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revision 1.39 by edhill, Fri Nov 14 19:01:36 2003 UTC revision 1.67 by adcroft, Tue Feb 24 19:00:32 2004 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          echo -n "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 73  find_possible_configs()  { Line 78  find_possible_configs()  {
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
86            
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
# Line 149  EOF Line 145  EOF
145          echo "   "$p_FC          echo "   "$p_FC
146          if test "x$FC" = x ; then          if test "x$FC" = x ; then
147              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
148                echo "  Setting FORTRAN compiler to: "$FC
149          fi          fi
150      fi      fi
151    
152      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
153          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
154          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
155              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
156              echo "  The options file:  $p_OF"          fi
157              echo "    appears to match so we'll use it."      fi
158              break  #    echo "  The options file:  $p_OF"
159          fi  #    echo "    appears to match so we'll use it."
160      done  #   for i in $p_FC ; do
161    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
162    #if test -r $p_OF ; then
163    #    OPTFILE=$p_OF
164    #    echo "  The options file:  $p_OF"
165    #    echo "    appears to match so we'll use it."
166    #    break
167    #fi
168    #   done
169      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
170          cat 1>&2 <<EOF          cat 1>&2 <<EOF
171    
# Line 225  get_pdepend_list()  { Line 230  get_pdepend_list()  {
230    
231  #  Explain usage  #  Explain usage
232  usage()  {  usage()  {
233      echo  cat <<EOF
234      echo "Usage: "$0" [OPTIONS]"  
235      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
236      echo    where [OPTIONS] can be:
237      echo "    -help | --help | -h | --h"  
238      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
239      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
240      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
241      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
242      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
243      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
244      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
245      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
246      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
247      echo "    -makefile NAME | -mf NAME"  
248      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
249      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
250      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
251      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
252      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
253      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
254      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
255      echo "    -disable NAME | --disable NAME"  
256      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
257      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
258      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
259      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
260      echo "      -standarddirs=NAME | --standarddirs=NAME"  
261      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
262      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
263  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
264  #    echo "      -cpp=NAME | --cpp=NAME"  
265      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
266      echo "      -fc=NAME | --fc=NAME"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
267      echo "    -[no]ieee | --[no]ieee"            Specify the location of the MITgcm ROOTDIR as "NAME".
268      echo "    -[no]mpi | --[no]mpi"            By default, genamke will try to find the location by
269      echo "    -[no]jam | --[no]jam"            looking in parent directories (up to the 5th parent).
270      echo  
271      echo "  and NAME is a string such as:"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
272      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
273      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Here, "NAME" specifies a list of directories that are
274      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            used for additional source code.  Files found in the
275      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            "mods list" are given preference over files of the same
276      echo            name found elsewhere.
277      echo "  which, depending upon your shell, may need to be single-quoted"  
278      echo "  if it contains spaces, dashes, or other special characters."      -disable NAME | --disable NAME
279          -disable=NAME | --disable=NAME
280              Here "NAME" specifies a list of packages that we don't
281              want to use.  If this violates package dependencies,
282              genamke will exit with an error message.
283    
284        -enable NAME | --enable NAME
285          -enable=NAME | --enable=NAME
286              Here "NAME" specifies a list of packages that we wish
287              to specifically enable.  If this violates package
288              dependencies, genamke will exit with an error message.
289    
290        -standarddirs NAME | --standarddirs NAME
291          -standarddirs=NAME | --standarddirs=NAME
292              Here, "NAME" specifies a list of directories to be
293              used as the "standard" code.
294    
295        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
296          -fc=NAME | --fc=NAME
297              Use "NAME" as the fortran compiler.  By default, genmake
298              will search for a working compiler by trying a list of
299              "usual suspects" such as g77, f77, etc.
300    
301        -[no]ieee | --[no]ieee
302              Do or don't use IEEE numerics.  Note that this option
303              *only* works if it is supported by the OPTFILE that
304              is being used.
305    
306        -mpi | --mpi
307              Include MPI header files and link to MPI libraries
308        -mpi=PATH | --mpi=PATH
309              Include MPI header files and link to MPI libraries using MPI_ROOT
310              set to PATH. i.e. Include files from $PATH/include, link to libraries
311              from $PATH/lib and use binaries from $PATH/bin.
312    
313      While it is most often a single word, the "NAME" variables specified
314      above can in many cases be a space-delimited string such as:
315    
316        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
317        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
318        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
319    
320      which, depending upon your shell, may need to be single-quoted.
321    
322      For more detailed genmake documentation, please see:
323    
324        http://mitgcm.org/devel_HOWTO/
325    
326    EOF
327    
328      exit 1      exit 1
329  }  }
330    
# Line 293  WARNING: Please contact <MITgcm-support@ Line 347  WARNING: Please contact <MITgcm-support@
347  EOF  EOF
348          return 1          return 1
349      fi      fi
350      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
351      RETVAL=$?      RETVAL=$?
352      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
353          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 323  WARNING: Please contact <MITgcm-support@ Line 377  WARNING: Please contact <MITgcm-support@
377  EOF  EOF
378          return 1          return 1
379      fi      fi
380      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
381      RETVAL=$?      RETVAL=$?
382      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
383          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
# Line 399  EOF Line 453  EOF
453  }  }
454    
455    
456    check_netcdf_libs()  {
457        cat <<EOF > genmake_tnc.F
458          program fgennc
459    #include "netcdf.inc"
460          integer iret, ncid, xid
461          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
462          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
463          iret = nf_def_dim(ncid, 'X', 11, xid)
464          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
465          iret = nf_close(ncid)
466          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
467          end
468    EOF
469        $CPP genmake_tnc.F > genmake_tnc.f  \
470            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
471        RET_COMPILE=$?
472        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
473        RETVAL=$?
474        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
475            HAVE_NETCDF=t
476        else
477            # try again with "-lnetcdf" added to the libs
478            $CPP genmake_tnc.F > genmake_tnc.f  \
479                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
480                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
481            RET_COMPILE=$?
482            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
483            RETVAL=$?
484            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
485                LIBS="$LIBS -lnetcdf"
486                HAVE_NETCDF=t
487            else
488                cat genmake_tnc.log >> genmake_warnings
489            fi
490        fi
491        rm -f genmake_tnc*
492    }
493    
494    
495    
496    ###############################################################################
497    #   Sequential part of script starts here
498    ###############################################################################
499    
500  #  Set defaults here  #  Set defaults here
501  COMMANDL="$0 $@"  COMMANDL="$0 $@"
502    
# Line 407  LN= Line 505  LN=
505  S64=  S64=
506  KPP=  KPP=
507  FC=  FC=
508    CPP=
509  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
510  DEFINES=  DEFINES=
511  PACKAGES=  PACKAGES=
512  ENABLE=  ENABLE=
# Line 429  LIBS= Line 527  LIBS=
527  KPPFILES=  KPPFILES=
528  NOOPTFILES=  NOOPTFILES=
529  NOOPTFLAGS=  NOOPTFLAGS=
530    MPI=
531    MPIPATH=
532    
533  # DEFINES checked by test compilation  # DEFINES checked by test compilation
534  HAVE_SYSTEM=  HAVE_SYSTEM=
535  HAVE_FDATE=  HAVE_FDATE=
536  FC_NAMEMANGLE=  FC_NAMEMANGLE=
537  HAVE_CLOC=  HAVE_CLOC=
538    HAVE_NETCDF=
539    
540  MODS=  MODS=
541  TOOLSDIR=  TOOLSDIR=
542  SOURCEDIRS=  SOURCEDIRS=
543  INCLUDEDIRS=  INCLUDEDIRS=
544  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
545    
546  PWD=`pwd`  PWD=`pwd`
547  MAKE=make  MAKE=make
# Line 473  TAMC_EXTRA= Line 574  TAMC_EXTRA=
574    
575    
576  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
577  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
578  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
579    
580  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
581  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
# Line 491  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 592  gm_s12="TAF_EXTRA TAMC_EXTRA"
592  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
593  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
594    
595    cat <<EOF
596    
597    GENMAKE :
598    
599    A program for GENerating MAKEfiles for the MITgcm project.  For a
600    quick list of options, use "genmake -h" or for more detail see:
601    
602      http://mitgcm.org/devel_HOWTO/
603    
604    EOF
605    
 echo  
606  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
607  gm_local="genmake_local"  gm_local="genmake_local"
608  for i in . $MODS ; do  for i in . $MODS ; do
# Line 546  for ac_option ; do Line 656  for ac_option ; do
656          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
657              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
658                    
659          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
660              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
661          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
662              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 571  for ac_option ; do Line 681  for ac_option ; do
681          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
682              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
683                    
684          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
685              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
686          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
687              PLATFORM=$ac_optarg ;;              echo
688                usage
689                ;;
690                    
691          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
692              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 601  for ac_option ; do Line 713  for ac_option ; do
713          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
714              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
715    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
716  #           -cpp | --cpp)  #           -cpp | --cpp)
717  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
718  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 620  for ac_option ; do Line 727  for ac_option ; do
727              IEEE=true ;;              IEEE=true ;;
728          -noieee | --noieee)          -noieee | --noieee)
729              IEEE= ;;              IEEE= ;;
730            
731          -mpi | --mpi)          -mpi | --mpi)
732              MPI=true ;;              MPI=true ;;
733          -nompi | --nompi)          -mpi=* | --mpi=*)
734              MPI= ;;              MPIPATH=$ac_optarg
735                MPI=true ;;
736                    
737          -jam | --jam)  #       -jam | --jam)
738              JAM=1 ;;  #           JAM=1 ;;
739          -nojam | --nojam)  #       -nojam | --nojam)
740              JAM=0 ;;  #           JAM=0 ;;
741                    
742          -ds | --ds)          -ds | --ds)
743              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 766  fi Line 874  fi
874  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
875      LINK=$FC      LINK=$FC
876  fi  fi
 if test "x$CPP" = x ; then  
     CPP="cpp"  
 fi  
877  if test "x$MAKE" = x ; then  if test "x$MAKE" = x ; then
878      MAKE="make"      MAKE="make"
879  fi  fi
880    if test "x$CPP" = x ; then
881        CPP=cpp
882    fi
883    #EH3 === UGLY ===
884    #  The following an ugly little hack to check for $CPP in /lib/ and it
885    #  should eventually be replaced with a more general function that
886    #  searches a combo of the user's path and a list of "usual suspects"
887    #  to find the correct location for binaries such as $CPP.
888    for i in " " "/lib/" ; do
889        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
890    done
891    #EH3 === UGLY ===
892  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
893  RETVAL=$?  RETVAL=$?
894  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 808  EOF Line 925  EOF
925  fi  fi
926  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
927    
928    if test ! "x$MPI" = x ; then
929          echo "  Turning on MPI cpp macros"
930          DEFINES="$DEFINS -DALLOW_USE_MPI -DALWAYS_USE_MPI"
931    fi
932    
933  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
934  echo -n "  Do we have the system() command using $FC...  "  echo -n "  Do we have the system() command using $FC...  "
# Line 856  if test "x$HAVE_CLOC" != x ; then Line 977  if test "x$HAVE_CLOC" != x ; then
977  else  else
978      echo "no"      echo "no"
979  fi  fi
 echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template  
 cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  
 RETVAL=$?  
 if test "x$RETVAL" != x0 ; then  
     mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h  
 fi  
980  rm -f genmake_t*  rm -f genmake_t*
981    
982    echo -n "  Can we create NetCDF-enabled binaries...  "
983    check_netcdf_libs
984    if test "x$HAVE_NETCDF" != x ; then
985        echo "yes"
986    else
987        echo "no"
988    fi
989    
990    
991  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
992  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
# Line 903  if test "x${TOOLSDIR}" = x ; then Line 1026  if test "x${TOOLSDIR}" = x ; then
1026      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1027  fi  fi
1028  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1029      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1030      exit 1      exit 1
1031  fi  fi
1032  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1033      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1034  fi  fi
1035    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1036    
1037  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1038    
# Line 923  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1047  if test -r $ROOTDIR"/eesupp/src/Makefile
1047          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1048      else      else
1049          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1050          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1051          exit 1          exit 1
1052      fi      fi
1053  fi  fi
1054    
1055    #same for exch2
1056    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1057        echo "  Making source files in exch2 from  templates"
1058        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1059        RETVAL=$?
1060        if test "x${RETVAL}" = x0 ; then
1061            rm -f make_exch2.errors
1062        else
1063            echo "Error: problem encountered while building source files in exch2:"
1064            cat make_exch2.errors 1>&2
1065            exit 1
1066        fi
1067    fi
1068    
1069  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1070  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1071      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 960  rm -f ./.pd_tmp Line 1098  rm -f ./.pd_tmp
1098  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1099  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1100  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1101  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1102  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1103      for i in "." $MODS ; do      for i in "." $MODS ; do
1104          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 973  if test "x${PDEFAULT}" = x ; then Line 1111  if test "x${PDEFAULT}" = x ; then
1111      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1112  fi  fi
1113  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1114      echo "default packages file disabled"      echo "    default packages file disabled"
1115  else  else
1116      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1117          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1118      else      else
1119          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1120          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1121          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1122          RETVAL=$?          RETVAL=$?
# Line 1112  for i in $PACKAGES ; do Line 1249  for i in $PACKAGES ; do
1249      fi      fi
1250  done  done
1251    
1252    #  Build MNC templates and check for ability to build and use NetCDF
1253    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1254    RETVAL=$?
1255    if test "x$RETVAL" = x0 ; then
1256        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1257        RETVAL=$?
1258        if test "x${RETVAL}" = x0 ; then
1259            rm -f make_mnc.errors
1260        else
1261            echo "Error: problem encountered while building source files in pkg/mnc:"
1262            cat make_mnc.errors 1>&2
1263            exit 1
1264        fi
1265        if test "x$HAVE_NETCDF" != xt ; then
1266            cat <<EOF
1267    
1268  # Create a list of #define and #undef to enable/disable packages  WARNING: the "mnc" package has been enabled but tests failed to
1269  PACKAGES_DOT_H=PACKAGES_CONFIG.h    compile and/or execute NetCDF applications.  Please check that:
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
1270    
1271  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1272      2) the LIBS variable (within the 'optfile") specifies the correct
1273           NetCDF library to link against.
1274      
1275  EOF  EOF
1276        fi
1277    fi
1278    
1279    # Create a list of #define and #undef to enable/disable packages
1280    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1281  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1282  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1283  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1284  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1285  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1286  all_pack=  all_pack=
1287    DISABLED_PACKAGES=
1288  for n in $names ; do  for n in $names ; do
1289      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1290          has_pack="f"          has_pack="f"
# Line 1144  for n in $names ; do Line 1296  for n in $names ; do
1296          done          done
1297          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1298              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1299              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1300          fi          fi
1301      fi      fi
1302  done  done
1303  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1304  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1305      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1306      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1307  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1308    
1309  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1310      case $i in      case $i in
1311          aim_v23)          aim_v23)
1312              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1313              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1314              ;;              ;;
1315      esac      esac
1316  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1317    
1318  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1319    
1320  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1321  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1322  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1323      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1324  fi  fi
1325  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1326      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1327      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1328          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1329          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1330          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1331      else              exit 1
1332          SOURCEDIRS="$SOURCEDIRS $adr"          else
1333      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1334      adr="$ROOTDIR/$d/inc"          fi
1335      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1336          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1337          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1338          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1339      else              exit 1
1340          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1341      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1342  done          fi
1343        done
1344    fi
1345    
1346  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1347  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1348  CPP_OPTIONS=  CPP_OPTIONS=
1349    CPP_EEOPTIONS=
1350  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1351    names=`ls -1 "$ROOTDIR/pkg"`
1352  for i in $spaths ; do  for i in $spaths ; do
1353      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1354      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1355          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1356          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1357          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1358            for n in $names ; do
1359                test_for_package_in_cpp_options $CPP_OPTIONS $n
1360            done
1361        fi
1362        try="$i/CPP_EEOPTIONS.h"
1363        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1364            echo "    found CPP_EEOPTIONS=\"$try\""
1365            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1366    #**** not yet enabled ****
1367    #        test_for_mpi_in_cpp_eeoptions $try
1368    #**** not yet enabled ****
1369            CPP_EEOPTIONS="$try"
1370      fi      fi
1371  done  done
1372  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1373      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1374      exit 1      exit 1
1375  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1376    
1377  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1378  #  compiler.  #  compiler.
# Line 1247  for i in $SOURCEDIRS ; do Line 1387  for i in $SOURCEDIRS ; do
1387      done      done
1388  done  done
1389    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1390    
1391  echo  echo
1392  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1288  for d in $alldirs ; do Line 1417  for d in $alldirs ; do
1417      for sf in $sfiles ; do      for sf in $sfiles ; do
1418          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1419              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1420                    case $d/$sf in
1421                      ./$PACKAGES_DOT_H)
1422                            ;;
1423                      ./AD_CONFIG.h)
1424                            ;;
1425                      ./FC_NAMEMANGLE.h)
1426                            ;;
1427                      *)
1428                            touch .links.tmp/$sf
1429                            deplist="$deplist $sf"
1430                            ;;
1431                    esac
1432                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1433                  case $extn in                  case $extn in
1434                      F)                      F)
1435                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 1348  EXE_FTL=$EXECUTABLE"_ftl" Line 1487  EXE_FTL=$EXECUTABLE"_ftl"
1487  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1488    
1489  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1490    #
1491    # OPTFILE="$OPTFILE"
1492  #  #
1493  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1494  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1381  EXE_AD      = ${EXE_AD} Line 1522  EXE_AD      = ${EXE_AD}
1522  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1523  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1524    
1525    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1526    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1527    
1528    # These files are created by Makefile
1529    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1530    
1531  EOF  EOF
1532    
1533  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1445  cat >>$MAKEFILE <<EOF Line 1592  cat >>$MAKEFILE <<EOF
1592  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1593    
1594  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1595  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1596            @echo Creating \$@ ...
1597          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1598  depend:  depend:
1599          @make links          @make links
1600          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1601          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1602    
1603  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1604    
1605  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1606    
# Line 1461  output.txt: \$(EXECUTABLE) Line 1609  output.txt: \$(EXECUTABLE)
1609          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1610    
1611  clean:  clean:
1612          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
1613  Clean:  Clean:
1614          @make clean          @make clean
1615          @make cleanlinks          @make cleanlinks
1616          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
1617            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1618  CLEAN:  CLEAN:
1619          @make Clean          @make Clean
1620          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1476  CLEAN: Line 1624  CLEAN:
1624    
1625  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1626  makefile:  makefile:
1627          ${0} $@          $THIS_SCRIPT $@
1628  cleanlinks:  cleanlinks:
1629          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1630    
1631    # Special targets ($SPECIAL_FILES) which are create by make
1632    ${PACKAGES_DOT_H}:
1633            @echo Creating \$@ ...
1634            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1635    AD_CONFIG.h:
1636            @echo Creating \$@ ...
1637            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1638    FC_NAMEMANGLE.h:
1639            @echo Creating \$@ ...
1640            echo "$FC_NAMEMANGLE" > \$@
1641    
1642  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1643  .F.f:  .F.f:
1644          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1539  adtaf: ad_taf_output.f Line 1698  adtaf: ad_taf_output.f
1698  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1699    
1700  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1701            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1702          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1703            -rm -f ad_config.template
1704          @make \$(F77FILES)          @make \$(F77FILES)
1705          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1706          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1707    
1708  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1709          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1710          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1711    
1712  adtafonly:  adtafonly:
1713          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1714          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1715    
1716  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1717          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1718    
1719  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1720          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1721          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1722    
1723  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1724          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
# Line 1569  ftltaf: ftl_taf_output.f Line 1730  ftltaf: ftl_taf_output.f
1730  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1731    
1732  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1733            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1734          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1735            -rm -f ftl_config.template
1736          @make \$(F77FILES)          @make \$(F77FILES)
1737          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1738          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1739    
1740  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
1741          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1742          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1743    
1744    ftltafonly:
1745            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1746            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1747    
1748  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1749          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1750    
1751  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1752          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1753          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1754    
1755  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1756          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1757    
1758    
1759  # ... SVD ...  # ... SVD ...
1760  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
1761  svd_taf_f: svd_taf_output.f  svdall: svd_taf
   
 svd_input_code.f: \$(SRCFILES)  
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
1762    
1763  svd_taf_output.f: svd_input_code.f  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1764          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
   
 svd_taf: svd_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
1765    
1766    
1767  #=========================================  #=========================================
# Line 1645  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1802  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1802    
1803  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1804    
1805  #  Write the "template" files for the adjoint builds  # Create special header files
1806  cat >AD_CONFIG.template <<EOF  $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1807  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
1808  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1809  C    unless you are CERTAIN that you know what you are doing.  else
1810        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1811  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
1812  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
1813  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
1814  EOF      else
1815  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1816  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1817  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
1818  C    unless you are CERTAIN that you know what you are doing.  fi
1819    if test ! -f AD_CONFIG.h ; then
1820  #define ALLOW_ADJOINT_RUN      $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1821  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
1822    
1823    
1824  #  Write the "state" for future records  #  Write the "state" for future records

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