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revision 1.37 by heimbach, Fri Nov 14 05:25:46 2003 UTC revision 1.74 by adcroft, Wed Mar 24 17:12:51 2004 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
# Line 73  find_possible_configs()  { Line 79  find_possible_configs()  {
79      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
80      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
81      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
82      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
83        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
84        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
85        PLATFORM=$tmp3
86      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
87      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
88            
89      echo "test" > test      echo "test" > test
90      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 102  find_possible_configs()  {
102          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
103      fi      fi
104    
105      # makedepend is not always available      #  The "original" makedepend is part of the Imake system that is
106        #  most often distributed with XFree86 or with an XFree86 source
107        #  package.  As a result, many machines (eg. generic Linux) do not
108        #  have a system-default "makedepend" available.  For those
109        #  systems, we have two fall-back options:
110        #
111        #    1) a makedepend implementation shipped with the cyrus-imapd
112        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
113        #
114        #    2) a known-buggy xmakedpend shell script
115        #
116        #  So the choices are, in order:
117        #
118        #    1) use the user-specified program
119        #    2) use a system-wide default
120        #    3) locally build and use the cyrus implementation
121        #    4) fall back to the buggy local xmakedpend script
122        #
123      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
124        which makedepend >& /dev/null        which makedepend > /dev/null 2>&1
125        RETVAL=$?        RETVAL=$?
126        if test "x${RETVAL}" = x1 ; then        if test ! "x${RETVAL}" = x0 ; then
127           echo "    makedepend was not found. Using xmakedpend instead."           echo "    a system-default makedepend was not found."
128           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'  
129             #  Try to build the cyrus impl
130             rm -f ./genmake_cy_md
131             (
132                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
133                     &&  ./configure > /dev/null 2>&1  \
134                     &&  make > /dev/null 2>&1  \
135                     &&  ./makedepend ifparser.c > /dev/null 2>&1  \
136                     &&  echo "true"
137             ) > ./genmake_cy_md
138             grep true ./genmake_cy_md > /dev/null 2>&1
139             RETVAL=$?
140             if test "x$RETVAL" = x0 ; then
141                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
142             else
143                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
144             fi
145             rm -f ./genmake_cy_md
146        fi        fi
147      fi      fi
148    
# Line 149  EOF Line 181  EOF
181          echo "   "$p_FC          echo "   "$p_FC
182          if test "x$FC" = x ; then          if test "x$FC" = x ; then
183              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
184                echo "  Setting FORTRAN compiler to: "$FC
185          fi          fi
186      fi      fi
187    
188      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
189          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
190          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
191              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
192              echo "  The options file:  $p_OF"          fi
193              echo "    appears to match so we'll use it."      fi
194              break  #    echo "  The options file:  $p_OF"
195          fi  #    echo "    appears to match so we'll use it."
196      done  #   for i in $p_FC ; do
197    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
198    #if test -r $p_OF ; then
199    #    OPTFILE=$p_OF
200    #    echo "  The options file:  $p_OF"
201    #    echo "    appears to match so we'll use it."
202    #    break
203    #fi
204    #   done
205      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
206          cat 1>&2 <<EOF          cat 1>&2 <<EOF
207    
# Line 219  get_pdepend_list()  { Line 260  get_pdepend_list()  {
260      . ./.pd_tmp      . ./.pd_tmp
261      rm -f ./.pd_tmp      rm -f ./.pd_tmp
262    
263      echo -n "PNAME = "${}      printf "PNAME = "${}
264  }  }
265    
266    
267  #  Explain usage  #  Explain usage
268  usage()  {  usage()  {
269      echo  cat <<EOF
270      echo "Usage: "$0" [OPTIONS]"  
271      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
272      echo    where [OPTIONS] can be:
273      echo "    -help | --help | -h | --h"  
274      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
275      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
276      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
277      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
278      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
279      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
280      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
281      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
282      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
283      echo "    -makefile NAME | -mf NAME"  
284      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
285      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
286      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
287      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
288      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
289      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
290      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
291      echo "    -disable NAME | --disable NAME"  
292      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
293      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
294      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
295      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
296      echo "      -standarddirs=NAME | --standarddirs=NAME"  
297      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
298      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
299  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
300  #    echo "      -cpp=NAME | --cpp=NAME"  
301      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -makedepend NAME | -md NAME
302      echo "      -fc=NAME | --fc=NAME"        --makedepend=NAME | -md=NAME
303      echo "    -[no]ieee | --[no]ieee"            Use "NAME" for the MAKEDEPEND program.
304      echo "    -[no]mpi | --[no]mpi"  
305      echo "    -[no]jam | --[no]jam"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
306      echo        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
307      echo "  and NAME is a string such as:"            Specify the location of the MITgcm ROOTDIR as "NAME".
308      echo            By default, genamke will try to find the location by
309      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            looking in parent directories (up to the 5th parent).
310      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
311      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
312      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
313      echo "  which, depending upon your shell, may need to be single-quoted"            Here, "NAME" specifies a list of directories that are
314      echo "  if it contains spaces, dashes, or other special characters."            used for additional source code.  Files found in the
315              "mods list" are given preference over files of the same
316              name found elsewhere.
317    
318        -disable NAME | --disable NAME
319          -disable=NAME | --disable=NAME
320              Here "NAME" specifies a list of packages that we don't
321              want to use.  If this violates package dependencies,
322              genamke will exit with an error message.
323    
324        -enable NAME | --enable NAME
325          -enable=NAME | --enable=NAME
326              Here "NAME" specifies a list of packages that we wish
327              to specifically enable.  If this violates package
328              dependencies, genamke will exit with an error message.
329    
330        -standarddirs NAME | --standarddirs NAME
331          -standarddirs=NAME | --standarddirs=NAME
332              Here, "NAME" specifies a list of directories to be
333              used as the "standard" code.
334    
335        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
336          -fc=NAME | --fc=NAME
337              Use "NAME" as the fortran compiler.  By default, genmake
338              will search for a working compiler by trying a list of
339              "usual suspects" such as g77, f77, etc.
340    
341        -[no]ieee | --[no]ieee
342              Do or don't use IEEE numerics.  Note that this option
343              *only* works if it is supported by the OPTFILE that
344              is being used.
345    
346        -mpi | --mpi
347              Include MPI header files and link to MPI libraries
348        -mpi=PATH | --mpi=PATH
349              Include MPI header files and link to MPI libraries using MPI_ROOT
350              set to PATH. i.e. Include files from $PATH/include, link to libraries
351              from $PATH/lib and use binaries from $PATH/bin.
352    
353        -bash NAME
354              Explicitly specify the Bourne or BASH shell to use
355    
356      While it is most often a single word, the "NAME" variables specified
357      above can in many cases be a space-delimited string such as:
358    
359        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
360        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
361        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
362    
363      which, depending upon your shell, may need to be single-quoted.
364    
365      For more detailed genmake documentation, please see:
366    
367        http://mitgcm.org/devel_HOWTO/
368    
369    EOF
370    
371      exit 1      exit 1
372  }  }
373    
# Line 281  get_fortran_c_namemangling()  { Line 378  get_fortran_c_namemangling()  {
378      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
379  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
380  EOF  EOF
381      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
382      RETVAL=$?      RETVAL=$?
383      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
384          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
385          echo          cat <<EOF>> genmake_errors
386          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
387          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
388          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
389    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
390    EOF
391          return 1          return 1
392      fi      fi
393      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
394      RETVAL=$?      RETVAL=$?
395      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
396          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
397          echo          cat <<EOF>> genmake_warnings
398          echo "WARNING: The \"nm\" command failed."  
399          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
400          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
401    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
402    EOF
403          return 1          return 1
404      fi      fi
405      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.f <<EOF
# Line 308  EOF Line 408  EOF
408        call tsub( string )        call tsub( string )
409        end        end
410  EOF  EOF
411      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
412      RETVAL=$?      RETVAL=$?
413      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
414          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
415          echo          cat <<EOF>> genmake_warnings
416          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
417          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
418          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
419    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
420    EOF
421          return 1          return 1
422      fi      fi
423      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
424      RETVAL=$?      RETVAL=$?
425      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
426          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
427          echo          cat <<EOF>> genmake_warnings
428          echo "WARNING: The \"nm\" command failed."  
429          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
430          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
431    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
432    EOF
433          return 1          return 1
434      fi      fi
435    
# Line 353  EOF Line 456  EOF
456      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
457  }  }
458    
459    
460    check_HAVE_CLOC()  {
461        get_fortran_c_namemangling
462        cat <<EOF > genmake_tc_1.c
463    $FC_NAMEMANGLE
464    #include <stdio.h>
465    #include <stdlib.h>
466    #include <unistd.h>
467    #include <assert.h>
468    #include <sys/time.h>
469    void FC_NAMEMANGLE(cloc) ( double *curtim )
470    {
471     struct timeval tv1;
472     gettimeofday(&tv1 , (void *)NULL );
473     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
474     *curtim = *curtim/1.E6;
475    }
476    EOF
477        make genmake_tc_1.o >> genmake_tc.log 2>&1
478        RET_C=$?
479        cat <<EOF > genmake_tc_2.f
480          program hello
481          Real*8 wtime
482          external cloc
483          call cloc(wtime)
484          print *," HELLO WORLD", wtime
485          end program hello
486    EOF
487        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
488        RET_F=$?
489        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
490        RETVAL=$?
491        if test "x$RETVAL" = x0 ; then
492            HAVE_CLOC=t
493            DEFINES="$DEFINES -DHAVE_CLOC"
494        fi
495        rm -f genmake_tc*
496    }
497    
498    
499    check_netcdf_libs()  {
500        cat <<EOF > genmake_tnc.F
501          program fgennc
502    #include "netcdf.inc"
503          integer iret, ncid, xid
504          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
505          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
506          iret = nf_def_dim(ncid, 'X', 11, xid)
507          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
508          iret = nf_close(ncid)
509          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
510          end
511    EOF
512        $CPP genmake_tnc.F > genmake_tnc.f  \
513            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
514        RET_COMPILE=$?
515        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
516        RETVAL=$?
517        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
518            HAVE_NETCDF=t
519        else
520            # try again with "-lnetcdf" added to the libs
521            $CPP genmake_tnc.F > genmake_tnc.f  \
522                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
523                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
524            RET_COMPILE=$?
525            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
526            RETVAL=$?
527            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
528                LIBS="$LIBS -lnetcdf"
529                HAVE_NETCDF=t
530            else
531                cat genmake_tnc.log >> genmake_warnings
532            fi
533        fi
534        rm -f genmake_tnc*
535    }
536    
537    
538    
539    ###############################################################################
540    #   Sequential part of script starts here
541    ###############################################################################
542    
543  #  Set defaults here  #  Set defaults here
544  COMMANDL="$0 $@"  COMMANDL="$0 $@"
545    
# Line 361  LN= Line 548  LN=
548  S64=  S64=
549  KPP=  KPP=
550  FC=  FC=
551    CPP=
552  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
553  DEFINES=  DEFINES=
554  PACKAGES=  PACKAGES=
555  ENABLE=  ENABLE=
# Line 379  FOPTIM= Line 566  FOPTIM=
566  CFLAGS=  CFLAGS=
567  KFLAGS1=  KFLAGS1=
568  KFLAGS2=  KFLAGS2=
569    #LDADD=
570  LIBS=  LIBS=
571  KPPFILES=  KPPFILES=
572  NOOPTFILES=  NOOPTFILES=
573  NOOPTFLAGS=  NOOPTFLAGS=
574    MPI=
575    MPIPATH=
576    
577  # DEFINES checked by test compilation  # DEFINES checked by test compilation
578  HAVE_SYSTEM=  HAVE_SYSTEM=
579  HAVE_FDATE=  HAVE_FDATE=
580  FC_NAMEMANGLE=  FC_NAMEMANGLE=
581    HAVE_CLOC=
582    HAVE_NETCDF=
583    
584  MODS=  MODS=
585  TOOLSDIR=  TOOLSDIR=
586  SOURCEDIRS=  SOURCEDIRS=
587  INCLUDEDIRS=  INCLUDEDIRS=
588  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
589    
590    G2ARGS=
591    BASH=
592  PWD=`pwd`  PWD=`pwd`
593  MAKE=make  MAKE=make
594  AWK=awk  AWK=awk
# Line 426  TAMC_EXTRA= Line 620  TAMC_EXTRA=
620    
621    
622  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
623  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
624  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
625    
626  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
627  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
# Line 444  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 638  gm_s12="TAF_EXTRA TAMC_EXTRA"
638  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
639  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
640    
641    cat <<EOF
642    
643    GENMAKE :
644    
645    A program for GENerating MAKEfiles for the MITgcm project.  For a
646    quick list of options, use "genmake -h" or for more detail see:
647    
648      http://mitgcm.org/devel_HOWTO/
649    
650    EOF
651    
 echo  
652  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
653  gm_local="genmake_local"  gm_local="genmake_local"
654  for i in . $MODS ; do  for i in . $MODS ; do
# Line 454  for i in . $MODS ; do Line 657  for i in . $MODS ; do
657          break          break
658      fi      fi
659  done  done
660  echo -n "  getting local config information:  "  printf "  getting local config information:  "
661  if test -e $gm_local ; then  if test -e $gm_local ; then
662      echo "using $gm_local"      echo "using $gm_local"
663      . $gm_local      . $gm_local
# Line 478  fi Line 681  fi
681  ac_prev=  ac_prev=
682  for ac_option ; do  for ac_option ; do
683    
684        G2ARGS="$G2ARGS \"$ac_option\""
685    
686      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
687      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
688          eval "$ac_prev=\$ac_option"          eval "$ac_prev=\$ac_option"
# Line 499  for ac_option ; do Line 704  for ac_option ; do
704          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
705              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
706                    
707          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
708              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
709          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
710              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 519  for ac_option ; do Line 724  for ac_option ; do
724          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
725              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
726                    
727            -bash | --bash)
728                ac_prev=BASH ;;
729            -bash=* | --bash=*)
730                BASH=$ac_optarg ;;
731            
732            -makedepend | --makedepend | -md | --md)
733                ac_prev=MAKEDEPEND ;;
734            -makedepend=* | --makedepend=* | -md=* | --md=*)
735                MAKEDEPEND=$ac_optarg ;;
736            
737          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
738              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
739          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
740              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
741                    
742          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
743              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
744          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
745              PLATFORM=$ac_optarg ;;              echo
746                usage
747                ;;
748                    
749          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
750              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 554  for ac_option ; do Line 771  for ac_option ; do
771          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
772              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
773    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
774  #           -cpp | --cpp)  #           -cpp | --cpp)
775  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
776  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 573  for ac_option ; do Line 785  for ac_option ; do
785              IEEE=true ;;              IEEE=true ;;
786          -noieee | --noieee)          -noieee | --noieee)
787              IEEE= ;;              IEEE= ;;
788            
789          -mpi | --mpi)          -mpi | --mpi)
790              MPI=true ;;              MPI=true ;;
791          -nompi | --nompi)          -mpi=* | --mpi=*)
792              MPI= ;;              MPIPATH=$ac_optarg
793                MPI=true ;;
794                    
795          -jam | --jam)  #       -jam | --jam)
796              JAM=1 ;;  #           JAM=1 ;;
797          -nojam | --nojam)  #       -nojam | --nojam)
798              JAM=0 ;;  #           JAM=0 ;;
799                    
800          -ds | --ds)          -ds | --ds)
801              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 630  if test "x${ROOTDIR}" = x ; then Line 843  if test "x${ROOTDIR}" = x ; then
843          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
844              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
845                  ROOTDIR=$d                  ROOTDIR=$d
846                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
847                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
848                  break                  break
849              fi              fi
# Line 664  if test "x$OPTFILE" != xNONE ; then Line 877  if test "x$OPTFILE" != xNONE ; then
877          . "$OPTFILE"          . "$OPTFILE"
878          RETVAL=$?          RETVAL=$?
879          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
880              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
881              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
882              exit 1              exit 1
883          fi          fi
# Line 691  if test "x${AD_OPTFILE}" != xNONE ; then Line 904  if test "x${AD_OPTFILE}" != xNONE ; then
904          . "$AD_OPTFILE"          . "$AD_OPTFILE"
905          RETVAL=$?          RETVAL=$?
906          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
907              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
908              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
909              exit 1              exit 1
910          fi          fi
# Line 704  if test "x${AD_OPTFILE}" != xNONE ; then Line 917  if test "x${AD_OPTFILE}" != xNONE ; then
917      fi      fi
918  fi  fi
919    
920  #  Check that FC, LINK, CPP, S64, and LN are defined.  If not,  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
921  #  complain and abort!  #  either set defaults or complain and abort!
922    if test ! "x$BASH" = x ; then
923        # add a trailing space so that it works within the Makefile syntax (see below)
924        BASH="$BASH "
925    fi
926  if test "x$FC" = x ; then  if test "x$FC" = x ; then
927      cat <<EOF 1>&2      cat <<EOF 1>&2
928    
# Line 719  fi Line 936  fi
936  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
937      LINK=$FC      LINK=$FC
938  fi  fi
939    if test "x$MAKE" = x ; then
940        MAKE="make"
941    fi
942  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
943      CPP="cpp"      CPP=cpp
944  fi  fi
945    #EH3 === UGLY ===
946    #  The following an ugly little hack to check for $CPP in /lib/ and it
947    #  should eventually be replaced with a more general function that
948    #  searches a combo of the user's path and a list of "usual suspects"
949    #  to find the correct location for binaries such as $CPP.
950    for i in " " "/lib/" ; do
951        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
952    done
953    #EH3 === UGLY ===
954  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
955  RETVAL=$?  RETVAL=$?
956  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 758  EOF Line 987  EOF
987  fi  fi
988  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
989    
990    if test ! "x$MPI" = x ; then
991          echo "  Turning on MPI cpp macros"
992          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
993    fi
994    
995  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
996  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
997  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
998        program hello        program hello
999        call system('echo hi')        call system('echo hi')
# Line 777  else Line 1011  else
1011  fi  fi
1012  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1013    
1014  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1015  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1016        program hello        program hello
1017        CHARACTER(128) string        CHARACTER(128) string
# Line 798  else Line 1032  else
1032  fi  fi
1033  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1034    
1035  echo "  The name mangling convention for $FC is...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1036  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  check_HAVE_CLOC
1037  if test "x$FC_NAMEMANGLE" = x ; then  if test "x$HAVE_CLOC" != x ; then
1038      get_fortran_c_namemangling      echo "yes"
1039    else
1040        echo "no"
1041  fi  fi
1042  echo "    '$FC_NAMEMANGLE'"  rm -f genmake_t*
1043  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template  
1044  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  printf "  Can we create NetCDF-enabled binaries...  "
1045  RETVAL=$?  check_netcdf_libs
1046  if test "x$RETVAL" != x0 ; then  if test "x$HAVE_NETCDF" != x ; then
1047      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      echo "yes"
1048    else
1049        echo "no"
1050  fi  fi
1051    
1052    
1053  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1054  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1055  for d in $MODS ; do  for d in $MODS ; do
1056      if test ! -d $d ; then      if test ! -d $d ; then
1057          echo          echo
1058          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1059          exit 1          exit 1
1060      else      else
1061          echo -n " $d"          printf " $d"
1062          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1063          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1064      fi      fi
# Line 850  if test "x${TOOLSDIR}" = x ; then Line 1088  if test "x${TOOLSDIR}" = x ; then
1088      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1089  fi  fi
1090  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1091      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1092      exit 1      exit 1
1093  fi  fi
1094  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1095      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1096  fi  fi
1097    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1098    
1099  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1100    
# Line 870  if test -r $ROOTDIR"/eesupp/src/Makefile Line 1109  if test -r $ROOTDIR"/eesupp/src/Makefile
1109          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1110      else      else
1111          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1112          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1113          exit 1          exit 1
1114      fi      fi
1115  fi  fi
1116    
1117    #same for exch2
1118    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1119        echo "  Making source files in exch2 from  templates"
1120        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1121        RETVAL=$?
1122        if test "x${RETVAL}" = x0 ; then
1123            rm -f make_exch2.errors
1124        else
1125            echo "Error: problem encountered while building source files in exch2:"
1126            cat make_exch2.errors 1>&2
1127            exit 1
1128        fi
1129    fi
1130    
1131  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1132  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1133      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 907  rm -f ./.pd_tmp Line 1160  rm -f ./.pd_tmp
1160  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1161  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1162  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1163  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1164  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1165      for i in "." $MODS ; do      for i in "." $MODS ; do
1166          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 920  if test "x${PDEFAULT}" = x ; then Line 1173  if test "x${PDEFAULT}" = x ; then
1173      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1174  fi  fi
1175  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1176      echo "default packages file disabled"      echo "    default packages file disabled"
1177  else  else
1178      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1179          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1180      else      else
1181          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1182          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1183          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1184          RETVAL=$?          RETVAL=$?
1185          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1186              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1187              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1188              exit 1              exit 1
1189          fi          fi
# Line 939  else Line 1191  else
1191              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1192          done          done
1193          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1194          expand_pkg_groups          while ! expand_pkg_groups; do echo > /dev/null; done
1195          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1196      fi      fi
1197  fi  fi
1198    
1199  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1200    for i in $PACKAGES ; do
1201        echo $i >> ./.tmp_pack
1202    done
1203    for i in `grep  "-" ./.tmp_pack` ; do
1204        j=`echo $i | sed 's/[-]//'`
1205        DISABLE="$DISABLE $j"
1206    done
1207  pack=  pack=
1208  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1209      addit="t"      addit="t"
# Line 961  PACKAGES="$pack" Line 1220  PACKAGES="$pack"
1220  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1221  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1222  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1223    # Test if each explicitly referenced package exists
1224  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1225      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1226        if test ! -d "$ROOTDIR/pkg/$j" ; then
1227          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1228          exit 1          exit 1
1229      fi      fi
1230      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1231  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1232  PACKAGES=  PACKAGES=
1233  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1234      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1235  done  done
1236    rm -f ./.tmp_pack
1237  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1238    
1239  echo "  applying package dependency rules"  echo "  applying package dependency rules"
# Line 1059  for i in $PACKAGES ; do Line 1319  for i in $PACKAGES ; do
1319      fi      fi
1320  done  done
1321    
1322    #  Build MNC templates and check for ability to build and use NetCDF
1323    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1324    RETVAL=$?
1325    if test "x$RETVAL" = x0 ; then
1326        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1327        RETVAL=$?
1328        if test "x${RETVAL}" = x0 ; then
1329            rm -f make_mnc.errors
1330        else
1331            echo "Error: problem encountered while building source files in pkg/mnc:"
1332            cat make_mnc.errors 1>&2
1333            exit 1
1334        fi
1335        if test "x$HAVE_NETCDF" != xt ; then
1336            cat <<EOF
1337    
1338  # Create a list of #define and #undef to enable/disable packages  WARNING: the "mnc" package has been enabled but tests failed to
1339  PACKAGES_DOT_H=PACKAGES_CONFIG.h    compile and/or execute NetCDF applications.  Please check that:
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
1340    
1341  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1342      2) the LIBS variable (within the 'optfile") specifies the correct
1343           NetCDF library to link against.
1344      
1345  EOF  EOF
1346        fi
1347    fi
1348    
1349    # Create a list of #define and #undef to enable/disable packages
1350    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1351  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1352  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1353  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1354  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1355  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1356  all_pack=  all_pack=
1357    DISABLED_PACKAGES=
1358  for n in $names ; do  for n in $names ; do
1359      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1360          has_pack="f"          has_pack="f"
# Line 1091  for n in $names ; do Line 1366  for n in $names ; do
1366          done          done
1367          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1368              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1369              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1370          fi          fi
1371      fi      fi
1372  done  done
1373  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1374  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1375      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1376      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1377  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1378    
1379  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1380      case $i in      case $i in
1381          aim_v23)          aim_v23)
1382              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1383              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1384              ;;              ;;
1385      esac      esac
1386  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1387    
1388  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1389    
1390  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1391  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1392  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1393      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1394  fi  fi
1395  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1396      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1397      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1398          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1399          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1400          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1401      else              exit 1
1402          SOURCEDIRS="$SOURCEDIRS $adr"          else
1403      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1404      adr="$ROOTDIR/$d/inc"          fi
1405      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1406          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1407          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1408          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1409      else              exit 1
1410          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1411      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1412  done          fi
1413        done
1414    fi
1415    
1416  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1417  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1418  CPP_OPTIONS=  CPP_OPTIONS=
1419    CPP_EEOPTIONS=
1420  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1421    names=`ls -1 "$ROOTDIR/pkg"`
1422  for i in $spaths ; do  for i in $spaths ; do
1423      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1424      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1425          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1426          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1427          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1428            for n in $names ; do
1429                test_for_package_in_cpp_options $CPP_OPTIONS $n
1430            done
1431        fi
1432        try="$i/CPP_EEOPTIONS.h"
1433        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1434            echo "    found CPP_EEOPTIONS=\"$try\""
1435            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1436    #**** not yet enabled ****
1437    #        test_for_mpi_in_cpp_eeoptions $try
1438    #**** not yet enabled ****
1439            CPP_EEOPTIONS="$try"
1440      fi      fi
1441  done  done
1442  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1443      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1444      exit 1      exit 1
1445  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1446    
1447  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1448  #  compiler.  #  compiler.
# Line 1194  for i in $SOURCEDIRS ; do Line 1457  for i in $SOURCEDIRS ; do
1457      done      done
1458  done  done
1459    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1460    
1461  echo  echo
1462  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1222  rm -rf .links.tmp Line 1474  rm -rf .links.tmp
1474  mkdir .links.tmp  mkdir .links.tmp
1475  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1476  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1477  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1478  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1479  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1480  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1481  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1482  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1483  for d in $alldirs ; do  for d in $alldirs ; do
1484      deplist=      deplist=
# Line 1235  for d in $alldirs ; do Line 1487  for d in $alldirs ; do
1487      for sf in $sfiles ; do      for sf in $sfiles ; do
1488          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1489              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1490                    case $d/$sf in
1491                      ./$PACKAGES_DOT_H)
1492                            ;;
1493                      ./AD_CONFIG.h)
1494                            ;;
1495                      ./FC_NAMEMANGLE.h)
1496                            ;;
1497                      *)
1498                            touch .links.tmp/$sf
1499                            deplist="$deplist $sf"
1500                            ;;
1501                    esac
1502                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1503                  case $extn in                  case $extn in
1504                      F)                      F)
1505                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1506                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1507                          ;;                          ;;
1508                      F90)                      F90)
1509                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1510                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1511                          ;;                          ;;
1512                      c)                      c)
1513                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1514                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1515                          ;;                          ;;
1516                      h)                      h)
1517                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1518                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1519                          ;;                          ;;
1520                      flow)                      flow)
1521                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1522                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1523                          ;;                          ;;
1524                  esac                  esac
1525              fi              fi
# Line 1286  echo "#    $MACHINE" >> $MAKEFILE Line 1548  echo "#    $MACHINE" >> $MAKEFILE
1548  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1549  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1550  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1551  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1552  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1553  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1554    
# Line 1295  EXE_FTL=$EXECUTABLE"_ftl" Line 1557  EXE_FTL=$EXECUTABLE"_ftl"
1557  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1558    
1559  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1560    #
1561    # OPTFILE="$OPTFILE"
1562  #  #
1563  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1564  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1328  EXE_AD      = ${EXE_AD} Line 1592  EXE_AD      = ${EXE_AD}
1592  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1593  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1594    
1595    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1596    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1597    
1598    # These files are created by Makefile
1599    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1600    
1601  EOF  EOF
1602    
1603  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1346  FC = ${FC} Line 1616  FC = ${FC}
1616  # Fortran compiler  # Fortran compiler
1617  F90C = ${F90C}  F90C = ${F90C}
1618  # Link editor  # Link editor
1619  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1620    
1621  # Defines for CPP  # Defines for CPP
1622  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1392  cat >>$MAKEFILE <<EOF Line 1662  cat >>$MAKEFILE <<EOF
1662  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1663    
1664  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1665  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1666            @echo Creating \$@ ...
1667          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1668  depend:  depend:
1669          @make links          @make links
1670          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1671          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1672            -rm -f makedepend.out
1673    
1674  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1675    
1676  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1677    
# Line 1408  output.txt: \$(EXECUTABLE) Line 1680  output.txt: \$(EXECUTABLE)
1680          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1681    
1682  clean:  clean:
1683          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
1684  Clean:  Clean:
1685          @make clean          @make clean
1686          @make cleanlinks          @make cleanlinks
1687          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
1688            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1689  CLEAN:  CLEAN:
1690          @make Clean          @make Clean
1691          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1423  CLEAN: Line 1695  CLEAN:
1695    
1696  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1697  makefile:  makefile:
1698          ${0} $@          $THIS_SCRIPT $G2ARGS
1699  cleanlinks:  cleanlinks:
1700          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1701    
1702    # Special targets ($SPECIAL_FILES) which are create by make
1703    ${PACKAGES_DOT_H}:
1704            @echo Creating \$@ ...
1705            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1706    AD_CONFIG.h:
1707            @echo Creating \$@ ...
1708            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1709    FC_NAMEMANGLE.h:
1710            @echo Creating \$@ ...
1711            echo "$FC_NAMEMANGLE" > \$@
1712    
1713  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1714  .F.f:  .F.f:
1715          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1469  done Line 1752  done
1752    
1753  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1754  echo >> $MAKEFILE  echo >> $MAKEFILE
1755  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1756  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1757  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1758      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1759      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1760  done  done
1761  echo >> $MAKEFILE  echo >> $MAKEFILE
1762  rm -f ad_files  rm -f ad_files
# Line 1486  adtaf: ad_taf_output.f Line 1769  adtaf: ad_taf_output.f
1769  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1770    
1771  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1772            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1773          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1774            -rm -f ad_config.template
1775          @make \$(F77FILES)          @make \$(F77FILES)
1776          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1777          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1778    
1779  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1780          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1781          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1782    
1783  adtafonly:  adtafonly:
1784          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1785          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1786    
1787  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1788          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1789    
1790  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1791          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1792          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1793    
1794  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1795          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
# Line 1516  ftltaf: ftl_taf_output.f Line 1801  ftltaf: ftl_taf_output.f
1801  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1802    
1803  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1804            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1805          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1806            -rm -f ftl_config.template
1807          @make \$(F77FILES)          @make \$(F77FILES)
1808          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1809          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1810    
1811  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
1812          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1813          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1814    
1815    ftltafonly:
1816            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1817            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1818    
1819  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1820          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1821    
1822  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1823          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1824          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1825    
1826  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1827          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1828    
1829    
1830  # ... SVD ...  # ... SVD ...
1831  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
1832  svd_taf_f: svd_taf_output.f  svdall: svd_taf
1833    
1834  svd_input_code.f: \$(SRCFILES)  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1835          cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
   
 svd_taf: svd_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
1836    
1837    
1838  #=========================================  #=========================================
# Line 1592  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1873  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1873    
1874  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1875    
1876  #  Write the "template" files for the adjoint builds  # Create special header files
1877  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1878  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
1879  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1880  C    unless you are CERTAIN that you know what you are doing.  else
1881        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1882  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
1883  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
1884  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
1885  EOF      else
1886  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1887  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1888  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
1889  C    unless you are CERTAIN that you know what you are doing.  fi
1890    if test ! -f AD_CONFIG.h ; then
1891  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1892  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
1893    
1894    
1895  #  Write the "state" for future records  #  Write the "state" for future records
1896  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1897      echo -n "" > genmake_state      printf "" > genmake_state
1898      for i in $gm_state ; do      for i in $gm_state ; do
1899          t1="t2=\$$i"          t1="t2=\$$i"
1900          eval $t1          eval $t1

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