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revision 1.12 by edhill, Thu Oct 9 04:19:20 2003 UTC revision 1.41 by edhill, Thu Nov 20 00:25:43 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #!/bin/sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 46  expand_pkg_groups() { Line 46  expand_pkg_groups() {
46      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"      PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
47      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
48          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
49          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
50          matched=0          matched=0
51          for i in $PACKAGES ; do          for i in $PACKAGES ; do
52              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" ./p2.tmp`
53              RETVAL=$?              RETVAL=$?
54              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
55                  matched=1                  matched=1
56                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
57                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with: $replace"
58                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
59              else              else
# Line 72  find_possible_configs()  { Line 72  find_possible_configs()  {
72    
73      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
74      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
75      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
76        PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
77      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
78      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
79            
80      echo "test" > test      echo "test" > test
81      ln -s ./test link      ln -s ./test link
# Line 103  find_possible_configs()  { Line 93  find_possible_configs()  {
93          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
94      fi      fi
95    
96        # makedepend is not always available
97        if test "x${MAKEDEPEND}" = x ; then
98          which makedepend >& /dev/null
99          RETVAL=$?
100          if test "x${RETVAL}" = x1 ; then
101             echo "    makedepend was not found. Using xmakedpend instead."
102             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
103          fi
104        fi
105    
106      # look for possible fortran compilers      # look for possible fortran compilers
107      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
108      p_FC=      p_FC=
109      for c in $tmp ; do      for c in $tmp ; do
110          rm -f ./hello.f ./hello          rm -f ./hello.f ./hello
# Line 121  EOF Line 121  EOF
121              p_FC="$p_FC $c"              p_FC="$p_FC $c"
122          fi          fi
123      done      done
124        rm -f ./hello.f ./hello
125      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
126          cat 1>&2 <<EOF          cat 1>&2 <<EOF
127    
# Line 136  EOF Line 137  EOF
137          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are:"
138          echo "   "$p_FC          echo "   "$p_FC
139          if test "x$FC" = x ; then          if test "x$FC" = x ; then
140              FC=`echo $p_FC | awk '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
141          fi          fi
142      fi      fi
143    
# Line 202  get_pdepend_list()  { Line 203  get_pdepend_list()  {
203      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
204      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
205      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
206          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
207          > ./.pd_tmp          > ./.pd_tmp
208      source ./.pd_tmp      . ./.pd_tmp
209      rm -f ./.pd_tmp      rm -f ./.pd_tmp
210    
211      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 213  get_pdepend_list()  { Line 214  get_pdepend_list()  {
214    
215  #  Explain usage  #  Explain usage
216  usage()  {  usage()  {
217      echo  cat <<EOF
218      echo "Usage: "$0" [OPTIONS]"  
219      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
220      echo    where [OPTIONS] can be:
221      echo "    -help | --help | -h | --h"  
222      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
223      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
224      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
225      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
226      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
227      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
228      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
229      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
230      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
231      echo "    -makefile NAME | -mf NAME"  
232      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
233      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
234      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
235      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
236      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
237      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
238      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
239      echo "    -disable NAME | --disable NAME"  
240      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
241      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
242      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
243      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
244      echo "      -standarddirs=NAME | --standarddirs=NAME"  
245      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
246      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
247  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
248  #    echo "      -cpp=NAME | --cpp=NAME"  
249      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
250      echo "      -fc=NAME | --fc=NAME"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
251      echo "    -[no]ieee | --[no]ieee"            Specify the location of the MITgcm ROOTDIR as "NAME".
252      echo "    -[no]mpi | --[no]mpi"            By default, genamke will try to find the location by
253      echo "    -[no]jam | --[no]jam"            looking in parent directories (up to the 5th parent).
254      echo  
255      echo "  and NAME is a string such as:"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
256      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
257      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Here, "NAME" specifies a list of directories that are
258      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            used for additional source code.  Files found in the
259      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            "mods list" are given preference over files of the same
260      echo            name found elsewhere.
261      echo "  which, depending upon your shell, may need to be single-quoted"  
262      echo "  if it contains spaces, dashes, or other special characters."      -disable NAME | --disable NAME
263          -disable=NAME | --disable=NAME
264              Here "NAME" specifies a list of packages that we don't
265              want to use.  If this violates package dependencies,
266              genamke will exit with an error message.
267    
268        -enable NAME | --enable NAME
269          -enable=NAME | --enable=NAME
270              Here "NAME" specifies a list of packages that we wish
271              to specifically enable.  If this violates package
272              dependencies, genamke will exit with an error message.
273    
274        -standarddirs NAME | --standarddirs NAME
275          -standarddirs=NAME | --standarddirs=NAME
276              Here, "NAME" specifies a list of directories to be
277              used as the "standard" code.
278    
279        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
280          -fc=NAME | --fc=NAME
281              Use "NAME" as the fortran compiler.  By default, genmake
282              will search for a working compiler by trying a list of
283              "usual suspects" such as g77, f77, etc.
284    
285        -[no]ieee | --[no]ieee
286              Do or don't use IEEE numerics.  Note that this option
287              *only* works if it is supported by the OPTFILE that
288              is being used.
289    
290      While it is most often a single word, the "NAME" variables specified
291      above can in many cases be a space-delimited string such as:
292    
293        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
294        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
295        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
296    
297      which, depending upon your shell, may need to be single-quoted.
298    
299      For more detailed genmake documentation, please see:
300    
301        http://mitgcm.org/devel_HOWTO/
302    
303    EOF
304    
305      exit 1      exit 1
306  }  }
307    
308  #eh3 # This is the generic configuration.  #  Build a CPP macro to automate calling C routines from FORTRAN
309  #eh3 set LN         = ( 'ln -s' )  get_fortran_c_namemangling()  {
310  #eh3 set CPP        = ( '/lib/cpp -P' )      default_nm="#define FC_NAMEMANGLE(X) X ## _"
311  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      
312  #eh3 set KPP        = (  )      cat > genmake_test.c <<EOF
313  #eh3 set FC         = ( 'f77' )  void tcall( char * string ) { tsub( string ); }
314  #eh3 set LINK       = $FC  EOF
315  #eh3 set MAKEDEPEND = ( 'makedepend' )      $MAKE genmake_test.o >> genmake_warnings 2>&1
316  #eh3 set INCLUDES   = ( -I. )      RETVAL=$?
317  #eh3 set FFLAGS     = (  )      if test "x$RETVAL" != x0 ; then
318  #eh3 set FOPTIM     = (  )          FC_NAMEMANGLE=$default_nm
319  #eh3 set CFLAGS     = (  )          cat <<EOF>> genmake_errors
320  #eh3 set KFLAGS1    = (  )  
321  #eh3 set KFLAGS2    = (  )  WARNING: C test compile fails
322  #eh3 set LIBS       = (  )  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
323  #eh3 set KPPFILES   = (  )  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
324  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
325  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )          return 1
326        fi
327        c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`
328        RETVAL=$?
329        if test "x$RETVAL" != x0 ; then
330            FC_NAMEMANGLE=$default_nm
331            cat <<EOF>> genmake_warnings
332    
333    WARNING: The "nm" command failed.
334    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
335    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
336    EOF
337            return 1
338        fi
339        cat > genmake_tcomp.f <<EOF
340          subroutine tcall( string )
341          character*(*) string
342          call tsub( string )
343          end
344    EOF
345        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
346        RETVAL=$?
347        if test "x$RETVAL" != x0 ; then
348            FC_NAMEMANGLE=$default_nm
349            cat <<EOF>> genmake_warnings
350    
351    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
352    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
353    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
354    EOF
355            return 1
356        fi
357        f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`
358        RETVAL=$?
359        if test "x$RETVAL" != x0 ; then
360            FC_NAMEMANGLE=$default_nm
361            cat <<EOF>> genmake_warnings
362    
363    WARNING: The "nm" command failed.
364    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
365    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
366    EOF
367            return 1
368        fi
369    
370        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
371        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
372        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
373        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
374    
375        nmangle="X"
376        if test "x$c_a" != "x$f_a" ; then
377            comm="echo x$f_a | sed -e 's|x$c_a||'"
378            a=`eval $comm`
379            nmangle="$a ## $nmangle"
380        fi
381        if test "x$c_b" != "x$f_b" ; then
382            comm="echo x$f_b | sed -e 's|x$c_b||'"
383            b=`eval $comm`
384            nmangle="$nmangle ## $b"
385        fi
386    
387        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
388    
389        #  cleanup the testing files
390        rm -f genmake_tcomp.* genmake_test.*
391    }
392    
393    
394    check_HAVE_CLOC()  {
395        get_fortran_c_namemangling
396        cat <<EOF > genmake_tc_1.c
397    $FC_NAMEMANGLE
398    #include <stdio.h>
399    #include <stdlib.h>
400    #include <unistd.h>
401    #include <assert.h>
402    #include <sys/time.h>
403    void FC_NAMEMANGLE(cloc) ( double *curtim )
404    {
405     struct timeval tv1;
406     gettimeofday(&tv1 , (void *)NULL );
407     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
408     *curtim = *curtim/1.E6;
409    }
410    EOF
411        make genmake_tc_1.o >> genmake_tc.log 2>&1
412        RET_C=$?
413        cat <<EOF > genmake_tc_2.f
414          program hello
415          Real*8 wtime
416          external cloc
417          call cloc(wtime)
418          print *," HELLO WORLD", wtime
419          end program hello
420    EOF
421        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
422        RET_F=$?
423        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
424        RETVAL=$?
425        if test "x$RETVAL" = x0 ; then
426            HAVE_CLOC=t
427            DEFINES="$DEFINES -DHAVE_CLOC"
428        fi
429        rm -f genmake_tc*
430    }
431    
432    
433  #  Set defaults here  #  Set defaults here
434  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 290  S64= Line 439  S64=
439  KPP=  KPP=
440  FC=  FC=
441  LINK=  LINK=
442  DEFINES="-DWORDLENGTH=4"  # DEFINES="-DWORDLENGTH=4"
443    DEFINES=
444  PACKAGES=  PACKAGES=
445  ENABLE=  ENABLE=
446  DISABLE=  DISABLE=
# Line 311  KPPFILES= Line 461  KPPFILES=
461  NOOPTFILES=  NOOPTFILES=
462  NOOPTFLAGS=  NOOPTFLAGS=
463    
464    # DEFINES checked by test compilation
465    HAVE_SYSTEM=
466    HAVE_FDATE=
467    FC_NAMEMANGLE=
468    HAVE_CLOC=
469    
470  MODS=  MODS=
471  TOOLSDIR=  TOOLSDIR=
472  SOURCEDIRS=  SOURCEDIRS=
# Line 319  STANDARDDIRS= Line 475  STANDARDDIRS=
475    
476  PWD=`pwd`  PWD=`pwd`
477  MAKE=make  MAKE=make
478    AWK=awk
479  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
480  THISCWD=`pwd`  THISCWD=`pwd`
481  THISDATE=`date`  THISDATE=`date`
# Line 332  if test "x$MITGCM_IEEE" != x ; then Line 489  if test "x$MITGCM_IEEE" != x ; then
489      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
490  fi  fi
491    
492    AUTODIFF_PKG_USED=f
493    AD_OPTFILE=
494    TAF=
495    AD_TAF_FLAGS=
496    FTL_TAF_FLAGS=
497    SVD_TAF_FLAGS=
498    TAF_EXTRA=
499    TAMC=
500    AD_TAMC_FLAGS=
501    FTL_TAF_FLAGS=
502    SVD_TAMC_FLAGS=
503    TAMC_EXTRA=
504    
505    
506  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
507  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
508  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
509    
510  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
# Line 341  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPE Line 512  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPE
512  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
513  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
514  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
515    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
516    
517  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6"  #  The following are all related to adjoint/tangent-linear stuff
518    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
519    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
520    gm_s12="TAF_EXTRA TAMC_EXTRA"
521    
522    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
523    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
524    
525    cat <<EOF
526    
527    GENMAKE :
528    
529    A program for GENerating MAKEfiles for the MITgcm project.  For a
530    quick list of options, use "genmake -h" or for more detail see:
531    
532      http://mitgcm.org/devel_HOWTO/
533    
534    EOF
535    
 echo  
536  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
537  gm_local="genmake_local"  gm_local="genmake_local"
538  for i in . $MODS ; do  for i in . $MODS ; do
539      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
540          source $i/$gm_local          . $i/$gm_local
541          break          break
542      fi      fi
543  done  done
544  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
545  if test -e $gm_local ; then  if test -e $gm_local ; then
546      echo "using $gm_local"      echo "using $gm_local"
547      source $gm_local      . $gm_local
548      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
549      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
550  else  else
# Line 375  fi Line 562  fi
562  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
563  #done  #done
564  #parse_options  #parse_options
   
565  ac_prev=  ac_prev=
566  for ac_option ; do  for ac_option ; do
567    
# Line 400  for ac_option ; do Line 586  for ac_option ; do
586          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
587              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
588                    
589            -adoptfile | --adoptfile | -ad | --ad)
590                ac_prev=AD_OPTFILE ;;
591            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
592                AD_OPTFILE=$ac_optarg ;;
593            
594          -pdepend | --pdepend)          -pdepend | --pdepend)
595              ac_prev=PDEPEND ;;              ac_prev=PDEPEND ;;
596          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 420  for ac_option ; do Line 611  for ac_option ; do
611          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
612              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
613                    
614          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
615              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
616          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
617              PLATFORM=$ac_optarg ;;              echo
618                usage
619                ;;
620                    
621          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
622              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 450  for ac_option ; do Line 643  for ac_option ; do
643          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
644              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
645    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
646  #           -cpp | --cpp)  #           -cpp | --cpp)
647  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
648  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 470  for ac_option ; do Line 658  for ac_option ; do
658          -noieee | --noieee)          -noieee | --noieee)
659              IEEE= ;;              IEEE= ;;
660                    
661          -mpi | --mpi)  #       -jam | --jam)
662              MPI=true ;;  #           JAM=1 ;;
663          -nompi | --nompi)  #       -nojam | --nojam)
664              MPI= ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
665                    
666          -ds | --ds)          -ds | --ds)
667              DUMPSTATE=t ;;              DUMPSTATE=t ;;
668                    
669            -taf_extra | --taf_extra)
670                ac_prev=TAF_EXTRA ;;
671            -taf_extra=* | --taf_extra=*)
672                TAF_EXTRA=$ac_optarg ;;
673    
674            -tamc_extra | --tamc_extra)
675                ac_prev=TAMC_EXTRA ;;
676            -tamc_extra=* | --tamc_extra=*)
677                TAMC_EXTRA=$ac_optarg ;;
678    
679          -*)          -*)
680              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
681              usage              usage
# Line 547  fi Line 740  fi
740  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
741      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
742          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
743          source "$OPTFILE"          . "$OPTFILE"
744          RETVAL=$?          RETVAL=$?
745          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
746              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 563  if test "x$OPTFILE" != xNONE ; then Line 756  if test "x$OPTFILE" != xNONE ; then
756      fi      fi
757  fi  fi
758    
759  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  echo "  getting AD_OPTFILE information:  "
760  #  and abort!  if test "x${AD_OPTFILE}" = x ; then
761        if test "x$MITGCM_AD_OF" = x ; then
762            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
763        else
764            AD_OPTFILE=$MITGCM_AD_OF
765        fi
766    fi
767    if test "x${AD_OPTFILE}" != xNONE ; then
768        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
769            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
770            . "$AD_OPTFILE"
771            RETVAL=$?
772            if test "x$RETVAL" != x0 ; then
773                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
774                echo "--please check that variable syntax is bash-compatible"
775                exit 1
776            fi
777            if test "x$DUMPSTATE" != xf ; then
778                cp -f $AD_OPTFILE "genmake_ad_optfile"
779            fi
780        else
781            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
782            exit 1
783        fi
784    fi
785    
786    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
787    #  either set defaults or complain and abort!
788  if test "x$FC" = x ; then  if test "x$FC" = x ; then
789      cat <<EOF 1>&2      cat <<EOF 1>&2
790    
# Line 581  fi Line 801  fi
801  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
802      CPP="cpp"      CPP="cpp"
803  fi  fi
804  echo "#define A a" | cpp > test_cpp 2>&1  if test "x$MAKE" = x ; then
805        MAKE="make"
806    fi
807    echo "#define A a" | $CPP > test_cpp 2>&1
808  RETVAL=$?  RETVAL=$?
809  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
810      cat <<EOF 1>&2      cat <<EOF 1>&2
# Line 590  Error: C pre-processor "$CPP" failed the Line 813  Error: C pre-processor "$CPP" failed the
813    
814    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
815    2) the "./genmake_local" file    2) the "./genmake_local" file
816      3) with the CPP environment variable
817    
818  EOF  EOF
819      exit 1      exit 1
# Line 599  fi Line 823  fi
823  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
824      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
825  fi  fi
826    if test "x$LN" = x ; then
827        LN="ln -s"
828    fi
829    echo "test" > genmake_test_ln
830    $LN genmake_test_ln genmake_tlink
831    RETVAL=$?
832    if test "x$RETVAL" != x0 ; then
833        cat <<EOF 1>&2
834    
835    Error: The command "ln -s" failed -- please specify a working soft-link
836      command in the optfile.
837    
838    EOF
839        exit 1
840    fi
841    rm -f genmake_test_ln genmake_tlink
842    
843    
844    printf "\n===  Checking system libraries  ===\n"
845    echo -n "  Do we have the system() command using $FC...  "
846    cat > genmake_tcomp.f <<EOF
847          program hello
848          call system('echo hi')
849          end
850    EOF
851    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
852    RETVAL=$?
853    if test "x$RETVAL" = x0 ; then
854        HAVE_SYSTEM=t
855        DEFINES="$DEFINES -DHAVE_SYSTEM"
856        echo "yes"
857    else
858        HAVE_SYSTEM=
859        echo "no"
860    fi
861    rm -f genmake_tcomp*
862    
863    echo -n "  Do we have the fdate() command using $FC...  "
864    cat > genmake_tcomp.f <<EOF
865          program hello
866          CHARACTER(128) string
867          string = ' '
868          call fdate( string )
869          print *, string
870          end
871    EOF
872    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
873    RETVAL=$?
874    if test "x$RETVAL" = x0 ; then
875        HAVE_FDATE=t
876        DEFINES="$DEFINES -DHAVE_FDATE"
877        echo "yes"
878    else
879        HAVE_FDATE=
880        echo "no"
881    fi
882    rm -f genmake_tcomp*
883    
884    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
885    check_HAVE_CLOC
886    if test "x$HAVE_CLOC" != x ; then
887        echo "yes"
888    else
889        echo "no"
890    fi
891    echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template
892    cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1
893    RETVAL=$?
894    if test "x$RETVAL" != x0 ; then
895        mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h
896    fi
897    rm -f genmake_t*
898    
899    
900  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
901  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 652  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 949  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
949  #  they appear as regular source code  #  they appear as regular source code
950  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
951      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
952      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
953      RETVAL=$?      RETVAL=$?
954      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
955          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 682  echo "  getting package dependency info Line 979  echo "  getting package dependency info
979  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
980  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
981  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
982      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
983      > ./.pd_tmp      > ./.pd_tmp
984  RETVAL=$?  RETVAL=$?
985  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
986      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
987      exit 1      exit 1
988  fi  fi
989  source ./.pd_tmp  . ./.pd_tmp
990  rm -f ./.pd_tmp  rm -f ./.pd_tmp
991    
992  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
993  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
994  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
995  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
996  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
997      for i in "." $MODS ; do      for i in "." $MODS ; do
998          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 708  if test "x${PDEFAULT}" = x ; then Line 1005  if test "x${PDEFAULT}" = x ; then
1005      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1006  fi  fi
1007  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1008      echo "default packages file disabled"      echo "    default packages file disabled"
1009  else  else
1010      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1011          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1012      else      else
1013          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1014          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1015          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1016          RETVAL=$?          RETVAL=$?
1017          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1018              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 838  for i in $PACKAGES ; do Line 1134  for i in $PACKAGES ; do
1134      if test -d $adr ; then      if test -d $adr ; then
1135          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1136          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1137            if test "x$i" = xautodiff ; then
1138                AUTODIFF_PKG_USED=t
1139            fi
1140      else      else
1141          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1142          exit 1          exit 1
1143      fi      fi
1144  done  done
1145    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
1146    
1147  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1148  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
# Line 893  for n in $names ; do Line 1174  for n in $names ; do
1174              fi              fi
1175          done          done
1176          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1177              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1178              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1179          fi          fi
1180      fi      fi
1181  done  done
# Line 919  cat <<EOF >>$PACKAGES_DOT_H".tmp" Line 1184  cat <<EOF >>$PACKAGES_DOT_H".tmp"
1184  C  Packages enabled by genmake:  C  Packages enabled by genmake:
1185  EOF  EOF
1186  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1187      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1188      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      echo "#define $def" >> $PACKAGES_DOT_H".tmp"
1189  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1190    
# Line 976  for d in $STANDARDDIRS ; do Line 1241  for d in $STANDARDDIRS ; do
1241      fi      fi
1242  done  done
1243    
1244  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"
1245  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"
1246  CPP_OPTIONS=  CPP_OPTIONS=
1247  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1248  for i in $spaths ; do  for i in $spaths ; do
# Line 1000  for n in $names ; do Line 1265  for n in $names ; do
1265  done  done
1266    
1267    
1268    #  Here, we build the list of files to be "run through" the adjoint
1269    #  compiler.
1270    if test -f ./ad_files ; then
1271        rm -f ./ad_files
1272    fi
1273    echo "  Creating the list of files for the adjoint compiler."
1274    for i in $SOURCEDIRS ; do
1275        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1276        for j in $list_files ; do
1277            cat $i/$j >> ad_files
1278        done
1279    done
1280    
1281    cat <<EOF > adjoint_sed
1282    s/call adopen(/call adopen ( mythid,\\
1283         \&           /g
1284    s/call adclose(/call adclose( mythid,\\
1285         \&           /g
1286    s/call adread(/call adread ( mythid,\\
1287         \&           /g
1288    s/call adwrite(/call adwrite( mythid,\\
1289         \&           /g
1290    
1291    EOF
1292    
1293  echo  echo
1294  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1295  echo "  setting INCLUDES"  echo "  setting INCLUDES"
# Line 1020  echo -n 'SRCFILES = '    > srclist.inc Line 1310  echo -n 'SRCFILES = '    > srclist.inc
1310  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1311  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1312  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1313    echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1314  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1315  for d in $alldirs ; do  for d in $alldirs ; do
1316      deplist=      deplist=
1317      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1318      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1319      for sf in $sfiles ; do      for sf in $sfiles ; do
1320          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1321              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1322                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1323                  touch .links.tmp/$sf                  touch .links.tmp/$sf
1324                  deplist="$deplist $sf"                  deplist="$deplist $sf"
1325                  case $extn in                  case $extn in
# Line 1048  for d in $alldirs ; do Line 1339  for d in $alldirs ; do
1339                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1340                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1341                          ;;                          ;;
1342                        flow)
1343                            echo    " \\"  >> ad_flow_files.inc
1344                            echo -n " $sf" >> ad_flow_files.inc
1345                            ;;
1346                  esac                  esac
1347              fi              fi
1348          fi          fi
# Line 1064  echo "" >> srclist.inc Line 1359  echo "" >> srclist.inc
1359  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1360  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1361  echo "" >> hlist.inc  echo "" >> hlist.inc
1362    echo "" >> ad_flow_files.inc
1363    
1364  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1365      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 1077  echo "# by the command:" >> $MAKEFILE Line 1373  echo "# by the command:" >> $MAKEFILE
1373  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1374  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1375  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1376    
1377    EXE_AD=$EXECUTABLE"_ad"
1378    EXE_FTL=$EXECUTABLE"_ftl"
1379    EXE_SVD=$EXECUTABLE"_svd"
1380    
1381  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1382  #  #
1383  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
# Line 1105  EXEDIR      = ${EXEDIR} Line 1406  EXEDIR      = ${EXEDIR}
1406  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1407  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1408    
1409    #eh3  new defines for the adjoint work
1410    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1411    EXE_AD      = ${EXE_AD}
1412    EXE_FTL     = ${EXE_FTL}
1413    EXE_SVD     = ${EXE_SVD}
1414    
1415  EOF  EOF
1416    
1417  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1150  MAKEFILE=${MAKEFILE} Line 1457  MAKEFILE=${MAKEFILE}
1457    
1458  EOF  EOF
1459    
1460  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1461  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1462  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1463  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1464    cat ad_flow_files.inc >> $MAKEFILE
1465    echo               >> $MAKEFILE
1466  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1467  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1468  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1469    
1470  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1471    rm -f ad_flow_files.inc
1472    
1473  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1474    
# Line 1182  output.txt: \$(EXECUTABLE) Line 1492  output.txt: \$(EXECUTABLE)
1492          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1493    
1494  clean:  clean:
1495            -cat AD_CONFIG.template > AD_CONFIG.h
1496          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}
1497  Clean:  Clean:
1498          @make clean          @make clean
1499          @make cleanlinks          @make cleanlinks
1500          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f Makefile.bak genmake_state genmake_*optfile make.log
1501  CLEAN:  CLEAN:
1502          @make Clean          @make Clean
1503          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1194  CLEAN: Line 1505  CLEAN:
1505          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1506          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt
1507    
1508    #eh3 Makefile: makefile
1509  makefile:  makefile:
1510          ${0} $@          ${0} $@
1511  cleanlinks:  cleanlinks:
# Line 1217  cleanlinks: Line 1529  cleanlinks:
1529  .p.f:  .p.f:
1530          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1531    
1532    #=========================================
1533    #===  Automatic Differentiation Rules  ===
1534    
1535    TAMC           = ${TAMC}
1536    TAF            = ${TAF}
1537    
1538    TAF_EXTRA      = ${TAF_EXTRA}
1539    TAMC_EXTRA     = ${TAMC_EXTRA}
1540    
1541    EOF
1542    
1543    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1544    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1545    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1546    for i in $ad_vars ; do
1547        name=$i
1548        t1="t2=\$"`echo $i`
1549        eval $t1
1550        printf "%-20s = " $name >> $MAKEFILE
1551        echo $t2 >> $MAKEFILE
1552    done
1553    
1554    echo "  Add the source list for AD code generation"
1555    echo >> $MAKEFILE
1556    echo -n "AD_FILES = " >> $MAKEFILE
1557    AD_FILES=`cat ad_files`
1558    for i in $AD_FILES ; do
1559        echo    " \\" >> $MAKEFILE
1560        echo -n " $i" >> $MAKEFILE
1561    done
1562    echo >> $MAKEFILE
1563    rm -f ad_files
1564    
1565    cat >>$MAKEFILE <<EOF
1566    
1567    # ... AD ...
1568    adall: ad_taf
1569    adtaf: ad_taf_output.f
1570    adtamc: ad_tamc_output.f
1571    
1572    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1573            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1574            @make \$(F77FILES)
1575            @make \$(AD_FLOW_FILES)
1576            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1577    
1578    ad_taf_output.f: ad_input_code.f
1579            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1580            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f
1581    
1582    adtafonly:
1583            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1584            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f
1585    
1586    ad_taf: ad_taf_output.o \$(OBJFILES)
1587            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1588    
1589    ad_tamc_output.f: ad_input_code.f
1590            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1591            cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f
1592    
1593    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1594            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1595    
1596    
1597    # ... FTL ...
1598    ftlall: ftl_taf
1599    ftltaf: ftl_taf_output.f
1600    ftltamc: ftl_tamc_output.f
1601    
1602    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1603            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1604            @make \$(F77FILES)
1605            @make \$(AD_FLOW_FILES)
1606            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1607    
1608    ftl_taf_output.f: ftl_input_code.f
1609            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1610            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f
1611    
1612    ftltafonly:
1613            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1614            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f
1615    
1616    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1617            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1618    
1619    ftl_tamc_output.f: ftl_input_code.f
1620            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1621            cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f
1622    
1623    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1624            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1625    
1626    
1627    # ... SVD ...
1628    svdtaf: ad_taf_output.f ftl_taf_output.f
1629    svdall: svd_taf
1630    
1631    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1632            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1633    
1634    
1635    #=========================================
1636    
1637  EOF  EOF
1638    
1639  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
# Line 1253  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1670  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1670    
1671  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1672    
1673    #  Write the "template" files for the adjoint builds
1674    cat >AD_CONFIG.template <<EOF
1675    C  WARNING: This file is automatically generated by genmake2 and
1676    C    used by the Makefile rules.  Please DO NOT EDIT this file
1677    C    unless you are CERTAIN that you know what you are doing.
1678    
1679    #undef ALLOW_ADJOINT_RUN
1680    #undef ALLOW_TANGENTLINEAR_RUN
1681    #undef ALLOW_ECCO_OPTIMIZATION
1682    EOF
1683    cat >ad_config.template <<EOF
1684    C  WARNING: This file is automatically generated by genmake2 and
1685    C    used by the Makefile rules.  Please DO NOT EDIT this file
1686    C    unless you are CERTAIN that you know what you are doing.
1687    
1688    #define ALLOW_ADJOINT_RUN
1689    #undef ALLOW_TANGENTLINEAR_RUN
1690    #undef ALLOW_ECCO_OPTIMIZATION
1691    EOF
1692    cat >ftl_config.template <<EOF
1693    C  WARNING: This file is automatically generated by genmake2 and
1694    C    used by the Makefile rules.  Please DO NOT EDIT this file
1695    C    unless you are CERTAIN that you know what you are doing.
1696    
1697    #undef ALLOW_ADJOINT_RUN
1698    #define ALLOW_TANGENTLINEAR_RUN
1699    #undef ALLOW_ECCO_OPTIMIZATION
1700    EOF
1701    cat >svd_config.template <<EOF
1702    C  WARNING: This file is automatically generated by genmake2 and
1703    C    used by the Makefile rules.  Please DO NOT EDIT this file
1704    C    unless you are CERTAIN that you know what you are doing.
1705    
1706    #undef ALLOW_ADJOINT_RUN
1707    #undef ALLOW_TANGENTLINEAR_RUN
1708    #undef ALLOW_ECCO_OPTIMIZATION
1709    EOF
1710    cp AD_CONFIG.template AD_CONFIG.h
1711    
1712    
1713  #  Write the "state" for future records  #  Write the "state" for future records
1714  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then

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