAL" = x0 ; then
426            HAVE_CLOC=t
427            DEFINES="$DEFINES -DHAVE_CLOC"
428        fi
429        rm -f genmake_tc*
430    }
431    
432    
433  #  Set defaults here  #  Set defaults here
434    COMMANDL="$0 $@"
435    
436  PLATFORM=  PLATFORM=
437  LN=  LN=
438  S64=  S64=
439  KPP=  KPP=
440  FC=  FC=
441  LINK=  LINK=
442    # DEFINES="-DWORDLENGTH=4"
443    DEFINES=
444  PACKAGES=  PACKAGES=
445  ENABLE=  ENABLE=
446  DISABLE=  DISABLE=
447  MAKEFILE=  MAKEFILE=
448  MAKEDEPEND=  MAKEDEPEND=
449  PDEPEND=  PDEPEND=
450    DUMPSTATE=t
451  PDEFAULT=  PDEFAULT=
452  OPTFILE=  OPTFILE=
453  INCLUDES="-I."  INCLUDES="-I."
# Line 313  KPPFILES= Line 461  KPPFILES=
461  NOOPTFILES=  NOOPTFILES=
462  NOOPTFLAGS=  NOOPTFLAGS=
463    
464    # DEFINES checked by test compilation
465    HAVE_SYSTEM=
466    HAVE_FDATE=
467    FC_NAMEMANGLE=
468    HAVE_CLOC=
469    
470  MODS=  MODS=
471  TOOLSDIR=  TOOLSDIR=
472  SOURCEDIRS=  SOURCEDIRS=
473  INCLUDEDIRS=  INCLUDEDIRS=
474    STANDARDDIRS=
475    
476  PWD=`pwd`  PWD=`pwd`
477  MAKE=make  MAKE=make
478    AWK=awk
479  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
480  THISCWD=`pwd`  THISCWD=`pwd`
481  THISDATE=`date`  THISDATE=`date`
482  MACHINE=`uname -a`  MACHINE=`uname -a`
483    EXECUTABLE=
484    EXEHOOK=
485    EXEDIR=
486    PACKAGES_CONF=
487    IEEE=
488    if test "x$MITGCM_IEEE" != x ; then
489        IEEE=$MITGCM_IEEE
490    fi
491    
492    AUTODIFF_PKG_USED=f
493    AD_OPTFILE=
494    TAF=
495    AD_TAF_FLAGS=
496    FTL_TAF_FLAGS=
497    SVD_TAF_FLAGS=
498    TAF_EXTRA=
499    TAMC=
500    AD_TAMC_FLAGS=
501    FTL_TAF_FLAGS=
502    SVD_TAMC_FLAGS=
503    TAMC_EXTRA=
504    
505    
506    #  The following state can be set directly by command-line switches
507    gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
508    gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
509    
510    #  The following state is not directly set by command-line switches
511    gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
512    gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
513    gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
514    gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
515    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
516    
517    #  The following are all related to adjoint/tangent-linear stuff
518    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
519    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
520    gm_s12="TAF_EXTRA TAMC_EXTRA"
521    
522    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
523    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
524    
525    cat <<EOF
526    
527    GENMAKE :
528    
529    A program for GENerating MAKEfiles for the MITgcm project.  For a
530    quick list of options, use "genmake -h" or for more detail see:
531    
532      http://mitgcm.org/devel_HOWTO/
533    
534    EOF
535    
 echo  
536  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
537  gm_local="./gm_local"  gm_local="genmake_local"
538    for i in . $MODS ; do
539        if test -r $i/$gm_local ; then
540            . $i/$gm_local
541            break
542        fi
543    done
544  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
545  if test -e $gm_local ; then  if test -e $gm_local ; then
546      echo "using $gm_local"      echo "using $gm_local"
547      source $gm_local      . $gm_local
548      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
549      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
550  else  else
# Line 349  fi Line 562  fi
562  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
563  #done  #done
564  #parse_options  #parse_options
   
565  ac_prev=  ac_prev=
566  for ac_option ; do  for ac_option ; do
567    
# Line 374  for ac_option ; do Line 586  for ac_option ; do
586          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
587              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
588                    
589            -adoptfile | --adoptfile | -ad | --ad)
590                ac_prev=AD_OPTFILE ;;
591            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
592                AD_OPTFILE=$ac_optarg ;;
593            
594          -pdepend | --pdepend)          -pdepend | --pdepend)
595              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
596          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 384  for ac_option ; do Line 601  for ac_option ; do
601          -pdefault=* | --pdefault=*)          -pdefault=* | --pdefault=*)
602              PDEFAULT=$ac_optarg ;;              PDEFAULT=$ac_optarg ;;
603                    
604          -makefile | -ma)          -make | --make | -m | --m)
605                ac_prev=MAKE ;;
606            -make=* | --make=* | -m=* | --m=*)
607                MAKE=$ac_optarg ;;
608            
609            -makefile | --makefile | -ma | --ma)
610              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
611          --makefile=* | -ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
612              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
613                    
614          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
615              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
616          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
617              PLATFORM=$ac_optarg ;;              echo
618                usage
619                ;;
620                    
621          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
622              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 414  for ac_option ; do Line 638  for ac_option ; do
638          -enable=* | --enable=*)          -enable=* | --enable=*)
639              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
640                    
641          -noopt | --noopt)          -standarddirs | --standarddirs)
642              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
643          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
644              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
645            
646  #           -cpp | --cpp)  #           -cpp | --cpp)
647  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
648  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 430  for ac_option ; do Line 654  for ac_option ; do
654              FC=$ac_optarg ;;              FC=$ac_optarg ;;
655                    
656          -ieee | --ieee)          -ieee | --ieee)
657              IEEE=1 ;;              IEEE=true ;;
658          -noieee | --noieee)          -noieee | --noieee)
659              IEEE=0 ;;              IEEE= ;;
           
         -mpi | --mpi)  
             MPI=1 ;;  
         -nompi | --nompi)  
             MPI=0 ;;  
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
660                    
661    #       -jam | --jam)
662    #           JAM=1 ;;
663    #       -nojam | --nojam)
664    #           JAM=0 ;;
665            
666            -ds | --ds)
667                DUMPSTATE=t ;;
668            
669            -taf_extra | --taf_extra)
670                ac_prev=TAF_EXTRA ;;
671            -taf_extra=* | --taf_extra=*)
672                TAF_EXTRA=$ac_optarg ;;
673    
674            -tamc_extra | --tamc_extra)
675                ac_prev=TAMC_EXTRA ;;
676            -tamc_extra=* | --tamc_extra=*)
677                TAMC_EXTRA=$ac_optarg ;;
678    
679          -*)          -*)
680              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
681              usage              usage
# Line 458  for ac_option ; do Line 690  for ac_option ; do
690            
691  done  done
692    
693    if test -f ./.genmakerc ; then
694        echo
695        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
696        echo "  file.  This file format is no longer supported.  Please see:"
697        echo
698        echo "    http://mitgcm.org/devel_HOWTO/"
699        echo
700        echo "  for directions on how to setup and use the new \"genmake2\" input"
701        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
702        echo
703    fi
704    
705    if test "x${ROOTDIR}" = x ; then
706        if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
707            ROOTDIR=".."
708        else
709            for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
710                if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
711                    ROOTDIR=$d
712                    echo -n "Warning:  ROOTDIR was not specified but there appears to be"
713                    echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
714                    break
715                fi
716            done
717        fi
718    fi
719    if test "x${ROOTDIR}" = x ; then
720        echo "Error: Cannot determine ROOTDIR for MITgcm code."
721        echo "  Please specify a ROOTDIR using either an options "
722        echo "  file or a command-line option."
723        exit 1
724    fi
725    if test ! -d ${ROOTDIR} ; then
726        echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
727        exit 1
728    fi
729    
730  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
731  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
732      echo "Warning: no OPTFILE specified so we'll look for possible settings"      if test "x$MITGCM_OF" = x ; then
733      printf "\n===  Searching for possible settings for OPTFILE  ===\n"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
734      find_possible_configs          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
735  else          find_possible_configs
     if test "x$OPTFILE" = xNONE ; then  
         echo "    OPTFILE=NONE so we'll try to use default settings"  
736      else      else
737          if test -f "$OPTFILE" -a -r "$OPTFILE" ; then          OPTFILE=$MITGCM_OF
738              echo "    using OPTFILE=\"$OPTFILE\""      fi
739              source "$OPTFILE"  fi
740              RETVAL=$?  if test "x$OPTFILE" != xNONE ; then
741              if test "x$RETVAL" != x0 ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
742                  echo -n "Error: failed to source OPTFILE \"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
743                  echo "--please check that variable syntax is bash-compatible"          . "$OPTFILE"
744                  exit 1          RETVAL=$?
745              fi          if test "x$RETVAL" != x0 ; then
746          else              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
747              echo "Error: can't read OPTFILE=\"$OPTFILE\""              echo "--please check that variable syntax is bash-compatible"
748                exit 1
749            fi
750            if test "x$DUMPSTATE" != xf ; then
751                cp -f $OPTFILE "genmake_optfile"
752            fi
753        else
754            echo "Error: can't read OPTFILE=\"$OPTFILE\""
755            exit 1
756        fi
757    fi
758    
759    echo "  getting AD_OPTFILE information:  "
760    if test "x${AD_OPTFILE}" = x ; then
761        if test "x$MITGCM_AD_OF" = x ; then
762            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
763        else
764            AD_OPTFILE=$MITGCM_AD_OF
765        fi
766    fi
767    if test "x${AD_OPTFILE}" != xNONE ; then
768        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
769            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
770            . "$AD_OPTFILE"
771            RETVAL=$?
772            if test "x$RETVAL" != x0 ; then
773                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
774                echo "--please check that variable syntax is bash-compatible"
775              exit 1              exit 1
776          fi          fi
777            if test "x$DUMPSTATE" != xf ; then
778                cp -f $AD_OPTFILE "genmake_ad_optfile"
779            fi
780        else
781            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
782            exit 1
783      fi      fi
784  fi  fi
785    
786    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
787    #  either set defaults or complain and abort!
788    if test "x$FC" = x ; then
789        cat <<EOF 1>&2
790    
791    Error: no Fortran compiler: please specify using one of the following:
792      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
793      2) the "-fc=XXX" command-line option
794      3) the "./genmake_local" file
795    EOF
796        exit 1
797    fi
798    if test "x$LINK" = x ; then
799        LINK=$FC
800    fi
801    if test "x$CPP" = x ; then
802        CPP="cpp"
803    fi
804    if test "x$MAKE" = x ; then
805        MAKE="make"
806    fi
807    echo "#define A a" | $CPP > test_cpp 2>&1
808    RETVAL=$?
809    if test "x$RETVAL" != x0 ; then
810        cat <<EOF 1>&2
811    
812    Error: C pre-processor "$CPP" failed the test case: please specify using:
813    
814      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
815      2) the "./genmake_local" file
816      3) with the CPP environment variable
817    
818    EOF
819        exit 1
820    else
821        rm -f test_cpp
822    fi
823    if test "x$MAKEDEPEND" = x ; then
824        MAKEDEPEND=makedepend
825    fi
826    if test "x$LN" = x ; then
827        LN="ln -s"
828    fi
829    echo "test" > genmake_test_ln
830    $LN genmake_test_ln genmake_tlink
831    RETVAL=$?
832    if test "x$RETVAL" != x0 ; then
833        cat <<EOF 1>&2
834    
835    Error: The command "ln -s" failed -- please specify a working soft-link
836      command in the optfile.
837    
838    EOF
839        exit 1
840    fi
841    rm -f genmake_test_ln genmake_tlink
842    
843    
844    printf "\n===  Checking system libraries  ===\n"
845    echo -n "  Do we have the system() command using $FC...  "
846    cat > genmake_tcomp.f <<EOF
847          program hello
848          call system('echo hi')
849          end
850    EOF
851    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
852    RETVAL=$?
853    if test "x$RETVAL" = x0 ; then
854        HAVE_SYSTEM=t
855        DEFINES="$DEFINES -DHAVE_SYSTEM"
856        echo "yes"
857    else
858        HAVE_SYSTEM=
859        echo "no"
860    fi
861    rm -f genmake_tcomp*
862    
863    echo -n "  Do we have the fdate() command using $FC...  "
864    cat > genmake_tcomp.f <<EOF
865          program hello
866          CHARACTER(128) string
867          string = ' '
868          call fdate( string )
869          print *, string
870          end
871    EOF
872    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
873    RETVAL=$?
874    if test "x$RETVAL" = x0 ; then
875        HAVE_FDATE=t
876        DEFINES="$DEFINES -DHAVE_FDATE"
877        echo "yes"
878    else
879        HAVE_FDATE=
880        echo "no"
881    fi
882    rm -f genmake_tcomp*
883    
884    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
885    check_HAVE_CLOC
886    if test "x$HAVE_CLOC" != x ; then
887        echo "yes"
888    else
889        echo "no"
890    fi
891    echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template
892    cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1
893    RETVAL=$?
894    if test "x$RETVAL" != x0 ; then
895        mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h
896    fi
897    rm -f genmake_t*
898    
899    
900  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
901  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
902  for d in $MODS ; do  for d in $MODS ; do
# Line 505  if test "x${PLATFORM}" = x ; then Line 919  if test "x${PLATFORM}" = x ; then
919      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
920  fi  fi
921    
 if test "x${ROOTDIR}" = x ; then  
     if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then  
         ROOTDIR=".."  
     else  
         for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do  
             if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then  
                 ROOTDIR=$d  
                 echo -n "Warning:  ROOTDIR was not specified but there appears to be"  
                 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."  
                 break  
             fi  
         done  
     fi  
 fi  
 if test "x${ROOTDIR}" = x ; then  
     echo "Error: Cannot determine ROOTDIR for MITgcm code."  
     echo "  Please specify a ROOTDIR using either an options "  
     echo "  file or a command-line option."  
     exit 1  
 fi  
 if test ! -d ${ROOTDIR} ; then  
     echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"  
     exit 1  
 fi  
   
922  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
923      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then
924          EXEDIR=../exe          EXEDIR=../exe
# Line 549  if test ! -d ${TOOLSDIR} ; then Line 938  if test ! -d ${TOOLSDIR} ; then
938      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"
939      exit 1      exit 1
940  fi  fi
941    if test "x$S64" = x ; then
942        S64='$(TOOLSDIR)/set64bitConst.sh'
943    fi
944    
945  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
946    
# Line 557  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 949  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
949  #  they appear as regular source code  #  they appear as regular source code
950  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
951      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
952      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
953      RETVAL=$?      RETVAL=$?
954      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
955          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 587  echo "  getting package dependency info Line 979  echo "  getting package dependency info
979  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
980  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
981  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
982      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
983      > ./.pd_tmp      > ./.pd_tmp
984  RETVAL=$?  RETVAL=$?
985  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
986      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
987      exit 1      exit 1
988  fi  fi
989  source ./.pd_tmp  . ./.pd_tmp
990  rm -f ./.pd_tmp  rm -f ./.pd_tmp
991    
992  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
993    #  file should eventually be added so that, for convenience, one can
994    #  specify groups of packages using names like "ocean" and "atmosphere".
995    echo "  checking default package list:  "
996    if test "x${PDEFAULT}" = x ; then
997        for i in "." $MODS ; do
998            if test -r $i"/packages.conf" ; then
999                    PDEFAULT=$i"/packages.conf"
1000                    break
1001            fi
1002        done
1003    fi
1004  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1005      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1006  fi  fi
1007  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1008      echo "default packages file disabled"      echo "    default packages file disabled"
1009  else  else
1010      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1011          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1012      else      else
1013          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1014          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1015          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1016          RETVAL=$?          RETVAL=$?
1017          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1018              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 620  else Line 1022  else
1022          for i in $def ; do          for i in $def ; do
1023              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1024          done          done
1025          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1026            expand_pkg_groups
1027            echo "    after group expansion packages are:  $PACKAGES"
1028      fi      fi
1029  fi  fi
1030    
# Line 639  for p in $PACKAGES ; do Line 1043  for p in $PACKAGES ; do
1043  done  done
1044  PACKAGES="$pack"  PACKAGES="$pack"
1045  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1046  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1047  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1048  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1049      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 730  for i in $PACKAGES ; do Line 1134  for i in $PACKAGES ; do
1134      if test -d $adr ; then      if test -d $adr ; then
1135          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1136          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1137            if test "x$i" = xautodiff ; then
1138                AUTODIFF_PKG_USED=t
1139            fi
1140      else      else
1141          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1142          exit 1          exit 1
1143      fi      fi
1144  done  done
1145    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1146    
1147  echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  # Create a list of #define and #undef to enable/disable packages
1148  CPP_OPTIONS=  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1149  spaths="$SOURCEDIRS"  cat <<EOF >$PACKAGES_DOT_H".tmp"
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
1150  C=== GENMAKE v2 ===  C=== GENMAKE v2 ===
1151  C  The following defines have been set by GENMAKE, so please edit  C  The following defines have been set by GENMAKE, so please do not
1152  C  them only if you know what you're doing.  In general, you should  C  edit anything below these comments.  In general, you should
1153  C  add or remove packages by re-running genmake with different  C  add or remove packages by re-running genmake with different
1154  C  "-enable" and/or "-disable" options.  C  "-enable" and/or "-disable" options.
1155    
1156    #ifndef PACKAGES_H
1157    #define PACKAGES_H
1158    
1159  C  Packages disabled by genmake:  C  Packages disabled by genmake:
1160  EOF  EOF
1161  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
# Line 807  for n in $names ; do Line 1174  for n in $names ; do
1174              fi              fi
1175          done          done
1176          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1177              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1178              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1179          fi          fi
1180      fi      fi
1181  done  done
1182  cat <<EOF >>CPP_OPTIONS.h.tmp  cat <<EOF >>$PACKAGES_DOT_H".tmp"
1183    
1184  C  Packages enabled by genmake:  C  Packages enabled by genmake:
1185  EOF  EOF
1186  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1187      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1188      echo "#define $def" >> CPP_OPTIONS.h.tmp      echo "#define $def" >> $PACKAGES_DOT_H".tmp"
1189    #eh3 DEFINES="$DEFINES -D$def"
1190    
1191  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1192      case $i in      case $i in
1193          aim_v23)          aim_v23)
1194              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"
1195                DEFINES="$DEFINES -DALLOW_AIM"
1196                echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"
1197              ;;              ;;
1198      esac      esac
1199  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1200    
1201  done  done
1202  mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  cat <<EOF >>$PACKAGES_DOT_H".tmp"
1203    
1204    #endif /* PACKAGES_H */
1205    EOF
1206    
1207    if test ! -f $PACKAGES_DOT_H ; then
1208        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1209    else
1210        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1211        RETVAL=$?
1212        if test "x$RETVAL" = x0 ; then
1213            rm -f $PACKAGES_DOT_H".tmp"
1214        else
1215            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1216            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1217        fi
1218    fi
1219    
1220  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1221  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1222  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = x ; then
1223        STANDARDDIRS="eesupp model"
1224    fi
1225  for d in $STANDARDDIRS ; do  for d in $STANDARDDIRS ; do
1226      adr="$ROOTDIR/$d/src"      adr="$ROOTDIR/$d/src"
1227      if test ! -d $adr ; then      if test ! -d $adr ; then
# Line 871  for d in $STANDARDDIRS ; do Line 1241  for d in $STANDARDDIRS ; do
1241      fi      fi
1242  done  done
1243    
1244    echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"
1245    echo "    of \"#define ALLOW_PKGNAME\"-type statements:"
1246    CPP_OPTIONS=
1247    spaths=". $INCLUDEDIRS"
1248    for i in $spaths ; do
1249        try="$i/CPP_OPTIONS.h"
1250        #  echo -n "    trying $try : "
1251        if test -f $try -a -r $try ; then
1252            echo "    found CPP_OPTIONS=\"$try\""
1253            CPP_OPTIONS="$try"
1254            break
1255        fi
1256    done
1257    if test "x$CPP_OPTIONS" = x ; then
1258        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1259        exit 1
1260    fi
1261    # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1262    names=`ls -1 "$ROOTDIR/pkg"`
1263    for n in $names ; do
1264        test_for_package_in_cpp_options $CPP_OPTIONS $n
1265    done
1266    
1267    
1268    #  Here, we build the list of files to be "run through" the adjoint
1269    #  compiler.
1270    if test -f ./ad_files ; then
1271        rm -f ./ad_files
1272    fi
1273    echo "  Creating the list of files for the adjoint compiler."
1274    for i in $SOURCEDIRS ; do
1275        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1276        for j in $list_files ; do
1277            cat $i/$j >> ad_files
1278        done
1279    done
1280    
1281    cat <<EOF > adjoint_sed
1282    s/call adopen(/call adopen ( mythid,\\
1283         \&           /g
1284    s/call adclose(/call adclose( mythid,\\
1285         \&           /g
1286    s/call adread(/call adread ( mythid,\\
1287         \&           /g
1288    s/call adwrite(/call adwrite( mythid,\\
1289         \&           /g
1290    
1291    EOF
1292    
1293  echo  echo
1294  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1295  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1296  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1297      if test -d $i ; then      if ! test -d $i ; then
1298          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1299      else  #   else
1300          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1301      fi      fi
1302  done  done
# Line 892  echo -n 'SRCFILES = '    > srclist.inc Line 1310  echo -n 'SRCFILES = '    > srclist.inc
1310  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1311  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1312  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1313  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1314    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1315  for d in $alldirs ; do  for d in $alldirs ; do
1316      deplist=      deplist=
1317      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1318      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1319      for sf in $sfiles ; do      for sf in $sfiles ; do
1320          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1321              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1322                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1323                  touch .links.tmp/$sf                  touch .links.tmp/$sf
1324                  deplist="$deplist $sf"                  deplist="$deplist $sf"
1325                  case $extn in                  case $extn in
# Line 920  for d in $alldirs ; do Line 1339  for d in $alldirs ; do
1339                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1340                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1341                          ;;                          ;;
1342                        flow)
1343                            echo    " \\"  >> ad_flow_files.inc
1344                            echo -n " $sf" >> ad_flow_files.inc
1345                            ;;
1346                  esac                  esac
1347              fi              fi
1348          fi          fi
# Line 936  echo "" >> srclist.inc Line 1359  echo "" >> srclist.inc
1359  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1360  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1361  echo "" >> hlist.inc  echo "" >> hlist.inc
1362    echo "" >> ad_flow_files.inc
1363    
1364  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1365      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 949  echo "# by the command:" >> $MAKEFILE Line 1373  echo "# by the command:" >> $MAKEFILE
1373  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1374  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1375  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1376    
1377    EXE_AD=$EXECUTABLE"_ad"
1378    EXE_FTL=$EXECUTABLE"_ftl"
1379    EXE_SVD=$EXECUTABLE"_svd"
1380    
1381  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1382  #  #
1383  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
# Line 977  EXEDIR      = ${EXEDIR} Line 1406  EXEDIR      = ${EXEDIR}
1406  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1407  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1408    
1409    #eh3  new defines for the adjoint work
1410    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1411    EXE_AD      = ${EXE_AD}
1412    EXE_FTL     = ${EXE_FTL}
1413    EXE_SVD     = ${EXE_SVD}
1414    
1415  EOF  EOF
1416    
1417  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1022  MAKEFILE=${MAKEFILE} Line 1457  MAKEFILE=${MAKEFILE}
1457    
1458  EOF  EOF
1459    
1460  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1461  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1462  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1463  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1464    cat ad_flow_files.inc >> $MAKEFILE
1465    echo               >> $MAKEFILE
1466  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1467  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1468  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1469    
1470  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1471    rm -f ad_flow_files.inc
1472    
1473  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1474    
# Line 1043  all: \$(EXECUTABLE) Line 1481  all: \$(EXECUTABLE)
1481  depend:  depend:
1482          @make links          @make links
1483          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1484          ../../../tools/f90mkdepend >> \$(MAKEFILE)          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)
1485    
1486  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)
1487    
# Line 1054  output.txt: \$(EXECUTABLE) Line 1492  output.txt: \$(EXECUTABLE)
1492          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1493    
1494  clean:  clean:
1495            -cat AD_CONFIG.template > AD_CONFIG.h
1496          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}
1497  Clean:  Clean:
1498          @make clean          @make clean
1499          @make cleanlinks          @make cleanlinks
1500          -rm -f Makefile.bak          -rm -f Makefile.bak genmake_state genmake_*optfile genmake_warnings make.log
1501  CLEAN:  CLEAN:
1502          @make Clean          @make Clean
1503          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1504          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1505          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1506          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1507    
1508    #eh3 Makefile: makefile
1509  makefile:  makefile:
1510          ${0} $@          ${0} $@
1511  cleanlinks:  cleanlinks:
# Line 1089  cleanlinks: Line 1529  cleanlinks:
1529  .p.f:  .p.f:
1530          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1531    
1532    #=========================================
1533    #===  Automatic Differentiation Rules  ===
1534    
1535    TAMC           = ${TAMC}
1536    TAF            = ${TAF}
1537    
1538    TAF_EXTRA      = ${TAF_EXTRA}
1539    TAMC_EXTRA     = ${TAMC_EXTRA}
1540    
1541    EOF
1542    
1543    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1544    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1545    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1546    for i in $ad_vars ; do
1547        name=$i
1548        t1="t2=\$"`echo $i`
1549        eval $t1
1550        printf "%-20s = " $name >> $MAKEFILE
1551        echo $t2 >> $MAKEFILE
1552    done
1553    
1554    echo "  Add the source list for AD code generation"
1555    echo >> $MAKEFILE
1556    echo -n "AD_FILES = " >> $MAKEFILE
1557    AD_FILES=`cat ad_files`
1558    for i in $AD_FILES ; do
1559        echo    " \\" >> $MAKEFILE
1560        echo -n " $i" >> $MAKEFILE
1561    done
1562    echo >> $MAKEFILE
1563    rm -f ad_files
1564    
1565    cat >>$MAKEFILE <<EOF
1566    
1567    # ... AD ...
1568    adall: ad_taf
1569    adtaf: ad_taf_output.f
1570    adtamc: ad_tamc_output.f
1571    
1572    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1573            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1574            @make \$(F77FILES)
1575            @make \$(AD_FLOW_FILES)
1576            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1577    
1578    ad_taf_output.f: ad_input_code.f
1579            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1580            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f
1581    
1582    adtafonly:
1583            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1584            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f
1585    
1586    ad_taf: ad_taf_output.o \$(OBJFILES)
1587            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1588    
1589    ad_tamc_output.f: ad_input_code.f
1590            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1591            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f
1592    
1593    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1594            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1595    
1596    
1597    # ... FTL ...
1598    ftlall: ftl_taf
1599    ftltaf: ftl_taf_output.f
1600    ftltamc: ftl_tamc_output.f
1601    
1602    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1603            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1604            @make \$(F77FILES)
1605            @make \$(AD_FLOW_FILES)
1606            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1607    
1608    ftl_taf_output.f: ftl_input_code.f
1609            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1610            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f
1611    
1612    ftltafonly:
1613            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1614            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f
1615    
1616    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1617            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1618    
1619    ftl_tamc_output.f: ftl_input_code.f
1620            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1621            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f
1622    
1623    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1624            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1625    
1626    
1627    # ... SVD ...
1628    svdtaf: ad_taf_output.f ftl_taf_output.f
1629    svdall: svd_taf
1630    
1631    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1632            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1633    
1634    
1635    #=========================================
1636    
1637  EOF  EOF
1638    
1639    if test "x$EXEHOOK" != x ; then
1640        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
1641    fi
1642    
1643  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
1644  for i in $KPPFILES ; do  for i in $KPPFILES ; do
1645      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 1120  echo "  Adding makedepend marker" Line 1669  echo "  Adding makedepend marker"
1669  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
1670    
1671  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1672    
1673    #  Write the "template" files for the adjoint builds
1674    cat >AD_CONFIG.template <<EOF
1675    C  WARNING: This file is automatically generated by genmake2 and
1676    C    used by the Makefile rules.  Please DO NOT EDIT this file
1677    C    unless you are CERTAIN that you know what you are doing.
1678    
1679    #undef ALLOW_ADJOINT_RUN
1680    #undef ALLOW_TANGENTLINEAR_RUN
1681    #undef ALLOW_ECCO_OPTIMIZATION
1682    EOF
1683    cat >ad_config.template <<EOF
1684    C  WARNING: This file is automatically generated by genmake2 and
1685    C    used by the Makefile rules.  Please DO NOT EDIT this file
1686    C    unless you are CERTAIN that you know what you are doing.
1687    
1688    #define ALLOW_ADJOINT_RUN
1689    #undef ALLOW_TANGENTLINEAR_RUN
1690    #undef ALLOW_ECCO_OPTIMIZATION
1691    EOF
1692    cat >ftl_config.template <<EOF
1693    C  WARNING: This file is automatically generated by genmake2 and
1694    C    used by the Makefile rules.  Please DO NOT EDIT this file
1695    C    unless you are CERTAIN that you know what you are doing.
1696    
1697    #undef ALLOW_ADJOINT_RUN
1698    #define ALLOW_TANGENTLINEAR_RUN
1699    #undef ALLOW_ECCO_OPTIMIZATION
1700    EOF
1701    cat >svd_config.template <<EOF
1702    C  WARNING: This file is automatically generated by genmake2 and
1703    C    used by the Makefile rules.  Please DO NOT EDIT this file
1704    C    unless you are CERTAIN that you know what you are doing.
1705    
1706    #undef ALLOW_ADJOINT_RUN
1707    #undef ALLOW_TANGENTLINEAR_RUN
1708    #undef ALLOW_ECCO_OPTIMIZATION
1709    EOF
1710    cp AD_CONFIG.template AD_CONFIG.h
1711    
1712    
1713    #  Write the "state" for future records
1714    if test "x$DUMPSTATE" != xf ; then
1715        echo -n "" > genmake_state
1716        for i in $gm_state ; do
1717            t1="t2=\$$i"
1718            eval $t1
1719            echo "$i='$t2'" >> genmake_state
1720        done
1721    fi

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