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revision 1.4 by edhill, Tue Aug 26 16:22:15 2003 UTC revision 1.247 by jahn, Wed Dec 26 17:20:01 2012 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16  # Guess possible config options for this host  Usage: "$0" [OPTIONS]
17  find_possible_configs()  {    where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172    # Search for particular CPP #cmds associated with packages
173    # usage: test_for_package_in_cpp_options CPP_file package_name
174    test_for_package_in_cpp_options() {
175        cpp_options=$1
176        pkg=$2
177        test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178        test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179        test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180        test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181    }
182    
183      p_PLATFORM=`uname`"-"`uname -m`  # Search for particular CPP #cmds associated with MPI
184      echo "The platform appears to be:"  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185      echo "  "$p_PLATFORM  test_for_mpi_in_cpp_eeoptions() {
186        cpp_options=$1
187      p_LN=      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      echo "test" > test      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
189      ln -s ./test link  }
190    
191    # Search for particular string in a file. Return 1 if detected, 0 if not
192    # usage: test_for_string_in_file file string
193    test_for_string_in_file() {
194        file=$1
195        strng=$2
196        grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          p_LN="ln -s"          printf "Error: In $file there is an illegal line: "
200            grep -i "$strng" $file
201            exit 99
202        fi
203        return 0
204    }
205    
206    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
207    # the package list.
208    expand_pkg_groups() {
209        new_packages=
210        if test -r $PKG_GROUPS ; then
211            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
213            matched=0
214            for i in $PACKAGES ; do
215                line=`grep "^ *$i" ./p2.tmp`
216                RETVAL=$?
217                if test "x$RETVAL" = x0 ; then
218                    matched=1
219                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                    echo "    replacing \"$i\" with:$replace"
221                    new_packages="$new_packages $replace"
222                else
223                    new_packages="$new_packages $i"
224                fi
225            done
226            PACKAGES=$new_packages
227            rm -f ./p[1,2].tmp
228            return $matched
229        else
230            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231      fi      fi
232      rm -f test link  }
233    
234      p_CPP=`which cpp`  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235        #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236    check_for_broken_Ff()  {
237        #  Do we have defaults for $FS and/or $FS90 ?
238        tfs=f
239        tfs9=f90
240        if test "x$FS" != x ; then
241            tfs="$FS"
242        fi
243        if test "x$FS90" != x ; then
244            tfs9="$FS90"
245        fi
246    
247        #  First check the ability to create a *.F/.f pair.
248        cat <<EOF >> genmake_hello.F
249          program hello
250          write(*,*) 'hi'
251          stop
252          end
253    EOF
254        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
255      RETVAL=$?      RETVAL=$?
256      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
257          p_LN="ln -s"          if test "x$FS" = x ; then
258                FS='for'
259                FS90='fr9'
260                check_for_broken_Ff
261            else
262                cat <<EOF 2>&1
263    ERROR: Your file system cannot distinguish between *.F and *.f files
264      (fails the "cp" test) and this program cannot find a suitable
265      replacement extension.  Please try a different build environment or
266      contact the <MITgcm-support@mitgcm.org> list for help.
267    
268    EOF
269                exit -1
270            fi
271            return
272      fi      fi
273      rm -f test link      rm -f genmake_hello.*
274    
275      # look for possible fortran compilers      #  Check the ability of ${MAKE} and ${LN} to use the current set
276      p_FC=      #  of extensions.
277      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      cat <<EOF >> genmake_hello.F
278          which $c > /dev/null 2>&1        program hello
279          write(*,*) 'hi'
280          stop
281          end
282    EOF
283        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284        cat <<EOF >> $MAKEFILE
285    .SUFFIXES:
286    .SUFFIXES: .$tfs .F
287    .F.$tfs:
288            $LN \$< \$@
289    EOF
290        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291        RETVAL=$?
292        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293            if test "x$FS" = x ; then
294                FS='for'
295                FS90='fr9'
296                check_for_broken_Ff
297            else
298                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299                echo "       see simple makefile: '$MAKEFILE' (left here)"
300                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
304                exit -1
305                return
306            fi
307        fi
308        rm -f genmake_hello.* $MAKEFILE
309        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311        #  If we make it here, use the extensions
312        FS=$tfs
313        FS90=$tfs9
314        return
315    }
316    
317    look_for_makedepend()  {
318    
319        #  The "original" makedepend is part of the Imake system that is
320        #  most often distributed with XFree86 or with an XFree86 source
321        #  package.  As a result, many machines (eg. generic Linux) do not
322        #  have a system-default "makedepend" available.  For those
323        #  systems, we have two fall-back options:
324        #
325        #    1) a makedepend implementation shipped with the cyrus-imapd
326        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327        #
328        #    2) a known-buggy xmakedpend shell script
329        #
330        #  So the choices are, in order:
331        #
332        #    1) use the user-specified program
333        #    2) use a system-wide default
334        #    3) locally build and use the cyrus implementation
335        #    4) fall back to the buggy local xmakedpend script
336        #
337        echo >> $LOGFILE
338        echo "running: look_for_makedepend()" >> $LOGFILE
339        if test "x${MAKEDEPEND}" != x ; then
340            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
341            RETVAL=$?
342            if test x"$RETVAL" = x0 ; then
343                build_cyrus_makedepend
344                RETVAL=$?
345                if test "x$RETVAL" != x0 ; then
346                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
347                    MAKEDEPEND=
348                fi
349            else
350                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
351                RETVAL=$?
352                if test "x$RETVAL" = x0 ; then
353                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
354                fi
355                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
356            fi
357        fi
358        if test "x${MAKEDEPEND}" = x ; then
359            which makedepend > /dev/null 2>&1
360            RV0=$?
361            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
362            #  echo 'MAKEFILE="'$MAKEFILE'"'
363            cat <<EOF >> $MAKEFILE
364    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
365    #
366    #   Some "makedepend" implementations will die if they cannot
367    #   find a Makefile -- so this file is here to gives them an
368    #   empty one to find and parse.
369    EOF
370            cat <<EOF >> genmake_tc.f
371          program test
372          write(*,*) 'test'
373          stop
374          end
375    EOF
376            makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
377            RV1=$?
378            test -f $MAKEFILE  &&  rm -f $MAKEFILE
379            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
380            if test "x${RV0}${RV1}" = x00 ; then
381                MAKEDEPEND=makedepend
382                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
383            else
384                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
385                #  Try to build the cyrus implementation
386                build_cyrus_makedepend
387                RETVAL=$?
388                if test "x$RETVAL" != x0 ; then
389                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
390                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392                fi
393            fi
394        fi
395    }
396    
397    build_cyrus_makedepend()  {
398        echo >> $LOGFILE
399        echo "running: build_cyrus_makedepend()" >> $LOGFILE
400        rm -f ./genmake_cy_md
401        (
402            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
403                &&  ./configure > /dev/null 2>&1  \
404                &&  $MAKE > /dev/null 2>&1
405            if test -x ./makedepend.exe ; then
406                $LN ./makedepend.exe ./makedepend
407            fi
408            ./makedepend ifparser.c > /dev/null 2>&1  \
409                &&  echo "true"
410        ) > ./genmake_cy_md
411        grep true ./genmake_cy_md > /dev/null 2>&1
412        RETVAL=$?
413        rm -f ./genmake_cy_md
414        if test "x$RETVAL" = x0 ; then
415            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
416            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
417            return 0
418        else
419            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
420            return 1
421        fi
422    }
423    
424    build_embed_encode()
425    {
426        printf "  building the embed-encode utility...  "
427        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
428            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
429                echo
430                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
431                echo
432                EMBED_SRC=f
433                return 1
434            fi
435            clist="cc gcc c89 $CC"
436            for ic in $clist ; do
437                comm="$ic -o encode_files encode_files.c"
438                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
439                RETVAL=$?
440                if test "x$RETVAL" = x0 ; then
441                    echo "OK"
442                    return 0
443                fi
444            done
445            echo
446            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
447            echo "      so it has been disabled"
448            echo
449            EMBED_SRC=f
450            return 1
451        fi
452        echo "OK"
453    }
454    
455    #  look for possible C compilers
456    look_for_C_compilers() {
457        echo >> $LOGFILE
458        echo "running: look_for_C_compilers()" >> $LOGFILE
459        rm -f ./genmake_hello.c  ./genmake_hello
460        cat >> genmake_hello.c << EOF
461    #include <stdio.h>
462    int main(int argc, char **argv) {
463      printf("Hello!\n");
464      return 0;
465    }
466    EOF
467        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
468        p_CC=
469        for c in $tmp ; do
470            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
471            echo $COMM >> $LOGFILE
472            $COMM >> $LOGFILE 2>&1
473          RETVAL=$?          RETVAL=$?
474          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
475              p_FC="$p_FC $c"              echo " $c test successful" >> $LOGFILE
476                p_CC="$p_CC $c"
477          fi          fi
478      done      done
479      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./genmake_hello.c ./genmake_hello
480      if test "x${p_FC}" = x ; then      if test "x${p_CC}" = x ; then
481          echo "  None found!!!"          cat 1>&2 <<EOF
482    
483    Error: No C compilers were found in your path.  Please specify one using:
484    
485        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
486        2) the CC or MITGCM_CC environment variables.
487    
488    EOF
489            exit 1
490      else      else
491          echo "  "$p_FC          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
492            if test "x$CC" = x ; then
493                CC=`echo $p_CC | $AWK '{print $1}'`
494                echo "  Setting C compiler to: "$CC
495            fi
496      fi      fi
497        echo " --> set CC='$CC'" >> $LOGFILE
498    }
499    
500      # look for possible MPI libraries  # Guess possible config options for this host
501      mpi_libs=  find_possible_optfile()  {
502      mpi_fort=`which mpif77 2>/dev/null`  
503      RETVAL=$?      echo >> $LOGFILE
504      if test "x${RETVAL}" = x0 ; then      echo "running: find_possible_optfile()" >> $LOGFILE
505          cat >>test.f <<EOF      tmp1=`uname`"_"`uname -m`
506        PROGRAM HELLO      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
507        DO 10, I=1,10      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
508        PRINT *,'Hello World'      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
509     10 CONTINUE      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
510        STOP      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
511        END      PLATFORM=$tmp3
512        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
513        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
514        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
515    
516        #================================================================
517        #  look for possible FORTRAN compilers
518        echo "  look for possible FORTRAN compilers" >> $LOGFILE
519        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
520        p_FC=
521        rm -f ./genmake_hello.f
522        cat >> genmake_hello.f <<EOF
523          program hello
524          do i=1,3
525            print *, 'hello world : ', i
526          enddo
527          end
528  EOF  EOF
529          eval "$mpi_fort -showme test.f > out"      for f in $tmp ; do
530            COMM="$f -o genmake_hello genmake_hello.f"
531            echo $COMM >> $LOGFILE
532            $COMM >> $LOGFILE 2>&1
533          RETVAL=$?          RETVAL=$?
534          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
535              a=`cat out`              echo " $f test successful" >> $LOGFILE
536              for i in $a ; do              p_FC="$p_FC $f"
                 case $i in  
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
537          fi          fi
538          rm -f test.f out      done
539        rm -f ./genmake_hello.f ./genmake_hello
540        if test "x${p_FC}" = x ; then
541            cat 1>&2 <<EOF
542    
543    Error: No Fortran compilers were found in your path.  Please specify one using:
544    
545        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
546        2) a command-line option (eg. "-fc NAME"), or
547        3) the FC or MITGCM_FC environment variables.
548    
549    EOF
550            exit 1
551        else
552            echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
553      fi      fi
554    
555  }      #  Use the first of the compilers found in the current PATH
556        #  that has a correctly-named optfile
557        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
558            for i in $p_FC ; do
559                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
560                if test -r $OPTFILE ; then
561                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
562                    break
563                fi
564            done
565        fi
566    
567  parse_options()  {      if test "x$OPTFILE" = x ; then
568            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
569      ac_prev=          if test ! -r $OPTFILE ; then
570      for ac_option in "${OPTIONS[@]}" ; do               echo "  I looked for the file "$OPTFILE" but did not find it"
571            fi
572          # echo "ac_option = :$ac_option:"      fi
573            
574          # If the previous option needs an argument, assign it.      if test "x$OPTFILE" = x ; then
575          if test -n "$ac_prev"; then          cat 1>&2 <<EOF
576              eval "$ac_prev=\$ac_option"  
577              ac_prev=  Error: No options file was found in:  $ROOTDIR/tools/build_options/
578              continue    that matches this platform ("$PLATFORM") and the compilers found in
579          fi    your path.  Please specify an "optfile" using:
580            
581          ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
582                2) the MITGCM_OF environment variable.
583          case $ac_option in  
584                  If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
585              -help | --help | -h | --h)  
586                  usage ;;  EOF
587                        exit 1
588              -nooptfile | --nooptfile)      fi
                 OPTFILE="NONE" ;;  
             -optfile | --optfile | -of | --of)  
                 ac_prev=optfile ;;  
             -optfile=* | --optfile=* | -of=* | --of=*)  
                 OPTFILE=$ac_optarg ;;  
               
             -pdepend | --pdepend)  
                 ac_prev=pdepend ;;  
             -pdepend=* | --pdepend=*)  
                 PDEPEND=$ac_optarg ;;  
               
             -pdefault | --pdefault)  
                 ac_prev=pdefault ;;  
             -pdefault=* | --pdefault=*)  
                 PDEFAULT=$ac_optarg ;;  
               
             -makefile | -ma)  
                 ac_prev=makefile ;;  
             --makefile=* | -ma=*)  
                 MAKEFILE=$ac_optarg ;;  
               
             -platform | --platform | -pl | --pl)  
                 ac_prev=platform ;;  
             -platform=* | --platform=* | -pl=* | --pl=*)  
                 PLATFORM=$ac_optarg ;;  
   
             -rootdir | --rootdir | -rd | --rd)  
                 ac_prev=rootdir ;;  
             -rootdir=* | --rootdir=* | -rd=* | --rd=*)  
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
589  }  }
590    
591  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 594  get_pdepend_list()  {
594      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
595      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
596      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
597          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
598          > ./.pd_tmp          > ./.pd_tmp
599      source ./.pd_tmp      RETVAL=$?
600        if test ! "x${RETVAL}" = x0 ; then
601          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
602          exit 1
603        fi
604        . ./.pd_tmp
605      rm -f ./.pd_tmp      rm -f ./.pd_tmp
606    }
607    
608    #  Build a CPP macro to automate calling C routines from FORTRAN
609    get_fortran_c_namemangling()  {
610    
611      echo -n "PNAME = "${}      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
612        if test ! "x$FC_NAMEMANGLE" = x ; then
613            return 0
614        fi
615        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
616    
617        default_nm="#define FC_NAMEMANGLE(X) X ## _"
618    
619        cat > genmake_test.c <<EOF
620    void tcall( char * string ) { tsub( string ); }
621    EOF
622        COMM="$CC $CFLAGS -c genmake_test.c"
623        echo ' '$COMM >> $LOGFILE
624        $COMM >> $LOGFILE 2>&1
625        RETVAL=$?
626        if test "x$RETVAL" != x0 ; then
627            FC_NAMEMANGLE=$default_nm
628            cat <<EOF>> $LOGFILE
629    
630     WARNING: C test compile fails
631     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
632     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
633    EOF
634            return 1
635        fi
636        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
637        RETVAL=$?
638        if test "x$RETVAL" != x0 ; then
639            FC_NAMEMANGLE=$default_nm
640            cat <<EOF>> $LOGFILE
641    
642     WARNING: The "nm" command failed.
643     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
644     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
645    EOF
646            return 1
647        fi
648        cat > genmake_tcomp.$FS <<EOF
649          subroutine tcall( string )
650          character*(*) string
651          call tsub( string )
652          end
653    EOF
654        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
655        echo ' '$COMM >> $LOGFILE
656        $COMM >> $LOGFILE 2>&1
657        RETVAL=$?
658        if test "x$RETVAL" != x0 ; then
659            FC_NAMEMANGLE=$default_nm
660            cat <<EOF>> $LOGFILE
661    
662     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
663     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
664     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
665    EOF
666            return 1
667        fi
668        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
669        RETVAL=$?
670        if test "x$RETVAL" != x0 ; then
671            FC_NAMEMANGLE=$default_nm
672            cat <<EOF>> $LOGFILE
673    
674     WARNING: The "nm" command failed.
675     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
676     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
677    EOF
678            return 1
679        fi
680    
681        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
682        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
683        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
684        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
685    
686        nmangle="X"
687        if test "x$c_a" != "x$f_a" ; then
688            comm="echo x$f_a | sed -e 's|x$c_a||'"
689            a=`eval $comm`
690            nmangle="$a ## $nmangle"
691        fi
692        if test "x$c_b" != "x$f_b" ; then
693            comm="echo x$f_b | sed -e 's|x$c_b||'"
694            b=`eval $comm`
695            nmangle="$nmangle ## $b"
696        fi
697    
698        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
699    
700        #  cleanup the testing files
701        rm -f genmake_tcomp.* genmake_test.*
702    
703        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
704  }  }
705    
706    check_HAVE_CLOC()  {
707        echo >> $LOGFILE
708        echo "running: check_HAVE_CLOC()" >> $LOGFILE
709        get_fortran_c_namemangling
710        cat <<EOF > genmake_tc_1.c
711    $FC_NAMEMANGLE
712    #include <stdio.h>
713    #include <stdlib.h>
714    #include <unistd.h>
715    #include <assert.h>
716    #include <sys/time.h>
717    void FC_NAMEMANGLE(cloc) ( double *curtim )
718    {
719     struct timeval tv1;
720     gettimeofday(&tv1 , (void *)NULL );
721     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
722     *curtim = *curtim/1.E6;
723    }
724    EOF
725        COMM="$CC $CFLAGS -c genmake_tc_1.c"
726        echo $COMM >> $LOGFILE
727        $COMM >> $LOGFILE 2>&1
728        RET_C=$?
729        cat <<EOF > genmake_tc_2.$FS
730          program hello
731          REAL*8 wtime
732          external cloc
733          call cloc(wtime)
734          print *," HELLO WORLD", wtime
735          end
736    EOF
737        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
738        echo $COMM >> $LOGFILE
739        $COMM >> $LOGFILE 2>&1
740        RET_F=$?
741        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
742        RETVAL=$?
743        if test "x$RETVAL" = x0 ; then
744            HAVE_CLOC=t
745        fi
746        rm -f genmake_tc*
747        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
748    }
749    
750  #  Explain usage  check_HAVE_SIGREG()  {
751  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
752      echo          return
753      echo "Usage: "$0" [OPTIONS]"      fi
754      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
755      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
756      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
757      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
758      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
759      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
760      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
761      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
762      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
763      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
764      echo "    -makefile NAME | -ma NAME"  
765      echo "      --makefile=NAME | -ma=NAME"  int * ip;
766      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  
767      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  static void killhandler(
768      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
769      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  {
770      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      *ip = *ip + 1;
771      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"      return;
     echo "    -disable NAME | --disable NAME"  
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"  
     echo  
     echo "  and NAME is a string such as:"  
     echo  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
     echo  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
772  }  }
773    
774  # Dump all important state  void FC_NAMEMANGLE(sigreg) (int * aip)
775  dump_state()  {  {
776      fname=$1      struct sigaction s;
777      echo " " > $fname      ip = aip;
778        s.sa_flags = SA_SIGINFO;
779        s.sa_sigaction = (void *)killhandler;
780        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
781            printf("Sigaction returned error = %d\n", errno);
782            exit(0);
783        }
784        return;
785    }
786    EOF
787        COMM="$CC $CFLAGS -c genmake_tc_1.c"
788        echo $COMM >> $LOGFILE
789        $COMM >> $LOGFILE 2>&1
790        RET_C=$?
791        cat <<EOF > genmake_tc_2.$FS
792          program hello
793          integer anint
794          common /iv/ anint
795          external sigreg
796          call sigreg(anint)
797          end
798    EOF
799        cat genmake_tc_2.$FS >> $LOGFILE
800        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
801        echo $COMM >> $LOGFILE
802        $COMM >> $LOGFILE 2>&1
803      RETVAL=$?      RETVAL=$?
804      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" = x0 ; then
805          echo "Error: cannot write to $fname"          HAVE_SIGREG=t
806          exit 1      fi
807        rm -f genmake_tc*
808        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
809    }
810    
811    check_HAVE_SETRLSTK()  {
812        if test ! "x$HAVE_SETRLSTK" = x ; then
813            return
814        fi
815        echo >> $LOGFILE
816        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
817        get_fortran_c_namemangling
818        cat <<EOF > genmake_tc_1.c
819    $FC_NAMEMANGLE
820    #include <sys/time.h>
821    #include <sys/resource.h>
822    #include <unistd.h>
823    void FC_NAMEMANGLE(setrlstk) ()
824    {
825        struct rlimit rls;
826        rls.rlim_cur = RLIM_INFINITY;
827        rls.rlim_max = RLIM_INFINITY;
828        setrlimit(RLIMIT_STACK, &rls);
829        return;
830    }
831    EOF
832        COMM="$CC $CFLAGS -c genmake_tc_1.c"
833        echo $COMM >> $LOGFILE
834        $COMM >> $LOGFILE 2>&1
835        RET_C=$?
836        cat <<EOF > genmake_tc_2.$FS
837          program hello
838          external setrlstk
839          call setrlstk()
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846        RETVAL=$?
847        if test "x$RETVAL" = x0 ; then
848            HAVE_SETRLSTK=t
849        fi
850        rm -f genmake_tc*
851        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
852    }
853    
854    check_HAVE_STAT()  {
855        echo >> $LOGFILE
856        echo "running: check_HAVE_STAT()" >> $LOGFILE
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <stdio.h>
861    #include <stdlib.h>
862    #include <unistd.h>
863    #include <sys/stat.h>
864    #include <sys/types.h>
865    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
866    {
867        char name[512];
868        struct stat astat;
869    
870        name[0] = 'a'; name[1] = '\0';
871        if (! stat(name, &astat))
872            *nbyte = (int)(astat.st_size);
873        else
874            *nbyte = -1;
875    }
876    EOF
877        COMM="$CC $CFLAGS -c genmake_tc_1.c"
878        echo $COMM >> $LOGFILE
879        $COMM >> genmake_tc.log 2>&1
880        RET_C=$?
881        cat <<EOF > genmake_tc_2.$FS
882          program hello
883          integer nbyte
884          call tfsize(nbyte)
885          print *," HELLO WORLD", nbyte
886          end
887    EOF
888        cat genmake_tc_2.$FS >> $LOGFILE
889        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890        echo $COMM >> $LOGFILE
891        $COMM >> genmake_tc.log 2>&1
892        RETVAL=$?
893        if test "x$RETVAL" = x0 ; then
894            HAVE_STAT=t
895        fi
896        rm -f genmake_tc*
897        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
898    }
899    
900    check_netcdf_libs()  {
901        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_netcdf_libs()" >> $LOGFILE
906        cat <<EOF > genmake_tnc.F
907          program fgennc
908    #include "netcdf.inc"
909    EOF
910       #if test ! "x$MPI" = x ; then
911       #    echo '#include "mpif.h"' >> genmake_tnc.F
912       #fi
913        cat <<EOF >> genmake_tnc.F
914          integer iret, ncid, xid
915          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
916          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
917          iret = nf_def_dim(ncid, 'X', 11, xid)
918          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
919          iret = nf_close(ncid)
920          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
921          end
922    EOF
923        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
924        cat genmake_tnc.F >> genmake_tnc.log
925        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
926        RET_CPP=f
927        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
928        echo "$COMM" >> genmake_tnc.log
929        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
930        if test "x$RET_CPP" = xf ; then
931            echo "  WARNING: CPP failed to pre-process the netcdf test." \
932                >> genmake_tnc.log
933            echo "    Please check that \$INCLUDES is properly set." \
934                >> genmake_tnc.log
935        fi
936        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
937        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
938        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
939            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
940        RET_COMPILE=$?
941        cat genmake_tnc.log >> $LOGFILE
942    
943        #EH3  Remove test program execution for machines that either disallow
944        #EH3  execution or cannot support it (eg. cross-compilers)
945        #EH3
946        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
947        #EH3 RETVAL=$?
948        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
949    
950        if test "x$RET_COMPILE" = x0 ; then
951            HAVE_NETCDF=t
952            echo "check_netcdf: successful" >> $LOGFILE
953        else
954            # try again with "-lnetcdf" added to the libs
955            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
956            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
957            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
958            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
959            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
960                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
961                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
962            RET_COMPILE=$?
963            echo >> $LOGFILE
964            cat genmake_tnc.log >> $LOGFILE
965            if test "x$RET_COMPILE" = x0 ; then
966                LIBS="$LIBS -lnetcdf"
967                HAVE_NETCDF=t
968                echo "check_netcdf: successful" >> $LOGFILE
969            else
970            # try again with "-lnetcdff" added to the libs
971                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
972                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
973                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
974                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
975                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
976                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
977                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
978                RET_COMPILE=$?
979                echo >> $LOGFILE
980                cat genmake_tnc.log >> $LOGFILE
981                if test "x$RET_COMPILE" = x0 ; then
982                    LIBS="$LIBS -lnetcdff -lnetcdf"
983                    HAVE_NETCDF=t
984                    echo "check_netcdf: successful" >> $LOGFILE
985                fi
986            fi
987        fi
988        rm -f genmake_tnc*
989        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
990    }
991    
992    check_lapack_libs()  {
993        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
994            return
995        fi
996        echo >> $LOGFILE
997        echo "running: check_lapack_libs()" >> $LOGFILE
998        cat <<EOF > genmake_tla.F
999          program fgenla
1000          integer info
1001          integer ipiv( 2 )
1002          double precision ab( 4, 2 ), b( 2 )
1003          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1004          data b / 1., 1. /
1005          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1006          IF (info .NE. 0) write(*,*) 'Error:', info
1007          write(*,*) b
1008          end
1009    EOF
1010        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1011        cat genmake_tla.F >> genmake_tla.log
1012        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1013        RET_CPP=f
1014        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1015        echo "$COMM" >> genmake_tla.log
1016        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1017        if test "x$RET_CPP" = xf ; then
1018            echo "  WARNING: CPP failed to pre-process the lapack test." \
1019                >> genmake_tla.log
1020            echo "    Please check that \$INCLUDES is properly set." \
1021                >> genmake_tla.log
1022        fi
1023        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1024        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1025        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1026            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1027        RET_COMPILE=$?
1028        cat genmake_tla.log >> $LOGFILE
1029    
1030        # test program execution not always possible (see check_netcdf_libs)
1031        #
1032        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1033        #RETVAL=$?
1034        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1035    
1036        if test "x$RET_COMPILE" = x0 ; then
1037            HAVE_LAPACK=t
1038            echo "check_lapack: successful" >> $LOGFILE
1039        else
1040            # try again with "-llapack" added to the libs
1041            echo "==> try again with added '-llapack'" > genmake_tla.log
1042            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1043            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1044            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1045            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1046                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1047                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1048            RET_COMPILE=$?
1049            echo >> $LOGFILE
1050            cat genmake_tla.log >> $LOGFILE
1051            if test "x$RET_COMPILE" = x0 ; then
1052                LIBS="$LIBS -llapack"
1053                HAVE_LAPACK=t
1054                echo "check_lapack: successful" >> $LOGFILE
1055            else
1056            # try again with "-lf77blas -lcblas" added to the libs
1057                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1058                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1059                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1060                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1061                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1062                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1063                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1064                RET_COMPILE=$?
1065                echo >> $LOGFILE
1066                cat genmake_tla.log >> $LOGFILE
1067                if test "x$RET_COMPILE" = x0 ; then
1068                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1069                    HAVE_LAPACK=t
1070                    echo "check_lapack: successful" >> $LOGFILE
1071                else
1072                # try again with "-latlas" added to the libs
1073                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1074                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1075                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1076                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1077                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1078                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1079                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1080                    RET_COMPILE=$?
1081                    echo >> $LOGFILE
1082                    cat genmake_tla.log >> $LOGFILE
1083                    if test "x$RET_COMPILE" = x0 ; then
1084                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1085                        HAVE_LAPACK=t
1086                        echo "check_lapack: successful" >> $LOGFILE
1087                    fi
1088                fi
1089            fi
1090      fi      fi
1091      echo "makefile "$makefile > $fname      rm -f genmake_tla*
1092        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1093  }  }
1094    
1095    check_HAVE_FLUSH()  {
1096        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1097            return
1098        fi
1099        echo >> $LOGFILE
1100        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1101        cat <<EOF > genmake_tflsh.$FS
1102          program fgenflsh
1103          integer iounit
1104          character*9 fname
1105          iounit = 26
1106          fname = 'tmp.tflsh'
1107          open(iounit,FILE=fname,STATUS='unknown')
1108          write(iounit,*) 'genmake_tflsh: hello'
1109          call flush(iounit)
1110          close(iounit)
1111          end
1112    EOF
1113        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1114        cat genmake_tflsh.$FS >> genmake_tflsh.log
1115        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1116    
1117        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1118        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1119        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1120            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1121        RET_COMPILE=$?
1122    
1123        if test "x$RET_COMPILE" = x0 ; then
1124            HAVE_FLUSH=t
1125            #cat genmake_tflsh.log >> $LOGFILE
1126            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1127        else
1128            HAVE_FLUSH=f
1129            cat genmake_tflsh.log >> $LOGFILE
1130        fi
1131        rm -f genmake_tflsh*
1132        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1133    }
1134    
1135  #eh3 # This is the generic configuration.  ###############################################################################
1136  #eh3 set LN         = ( 'ln -s' )  #   Sequential part of script starts here
1137  #eh3 set CPP        = ( '/lib/cpp -P' )  ###############################################################################
 #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  
 #eh3 set KPP        = (  )  
 #eh3 set FC         = ( 'f77' )  
 #eh3 set LINK       = $FC  
 #eh3 set MAKEDEPEND = ( 'makedepend' )  
 #eh3 set INCLUDES   = ( -I. )  
 #eh3 set FFLAGS     = (  )  
 #eh3 set FOPTIM     = (  )  
 #eh3 set CFLAGS     = (  )  
 #eh3 set KFLAGS1    = (  )  
 #eh3 set KFLAGS2    = (  )  
 #eh3 set LIBS       = (  )  
 #eh3 set KPPFILES   = (  )  
 #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  
 #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )  
1138    
1139  #  Set defaults here  #  Set defaults here
1140    COMMANDL="$0 $@"
1141    
1142  PLATFORM=  PLATFORM=
1143  LN=  LN=
1144  S64=  S64=
1145  KPP=  KPP=
1146  FC=  #FC=
1147    #CC=gcc
1148    #CPP=
1149  LINK=  LINK=
1150    DEFINES=
1151  PACKAGES=  PACKAGES=
1152  ENABLE=  ENABLE=
1153  DISABLE=  DISABLE=
1154  MAKEFILE=  # MAKEFILE=
1155  MAKEDEPEND=  # MAKEDEPEND=
1156  PDEPEND=  PKG_DEPEND=
1157  PDEFAULT=  PKG_GROUPS=
1158    DUMPSTATE=f
1159  OPTFILE=  OPTFILE=
1160  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1161  FFLAGS=  FFLAGS=
1162  FOPTIM=  FOPTIM=
1163    FEXTRAFLAGS=
1164    USE_EXTENDED_SRC=
1165    EXTENDED_SRC_FLAG=
1166    GET_FC_VERSION=
1167  CFLAGS=  CFLAGS=
1168  KFLAGS1=  KFLAGS1=
1169  KFLAGS2=  KFLAGS2=
1170    #LDADD=
1171  LIBS=  LIBS=
1172  KPPFILES=  KPPFILES=
1173  NOOPTFILES=  NOOPTFILES=
1174  NOOPTFLAGS=  NOOPTFLAGS=
1175    MPI=
1176    MPIPATH=
1177    OMP=
1178    OMPFLAG=
1179    USE_R4=
1180    TS=
1181    PAPIS=
1182    PCLS=
1183    FOOLAD=
1184    PAPI=
1185    PCL=
1186    HPMT=
1187    GSL=
1188    DEVEL=
1189    HAVE_TEST_L=
1190    
1191    # comment this line out to enable lapack test
1192    SKIP_LAPACK_CHECK=t
1193    
1194    # DEFINES checked by test compilation or command-line
1195    HAVE_SYSTEM=
1196    HAVE_FDATE=
1197    FC_NAMEMANGLE=
1198    HAVE_CLOC=
1199    # HAVE_SETRLSTK=
1200    HAVE_STAT=
1201    HAVE_NETCDF=
1202    HAVE_ETIME=
1203    IGNORE_TIME=
1204    HAVE_LAPACK=
1205    HAVE_FLUSH=
1206    
1207  MODS=  MODS=
1208  TOOLSDIR=  TOOLSDIR=
1209  SOURCEDIRS=  SOURCEDIRS=
1210  INCLUDEDIRS=  INCLUDEDIRS=
1211    STANDARDDIRS="USE_THE_DEFAULT"
1212    
1213    #- local config file
1214    gm_local="genmake_local"
1215    
1216    G2ARGS=
1217    BASH=
1218  PWD=`pwd`  PWD=`pwd`
1219  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1220  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1221    EMBED_SRC=
1222    THISHOST=`hostname`
1223  THISCWD=`pwd`  THISCWD=`pwd`
1224  THISDATE=`date`  THISDATE=`date`
1225    THISUSER=`echo $USER`
1226    THISVER=
1227  MACHINE=`uname -a`  MACHINE=`uname -a`
1228    EXECUTABLE=
1229    EXEHOOK=
1230    EXEDIR=
1231    IEEE=
1232    if test "x$MITGCM_IEEE" != x ; then
1233        IEEE=$MITGCM_IEEE
1234    fi
1235    FS=
1236    FS90=
1237    
1238    AUTODIFF_PKG_USED=f
1239    AD_OPTFILE=
1240    TAF=
1241    AD_TAF_FLAGS=
1242    FTL_TAF_FLAGS=
1243    SVD_TAF_FLAGS=
1244    TAF_EXTRA=
1245    TAMC=
1246    AD_TAMC_FLAGS=
1247    FTL_TAF_FLAGS=
1248    SVD_TAMC_FLAGS=
1249    TAMC_EXTRA=
1250    
1251    #  The following state can be set directly by command-line switches
1252    gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1253    gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1254    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1255    
1256    #  The following state is not directly set by command-line switches
1257    gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1258    gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1259    gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1260    gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1261    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1262    
1263    #  The following are all related to adjoint/tangent-linear stuff
1264    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1265    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1266    gm_s12="TAF_EXTRA TAMC_EXTRA"
1267    
1268    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1269    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1270    
1271    cat <<EOF
1272    
1273    GENMAKE :
1274    
1275    A program for GENerating MAKEfiles for the MITgcm project.
1276       For a quick list of options, use "genmake2 -h"
1277    or for more detail see the Developer's HOWTO manual at:
1278       http://mitgcm.org/public/docs.html
1279    
1280    EOF
1281    
1282    LOGFILE="genmake.log"
1283    #- clean-up previous genmake logfiles:
1284    rm -f genmake_state genmake_*optfile $LOGFILE
1285    
 echo  
1286  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="./gm_local"  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1287    
1288  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1289  #parse_options  #parse_options
   
1290  ac_prev=  ac_prev=
1291  for ac_option ; do  for ac_option in "$@" ; do
1292    
1293        G2ARGS="$G2ARGS \"$ac_option\""
1294    
1295      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1296      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 359  for ac_option ; do Line 1298  for ac_option ; do
1298          ac_prev=          ac_prev=
1299          continue          continue
1300      fi      fi
1301        
1302      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1303        
1304      case $ac_option in      case $ac_option in
1305            
1306          -help | --help | -h | --h)          -help | --help | -h | --h)
1307              usage ;;              usage ;;
1308            
1309          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1310              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1311          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1312              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1313          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1314              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1315            
1316            -adoptfile | --adoptfile | -adof | --adof)
1317                ac_prev=AD_OPTFILE ;;
1318            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1319                AD_OPTFILE=$ac_optarg ;;
1320    
1321          -pdepend | --pdepend)          -pdepend | --pdepend)
1322              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1323          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1324              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1325            
1326          -pdefault | --pdefault)          -pgroups | --pgroups)
1327              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1328          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1329              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1330            
1331          -makefile | -ma)          -make | --make | -m | --m)
1332                ac_prev=MAKE ;;
1333            -make=* | --make=* | -m=* | --m=*)
1334                MAKE=$ac_optarg ;;
1335    
1336            -bash | --bash)
1337                ac_prev=BASH ;;
1338            -bash=* | --bash=*)
1339                BASH=$ac_optarg ;;
1340    
1341            -makedepend | --makedepend | -md | --md)
1342                ac_prev=MAKEDEPEND ;;
1343            -makedepend=* | --makedepend=* | -md=* | --md=*)
1344                MAKEDEPEND=$ac_optarg ;;
1345    
1346            -makefile | --makefile | -mf | --mf)
1347              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1348          --makefile=* | -ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1349              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1350            
1351          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1352              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1353          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1354              PLATFORM=$ac_optarg ;;              echo
1355                        usage
1356                ;;
1357    
1358          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1359              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1360          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1361              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1362            
1363          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1364              ac_prev=MODS ;;              ac_prev=MODS ;;
1365          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1366              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1367            
1368          -disable | --disable)          -disable | --disable)
1369              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1370          -disable=* | --disable=*)          -disable=* | --disable=*)
1371              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1372            
1373          -enable | --enable)          -enable | --enable)
1374              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1375          -enable=* | --enable=*)          -enable=* | --enable=*)
1376              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1377            
1378          -noopt | --noopt)          -standarddirs | --standarddirs)
1379              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
1380          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1381              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1382            
1383  #           -cpp | --cpp)  #           -cpp | --cpp)
1384  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1385  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1386  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1387                
1388            -cc | --cc)
1389                ac_prev=CC ;;
1390            -cc=* | --cc=*)
1391                CC=$ac_optarg ;;
1392    
1393          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1394              ac_prev=FC ;;              ac_prev=FC ;;
1395          -fc=* | --fc=*)          -fc=* | --fc=*)
1396              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1397            
1398            -fs | --fs)
1399                ac_prev=FS ;;
1400            -fs=* | --fs=*)
1401                FS=$ac_optarg ;;
1402    
1403            -fs90 | --fs90)
1404                ac_prev=FS90 ;;
1405            -fs90=* | --fs90=*)
1406                FS90=$ac_optarg ;;
1407    
1408            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1409                USE_R4=true ;;
1410    
1411          -ieee | --ieee)          -ieee | --ieee)
1412              IEEE=1 ;;              IEEE=true ;;
1413          -noieee | --noieee)          -noieee | --noieee)
1414              IEEE=0 ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1415                    -devel | --devel)
1416                IEEE=true ; DEVEL=true ;;
1417            -gsl | --gsl)
1418                GSL=true ;;
1419    
1420            -ts | --ts)
1421                TS=true ;;
1422            -papis | --papis)
1423                PAPIS=true ;;
1424            -pcls | --pcls)
1425                PCLS=true ;;
1426            -foolad | --foolad)
1427                FOOLAD=true ;;
1428            -papi | --papi)
1429                PAPI=true ;;
1430            -pcl | --pcl)
1431                PCL=true ;;
1432            -hpmt | --hpmt)
1433                HPMT=true ;;
1434    
1435          -mpi | --mpi)          -mpi | --mpi)
1436              MPI=1 ;;              MPI=true ;;
1437          -nompi | --nompi)          -mpi=* | --mpi=*)
1438              MPI=0 ;;              MPIPATH=$ac_optarg
1439                        MPI=true ;;
1440          -jam | --jam)  
1441              JAM=1 ;;          -omp | --omp)
1442          -nojam | --nojam)              OMP=true ;;
1443              JAM=0 ;;          -omp=* | --omp=*)
1444                        OMPFLAG=$ac_optarg
1445                OMP=true ;;
1446    
1447            -ds | --ds)
1448                DUMPSTATE=t ;;
1449    
1450            -extra_flag | --extra_flag)
1451                ac_prev=FEXTRAFLAGS ;;
1452            -extra_flag=* | --extra_flag=*)
1453                FEXTRAFLAGS=$ac_optarg ;;
1454    
1455            -taf_extra | --taf_extra)
1456                ac_prev=TAF_EXTRA ;;
1457            -taf_extra=* | --taf_extra=*)
1458                TAF_EXTRA=$ac_optarg ;;
1459    
1460            -tamc_extra | --tamc_extra)
1461                ac_prev=TAMC_EXTRA ;;
1462            -tamc_extra=* | --tamc_extra=*)
1463                TAMC_EXTRA=$ac_optarg ;;
1464    
1465            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1466                IGNORE_TIME="-DIGNORE_TIME" ;;
1467    
1468            -es | --es | -embed-source | --embed-source)
1469                EMBED_SRC=t ;;
1470    
1471          -*)          -*)
1472              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1473              usage              usage
1474              ;;              ;;
1475            
1476          *)          *)
1477              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1478              usage              usage
1479              ;;              ;;
1480            
1481      esac      esac
1482        
1483  done  done
1484    
1485  echo "  getting OPTFILE information:  "  printf "  getting local config information:  "
1486  if test "x${OPTFILE}" = x ; then  if test -f $gm_local ; then
1487      echo "Warning: no OPTFILE specified so we'll look for possible settings"      echo "using $gm_local"
1488      printf "\n===  Searching for possible settings for OPTFILE  ===\n"      . $gm_local
     find_possible_configs  
1489  else  else
1490      if test "x$OPTFILE" = xNONE ; then      echo "none found"
         echo "    OPTFILE=NONE so we'll try to use default settings"  
     else  
         if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  
             echo "    using OPTFILE=\"$OPTFILE\""  
             source "$OPTFILE"  
             RETVAL=$?  
             if test "x$RETVAL" != x0 ; then  
                 echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
                 echo "--please check that variable syntax is bash-compatible"  
                 exit 1  
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
             exit 1  
         fi  
     fi  
1491  fi  fi
1492    
1493  printf "\n===  Setting defaults  ===\n"  if test -f ./.genmakerc ; then
1494  echo -n "  Adding MODS directories:  "      echo
1495  for d in $MODS ; do      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1496      if test ! -d $d ; then      echo "  file.  This file format is no longer supported.  For directions on"
1497          echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1498          echo "Error: MODS directory \"$d\" not found!"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1499          exit 1      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1500      else      echo "WARNING: ignore \"./.genmakerc\" and continue."
1501          echo -n " $d"      echo
         SOURCEDIRS="$SOURCEDIRS $d"  
         INCLUDEDIRS="$INCLUDEDIRS $d"  
     fi  
 done  
 echo  
   
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
1502  fi  fi
1503    
1504    #  Find the MITgcm ${ROOTDIR}
1505  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1506      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1507        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1508          ROOTDIR=".."          ROOTDIR=".."
1509      else      else
1510          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1511              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1512                  ROOTDIR=$d                  ROOTDIR=$d
1513                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1514                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1515                  break                  break
1516              fi              fi
1517          done          done
# Line 530  if test ! -d ${ROOTDIR} ; then Line 1528  if test ! -d ${ROOTDIR} ; then
1528      exit 1      exit 1
1529  fi  fi
1530    
1531    #  Find the MITgcm ${THISVER}
1532    version_file="${ROOTDIR}/doc/tag-index"
1533    if test -f $version_file ; then
1534        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1535    #-  remove ./BUILD_INFO.h file if older than version_file
1536        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1537            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1538            rm -f ./BUILD_INFO.h
1539        fi
1540    fi
1541    
1542    if test "x$MAKEFILE" = x ; then
1543        MAKEFILE="Makefile"
1544    fi
1545    
1546    echo "  getting OPTFILE information:"
1547    if test "x${OPTFILE}" = x ; then
1548        if test "x$MITGCM_OF" = x ; then
1549            echo "Warning: no OPTFILE specified so we'll look for possible settings"
1550            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1551            find_possible_optfile
1552        else
1553            OPTFILE=$MITGCM_OF
1554        fi
1555    fi
1556    if test "x$OPTFILE" != xNONE ; then
1557        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1558            echo "    using OPTFILE=\"$OPTFILE\""
1559            . "$OPTFILE"
1560            RETVAL=$?
1561            if test "x$RETVAL" != x0 ; then
1562                printf "Error: failed to source OPTFILE \"$OPTFILE\""
1563                echo "--please check that variable syntax is bash-compatible"
1564                exit 1
1565            fi
1566            if test "x$DUMPSTATE" = xt ; then
1567                cp -f $OPTFILE "genmake_optfile"
1568            fi
1569        else
1570            echo "Error: can't read OPTFILE=\"$OPTFILE\""
1571            exit 1
1572        fi
1573    fi
1574    
1575    echo "  getting AD_OPTFILE information:"
1576    if test "x${AD_OPTFILE}" = x ; then
1577        if test "x$MITGCM_AD_OF" = x ; then
1578            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1579        else
1580            AD_OPTFILE=$MITGCM_AD_OF
1581        fi
1582    fi
1583    if test "x${AD_OPTFILE}" != xNONE ; then
1584        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1585            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1586            . "$AD_OPTFILE"
1587            RETVAL=$?
1588            if test "x$RETVAL" != x0 ; then
1589                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1590                echo "--please check that variable syntax is bash-compatible"
1591                exit 1
1592            fi
1593            if test "x$DUMPSTATE" = xt ; then
1594                cp -f $AD_OPTFILE "genmake_ad_optfile"
1595            fi
1596        else
1597            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1598            exit 1
1599        fi
1600    fi
1601    
1602    #====================================================================
1603    #  Set default values if not set by the optfile
1604    #
1605    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1606    #  either set defaults or complain and abort!
1607    if test ! "x$BASH" = x ; then
1608        # add a trailing space so that it works within the Makefile syntax (see below)
1609        BASH="$BASH "
1610    fi
1611    if test "x$FC" = x ; then
1612        cat <<EOF 1>&2
1613    
1614    Error: no Fortran compiler: please specify using one of the following:
1615      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1616      2) the "-fc=XXX" command-line option
1617      3) the "./genmake_local" file
1618    EOF
1619        exit 1
1620    fi
1621    if test "x$GET_FC_VERSION" != x ; then
1622      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1623      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1624      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1625      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1626      if test -s genmake_fc_vers1 ; then
1627        cat genmake_fc_vers1 >> $LOGFILE
1628      else
1629        cat genmake_fc_vers2 >> $LOGFILE
1630      fi
1631      echo "<-- compiler version ----" >> $LOGFILE
1632      rm -f genmake_fc_vers1 genmake_fc_vers2
1633    fi
1634    
1635    if test "x$CC" = x ; then
1636        look_for_C_compilers
1637    fi
1638    
1639    if test "x$LINK" = x ; then
1640        LINK=$FC
1641    fi
1642    if test "x$MAKE" = x ; then
1643        MAKE="make"
1644    fi
1645    if test "x$CPP" = x ; then
1646        CPP="cpp -traditional -P"
1647    fi
1648    #EH3 === UGLY ===
1649    #  The following is an ugly little hack to check for $CPP in /lib/ and
1650    #  it should eventually be replaced with a more general function that
1651    #  searches a combo of the user's path and a list of "usual suspects"
1652    #  to find the correct location for binaries such as $CPP.
1653    for i in " " "/lib/" ; do
1654        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1655    done
1656    #EH3 === UGLY ===
1657    echo "#define A a" | $CPP > test_cpp 2>&1
1658    RETVAL=$?
1659    if test "x$RETVAL" != x0 ; then
1660        cat <<EOF 1>&2
1661    
1662    Error: C pre-processor "$CPP" failed the test case: please specify using:
1663    
1664      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1665      2) the "./genmake_local" file
1666      3) with the CPP environment variable
1667    
1668    EOF
1669        exit 1
1670    else
1671        rm -f test_cpp
1672    fi
1673    
1674    look_for_makedepend
1675    
1676    #  Check that soft-link command is set and usable
1677    if test "x$LN" = x ; then
1678        LN="ln -s"
1679    fi
1680    echo "test" > genmake_test_ln
1681    $LN genmake_test_ln genmake_tlink
1682    RETVAL=$?
1683    if test "x$RETVAL" != x0 ; then
1684        cat <<EOF 1>&2
1685    
1686    Error: The command "$LN" failed -- please specify a working soft-link
1687      command in the optfile.
1688    
1689    EOF
1690        exit 1
1691    fi
1692    test -L genmake_tlink > /dev/null 2>&1
1693    RETVAL=$?
1694    if test "x$RETVAL" = x0 ; then
1695        HAVE_TEST_L=t
1696    fi
1697    rm -f genmake_test_ln genmake_tlink
1698    
1699    #  Check for broken *.F/*.f handling and fix if possible
1700    check_for_broken_Ff
1701    
1702    if test ! "x$MPI" = x ; then
1703          echo "  Turning on MPI cpp macros"
1704          DEFINES="$DEFINES -DALLOW_USE_MPI"
1705    fi
1706    if test ! "x$OMP" = x ; then
1707          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1708          FFLAGS="$FFLAGS $OMPFLAG"
1709          F90FLAGS="$F90FLAGS $OMPFLAG"
1710          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1711    fi
1712    
1713    if test ! "x$USE_R4" = x ; then
1714          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1715          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1716    fi
1717    
1718    if test ! "x$TS" = x ; then
1719          echo "  Turning on timing per timestep"
1720          if test ! "x$FOOLAD" = x ; then
1721                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1722          else
1723                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1724          fi
1725          PACKAGES="$PACKAGES showflops"
1726    fi
1727    if test ! "x$PAPIS" = x ; then
1728          echo "  Turning on PAPI flop summary per timestep"
1729          echo "  Please make sure PAPIINC, PAPILIB are defined"
1730          if test ! "x$FOOLAD" = x ; then
1731                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1732          else
1733                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1734          fi
1735          INCLUDES="$INCLUDES $PAPIINC"
1736          LIBS="$LIBS $PAPILIB"
1737          PACKAGES="$PACKAGES showflops"
1738    fi
1739    if test ! "x$PCLS" = x ; then
1740          echo "  Turning on PCL counter summary per timestep"
1741          echo "  Please make sure PCLINC, PCLLIB are defined"
1742          if test ! "x$FOOLAD" = x ; then
1743                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1744          else
1745                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1746          fi
1747          INCLUDES="$INCLUDES $PCLINC"
1748          LIBS="$LIBS $PCLLIB"
1749          PACKAGES="$PACKAGES showflops"
1750    fi
1751    if test ! "x$PAPI" = x ; then
1752          if test ! "x$PAPIS" = x ; then
1753              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1754              echo "  Sticking with PAPI flop summary per timestep!"
1755          else
1756              echo "  Turning on performance analysis with PAPI"
1757              echo "  Please make sure PAPIINC, PAPILIB are defined"
1758              DEFINES="$DEFINES -DUSE_PAPI"
1759              INCLUDES="$INCLUDES $PAPIINC"
1760              LIBS="$LIBS $PAPILIB"
1761          fi
1762    fi
1763    if test ! "x$PCL" = x ; then
1764          if test ! "x$PCLS" = x ; then
1765              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1766              echo "  Sticking with PCL flop summary per timestep!"
1767          else
1768              echo "  Turning on performance analysis with PCL"
1769              echo "  Please make sure PCLINC, PCLLIB are defined"
1770              DEFINES="$DEFINES -DUSE_PCL"
1771              INCLUDES="$INCLUDES $PCLINC"
1772              LIBS="$LIBS $PCLLIB"
1773          fi
1774    fi
1775    if test ! "x$HPMT" = x ; then
1776          if test ! "x$PAPI" = x ; then
1777              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1778              echo "  Sticking with PAPI!"
1779          else
1780            if test ! "x$PCL" = x ; then
1781              echo "  PCL and the HPM Toolkit cannot co-exist!"
1782              echo "  Sticking with PCL!"
1783            else
1784              echo "  Turning on performance analysis with the HPM Toolkit"
1785              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1786              DEFINES="$DEFINES -DUSE_LIBHPM"
1787              INCLUDES="$INCLUDES $HPMTINC"
1788              LIBS="$LIBS $HPMTLIB"
1789            fi
1790          fi
1791    fi
1792    if test ! "x$GSL" = x ; then
1793          echo "  Turning on use of GSL to control floating point calculations"
1794          echo "  Please make sure GSLINC, GSLLIB are defined"
1795          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1796          INCLUDES="$INCLUDES $GSLINC"
1797          LIBS="$LIBS $GSLLIB"
1798    fi
1799    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1800    if test ! "x$USE_EXTENDED_SRC" = x ; then
1801          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1802          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1803    fi
1804    
1805    printf "\n===  Checking system libraries  ===\n"
1806    printf "  Do we have the system() command using $FC...  "
1807    cat > genmake_tcomp.$FS <<EOF
1808          program hello
1809          call system('echo hi')
1810          end
1811    EOF
1812    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1813    RETVAL=$?
1814    if test "x$RETVAL" = x0 ; then
1815        HAVE_SYSTEM=t
1816        DEFINES="$DEFINES -DHAVE_SYSTEM"
1817        echo "yes"
1818    else
1819        HAVE_SYSTEM=
1820        echo "no"
1821    fi
1822    rm -f genmake_tcomp*
1823    
1824    printf "  Do we have the fdate() command using $FC...  "
1825    cat > genmake_tcomp.$FS <<EOF
1826          program hello
1827          CHARACTER*(128) string
1828          string = ' '
1829          call fdate( string )
1830          print *, string
1831          end
1832    EOF
1833    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1834    RETVAL=$?
1835    if test "x$RETVAL" = x0 ; then
1836        HAVE_FDATE=t
1837        DEFINES="$DEFINES -DHAVE_FDATE"
1838        echo "yes"
1839    else
1840        HAVE_FDATE=
1841        echo "no"
1842    fi
1843    rm -f genmake_tcomp*
1844    
1845    printf "  Do we have the etime() command using $FC...  "
1846    cat > genmake_tcomp.$FS <<EOF
1847          program hello
1848          REAL*4 ACTUAL, TARRAY(2)
1849          EXTERNAL ETIME
1850          REAL*4 ETIME
1851          actual = etime( tarray )
1852          print *, tarray
1853          end
1854    EOF
1855    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1856    RETVAL=$?
1857    if test "x$RETVAL" = x0 ; then
1858        HAVE_ETIME=t
1859        DEFINES="$DEFINES -DHAVE_ETIME"
1860        echo "yes"
1861    else
1862        HAVE_ETIME=
1863        echo "no"
1864    fi
1865    rm -f genmake_tcomp*
1866    
1867    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1868    check_HAVE_CLOC
1869    if test "x$HAVE_CLOC" != x ; then
1870        DEFINES="$DEFINES -DHAVE_CLOC"
1871        echo "yes"
1872    else
1873        echo "no"
1874        if test "x$EMBED_SRC" = xt ; then
1875            echo "    WARNING: you requested file embedding but it has"
1876            echo "      been disabled since C code cannot be called"
1877            EMBED_SRC=
1878        fi
1879    fi
1880    rm -f genmake_t*
1881    
1882    printf "  Can we unlimit the stack size using $FC...  "
1883    check_HAVE_SETRLSTK
1884    if test "x$HAVE_SETRLSTK" = xt ; then
1885        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1886        echo "yes"
1887    else
1888        echo "no"
1889    fi
1890    rm -f genmake_t*
1891    
1892    printf "  Can we register a signal handler using $FC...  "
1893    check_HAVE_SIGREG
1894    if test "x$HAVE_SIGREG" = xt ; then
1895        DEFINES="$DEFINES -DHAVE_SIGREG"
1896        echo "yes"
1897    else
1898        echo "no"
1899    fi
1900    rm -f genmake_t*
1901    
1902    printf "  Can we use stat() through C calls...  "
1903    check_HAVE_STAT
1904    if test "x$HAVE_STAT" != x ; then
1905        DEFINES="$DEFINES -DHAVE_STAT"
1906        echo "yes"
1907    else
1908        echo "no"
1909    fi
1910    rm -f genmake_t*
1911    
1912    printf "  Can we create NetCDF-enabled binaries...  "
1913    check_netcdf_libs
1914    if test "x$HAVE_NETCDF" != x ; then
1915        DEFINES="$DEFINES -DHAVE_NETCDF"
1916        echo "yes"
1917    else
1918        echo "no"
1919    fi
1920    
1921    printf "  Can we create LAPACK-enabled binaries...  "
1922    check_lapack_libs
1923    if test "x$HAVE_LAPACK" != x ; then
1924        DEFINES="$DEFINES -DHAVE_LAPACK"
1925        echo "yes"
1926    else
1927        echo "no"
1928    fi
1929    
1930    printf "  Can we call FLUSH intrinsic subroutine...  "
1931    check_HAVE_FLUSH
1932    if test "x$HAVE_FLUSH" = xt ; then
1933        DEFINES="$DEFINES -DHAVE_FLUSH"
1934        echo "yes"
1935    else
1936        echo "no"
1937    fi
1938    
1939    DEFINES="$DEFINES $IGNORE_TIME"
1940    if test "x$EMBED_SRC" = xt ; then
1941        build_embed_encode
1942    fi
1943    if test "x$EMBED_SRC" = xt ; then
1944        ENABLE="$ENABLE embed_files"
1945    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1946    fi
1947    
1948    printf "\n===  Setting defaults  ===\n"
1949    printf "  Adding MODS directories: "
1950    for d in $MODS ; do
1951        if test ! -d $d ; then
1952            echo
1953            echo "Error: MODS directory \"$d\" not found!"
1954            exit 1
1955        else
1956            printf "$d "
1957            SOURCEDIRS="$SOURCEDIRS $d"
1958            INCLUDEDIRS="$INCLUDEDIRS $d"
1959        fi
1960    done
1961    echo
1962    
1963    #if test "x${PLATFORM}" = x ; then
1964    #    PLATFORM=$p_PLATFORM
1965    #fi
1966    
1967  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1968      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1969        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1970          EXEDIR=../exe          EXEDIR=../exe
1971      else      else
1972          EXEDIR=.          EXEDIR=.
# Line 546  if test "x${TOOLSDIR}" = x ; then Line 1981  if test "x${TOOLSDIR}" = x ; then
1981      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1982  fi  fi
1983  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1984      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1985      exit 1      exit 1
1986  fi  fi
1987    if test "x$S64" = x ; then
1988        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1989        RETVAL=$?
1990        if test "x${RETVAL}" = x0 ; then
1991            S64='$(TOOLSDIR)/set64bitConst.sh'
1992        else
1993            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1994            RETVAL=$?
1995            if test "x${RETVAL}" = x0 ; then
1996                S64='$(TOOLSDIR)/set64bitConst.csh'
1997            else
1998                cat <<EOF
1999    
2000    ERROR: neither of the two default scripts:
2001    
2002        ${TOOLSDIR}/set64bitConst.sh
2003        ${TOOLSDIR}/set64bitConst.csh
2004    
2005      are working so please check paths or specify (with \$S64) a
2006      working version of this script.
2007    
2008    EOF
2009                exit 1
2010            fi
2011        fi
2012    fi
2013    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2014    
2015  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2016    
2017    #  Set Standard Code Directories:
2018    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2019        STANDARDDIRS="eesupp model"
2020    fi
2021    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2022    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2023    ckM=$?
2024    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2025    ckE=$?
2026    if test $ckM = 0 -a $ckE = 1 ; then
2027        STANDARDDIRS="$STANDARDDIRS eesupp"
2028    fi
2029    
2030  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2031  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2032  #  they appear as regular source code  #  they appear as regular source code
2033  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2034      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2035      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2036        ) > make_eesupp.errors 2>&1
2037      RETVAL=$?      RETVAL=$?
2038      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2039          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2040      else      else
2041          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2042          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2043          exit 1          exit 1
2044      fi      fi
2045  fi  fi
2046    
2047    #same for pkg/exch2 and pkg/regrid
2048    for pdir in exch2 regrid ; do
2049        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2050            echo "  Making source files in pkg/${pdir} from templates"
2051            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2052            ) > make_${pdir}.errors 2>&1
2053            RETVAL=$?
2054            if test "x${RETVAL}" = x0 ; then
2055                rm -f make_${pdir}.errors
2056            else
2057                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2058                cat make_${pdir}.errors 1>&2
2059                exit 1
2060            fi
2061        fi
2062    done
2063    
2064  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2065  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2066      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2067      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2068          PDEPEND=$tmp  fi
2069      else  if  test "x${PKG_DEPEND}" = x ; then
2070          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2071          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2072  else  else
2073      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2074          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2075          exit 1          exit 1
2076      fi      fi
2077        echo "  getting package dependency info from  $PKG_DEPEND"
2078    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2079        get_pdepend_list $PKG_DEPEND
2080  fi  fi
2081  echo "  getting package dependency info from  $PDEPEND"  
2082  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2083  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2084  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2085      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2086      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2087  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2088  if test ! "x${RETVAL}" = x0 ; then  fi
2089      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2090      exit 1          echo "Warning:  No package groups information was specified."
2091            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2092    else
2093        if test ! -r ${PKG_GROUPS} ; then
2094            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2095            exit 1
2096        fi
2097        echo "  getting package groups info from      $PKG_GROUPS"
2098  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2099    
2100  echo  -n "  checking default package list:  "  #  Search for packages to compile.
2101  if test "x${PDEFAULT}" = x ; then  echo "  checking list of packages to compile:"
2102      PDEFAULT="$ROOTDIR/pkg/pkg_default"  PKG_LIST=
2103    if test "x${PKG_LIST}" = x ; then
2104        for i in "." $MODS ; do
2105            if test -r $i"/packages.conf" ; then
2106                    PKG_LIST=$i"/packages.conf"
2107                    break
2108            fi
2109        done
2110  fi  fi
2111  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PKG_LIST}" = x ; then
2112      echo "default packages file disabled"      pkg_list='default_pkg_list'
2113        if test "x${PKG_GROUPS}" = x ; then
2114            echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2115            exit 1
2116        fi
2117  else  else
2118      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2119          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2120          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2121      else      else
2122          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2123          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2124          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2125          RETVAL=$?          RETVAL=$?
2126          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2127              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2128              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2129              exit 1              exit 1
2130          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    packages are:  $PACKAGES"  
2131      fi      fi
2132  fi  fi
2133    for i in $pkg_list ; do
2134        PACKAGES="$PACKAGES $i"
2135    done
2136    echo     "    before group expansion packages are:$PACKAGES"
2137    if test "x${PKG_GROUPS}" != x ; then
2138        RET=1
2139        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2140        echo "    after group expansion packages are: $PACKAGES"
2141    fi
2142    
2143  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2144    echo "" > ./.tmp_pack
2145    for i in $PACKAGES ; do
2146        echo $i >> ./.tmp_pack
2147    done
2148    for i in `grep  "-" ./.tmp_pack` ; do
2149        j=`echo $i | sed 's/[-]//'`
2150        DISABLE="$DISABLE $j"
2151    done
2152  pack=  pack=
2153  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2154      addit="t"      addit="t"
# Line 639  for p in $PACKAGES ; do Line 2163  for p in $PACKAGES ; do
2163  done  done
2164  PACKAGES="$pack"  PACKAGES="$pack"
2165  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2166  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
2167  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2168    # Test if each explicitly referenced package exists
2169  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2170      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2171          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2172            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2173          exit 1          exit 1
2174      fi      fi
2175      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2176  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2177  PACKAGES=  PACKAGES=
2178  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2179      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2180  done  done
2181  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2182    echo "    packages are: $PACKAGES"
2183    
2184    #  Check for package MNC: if NetCDF is available, then build the MNC
2185    #  template files ; otherwise, delete mnc from the list of packages.
2186    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2187    mnc_in=$?
2188    if test "x$HAVE_NETCDF" != xt ; then
2189        if test "x$mnc_in" = x0 ; then
2190            cat <<EOF
2191    *********************************************************************
2192    WARNING: the "mnc" package was enabled but tests failed to compile
2193      NetCDF applications.  Please check that:
2194    
2195      1) NetCDF is correctly installed for this compiler and
2196      2) the LIBS variable (within the "optfile") specifies the correct
2197           NetCDF library to link against.
2198    
2199      Due to this failure, the "mnc" package is now DISABLED.
2200    *********************************************************************
2201    EOF
2202            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2203            DISABLE="$DISABLE mnc"
2204        else
2205        #  this prevent to add mnc (due to pdepend rules) if not available
2206            DISABLE="$DISABLE mnc"
2207        fi
2208    else
2209        # we have NetCDF, we try to build MNC template files
2210        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2211        RETVAL=$?
2212        if test "x${RETVAL}" = x0 ; then
2213            rm -f make_mnc.errors
2214        else
2215            echo "Error: problem encountered while building source files in pkg/mnc:"
2216            cat make_mnc.errors 1>&2
2217            if test "x$mnc_in" = x0 ; then
2218                exit 1
2219            else
2220                DISABLE="$DISABLE mnc"
2221            fi
2222        fi
2223    fi
2224    
2225    #  Check for package PROFILES: if NetCDF is not available,
2226    #  then delete profiles from the list of available packages.
2227    if test "x$HAVE_NETCDF" != xt ; then
2228        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2229        RETVAL=$?
2230        if test "x$RETVAL" = x0 ; then
2231            cat <<EOF
2232    *********************************************************************
2233    WARNING: the "profiles" package was enabled but tests failed to
2234      compile NetCDF applications.  Please check that:
2235    
2236      1) NetCDF is correctly installed for this compiler and
2237      2) the LIBS variable (within the "optfile") specifies the correct
2238           NetCDF library to link against.
2239    
2240      Due to this failure, the "profiles" package is now DISABLED.
2241    *********************************************************************
2242    EOF
2243            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2244            DISABLE="$DISABLE profiles"
2245        else
2246        #  this prevent to add profiles (due to pdepend rules) if not available
2247            DISABLE="$DISABLE profiles"
2248        fi
2249    fi
2250    
2251    #  Check for package RADTRANS: if LAPACK is not available,
2252    #  then issue a warning that the direct radtrans solver is not available.
2253    if test "x$HAVE_LAPACK" != xt ; then
2254        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2255        RETVAL=$?
2256        if test "x$RETVAL" = x0 ; then
2257            cat <<EOF
2258    *********************************************************************
2259    WARNING: the "radtrans" package was enabled but tests failed to
2260      compile LAPACK applications.  This means that the direct radtrans
2261      solver is not available and compilation will fail if it is enabled.
2262      If you want to use the direct solver, please check that:
2263    
2264      1) LAPACK is correctly installed for this compiler and
2265      2) the LIBS variable (within the "optfile") specifies the correct
2266         LAPACK library to link against.
2267    *********************************************************************
2268    EOF
2269        fi
2270    fi
2271    
2272  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2273  ck=    echo "  applying package dependency rules"
2274  while test "x$ck" != xtt ; do    ck=
2275      while test "x$ck" != xtt ; do
2276      i=0      i=0
2277      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2278      rtot=$nname      rtot=$nname
2279      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2280    
2281          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2282          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 674  while test "x$ck" != xtt ; do Line 2288  while test "x$ck" != xtt ; do
2288                  pin="t"                  pin="t"
2289              fi              fi
2290          done          done
2291            #  or in the current $STANDARDDIRS list?
2292            for p in $STANDARDDIRS ; do
2293                if test "x$p" = "x$pname" ; then pin="t" ; fi
2294            done
2295    
2296          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2297          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 696  while test "x$ck" != xtt ; do Line 2314  while test "x$ck" != xtt ; do
2314    
2315          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2316          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2317                #echo "   " $pname ": need to add :" $dname
2318              in_dis="f"              in_dis="f"
2319              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2320                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 716  while test "x$ck" != xtt ; do Line 2335  while test "x$ck" != xtt ; do
2335          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2336          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2337              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2338              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2339              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2340              exit 1              exit 1
2341          fi          fi
2342          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2343            #i=$(( $i + 1 ))
2344      done      done
2345      ck=$ck"t"      ck=$ck"t"
2346  done    done
2347  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2348    fi
2349  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2350      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2351      if test -d $adr ; then      if test -d $adr ; then
2352          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2353          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2354            if test "x$i" = xautodiff ; then
2355                AUTODIFF_PKG_USED=t
2356            fi
2357      else      else
2358          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2359          exit 1          exit 1
2360      fi      fi
2361  done  done
2362    
2363  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2364  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2365  #  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2366  # echo -n "  Setting package-specific CPP flags:  "  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths="$SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2367  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2368  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2369  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2370  all_pack=  all_pack=
2371    DISABLED_PACKAGES=
2372  for n in $names ; do  for n in $names ; do
2373      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2374          has_pack="f"          has_pack="f"
# Line 807  for n in $names ; do Line 2379  for n in $names ; do
2379              fi              fi
2380          done          done
2381          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2382              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2383              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2384          fi          fi
2385      fi      fi
2386  done  done
2387  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2388  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2389      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2390      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2391    #eh3 DEFINES="$DEFINES -D$def"
2392    
2393  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2394      case $i in      case $i in
2395          aim_v23)          aim_v23)
2396              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2397                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2398              ;;              ;;
2399      esac      esac
2400  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2401    
2402  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2403    
2404  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2405  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2406  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" != x ; then
2407  for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2408      adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2409      if test ! -d $adr ; then          if test ! -d $adr ; then
2410          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2411          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2412          exit 1              exit 1
2413      else          else
2414          SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2415            fi
2416            adr="$ROOTDIR/$d/inc"
2417            if test ! -d $adr ; then
2418                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2419                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2420                exit 1
2421            else
2422                INCLUDEDIRS="$INCLUDEDIRS $adr"
2423            fi
2424        done
2425    fi
2426    
2427    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2428    echo "    of \"#define \"-type statements that are no longer allowed:"
2429    CPP_OPTIONS=
2430    CPP_EEOPTIONS=
2431    spaths=". $INCLUDEDIRS"
2432    names=`ls -1 "$ROOTDIR/pkg"`
2433    for i in $spaths ; do
2434        try="$i/CPP_OPTIONS.h"
2435        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2436            echo "    found CPP_OPTIONS=\"$try\""
2437            CPP_OPTIONS="$try"
2438            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2439            for n in $names ; do
2440                test_for_package_in_cpp_options $CPP_OPTIONS $n
2441            done
2442      fi      fi
2443      adr="$ROOTDIR/$d/inc"      try="$i/CPP_EEOPTIONS.h"
2444      if test ! -d $adr ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2445          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          echo "    found CPP_EEOPTIONS=\"$try\""
2446          echo "  is correct and that you correctly specified the STANDARDDIRS option"          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2447          exit 1  #**** not yet enabled ****
2448      else  #        test_for_mpi_in_cpp_eeoptions $try
2449          INCLUDEDIRS="$INCLUDEDIRS $adr"  #**** not yet enabled ****
2450            CPP_EEOPTIONS="$try"
2451      fi      fi
2452  done  done
2453    if test "x$CPP_OPTIONS" = x ; then
2454        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2455        exit 1
2456    fi
2457    
2458    #  Here, we build the list of files to be "run through" the adjoint
2459    #  compiler.
2460    if test -f ./adSrcFiles.tmp ; then
2461        rm -f ./adSrcFiles.tmp
2462    fi
2463    echo "  Creating the list of files for the adjoint compiler."
2464    touch adSrcFiles.tmp
2465    for i in $SOURCEDIRS ; do
2466        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2467        for j in $list_files ; do
2468            cat $i/$j >> adSrcFiles.tmp
2469        done
2470    done
2471    if test ! "x"$FS = "x.f" ; then
2472        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2473        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2474    fi
2475    
2476  echo  echo
2477  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2478  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2479  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2480      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2481          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2482      fi      fi
2483  done  done
2484    
2485    if test ! "x$DIVA" = x ; then
2486        echo "  Creating the pseudo-MPI include directory"
2487        INCLUDES="-I./mpi_headers $INCLUDES"
2488        rm -rf ./mpi_headers
2489        mkdir -p ./mpi_headers
2490    
2491        if test "x$MPIINCLUDEDIR" = x ; then
2492            if test "x$MPIHOME" = x ; then
2493                MPIHOME='/usr'
2494            fi
2495            MPIINCLUDEDIR='$MPIHOME/include'
2496        fi
2497    
2498        if test -r $MPIINCLUDEDIR/mpif.h ; then
2499            for i in $MPI_HEADER_FILES; do
2500                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2501            done
2502    
2503            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2504        else
2505            echo " We cannot create a copy of mpif.h!"
2506    #       exit -1
2507        fi
2508    fi
2509    
2510  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2511  rm -rf .links.tmp  rm -rf .links.tmp
2512  mkdir .links.tmp  mkdir .links.tmp
2513    touch .links.tmp/foo
2514    if test ! -r ".links.tmp/foo" ; then
2515        echo
2516        echo "ERROR : something is wrong with your directory permissions or"
2517        echo "   your user file-creation mask (\"umask\") since creating a"
2518        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2519        echo "   not working.  Please try setting your umask to something"
2520        echo "   sane such as:"
2521        echo
2522        echo "      umask 0002"
2523        echo
2524        echo "   and please verify that you have the proper permissions for"
2525        echo "   creating sub-directories and then reading files created"
2526        echo "   within them."
2527        echo
2528        exit 1
2529    fi
2530    rm -f .links.tmp/foo
2531    
2532    if test "x$OPENAD" != x ; then
2533        OAD_DONT_COMPILE="/dev/null"
2534        OAD_DONT_TRANSFORM="/dev/null"
2535        OAD_KEEP_ORIGINAL="/dev/null"
2536        OAD_CB2M_FILES="/dev/null"
2537        OADTOOLS="$TOOLSDIR/OAD_support"
2538        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2539    cat >> "oadtempflile" <<EOF
2540    $OADTOOLS
2541    EOF
2542        echo "  looking for dontCompile file:  "
2543        for i in "." $MODS ; do
2544            if test -r $i"/dontCompile" ; then
2545                OAD_DONT_COMPILE=$i"/dontCompile"
2546                echo "     found $OAD_DONT_COMPILE"
2547                break
2548            fi
2549        done
2550        echo "  looking for dontTransform file:  "
2551        for i in "." $MODS ; do
2552            if test -r $i"/dontTransform" ; then
2553                OAD_DONT_TRANSFORM=$i"/dontTransform"
2554                echo "     found $OAD_DONT_TRANSFORM"
2555                break
2556            fi
2557        done
2558        echo "  looking for keepOriginal file:  "
2559        for i in "." $MODS ; do
2560            if test -r $i"/keepOriginal" ; then
2561                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2562                echo "     found $OAD_KEEP_ORIGINAL"
2563                break
2564            fi
2565        done
2566        echo "  looking for cb2mFiles:  "
2567        for i in "." $MODS ; do
2568            if test -r $i"/cb2mFiles" ; then
2569                OAD_CB2M_FILES=$i"/cb2mFiles"
2570                echo "     found $OAD_CB2M_FILES"
2571                break
2572            fi
2573        done
2574        echo "   OpenAD exceptions:  "
2575    fi
2576    
2577  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2578  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2579  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2580  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2581  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2582  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2583  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  printf 'H_SRC_FILES = '   > hsrclist.tmp
2584    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2585    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2586  for d in $alldirs ; do  for d in $alldirs ; do
2587      deplist=      deplist=
2588      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2589      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2590        if test "x$OPENAD" != x ; then
2591            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2592        fi
2593      for sf in $sfiles ; do      for sf in $sfiles ; do
2594          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2595              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2596                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2597                  touch .links.tmp/$sf                  case $d/$sf in
2598                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2599                  case $extn in                          ignore_f=t
2600                      F)                          ;;
2601                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2602                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2603                            ;;
2604                      ./FC_NAMEMANGLE.h)
2605                            ignore_f=t
2606                            ;;
2607                      ./BUILD_INFO.h)
2608                            ignore_f=t
2609                            ;;
2610                      ./EMBEDDED_FILES.h)
2611                            ignore_f=t
2612                            ;;
2613                      *)
2614                            #  For the local directory *ONLY*,
2615                            #  ignore all soft-links
2616                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2617                                ignore_f=t
2618                            else
2619                                touch .links.tmp/$sf
2620                                deplist="$deplist $sf"
2621                            fi
2622                            ;;
2623                    esac
2624                    if test "x$ignore_f" = xf ; then
2625                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2626                        case $extn in
2627                          F)
2628                            echo    " \\"  >> F77srclist.tmp
2629                            printf " $sf" >> F77srclist.tmp
2630                            if test "x$OPENAD" != x ; then
2631                                basename=${sf%%.F}
2632                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2633                                if test -z "$isAD" ; then
2634                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2635                                    if test -z "$toBeIgnored" ; then
2636                                        echo    " \\"  >> nonADF77srclist.tmp
2637                                        printf " $sf" >> nonADF77srclist.tmp
2638                                    else
2639                                        echo "    not to be compiled   :  $sf"
2640                                    fi
2641                                else # file is initially listed as an AD file we want to exclude it
2642                                     # or we want to retain the untransformed version
2643                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2644                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2645                                    if test -n "$notToBeTransformed"; then
2646                                        echo "    not to be transformed:  $sf"
2647                                    fi
2648                                    if test -n "$untransformedVersionToBeKept" ; then
2649                                        echo "    original to be kept  :  $sf"
2650                                    fi
2651                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2652                                        echo    " \\"  >> nonADF77srclist.tmp
2653                                        printf " $sf" >> nonADF77srclist.tmp
2654                                    fi
2655                                fi
2656                            fi
2657                          ;;                          ;;
2658                      F90)                      F90)
2659                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2660                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2661                          ;;                          ;;
2662                      c)                      c)
2663                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2664                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2665                          ;;                          ;;
2666                      h)                      h)
2667                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2668                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2669                          ;;                          ;;
2670                  esac                      flow)
2671                            echo    " \\"  >> ad_flow_files.tmp
2672                            printf " $sf" >> ad_flow_files.tmp
2673                            ;;
2674                       esac
2675                    fi
2676              fi              fi
2677          fi          fi
2678      done      done
2679      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2680          if test "$d" != "." ; then
2681          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2682          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2683          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2684          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2685    # This may happen when make thinks that a header file has to be "remade"
2686    # because a module it depends on has changed.  In this case we do nothing.
2687            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2688          fi
2689      fi      fi
2690  done  done
2691  rm -rf .links.tmp  rm -rf .links.tmp
2692  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2693  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2694  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2695  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2696    echo "" >> hsrclist.tmp
2697    echo "" >> ad_flow_files.tmp
2698    
2699    CMDLINE=$0
2700    for xx in "$@" ; do nw=`echo $xx | wc -w`
2701        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2702                            else CMDLINE="$CMDLINE '$xx'" ; fi
2703    done
2704    
2705  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2706      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2707  fi  fi
2708  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2709  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 946  echo "#    $MACHINE" >> $MAKEFILE Line 2711  echo "#    $MACHINE" >> $MAKEFILE
2711  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2712  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2713  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2714  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2715  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2716  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2717    
2718    EXE_AD=$EXECUTABLE"_ad"
2719    EXE_FTL=$EXECUTABLE"_ftl"
2720    EXE_SVD=$EXECUTABLE"_svd"
2721    
2722  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2723  #  #
2724    # OPTFILE="$OPTFILE"
2725    #
2726  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2727  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2728  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 961  cat >>$MAKEFILE <<EOF Line 2733  cat >>$MAKEFILE <<EOF
2733  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2734  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2735  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2736  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2737  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2738  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 970  cat >>$MAKEFILE <<EOF Line 2740  cat >>$MAKEFILE <<EOF
2740  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2741    
2742  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2743  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2744  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2745  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2746  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2747  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2748  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2749    OADTOOLS    = ${OADTOOLS}
2750    
2751    #eh3  new defines for the adjoint work
2752    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2753    EXE_AD      = ${EXE_AD}
2754    EXE_FTL     = ${EXE_FTL}
2755    EXE_SVD     = ${EXE_SVD}
2756    
2757    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2758    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2759    
2760    # These files are created by Makefile
2761    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2762  EOF  EOF
2763    
2764  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2765        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2766    else
2767        echo "EMBEDDED_FILES = " >>$MAKEFILE
2768    fi
2769    
2770    # extract default cpp search path so we can pass it to makedepend
2771    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2772    
2773  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2774  # Unix ln (link)  # Unix ln (link)
2775  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2776  # Dependency generator  # Dependency generator
2777  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2778  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 994  KPP = ${KPP} Line 2781  KPP = ${KPP}
2781  FC = ${FC}  FC = ${FC}
2782  # Fortran compiler  # Fortran compiler
2783  F90C = ${F90C}  F90C = ${F90C}
2784    # C compiler
2785    CC = ${CC}
2786  # Link editor  # Link editor
2787  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2788    
2789  # Defines for CPP  # Defines for CPP
2790  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2791  # Includes for CPP  # Includes for CPP
2792  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2793    # default CPP includes for makedepend
2794    CPPINCLUDES = ${CPPINCLUDES}
2795  # Flags for KPP  # Flags for KPP
2796  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2797  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2798  # Optim./debug for FC  # Optim./debug for FC
2799  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2800  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2801  # Optim./debug for FC  # Optim./debug for FC
2802  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2803  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2804    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2805  # Flags for CC  # Flags for CC
2806  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2807  # Files that should not be optimized  # Files that should not be optimized
2808  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2809  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2810  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2811  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2812  # Name of the Mekfile  # Name of the makefile
2813  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2814    # Name of the make program
2815    MAKE = ${MAKE}
2816    
2817  EOF  EOF
2818    
2819  cat srclist.inc    >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2820  cat csrclist.inc   >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2821  cat f90srclist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2822  cat hlist.inc      >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2823  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2824  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2825  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2826    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2827  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2828    echo >> $MAKEFILE
2829    
2830    # add definitions for preprocessed sources
2831    # and note that not all systems allow case sensitive extensions
2832    # hence the $FS and $FS90 here.
2833    # for fixed format f90 files we use ff90 or FF90 resp
2834    # but these are not expected to be the original source files
2835    
2836    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2837    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2838    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2839    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2840    echo >> $MAKEFILE
2841    echo '.SUFFIXES:' >> $MAKEFILE
2842    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2843    
2844  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2845    
2846  .SUFFIXES:  all: fwd_exe_target
2847  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2848            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2849            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2850            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2851            @-rm -f ad_config.template
2852            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2853    
2854  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2855  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2856          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2857    
2858  depend:  depend:
2859          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2860          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2861          ../../../tools/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2862            -rm -f makedepend.out
2863    
2864  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  lib: libmitgcmuv.a
2865    
2866  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2867            ar rcv libmitgcmuv.a \$(OBJFILES)
2868            ar d   libmitgcmuv.a main.o
2869    
2870    obj: \$(OBJFILES)
2871    
2872    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2873    
2874    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2875    
2876  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2877          @printf 'running ... '          @printf 'running ... '
2878          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2879    
2880    # remove most of the files that "make" generates
2881  clean:  clean:
2882          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2883            -rm -rf *.o
2884            -rm -rf *.$FS *.flowdir
2885            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2886    
2887    # remove most of the files that "make" and "make depend" generate
2888  Clean:  Clean:
2889          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2890          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2891          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2892            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2893            -rm -f genmake_warnings genmake_errors make.log
2894    
2895    # remove also the executable, files that "genmake2" generates (except Makefile)
2896    #         and output from a run (plus log files from testreport)
2897  CLEAN:  CLEAN:
2898          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2899            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2900            -rm -f $LOGFILE genmake_state genmake_*optfile
2901            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2902          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2903          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2904          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2905          -rm -f \$(EXECUTABLE)          -rm -f *.txt STD* *diagnostics.log datetime
2906            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2907            -rm -rf mnc_test_*
2908    
2909  makefile:  makefile:
2910          ${0} $@          $THIS_SCRIPT $G2ARGS
2911  cleanlinks:  cleanlinks:
2912          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2913    
2914  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2915  .F.f:  ${PACKAGES_DOT_H}:
2916          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
2917  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2918    AD_CONFIG.h:
2919            @echo Creating \$@ ...
2920            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2921    FC_NAMEMANGLE.h:
2922            @echo Creating \$@ ...
2923            echo "$FC_NAMEMANGLE" > \$@
2924    
2925    BUILD_INFO.h:
2926            @echo Creating \$@ ...
2927    EOF
2928    
2929    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2930    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2931    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2932    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2933    
2934    if test "x$EMBED_SRC" = xt ; then
2935        cat >>$MAKEFILE <<EOF
2936    
2937    decode_files.o : EMBEDDED_FILES.h
2938    
2939    ##  \$(F77_PP_SRC_FILES)
2940    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2941            @echo Creating \$@ ...
2942            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2943            -rm -f all_fF.tar.gz
2944            -gzip all_fF.tar
2945    
2946    EMBEDDED_FILES.h : all_fF.tar.gz
2947            @echo Creating \$@ ...
2948            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2949    
2950    EOF
2951    fi
2952    
2953    cat >>$MAKEFILE <<EOF
2954    
2955    # The normal chain of rules is (  .F - .$FS - .o  )
2956    
2957    ## This nullifies any default implicit rules concerning these two file types:
2958    ## %.o : %.F
2959    
2960    # C preprocessing and replacing the _d in constants:
2961    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
2962    
2963    .F.$FS:
2964            \$(CPPCMD)  > \$@
2965    .$FS.o:
2966            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2967    .F.o:
2968          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2969  .F90.f90:  .F90.$FS90:
2970          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
2971  .f90.o:  .FF90.f$FS90:
2972            \$(CPPCMD)  > \$@
2973    .$FS90.o:
2974          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2975    .f$FS90.o:
2976            cp \$< \$(basename  \$<).f90
2977            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2978  .c.o:  .c.o:
2979          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2980    .flow.flowdir:
2981            \$(CPPCMD) > \$@
2982    
2983  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2984  .F.p:  .F.p:
2985          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
2986  .p.f:  .p.$FS:
2987          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2988    
2989  EOF  EOF
2990    
2991    #=========================================
2992    #===  Automatic Differentiation Rules  ===
2993    #===  for TAMC/TAF  ======================
2994    
2995    if test "x$OPENAD" = x ; then
2996    
2997    cat >>$MAKEFILE <<EOF
2998    
2999    TAMC           = ${TAMC}
3000    TAF            = ${TAF}
3001    
3002    TAF_EXTRA      = ${TAF_EXTRA}
3003    TAMC_EXTRA     = ${TAMC_EXTRA}
3004    
3005    EOF
3006    
3007    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
3008    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
3009    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3010    for i in $ad_vars ; do
3011        name=$i
3012        t1="t2=\$"`echo "$i"`
3013        eval $t1
3014        printf "%-20s = " $name >> $MAKEFILE
3015        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3016    done
3017    
3018    echo "  Add the source list for AD code generation"
3019    echo >> $MAKEFILE
3020    printf "AD_FILES = " >> $MAKEFILE
3021    AD_FILES=`cat adSrcFiles.tmp`
3022    for i in $AD_FILES ; do
3023        echo    " \\" >> $MAKEFILE
3024        printf " $i" >> $MAKEFILE
3025    done
3026    echo >> $MAKEFILE
3027    rm -f adSrcFiles.tmp
3028    
3029    cat >>$MAKEFILE <<EOF
3030    
3031    # ... AD ...
3032    adall: ad_exe_target
3033    adtaf: ad_taf_output.$FS
3034    adtamc: ad_tamc_output.$FS
3035    
3036    ad_exe_target:
3037            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3038            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3039            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3040            @-rm -f ad_config.template
3041            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3042    
3043    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3044            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3045            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3046            @-rm -f ad_config.template
3047            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3048            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3049            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3050    
3051    ad_taf_output.$FS: ad_input_code.$FS
3052            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3053            ls -l ad_input_code_ad.$FS
3054            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3055    
3056    adtafonly:
3057            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3058            ls -l ad_input_code_ad.$FS
3059            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3060    
3061    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3062            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3063    
3064    ad_tamc_output.$FS: ad_input_code.$FS
3065            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3066            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3067    
3068    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3069            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3070    
3071    adonlyfwd:
3072            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3073    
3074    adtrick:
3075            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3076    
3077    adobj: ad_taf_output.o \$(OBJFILES)
3078    
3079    # ... FTL ...
3080    ftlall: ftl_exe_target
3081    ftltaf: ftl_taf_output.$FS
3082    ftltamc: ftl_tamc_output.$FS
3083    
3084    ftl_exe_target:
3085            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3086            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3087            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3088            @-rm -f ad_config.template
3089            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3090    
3091    ftl_input_code.$FS: \$(AD_FILES)
3092            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3093            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3094            @-rm -f ad_config.template
3095            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3096            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3097            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3098    
3099    ftl_taf_output.$FS: ftl_input_code.$FS
3100            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3101            ls -l ftl_input_code_ftl.$FS
3102            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3103    
3104    ftltafonly:
3105            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3106            ls -l ftl_input_code_ftl.$FS
3107            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3108    
3109    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3110            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3111    
3112    ftl_tamc_output.$FS: ftl_input_code.$FS
3113            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3114            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3115    
3116    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3117            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3118    
3119    # ... SVD ...
3120    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3121            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3122            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3123    svdall: svd_touch svd_taf
3124    
3125    svd_taf: \$(OBJFILES)
3126            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3127    
3128            @echo "--->>> Only COMPILE svd code! <<<---"
3129            @echo "--->>> Assumes you previously <<<---"
3130            @echo "--->>> did make svdtaf        <<<---"
3131    
3132    svd_touch:
3133            @echo "--->>> Only COMPILE svd code! <<<---"
3134            @echo "--->>> Assumes you previously <<<---"
3135            @echo "--->>> did make svdtaf        <<<---"
3136            touch ad_taf_output.$FS ftl_taf_output.$FS
3137            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3138            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3139            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3140            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3141            @-rm -f ad_config.template
3142    
3143    EOF
3144    
3145    fi
3146    
3147    #===  for OpenAD  ========================
3148    
3149    if test "x$OPENAD" != x ; then
3150    
3151    # ============ begin OpenAD specific section ==============
3152    
3153    cat >>$MAKEFILE <<EOF
3154    
3155    # all the source files linked from the various locations:
3156    ALL_LINKED_FILES= \
3157    \$(F77_SRC_FILES) \
3158    \$(C_SRC_FILES) \
3159    \$(H_SRC_FILES) \
3160    \$(F90_SRC_FILES) \
3161    \$(SPECIAL_FILES)
3162    
3163    ifndef OPENADROOT
3164      \$(error "Error:  environment variable OPENADROOT not defined!")
3165    endif
3166    
3167    ifndef XAIFSCHEMAROOT
3168      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3169    endif
3170    
3171    ifndef XAIFBOOSTERROOT
3172      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3173    endif
3174    
3175    EOF
3176    
3177    echo "  Add the source list for common block to module conversion "
3178    echo >> $MAKEFILE
3179    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3180    for i in `cat ${OAD_CB2M_FILES}` ; do
3181      echo    " \\" >> $MAKEFILE
3182      printf " $i" >> $MAKEFILE
3183    done
3184    echo >> $MAKEFILE
3185    
3186    echo "  Add the source list for AD code generation"
3187    echo >> $MAKEFILE
3188    printf "AD_FILES = " >> $MAKEFILE
3189    for i in `cat ${OAD_CB2M_FILES}` ; do
3190      echo    " \\" >> $MAKEFILE
3191      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3192    done
3193    AD_FILES=`cat adSrcFiles.tmp`
3194    for i in $AD_FILES ; do
3195      basename=${i%%.f}
3196      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3197      if test -z "$toBeIgnored" ; then
3198        echo    " \\" >> $MAKEFILE
3199        printf " $i" >> $MAKEFILE
3200      fi
3201    done
3202    echo >> $MAKEFILE
3203    rm -f adSrcFiles.tmp
3204    
3205    cat >>$MAKEFILE <<EOF
3206    
3207    adAll: \$(EXE_AD)
3208    .PHONY: adAll
3209    
3210    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3211    
3212    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3213    
3214    .PHONY: adDepend
3215    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3216            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3217            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3218            -rm -f makedepend.out
3219    
3220    OPENAD_SUPPORT_F90_SRC_FILES = \
3221    w2f__types.F90 \
3222    OAD_active.F90 \
3223    OAD_cp.F90 \
3224    OAD_rev.F90 \
3225    OAD_tape.F90
3226    
3227    OPENAD_SUPPORT_C_SRC_FILES = \
3228    iaddr.c \
3229    timeRatio.c
3230    
3231    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3232            cat \$^ > \$@
3233    
3234    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3235            cat \$^ > \$@
3236    
3237    f95_test.out: f95_test_mods.f90 f95_test.f90
3238            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3239            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3240    
3241    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3242    
3243    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3244    
3245    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3246    
3247    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3248            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3249    
3250    # create sources files modules from header files containing common blocks
3251    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3252            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3253    
3254    # create new header files with USE statements for the new modules made above
3255    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3256            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3257    
3258    # change the include directives of everybody to refer to  the new header files with the USE statements
3259    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3260            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3261    
3262    # makefile debug rule
3263    small_f: \$(CB2M_F90_PP_SRC_FILES)
3264    .PHONY: small_f
3265    
3266    ad_output.txt: \$(EXE_AD)
3267            @printf 'linking data files ... '
3268            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3269            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3270            @printf 'running ... '
3271            @./\$(EXE_AD) > \$@
3272    
3273    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3274            cat \$^ > \$@
3275    
3276    # canonicalizer
3277    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3278            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3279    
3280    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3281    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3282            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3283    
3284    # F -> WHIRL
3285    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3286            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3287    
3288    # WHIRL -> XAIF
3289    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3290            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3291    
3292    # XAIF -> XAIF'
3293    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3294            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3295    
3296    # XAIF' -> WHIRL'
3297    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3298            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3299    
3300    # WHIRL' -> F'
3301    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3302            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3303    
3304    # insert template directives
3305    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3306            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3307    
3308    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3309    # postprocess F'
3310    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3311            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3312            # the target is a placeholder to trigger a single execution of the rule
3313            touch \$@
3314    # put this so make knows about the postprocessing output
3315    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3316    
3317    # link the XAIF schema files
3318    %.xsd:
3319            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3320    
3321    # link the support files:
3322    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3323            \$(LN) \${OADTOOLS}/\$@ .
3324    
3325    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3326    
3327    # ============ end OpenAD specific section ==============
3328    
3329    EOF
3330    
3331    fi
3332    
3333    #=========================================
3334    
3335    if test "x$EXEHOOK" != x ; then
3336        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3337    fi
3338    
3339  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
3340  for i in $KPPFILES ; do  for i in $KPPFILES ; do
3341      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 1098  for i in $KPPFILES ; do Line 3343  for i in $KPPFILES ; do
3343      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3344          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3345      fi      fi
3346      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3347  done  done
3348    
3349  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1108  for i in $NOOPTFILES ; do Line 3353  for i in $NOOPTFILES ; do
3353      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3354          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3355      fi      fi
3356      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3357      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3358  done  done
3359    
# Line 1120  echo "  Adding makedepend marker" Line 3365  echo "  Adding makedepend marker"
3365  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3366    
3367  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3368    
3369    # Create special header files
3370    $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3371    if test ! -f $PACKAGES_DOT_H ; then
3372        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3373    else
3374        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3375        RETVAL=$?
3376        if test "x$RETVAL" = x0 ; then
3377            rm -f $PACKAGES_DOT_H".tmp"
3378        else
3379            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3380            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3381        fi
3382    fi
3383    if test ! -f AD_CONFIG.h ; then
3384        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3385    fi
3386    
3387    #  Write the "state" for future records
3388    if test "x$DUMPSTATE" = xt ; then
3389        printf "" > genmake_state
3390        for i in $gm_state ; do
3391            t1="t2=\$$i"
3392            eval $t1
3393            echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3394        done
3395    fi

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