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revision 1.36 by edhill, Fri Nov 14 02:48:18 2003 UTC revision 1.233 by jmc, Tue Aug 14 22:10:39 2012 UTC
# Line 1  Line 1 
1  #!/bin/sh  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185      if test "x${RETVAL}" = x0 ; then  }
186          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"  
187          exit 99  # Search for particular CPP #cmds associated with MPI
188      fi  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  test_for_mpi_in_cpp_eeoptions() {
190        cpp_options=$1
191        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199    }
200    
201    # Search for particular string in a file. Return 1 if detected, 0 if not
202    # usage: test_for_string_in_file file string
203    test_for_string_in_file() {
204        file=$1
205        strng=$2
206        grep -i "$strng" $file > /dev/null 2>&1
207      RETVAL=$?      RETVAL=$?
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
210            grep -i "$strng" $file
211          exit 99          exit 99
212      fi      fi
213      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
214  }  }
215    
216  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
217  # the package list.  # the package list.
218  expand_pkg_groups() {  expand_pkg_groups() {
219      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
220      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
221          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 54  expand_pkg_groups() { Line 227  expand_pkg_groups() {
227              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
228                  matched=1                  matched=1
229                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
231                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
232              else              else
233                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 62  expand_pkg_groups() { Line 235  expand_pkg_groups() {
235          done          done
236          PACKAGES=$new_packages          PACKAGES=$new_packages
237          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
238            return $matched
239      else      else
240          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241      fi      fi
242  }  }
243    
244  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246    check_for_broken_Ff()  {
247        #  Do we have defaults for $FS and/or $FS90 ?
248        tfs=f
249        tfs9=f90
250        if test "x$FS" != x ; then
251            tfs="$FS"
252        fi
253        if test "x$FS90" != x ; then
254            tfs9="$FS90"
255        fi
256    
257      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
258      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
259      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
260      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        write(*,*) 'hi'
261      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        stop
262      echo "  The platform appears to be:  $PLATFORM"        end
263  #     if test "x$OFLIST" = x ; then  EOF
264  #       echo "  No pre-defined options files were found matching this platform"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
265      RETVAL=$?      RETVAL=$?
266      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
267          LN="ln -s"          if test "x$FS" = x ; then
268      else              FS='for'
269          echo "Error: \"ln -s\" does not appear to work on this system!"              FS90='fr9'
270          echo "  For help, please contact <MITgcm-support@mitgcm.org>."              check_for_broken_Ff
271          exit 1          else
272                cat <<EOF 2>&1
273    ERROR: Your file system cannot distinguish between *.F and *.f files
274      (fails the "cp" test) and this program cannot find a suitable
275      replacement extension.  Please try a different build environment or
276      contact the <MITgcm-support@mitgcm.org> list for help.
277    
278    EOF
279                exit -1
280            fi
281            return
282      fi      fi
283      rm -f test link      rm -f genmake_hello.*
284    
285        #  Check the ability of ${MAKE} and ${LN} to use the current set
286        #  of extensions.
287        cat <<EOF >> genmake_hello.F
288          program hello
289          write(*,*) 'hi'
290          stop
291          end
292    EOF
293        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
294        cat <<EOF >> $MAKEFILE
295    .SUFFIXES:
296    .SUFFIXES: .$tfs .F
297    .F.$tfs:
298            $LN \$< \$@
299    EOF
300        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
301        RETVAL=$?
302        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303            if test "x$FS" = x ; then
304                FS='for'
305                FS90='fr9'
306                check_for_broken_Ff
307            else
308                cat <<EOF 2>&1
309    ERROR: Your file system cannot distinguish between *.F and *.f files
310      (fails the "make/ln" test) and this program cannot find a suitable
311      replacement extension.  Please try a different build environment or
312      contact the <MITgcm-support@mitgcm.org> list for help.
313    
314      if test "x$CPP" = x ; then  EOF
315          CPP="cpp -traditional -P"              exit -1
316                return
317            fi
318      fi      fi
319        rm -f genmake_hello.* $MAKEFILE
320        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
321    
322      # makedepend is not always available      #  If we make it here, use the extensions
323        FS=$tfs
324        FS90=$tfs9
325        return
326    }
327    
328    look_for_makedepend()  {
329    
330        #  The "original" makedepend is part of the Imake system that is
331        #  most often distributed with XFree86 or with an XFree86 source
332        #  package.  As a result, many machines (eg. generic Linux) do not
333        #  have a system-default "makedepend" available.  For those
334        #  systems, we have two fall-back options:
335        #
336        #    1) a makedepend implementation shipped with the cyrus-imapd
337        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
338        #
339        #    2) a known-buggy xmakedpend shell script
340        #
341        #  So the choices are, in order:
342        #
343        #    1) use the user-specified program
344        #    2) use a system-wide default
345        #    3) locally build and use the cyrus implementation
346        #    4) fall back to the buggy local xmakedpend script
347        #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
370        which makedepend >& /dev/null          which makedepend > /dev/null 2>&1
371        RETVAL=$?          RV0=$?
372        if test "x${RETVAL}" = x1 ; then          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
373           echo "    makedepend was not found. Using xmakedpend instead."          #  echo 'MAKEFILE="'$MAKEFILE'"'
374           MAKEDEPEND='$(TOOLSDIR)/xmakedepend'          cat <<EOF >> $MAKEFILE
375        fi  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376    #
377    #   Some "makedepend" implementations will die if they cannot
378    #   find a Makefile -- so this file is here to gives them an
379    #   empty one to find and parse.
380    EOF
381            cat <<EOF >> genmake_tc.f
382          program test
383          write(*,*) 'test'
384          stop
385          end
386    EOF
387            makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
388            RV1=$?
389            test -f $MAKEFILE  &&  rm -f $MAKEFILE
390            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391            if test "x${RV0}${RV1}" = x00 ; then
392                MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394            else
395                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
396                #  Try to build the cyrus implementation
397                build_cyrus_makedepend
398                RETVAL=$?
399                if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403                fi
404            fi
405      fi      fi
406    }
407    
408      # look for possible fortran compilers  build_cyrus_makedepend()  {
409      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      echo >> $LOGFILE
410      p_FC=      echo "running: build_cyrus_makedepend()" >> $LOGFILE
411        rm -f ./genmake_cy_md
412        (
413            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
414                &&  ./configure > /dev/null 2>&1  \
415                &&  make > /dev/null 2>&1
416            if test -x ./makedepend.exe ; then
417                $LN ./makedepend.exe ./makedepend
418            fi
419            ./makedepend ifparser.c > /dev/null 2>&1  \
420                &&  echo "true"
421        ) > ./genmake_cy_md
422        grep true ./genmake_cy_md > /dev/null 2>&1
423        RETVAL=$?
424        rm -f ./genmake_cy_md
425        if test "x$RETVAL" = x0 ; then
426            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428            return 0
429        else
430            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431            return 1
432        fi
433    }
434    
435    build_embed_encode()
436    {
437        printf "  building the embed-encode utility...  "
438        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
439            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
440                echo
441                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
442                echo
443                EMBED_SRC=f
444                return 1
445            fi
446            clist="cc gcc c89 $CC"
447            for ic in $clist ; do
448                comm="$ic -o encode_files encode_files.c"
449                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450                RETVAL=$?
451                if test "x$RETVAL" = x0 ; then
452                    echo "OK"
453                    return 0
454                fi
455            done
456            echo
457            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
458            echo "      so it has been disabled"
459            echo
460            EMBED_SRC=f
461            return 1
462        fi
463        echo "OK"
464    }
465    
466    #  look for possible C compilers
467    look_for_C_compilers() {
468        echo >> $LOGFILE
469        echo "running: look_for_C_compilers()" >> $LOGFILE
470        rm -f ./genmake_hello.c  ./genmake_hello
471        cat >> genmake_hello.c << EOF
472    #include <stdio.h>
473    int main(int argc, char **argv) {
474      printf("Hello!\n");
475      return 0;
476    }
477    EOF
478        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
479        p_CC=
480      for c in $tmp ; do      for c in $tmp ; do
481          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
482          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
483            $COMM >> $LOGFILE 2>&1
484            RETVAL=$?
485            if test "x${RETVAL}" = x0 ; then
486                echo " $c test successful" >> $LOGFILE
487                p_CC="$p_CC $c"
488            fi
489        done
490        rm -f ./genmake_hello.c ./genmake_hello
491        if test "x${p_CC}" = x ; then
492            cat 1>&2 <<EOF
493    
494    Error: No C compilers were found in your path.  Please specify one using:
495    
496        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
497        2) the CC or MITGCM_CC environment variables.
498    
499    EOF
500            exit 1
501        else
502            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
503            if test "x$CC" = x ; then
504                CC=`echo $p_CC | $AWK '{print $1}'`
505                echo "  Setting C compiler to: "$CC
506            fi
507        fi
508        echo " --> set CC='$CC'" >> $LOGFILE
509    }
510    
511    # Guess possible config options for this host
512    find_possible_optfile()  {
513    
514        echo >> $LOGFILE
515        echo "running: find_possible_optfile()" >> $LOGFILE
516        tmp1=`uname`"_"`uname -m`
517        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
518        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
519        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
520        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
521        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
522        PLATFORM=$tmp3
523        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
524        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
525        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
526    
527        #================================================================
528        #  look for possible FORTRAN compilers
529        echo "  look for possible FORTRAN compilers" >> $LOGFILE
530        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
531        p_FC=
532        rm -f ./genmake_hello.f
533        cat >> genmake_hello.f <<EOF
534        program hello        program hello
535        do i=1,3        do i=1,3
536          print *, 'hello world : ', i          print *, 'hello world : ', i
537        enddo        enddo
538        end        end
539  EOF  EOF
540          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
541            COMM="$f -o genmake_hello genmake_hello.f"
542            echo $COMM >> $LOGFILE
543            $COMM >> $LOGFILE 2>&1
544          RETVAL=$?          RETVAL=$?
545          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
546              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
547                p_FC="$p_FC $f"
548          fi          fi
549      done      done
550      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
551      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
552          cat 1>&2 <<EOF          cat 1>&2 <<EOF
553    
# Line 140  Error: No Fortran compilers were found i Line 555  Error: No Fortran compilers were found i
555    
556      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
557      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
558      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
559    
560  EOF  EOF
561          exit 1          exit 1
562      else      else
563          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
564          echo "   "$p_FC      fi
565          if test "x$FC" = x ; then  
566              FC=`echo $p_FC | $AWK '{print $1}'`      #  Use the first of the compilers found in the current PATH
567          fi      #  that has a correctly-named optfile
568        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
569            for i in $p_FC ; do
570                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
571                if test -r $OPTFILE ; then
572                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
573                    break
574                fi
575            done
576        fi
577    
578        if test "x$OPTFILE" = x ; then
579            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
580            if test ! -r $OPTFILE ; then
581                 echo "  I looked for the file "$OPTFILE" but did not find it"
582            fi
583      fi      fi
584    
     for i in $p_FC ; do  
         p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
         if test -r $p_OF ; then  
             OPTFILE=$p_OF  
             echo "  The options file:  $p_OF"  
             echo "    appears to match so we'll use it."  
             break  
         fi  
     done  
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          cat 1>&2 <<EOF          cat 1>&2 <<EOF
587    
# Line 176  Error: No options file was found in:  $R Line 597  Error: No options file was found in:  $R
597  EOF  EOF
598          exit 1          exit 1
599      fi      fi
600        
601  #     # look for possible MPI libraries  #     # look for possible MPI libraries
602  #     mpi_libs=  #     mpi_libs=
603  #     mpi_fort=`which mpif77 2>/dev/null`  #     mpi_fort=`which mpif77 2>/dev/null`
# Line 195  EOF Line 616  EOF
616  #       if test "x${RETVAL}" = x0 ; then  #       if test "x${RETVAL}" = x0 ; then
617  #           a=`cat out`  #           a=`cat out`
618  #           for i in $a ; do  #           for i in $a ; do
619  #               case $i in  #               case $i in
620  #                   -*)  #                   -*)
621  #                       mpi_libs="$mpi_libs $i" ;;  #                       mpi_libs="$mpi_libs $i" ;;
622  #               esac  #               esac
# Line 205  EOF Line 626  EOF
626  #       fi  #       fi
627  #       rm -f test.f out  #       rm -f test.f out
628  #     fi  #     fi
   
629  }  }
630    
631  #  Parse the package dependency information  #  Parse the package dependency information
# Line 214  get_pdepend_list()  { Line 634  get_pdepend_list()  {
634      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
635      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
636      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
637          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
638          > ./.pd_tmp          > ./.pd_tmp
639        RETVAL=$?
640        if test ! "x${RETVAL}" = x0 ; then
641          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
642          exit 1
643        fi
644      . ./.pd_tmp      . ./.pd_tmp
645      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     echo -n "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
     echo  
     echo "Usage: "$0" [OPTIONS]"  
     echo "  where [OPTIONS] can be:"  
     echo  
     echo "    -help | --help | -h | --h"  
     echo "    -nooptfile | --nooptfile"  
     echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  
     echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
     echo "    -pdepend NAME | --pdepend NAME"  
     echo "      -pdepend=NAME | --pdepend=NAME"  
     echo "    -pdefault NAME | --pdefault NAME"  
     echo "      -pdefault=NAME | --pdefault=NAME"  
     echo "    -make NAME | -m NAME"  
     echo "      --make=NAME | -m=NAME"  
     echo "    -makefile NAME | -mf NAME"  
     echo "      --makefile=NAME | -mf=NAME"  
     echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  
     echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  
     echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
     echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
     echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  
     echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
     echo "    -disable NAME | --disable NAME"  
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -standarddirs NAME | --standarddirs NAME"  
     echo "      -standarddirs=NAME | --standarddirs=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"  
     echo  
     echo "  and NAME is a string such as:"  
     echo  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
     echo  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
646  }  }
647    
648  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
649  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
650    
651        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
652        if test ! "x$FC_NAMEMANGLE" = x ; then
653            return 0
654        fi
655        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
656    
657      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
658        
659      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
660  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
661  EOF  EOF
662      $MAKE genmake_test.o > genmake_test.log 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
663        echo ' '$COMM >> $LOGFILE
664        $COMM >> $LOGFILE 2>&1
665      RETVAL=$?      RETVAL=$?
666      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
667          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
668          echo          cat <<EOF>> $LOGFILE
669          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
670          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: C test compile fails
671          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
672     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
673    EOF
674          return 1          return 1
675      fi      fi
676      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
677      RETVAL=$?      RETVAL=$?
678      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
679          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
680          echo          cat <<EOF>> $LOGFILE
681          echo "WARNING: The \"nm\" command failed."  
682          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: The "nm" command failed.
683          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
684     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
685    EOF
686          return 1          return 1
687      fi      fi
688      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
689        subroutine tcall( string )        subroutine tcall( string )
690        character*(*) string        character*(*) string
691        call tsub( string )        call tsub( string )
692        end        end
693  EOF  EOF
694      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
695        echo ' '$COMM >> $LOGFILE
696        $COMM >> $LOGFILE 2>&1
697      RETVAL=$?      RETVAL=$?
698      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
699          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
700          echo          cat <<EOF>> $LOGFILE
701          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
702          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
703          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
704     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
705    EOF
706          return 1          return 1
707      fi      fi
708      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
709      RETVAL=$?      RETVAL=$?
710      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
711          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
712          echo          cat <<EOF>> $LOGFILE
713          echo "WARNING: The \"nm\" command failed."  
714          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"   WARNING: The "nm" command failed.
715          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
716     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
717    EOF
718          return 1          return 1
719      fi      fi
720    
# Line 351  EOF Line 739  EOF
739    
740      #  cleanup the testing files      #  cleanup the testing files
741      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
742    
743        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
744    }
745    
746    check_HAVE_CLOC()  {
747        echo >> $LOGFILE
748        echo "running: check_HAVE_CLOC()" >> $LOGFILE
749        get_fortran_c_namemangling
750        cat <<EOF > genmake_tc_1.c
751    $FC_NAMEMANGLE
752    #include <stdio.h>
753    #include <stdlib.h>
754    #include <unistd.h>
755    #include <assert.h>
756    #include <sys/time.h>
757    void FC_NAMEMANGLE(cloc) ( double *curtim )
758    {
759     struct timeval tv1;
760     gettimeofday(&tv1 , (void *)NULL );
761     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
762     *curtim = *curtim/1.E6;
763    }
764    EOF
765        COMM="$CC $CFLAGS -c genmake_tc_1.c"
766        echo $COMM >> $LOGFILE
767        $COMM >> $LOGFILE 2>&1
768        RET_C=$?
769        cat <<EOF > genmake_tc_2.$FS
770          program hello
771          REAL*8 wtime
772          external cloc
773          call cloc(wtime)
774          print *," HELLO WORLD", wtime
775          end
776    EOF
777        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
778        echo $COMM >> $LOGFILE
779        $COMM >> $LOGFILE 2>&1
780        RET_F=$?
781        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
782        RETVAL=$?
783        if test "x$RETVAL" = x0 ; then
784            HAVE_CLOC=t
785        fi
786        rm -f genmake_tc*
787        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
788  }  }
789    
790    check_HAVE_SIGREG()  {
791        if test ! "x$HAVE_SIGREG" = x ; then
792            return
793        fi
794        echo >> $LOGFILE
795        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
796        get_fortran_c_namemangling
797        cat <<EOF > genmake_tc_1.c
798    $FC_NAMEMANGLE
799    #include <stdlib.h>
800    #include <stdio.h>
801    #include <signal.h>
802    #include <errno.h>
803    #include <ucontext.h>
804    
805    int * ip;
806    
807    static void killhandler(
808        unsigned int sn, siginfo_t  si, struct ucontext *sc )
809    {
810        *ip = *ip + 1;
811        return;
812    }
813    
814    void FC_NAMEMANGLE(sigreg) (int * aip)
815    {
816        struct sigaction s;
817        ip = aip;
818        s.sa_flags = SA_SIGINFO;
819        s.sa_sigaction = (void *)killhandler;
820        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
821            printf("Sigaction returned error = %d\n", errno);
822            exit(0);
823        }
824        return;
825    }
826    EOF
827        COMM="$CC $CFLAGS -c genmake_tc_1.c"
828        echo $COMM >> $LOGFILE
829        $COMM >> $LOGFILE 2>&1
830        RET_C=$?
831        cat <<EOF > genmake_tc_2.$FS
832          program hello
833          integer anint
834          common /iv/ anint
835          external sigreg
836          call sigreg(anint)
837          end
838    EOF
839        cat genmake_tc_2.$FS >> $LOGFILE
840        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
841        echo $COMM >> $LOGFILE
842        $COMM >> $LOGFILE 2>&1
843        RETVAL=$?
844        if test "x$RETVAL" = x0 ; then
845            HAVE_SIGREG=t
846        fi
847        rm -f genmake_tc*
848        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
849    }
850    
851    check_HAVE_SETRLSTK()  {
852        if test ! "x$HAVE_SETRLSTK" = x ; then
853            return
854        fi
855        echo >> $LOGFILE
856        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
857        get_fortran_c_namemangling
858        cat <<EOF > genmake_tc_1.c
859    $FC_NAMEMANGLE
860    #include <sys/time.h>
861    #include <sys/resource.h>
862    #include <unistd.h>
863    void FC_NAMEMANGLE(setrlstk) ()
864    {
865        struct rlimit rls;
866        rls.rlim_cur = RLIM_INFINITY;
867        rls.rlim_max = RLIM_INFINITY;
868        setrlimit(RLIMIT_STACK, &rls);
869        return;
870    }
871    EOF
872        COMM="$CC $CFLAGS -c genmake_tc_1.c"
873        echo $COMM >> $LOGFILE
874        $COMM >> $LOGFILE 2>&1
875        RET_C=$?
876        cat <<EOF > genmake_tc_2.$FS
877          program hello
878          external setrlstk
879          call setrlstk()
880          end
881    EOF
882        cat genmake_tc_2.$FS >> $LOGFILE
883        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
884        echo $COMM >> $LOGFILE
885        $COMM >> $LOGFILE 2>&1
886        RETVAL=$?
887        if test "x$RETVAL" = x0 ; then
888            HAVE_SETRLSTK=t
889        fi
890        rm -f genmake_tc*
891        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
892    }
893    
894    check_HAVE_STAT()  {
895        echo >> $LOGFILE
896        echo "running: check_HAVE_STAT()" >> $LOGFILE
897        get_fortran_c_namemangling
898        cat <<EOF > genmake_tc_1.c
899    $FC_NAMEMANGLE
900    #include <stdio.h>
901    #include <stdlib.h>
902    #include <unistd.h>
903    #include <sys/stat.h>
904    #include <sys/types.h>
905    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
906    {
907        char name[512];
908        struct stat astat;
909    
910        name[0] = 'a'; name[1] = '\0';
911        if (! stat(name, &astat))
912            *nbyte = (int)(astat.st_size);
913        else
914            *nbyte = -1;
915    }
916    EOF
917        COMM="$CC $CFLAGS -c genmake_tc_1.c"
918        echo $COMM >> $LOGFILE
919        $COMM >> genmake_tc.log 2>&1
920        RET_C=$?
921        cat <<EOF > genmake_tc_2.$FS
922          program hello
923          integer nbyte
924          call tfsize(nbyte)
925          print *," HELLO WORLD", nbyte
926          end
927    EOF
928        cat genmake_tc_2.$FS >> $LOGFILE
929        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
930        echo $COMM >> $LOGFILE
931        $COMM >> genmake_tc.log 2>&1
932        RETVAL=$?
933        if test "x$RETVAL" = x0 ; then
934            HAVE_STAT=t
935        fi
936        rm -f genmake_tc*
937        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
938    }
939    
940    check_netcdf_libs()  {
941        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
942            return
943        fi
944        echo >> $LOGFILE
945        echo "running: check_netcdf_libs()" >> $LOGFILE
946        cat <<EOF > genmake_tnc.F
947          program fgennc
948    #include "netcdf.inc"
949    EOF
950        if test ! "x$MPI" = x ; then
951            echo '#include "mpif.h"' >> genmake_tnc.F
952        fi
953        cat <<EOF >> genmake_tnc.F
954          integer iret, ncid, xid
955          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
956          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
957          iret = nf_def_dim(ncid, 'X', 11, xid)
958          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
959          iret = nf_close(ncid)
960          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
961          end
962    EOF
963        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
964        cat genmake_tnc.F >> genmake_tnc.log
965        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
966        RET_CPP=f
967        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
968        echo "$COMM" >> genmake_tnc.log
969        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
970        if test "x$RET_CPP" = xf ; then
971            echo "  WARNING: CPP failed to pre-process the netcdf test." \
972                >> genmake_tnc.log
973            echo "    Please check that \$INCLUDES is properly set." \
974                >> genmake_tnc.log
975        fi
976        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
977        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
978        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
979            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
980        RET_COMPILE=$?
981        cat genmake_tnc.log >> $LOGFILE
982    
983        #EH3  Remove test program execution for machines that either disallow
984        #EH3  execution or cannot support it (eg. cross-compilers)
985        #EH3
986        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
987        #EH3 RETVAL=$?
988        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
989    
990        if test "x$RET_COMPILE" = x0 ; then
991            HAVE_NETCDF=t
992            echo "check_netcdf: successful" >> $LOGFILE
993        else
994            # try again with "-lnetcdf" added to the libs
995            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
996            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
997            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
998            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
999            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1000                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1001                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1002            RET_COMPILE=$?
1003            echo >> $LOGFILE
1004            cat genmake_tnc.log >> $LOGFILE
1005            if test "x$RET_COMPILE" = x0 ; then
1006                LIBS="$LIBS -lnetcdf"
1007                HAVE_NETCDF=t
1008                echo "check_netcdf: successful" >> $LOGFILE
1009            else
1010            # try again with "-lnetcdff" added to the libs
1011                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1012                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1013                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1014                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1015                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1016                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1017                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1018                RET_COMPILE=$?
1019                echo >> $LOGFILE
1020                cat genmake_tnc.log >> $LOGFILE
1021                if test "x$RET_COMPILE" = x0 ; then
1022                    LIBS="$LIBS -lnetcdff -lnetcdf"
1023                    HAVE_NETCDF=t
1024                    echo "check_netcdf: successful" >> $LOGFILE
1025                fi
1026            fi
1027        fi
1028        rm -f genmake_tnc*
1029        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1030    }
1031    
1032    check_lapack_libs()  {
1033        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1034            return
1035        fi
1036        echo >> $LOGFILE
1037        echo "running: check_lapack_libs()" >> $LOGFILE
1038        cat <<EOF > genmake_tla.F
1039          program fgenla
1040          integer info
1041          integer ipiv( 2 )
1042          double precision ab( 4, 2 ), b( 2 )
1043          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1044          data b / 1., 1. /
1045          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1046          IF (info .NE. 0) write(*,*) 'Error:', info
1047          write(*,*) b
1048          end
1049    EOF
1050        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1051        cat genmake_tla.F >> genmake_tla.log
1052        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1053        RET_CPP=f
1054        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1055        echo "$COMM" >> genmake_tla.log
1056        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1057        if test "x$RET_CPP" = xf ; then
1058            echo "  WARNING: CPP failed to pre-process the lapack test." \
1059                >> genmake_tla.log
1060            echo "    Please check that \$INCLUDES is properly set." \
1061                >> genmake_tla.log
1062        fi
1063        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1064        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1065        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1066            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1067        RET_COMPILE=$?
1068        cat genmake_tla.log >> $LOGFILE
1069    
1070        # test program execution not always possible (see check_netcdf_libs)
1071        #
1072        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1073        #RETVAL=$?
1074        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1075    
1076        if test "x$RET_COMPILE" = x0 ; then
1077            HAVE_LAPACK=t
1078            echo "check_lapack: successful" >> $LOGFILE
1079        else
1080            # try again with "-llapack" added to the libs
1081            echo "==> try again with added '-llapack'" > genmake_tla.log
1082            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1083            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1084            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1085            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1086                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1087                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1088            RET_COMPILE=$?
1089            echo >> $LOGFILE
1090            cat genmake_tla.log >> $LOGFILE
1091            if test "x$RET_COMPILE" = x0 ; then
1092                LIBS="$LIBS -llapack"
1093                HAVE_LAPACK=t
1094                echo "check_lapack: successful" >> $LOGFILE
1095            else
1096            # try again with "-lf77blas -lcblas" added to the libs
1097                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1098                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1099                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1100                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1101                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1102                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1103                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1104                RET_COMPILE=$?
1105                echo >> $LOGFILE
1106                cat genmake_tla.log >> $LOGFILE
1107                if test "x$RET_COMPILE" = x0 ; then
1108                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1109                    HAVE_LAPACK=t
1110                    echo "check_lapack: successful" >> $LOGFILE
1111                else
1112                # try again with "-latlas" added to the libs
1113                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1114                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1115                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1116                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1117                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1118                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1119                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1120                    RET_COMPILE=$?
1121                    echo >> $LOGFILE
1122                    cat genmake_tla.log >> $LOGFILE
1123                    if test "x$RET_COMPILE" = x0 ; then
1124                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1125                        HAVE_LAPACK=t
1126                        echo "check_lapack: successful" >> $LOGFILE
1127                    fi
1128                fi
1129            fi
1130        fi
1131        rm -f genmake_tla*
1132        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1133    }
1134    
1135    
1136    ###############################################################################
1137    #   Sequential part of script starts here
1138    ###############################################################################
1139    
1140  #  Set defaults here  #  Set defaults here
1141  COMMANDL="$0 $@"  COMMANDL="$0 $@"
1142    
# Line 360  PLATFORM= Line 1144  PLATFORM=
1144  LN=  LN=
1145  S64=  S64=
1146  KPP=  KPP=
1147  FC=  #FC=
1148    #CC=gcc
1149    #CPP=
1150  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
1151  DEFINES=  DEFINES=
1152  PACKAGES=  PACKAGES=
1153  ENABLE=  ENABLE=
1154  DISABLE=  DISABLE=
1155  MAKEFILE=  # MAKEFILE=
1156  MAKEDEPEND=  # MAKEDEPEND=
1157  PDEPEND=  PKG_DEPEND=
1158  DUMPSTATE=t  PKG_GROUPS=
1159  PDEFAULT=  DUMPSTATE=f
1160  OPTFILE=  OPTFILE=
1161  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1162  FFLAGS=  FFLAGS=
1163  FOPTIM=  FOPTIM=
1164    FEXTRAFLAGS=
1165    USE_EXTENDED_SRC=
1166    EXTENDED_SRC_FLAG=
1167    GET_FC_VERSION=
1168  CFLAGS=  CFLAGS=
1169  KFLAGS1=  KFLAGS1=
1170  KFLAGS2=  KFLAGS2=
1171    #LDADD=
1172  LIBS=  LIBS=
1173  KPPFILES=  KPPFILES=
1174  NOOPTFILES=  NOOPTFILES=
1175  NOOPTFLAGS=  NOOPTFLAGS=
1176    MPI=
1177    MPIPATH=
1178    OMP=
1179    OMPFLAG=
1180    USE_R4=
1181    TS=
1182    PAPIS=
1183    PCLS=
1184    FOOLAD=
1185    PAPI=
1186    PCL=
1187    HPMT=
1188    GSL=
1189    DEVEL=
1190    HAVE_TEST_L=
1191    
1192  # DEFINES checked by test compilation  # DEFINES checked by test compilation or command-line
1193  HAVE_SYSTEM=  HAVE_SYSTEM=
1194  HAVE_FDATE=  HAVE_FDATE=
1195  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1196    HAVE_CLOC=
1197    # HAVE_SETRLSTK=
1198    HAVE_STAT=
1199    HAVE_NETCDF=
1200    HAVE_ETIME=
1201    IGNORE_TIME=
1202    HAVE_LAPACK=
1203    
1204  MODS=  MODS=
1205  TOOLSDIR=  TOOLSDIR=
1206  SOURCEDIRS=  SOURCEDIRS=
1207  INCLUDEDIRS=  INCLUDEDIRS=
1208  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1209    
1210    G2ARGS=
1211    BASH=
1212  PWD=`pwd`  PWD=`pwd`
1213  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1214  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1215  THISHOSTNAME=`hostname`  EMBED_SRC=
1216    THISHOST=`hostname`
1217  THISCWD=`pwd`  THISCWD=`pwd`
1218  THISDATE=`date`  THISDATE=`date`
1219    THISUSER=`echo $USER`
1220    THISVER=
1221  MACHINE=`uname -a`  MACHINE=`uname -a`
1222  EXECUTABLE=  EXECUTABLE=
1223  EXEHOOK=  EXEHOOK=
1224  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1225  IEEE=  IEEE=
1226  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1227      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1228  fi  fi
1229    FS=
1230    FS90=
1231    
1232  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1233  AD_OPTFILE=  AD_OPTFILE=
# Line 424  FTL_TAF_FLAGS= Line 1242  FTL_TAF_FLAGS=
1242  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1243  TAMC_EXTRA=  TAMC_EXTRA=
1244    
   
1245  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1246  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1247  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1248    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1249    
1250  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1251  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1252  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1253  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1254  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1255  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"
1256    
1257  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1258  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1259  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1260  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA"
1261    
1262  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1263  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1264    
1265    cat <<EOF
1266    
1267    GENMAKE :
1268    
1269    A program for GENerating MAKEfiles for the MITgcm project.
1270       For a quick list of options, use "genmake2 -h"
1271    or for more detail see the Developer's HOWTO manual at:
1272       http://mitgcm.org/public/docs.html
1273    
1274    EOF
1275    
1276    LOGFILE="genmake.log"
1277    #- clean-up previous genmake logfiles:
1278    rm -f genmake_state genmake_*optfile $LOGFILE
1279    
 echo  
1280  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1281  gm_local="genmake_local"  gm_local="genmake_local"
1282  for i in . $MODS ; do  printf "  getting local config information:  "
1283      if test -r $i/$gm_local ; then  if test -f $gm_local ; then
         . $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
1284      echo "using $gm_local"      echo "using $gm_local"
1285      . $gm_local      . $gm_local
1286      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
# Line 464  else Line 1289  else
1289      echo "none found"      echo "none found"
1290  fi  fi
1291    
1292  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1293  #parse_options  #parse_options
1294  ac_prev=  ac_prev=
1295  for ac_option ; do  for ac_option in "$@" ; do
1296    
1297        G2ARGS="$G2ARGS \"$ac_option\""
1298    
1299      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1300      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 484  for ac_option ; do Line 1302  for ac_option ; do
1302          ac_prev=          ac_prev=
1303          continue          continue
1304      fi      fi
1305        
1306      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1307        
1308      case $ac_option in      case $ac_option in
1309                    
1310          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 499  for ac_option ; do Line 1317  for ac_option ; do
1317          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1318              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1319                    
1320          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
1321              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1322          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1323              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1324                    
1325          -pdepend | --pdepend)          -pdepend | --pdepend)
1326              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1327          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1328              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1329                    
1330          -pdefault | --pdefault)          -pgroups | --pgroups)
1331              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1332          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1333              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1334                    
1335          -make | --make | -m | --m)          -make | --make | -m | --m)
1336              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1337          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1338              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1339                    
1340            -bash | --bash)
1341                ac_prev=BASH ;;
1342            -bash=* | --bash=*)
1343                BASH=$ac_optarg ;;
1344            
1345            -makedepend | --makedepend | -md | --md)
1346                ac_prev=MAKEDEPEND ;;
1347            -makedepend=* | --makedepend=* | -md=* | --md=*)
1348                MAKEDEPEND=$ac_optarg ;;
1349            
1350          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1351              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1352          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1353              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1354                    
1355          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1356              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1357          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1358              PLATFORM=$ac_optarg ;;              echo
1359                usage
1360                ;;
1361                    
1362          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1363              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 554  for ac_option ; do Line 1384  for ac_option ; do
1384          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1385              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1386    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1387  #           -cpp | --cpp)  #           -cpp | --cpp)
1388  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1389  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1390  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1391                        
1392            -cc | --cc)
1393                ac_prev=CC ;;
1394            -cc=* | --cc=*)
1395                CC=$ac_optarg ;;
1396            
1397          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1398              ac_prev=FC ;;              ac_prev=FC ;;
1399          -fc=* | --fc=*)          -fc=* | --fc=*)
1400              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1401                    
1402            -fs | --fs)
1403                ac_prev=FS ;;
1404            -fs=* | --fs=*)
1405                FS=$ac_optarg ;;
1406            
1407            -fs90 | --fs90)
1408                ac_prev=FS90 ;;
1409            -fs90=* | --fs90=*)
1410                FS90=$ac_optarg ;;
1411            
1412            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1413                USE_R4=true ;;
1414    
1415          -ieee | --ieee)          -ieee | --ieee)
1416              IEEE=true ;;              IEEE=true ;;
1417          -noieee | --noieee)          -noieee | --noieee)
1418              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1419                    -devel | --devel)
1420                IEEE=true ; DEVEL=true ;;
1421            -gsl | --gsl)
1422                GSL=true ;;
1423    
1424            -ts | --ts)
1425                TS=true ;;
1426            -papis | --papis)
1427                PAPIS=true ;;
1428            -pcls | --pcls)
1429                PCLS=true ;;
1430            -foolad | --foolad)
1431                FOOLAD=true ;;
1432            -papi | --papi)
1433                PAPI=true ;;
1434            -pcl | --pcl)
1435                PCL=true ;;
1436            -hpmt | --hpmt)
1437                HPMT=true ;;
1438    
1439          -mpi | --mpi)          -mpi | --mpi)
1440              MPI=true ;;              MPI=true ;;
1441          -nompi | --nompi)          -mpi=* | --mpi=*)
1442              MPI= ;;              MPIPATH=$ac_optarg
1443                MPI=true ;;
1444                    
1445          -jam | --jam)          -omp | --omp)
1446              JAM=1 ;;              OMP=true ;;
1447          -nojam | --nojam)          -omp=* | --omp=*)
1448              JAM=0 ;;              OMPFLAG=$ac_optarg
1449                OMP=true ;;
1450                    
1451          -ds | --ds)          -ds | --ds)
1452              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1453                    
1454            -extra_flag | --extra_flag)
1455                ac_prev=FEXTRAFLAGS ;;
1456            -extra_flag=* | --extra_flag=*)
1457                FEXTRAFLAGS=$ac_optarg ;;
1458            
1459          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1460              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1461          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 596  for ac_option ; do Line 1465  for ac_option ; do
1465              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1466          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1467              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1468            
1469            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1470                IGNORE_TIME="-DIGNORE_TIME" ;;
1471    
1472            -es | --es | -embed-source | --embed-source)
1473                EMBED_SRC=t ;;
1474    
1475          -*)          -*)
1476              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
# Line 608  for ac_option ; do Line 1483  for ac_option ; do
1483              ;;              ;;
1484                    
1485      esac      esac
1486        
1487  done  done
1488    
1489  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1490      echo      echo
1491      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1492      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1493      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1494      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1495        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1496        echo "WARNING: ignore \"./.genmakerc\" and continue."
1497      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1498  fi  fi
1499    
1500    #  Find the MITgcm ${ROOTDIR}
1501  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1502      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1503        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1504          ROOTDIR=".."          ROOTDIR=".."
1505      else      else
1506          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1507              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1508                  ROOTDIR=$d                  ROOTDIR=$d
1509                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1510                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1511                  break                  break
1512              fi              fi
1513          done          done
# Line 648  if test ! -d ${ROOTDIR} ; then Line 1524  if test ! -d ${ROOTDIR} ; then
1524      exit 1      exit 1
1525  fi  fi
1526    
1527  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1528    version_file="${ROOTDIR}/doc/tag-index"
1529    if test -f $version_file ; then
1530        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1531    #-  remove ./BUILD_INFO.h file if older than version_file
1532        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1533            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1534            rm -f ./BUILD_INFO.h
1535        fi
1536    fi
1537    
1538    if test "x$MAKEFILE" = x ; then
1539        MAKEFILE="Makefile"
1540    fi
1541    
1542    echo "  getting OPTFILE information:"
1543  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1544      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1545          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1546          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1547          find_possible_configs          find_possible_optfile
1548      else      else
1549          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1550      fi      fi
# Line 664  if test "x$OPTFILE" != xNONE ; then Line 1555  if test "x$OPTFILE" != xNONE ; then
1555          . "$OPTFILE"          . "$OPTFILE"
1556          RETVAL=$?          RETVAL=$?
1557          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1558              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1559              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1560              exit 1              exit 1
1561          fi          fi
1562          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1563              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1564          fi          fi
1565      else      else
# Line 677  if test "x$OPTFILE" != xNONE ; then Line 1568  if test "x$OPTFILE" != xNONE ; then
1568      fi      fi
1569  fi  fi
1570    
1571  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1572  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1573      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1574          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 691  if test "x${AD_OPTFILE}" != xNONE ; then Line 1582  if test "x${AD_OPTFILE}" != xNONE ; then
1582          . "$AD_OPTFILE"          . "$AD_OPTFILE"
1583          RETVAL=$?          RETVAL=$?
1584          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1585              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1586              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1587              exit 1              exit 1
1588          fi          fi
1589          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1590              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1591          fi          fi
1592      else      else
# Line 704  if test "x${AD_OPTFILE}" != xNONE ; then Line 1595  if test "x${AD_OPTFILE}" != xNONE ; then
1595      fi      fi
1596  fi  fi
1597    
1598  #  Check that FC, LINK, CPP, S64, and LN are defined.  If not,  #====================================================================
1599  #  complain and abort!  #  Set default values if not set by the optfile
1600    #
1601    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1602    #  either set defaults or complain and abort!
1603    if test ! "x$BASH" = x ; then
1604        # add a trailing space so that it works within the Makefile syntax (see below)
1605        BASH="$BASH "
1606    fi
1607  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1608      cat <<EOF 1>&2      cat <<EOF 1>&2
1609    
# Line 716  Error: no Fortran compiler: please speci Line 1614  Error: no Fortran compiler: please speci
1614  EOF  EOF
1615      exit 1      exit 1
1616  fi  fi
1617    if test "x$GET_FC_VERSION" != x ; then
1618      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1619      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1620      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1621      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1622      if test -s genmake_fc_vers1 ; then
1623        cat genmake_fc_vers1 >> $LOGFILE
1624      else
1625        cat genmake_fc_vers2 >> $LOGFILE
1626      fi
1627      echo "<-- compiler version ----" >> $LOGFILE
1628      rm -f genmake_fc_vers1 genmake_fc_vers2
1629    fi
1630    
1631    if test "x$CC" = x ; then
1632        look_for_C_compilers
1633    fi
1634    
1635  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1636      LINK=$FC      LINK=$FC
1637  fi  fi
1638    if test "x$MAKE" = x ; then
1639        MAKE="make"
1640    fi
1641  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1642      CPP="cpp"      CPP="cpp -traditional -P"
1643  fi  fi
1644    #EH3 === UGLY ===
1645    #  The following is an ugly little hack to check for $CPP in /lib/ and
1646    #  it should eventually be replaced with a more general function that
1647    #  searches a combo of the user's path and a list of "usual suspects"
1648    #  to find the correct location for binaries such as $CPP.
1649    for i in " " "/lib/" ; do
1650        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1651    done
1652    #EH3 === UGLY ===
1653  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1654  RETVAL=$?  RETVAL=$?
1655  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 738  EOF Line 1666  EOF
1666  else  else
1667      rm -f test_cpp      rm -f test_cpp
1668  fi  fi
1669  if test "x$MAKEDEPEND" = x ; then  
1670      MAKEDEPEND=makedepend  look_for_makedepend
1671  fi  
1672    #  Check that soft-link command is set and usable
1673  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1674      LN="ln -s"      LN="ln -s"
1675  fi  fi
# Line 750  RETVAL=$? Line 1679  RETVAL=$?
1679  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1680      cat <<EOF 1>&2      cat <<EOF 1>&2
1681    
1682  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1683    command in the optfile.    command in the optfile.
1684    
1685  EOF  EOF
1686      exit 1      exit 1
1687  fi  fi
1688    test -L genmake_tlink > /dev/null 2>&1
1689    RETVAL=$?
1690    if test "x$RETVAL" = x0 ; then
1691        HAVE_TEST_L=t
1692    fi
1693  rm -f genmake_test_ln genmake_tlink  rm -f genmake_test_ln genmake_tlink
1694    
1695    #  Check for broken *.F/*.f handling and fix if possible
1696    check_for_broken_Ff
1697    
1698    if test ! "x$MPI" = x ; then
1699          echo "  Turning on MPI cpp macros"
1700          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1701    fi
1702    if test ! "x$OMP" = x ; then
1703          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1704          FFLAGS="$FFLAGS $OMPFLAG"
1705          F90FLAGS="$F90FLAGS $OMPFLAG"
1706          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1707    fi
1708    
1709    if test ! "x$USE_R4" = x ; then
1710          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1711          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1712    fi
1713    
1714    if test ! "x$TS" = x ; then
1715          echo "  Turning on timing per timestep"
1716          if test ! "x$FOOLAD" = x ; then
1717                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1718          else
1719                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1720          fi
1721          PACKAGES="$PACKAGES showflops"
1722    fi
1723    if test ! "x$PAPIS" = x ; then
1724          echo "  Turning on PAPI flop summary per timestep"
1725          echo "  Please make sure PAPIINC, PAPILIB are defined"
1726          if test ! "x$FOOLAD" = x ; then
1727                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1728          else
1729                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1730          fi
1731          INCLUDES="$INCLUDES $PAPIINC"
1732          LIBS="$LIBS $PAPILIB"
1733          PACKAGES="$PACKAGES showflops"
1734    fi
1735    if test ! "x$PCLS" = x ; then
1736          echo "  Turning on PCL counter summary per timestep"
1737          echo "  Please make sure PCLINC, PCLLIB are defined"
1738          if test ! "x$FOOLAD" = x ; then
1739                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1740          else
1741                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1742          fi
1743          INCLUDES="$INCLUDES $PCLINC"
1744          LIBS="$LIBS $PCLLIB"
1745          PACKAGES="$PACKAGES showflops"
1746    fi
1747    if test ! "x$PAPI" = x ; then
1748          if test ! "x$PAPIS" = x ; then
1749              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1750              echo "  Sticking with PAPI flop summary per timestep!"
1751          else
1752              echo "  Turning on performance analysis with PAPI"
1753              echo "  Please make sure PAPIINC, PAPILIB are defined"
1754              DEFINES="$DEFINES -DUSE_PAPI"
1755              INCLUDES="$INCLUDES $PAPIINC"
1756              LIBS="$LIBS $PAPILIB"
1757          fi
1758    fi
1759    if test ! "x$PCL" = x ; then
1760          if test ! "x$PCLS" = x ; then
1761              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1762              echo "  Sticking with PCL flop summary per timestep!"
1763          else
1764              echo "  Turning on performance analysis with PCL"
1765              echo "  Please make sure PCLINC, PCLLIB are defined"
1766              DEFINES="$DEFINES -DUSE_PCL"
1767              INCLUDES="$INCLUDES $PCLINC"
1768              LIBS="$LIBS $PCLLIB"
1769          fi
1770    fi
1771    if test ! "x$HPMT" = x ; then
1772          if test ! "x$PAPI" = x ; then
1773              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1774              echo "  Sticking with PAPI!"
1775          else if test ! "x$PCL" = x ; then
1776              echo "  PCL and the HPM Toolkit cannot co-exist!"
1777              echo "  Sticking with PCL!"
1778          else
1779              echo "  Turning on performance analysis with the HPM Toolkit"
1780              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1781              DEFINES="$DEFINES -DUSE_LIBHPM"
1782              INCLUDES="$INCLUDES $HPMTINC"
1783              LIBS="$LIBS $HPMTLIB"
1784          fi
1785          fi
1786    fi
1787    if test ! "x$GSL" = x ; then
1788          echo "  Turning on use of GSL to control floating point calculations"
1789          echo "  Please make sure GSLINC, GSLLIB are defined"
1790          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1791          INCLUDES="$INCLUDES $GSLINC"
1792          LIBS="$LIBS $GSLLIB"
1793    fi
1794    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1795    if test ! "x$USE_EXTENDED_SRC" = x ; then
1796          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1797          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1798    fi
1799    
1800  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1801  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1802  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1803        program hello        program hello
1804        call system('echo hi')        call system('echo hi')
1805        end        end
1806  EOF  EOF
1807  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1808  RETVAL=$?  RETVAL=$?
1809  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1810      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 777  else Line 1816  else
1816  fi  fi
1817  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1818    
1819  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1820  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1821        program hello        program hello
1822        CHARACTER(128) string        CHARACTER*(128) string
1823        string = ' '        string = ' '
1824        call fdate( string )        call fdate( string )
1825        print *, string        print *, string
1826        end        end
1827  EOF  EOF
1828  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1829  RETVAL=$?  RETVAL=$?
1830  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1831      HAVE_FDATE=t      HAVE_FDATE=t
# Line 798  else Line 1837  else
1837  fi  fi
1838  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1839    
1840  echo "  The name mangling convention for $FC is...  "  printf "  Do we have the etime() command using $FC...  "
1841  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  cat > genmake_tcomp.$FS <<EOF
1842  if test "x$FC_NAMEMANGLE" = x ; then        program hello
1843      get_fortran_c_namemangling        REAL*4 ACTUAL, TARRAY(2)
1844  fi        EXTERNAL ETIME
1845  echo "    '$FC_NAMEMANGLE'"        REAL*4 ETIME
1846  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template        actual = etime( tarray )
1847  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1        print *, tarray
1848          end
1849    EOF
1850    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1851  RETVAL=$?  RETVAL=$?
1852  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" = x0 ; then
1853      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      HAVE_ETIME=t
1854        DEFINES="$DEFINES -DHAVE_ETIME"
1855        echo "yes"
1856    else
1857        HAVE_ETIME=
1858        echo "no"
1859    fi
1860    rm -f genmake_tcomp*
1861    
1862    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1863    check_HAVE_CLOC
1864    if test "x$HAVE_CLOC" != x ; then
1865        DEFINES="$DEFINES -DHAVE_CLOC"
1866        echo "yes"
1867    else
1868        echo "no"
1869        if test "x$EMBED_SRC" = xt ; then
1870            echo "    WARNING: you requested file embedding but it has"
1871            echo "      been disabled since C code cannot be called"
1872            EMBED_SRC=
1873        fi
1874    fi
1875    rm -f genmake_t*
1876    
1877    printf "  Can we unlimit the stack size using $FC...  "
1878    check_HAVE_SETRLSTK
1879    if test "x$HAVE_SETRLSTK" = xt ; then
1880        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1881        echo "yes"
1882    else
1883        echo "no"
1884    fi
1885    rm -f genmake_t*
1886    
1887    printf "  Can we register a signal handler using $FC...  "
1888    check_HAVE_SIGREG
1889    if test "x$HAVE_SIGREG" = xt ; then
1890        DEFINES="$DEFINES -DHAVE_SIGREG"
1891        echo "yes"
1892    else
1893        echo "no"
1894    fi
1895    rm -f genmake_t*
1896    
1897    printf "  Can we use stat() through C calls...  "
1898    check_HAVE_STAT
1899    if test "x$HAVE_STAT" != x ; then
1900        DEFINES="$DEFINES -DHAVE_STAT"
1901        echo "yes"
1902    else
1903        echo "no"
1904  fi  fi
1905    rm -f genmake_t*
1906    
1907    printf "  Can we create NetCDF-enabled binaries...  "
1908    check_netcdf_libs
1909    if test "x$HAVE_NETCDF" != x ; then
1910        DEFINES="$DEFINES -DHAVE_NETCDF"
1911        echo "yes"
1912    else
1913        echo "no"
1914    fi
1915    
1916    printf "  Can we create LAPACK-enabled binaries...  "
1917    check_lapack_libs
1918    if test "x$HAVE_LAPACK" != x ; then
1919        DEFINES="$DEFINES -DHAVE_LAPACK"
1920        echo "yes"
1921    else
1922        echo "no"
1923    fi
1924    DEFINES="$DEFINES $IGNORE_TIME"
1925    
1926    if test "x$EMBED_SRC" = xt ; then
1927        build_embed_encode
1928    fi
1929    if test "x$EMBED_SRC" = xt ; then
1930        ENABLE="$ENABLE embed_files"
1931    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
1932    fi
1933    
1934  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1935  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
1936  for d in $MODS ; do  for d in $MODS ; do
1937      if test ! -d $d ; then      if test ! -d $d ; then
1938          echo          echo
1939          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1940          exit 1          exit 1
1941      else      else
1942          echo -n " $d"          printf "$d "
1943          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1944          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1945      fi      fi
1946  done  done
1947  echo  echo
1948    
1949  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
1950      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
1951  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
1952    
1953  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1954      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1955        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1956          EXEDIR=../exe          EXEDIR=../exe
1957      else      else
1958          EXEDIR=.          EXEDIR=.
# Line 846  if test ! -d ${EXEDIR} ; then Line 1963  if test ! -d ${EXEDIR} ; then
1963      exit 1      exit 1
1964  fi  fi
1965    
1966  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
1967      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1968  fi  fi
1969  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1970      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1971      exit 1      exit 1
1972    fi
1973    if test "x$S64" = x ; then
1974        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1975        RETVAL=$?
1976        if test "x${RETVAL}" = x0 ; then
1977            S64='$(TOOLSDIR)/set64bitConst.sh'
1978        else
1979            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1980            RETVAL=$?
1981            if test "x${RETVAL}" = x0 ; then
1982                S64='$(TOOLSDIR)/set64bitConst.csh'
1983            else
1984                cat <<EOF
1985    
1986    ERROR: neither of the two default scripts:
1987    
1988        ${TOOLSDIR}/set64bitConst.sh
1989        ${TOOLSDIR}/set64bitConst.csh
1990    
1991      are working so please check paths or specify (with \$S64) a
1992      working version of this script.
1993    
1994    EOF
1995                exit 1
1996            fi
1997        fi
1998    fi
1999    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2000    
2001    EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2002    
2003    #  Set Standard Code Directories:
2004    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2005        STANDARDDIRS="eesupp model"
2006  fi  fi
2007  if test "x$S64" = x ; then  #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2008      S64='$(TOOLSDIR)/set64bitConst.sh'  echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2009    ckM=$?
2010    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2011    ckE=$?
2012    if test $ckM = 0 -a $ckE = 1 ; then
2013        STANDARDDIRS="$STANDARDDIRS eesupp"
2014  fi  fi
2015    
 EXECUTABLE=${EXECUTABLE:-mitgcmuv}  
   
2016  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2017  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2018  #  they appear as regular source code  #  they appear as regular source code
2019  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2020      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2021      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2022        ) > make_eesupp.errors 2>&1
2023      RETVAL=$?      RETVAL=$?
2024      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2025          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2026      else      else
2027          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2028          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2029          exit 1          exit 1
2030      fi      fi
2031  fi  fi
2032    
2033    #same for pkg/exch2 and pkg/regrid
2034    for pdir in exch2 regrid ; do
2035        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2036            echo "  Making source files in pkg/${pdir} from templates"
2037            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2038            ) > make_${pdir}.errors 2>&1
2039            RETVAL=$?
2040            if test "x${RETVAL}" = x0 ; then
2041                rm -f make_${pdir}.errors
2042            else
2043                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2044                cat make_${pdir}.errors 1>&2
2045                exit 1
2046            fi
2047        fi
2048    done
2049    
2050  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2051  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2052      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2053      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2054          PDEPEND=$tmp  fi
2055      else  if  test "x${PKG_DEPEND}" = x ; then
2056          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2057          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2058  else  else
2059      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2060          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2061          exit 1          exit 1
2062      fi      fi
2063        echo "  getting package dependency info from  $PKG_DEPEND"
2064    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2065        get_pdepend_list $PKG_DEPEND
2066  fi  fi
2067  echo "  getting package dependency info from  $PDEPEND"  
2068  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2069  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2070  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2071      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2072      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2073  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2074  if test ! "x${RETVAL}" = x0 ; then  fi
2075      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2076      exit 1          echo "Warning:  No package groups information was specified."
2077            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2078    else
2079        if test ! -r ${PKG_GROUPS} ; then
2080            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2081            exit 1
2082        fi
2083        echo "  getting package groups info from      $PKG_GROUPS"
2084  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2085    
2086  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2087  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2088  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2089  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2090      for i in "." $MODS ; do      for i in "." $MODS ; do
2091          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2092                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2093                  break                  break
2094          fi          fi
2095      done      done
2096  fi  fi
2097  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2098      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2099  fi      if test "x${PKG_GROUPS}" = x ; then
2100  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2101      echo "default packages file disabled"          exit 1
2102        fi
2103  else  else
2104      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2105          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2106          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2107      else      else
2108          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2109          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2110          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2111          RETVAL=$?          RETVAL=$?
2112          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2113              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2114              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2115              exit 1              exit 1
2116          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2117      fi      fi
2118  fi  fi
2119    for i in $pkg_list ; do
2120        PACKAGES="$PACKAGES $i"
2121    done
2122    echo     "    before group expansion packages are:$PACKAGES"
2123    if test "x${PKG_GROUPS}" != x ; then
2124        RET=1
2125        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2126        echo "    after group expansion packages are: $PACKAGES"
2127    fi
2128    
2129  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2130    echo "" > ./.tmp_pack
2131    for i in $PACKAGES ; do
2132        echo $i >> ./.tmp_pack
2133    done
2134    for i in `grep  "-" ./.tmp_pack` ; do
2135        j=`echo $i | sed 's/[-]//'`
2136        DISABLE="$DISABLE $j"
2137    done
2138  pack=  pack=
2139  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2140      addit="t"      addit="t"
# Line 961  PACKAGES="$pack" Line 2151  PACKAGES="$pack"
2151  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2152  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
2153  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2154    # Test if each explicitly referenced package exists
2155  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2156      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2157          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2158          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2159            exit 1
2160      fi      fi
2161      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2162  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2163  PACKAGES=  PACKAGES=
2164  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2165      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2166  done  done
2167  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2168    echo "    packages are: $PACKAGES"
2169    
2170    #  Check for package MNC: if NetCDF is available, then build the MNC
2171    #  template files ; otherwise, delete mnc from the list of packages.
2172    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2173    mnc_in=$?
2174    if test "x$HAVE_NETCDF" != xt ; then
2175        if test "x$mnc_in" = x0 ; then
2176            cat <<EOF
2177    *********************************************************************
2178    WARNING: the "mnc" package was enabled but tests failed to compile
2179      NetCDF applications.  Please check that:
2180    
2181      1) NetCDF is correctly installed for this compiler and
2182      2) the LIBS variable (within the "optfile") specifies the correct
2183           NetCDF library to link against.
2184    
2185      Due to this failure, the "mnc" package is now DISABLED.
2186    *********************************************************************
2187    EOF
2188            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2189            DISABLE="$DISABLE mnc"
2190        else
2191        #  this prevent to add mnc (due to pdepend rules) if not available
2192            DISABLE="$DISABLE mnc"
2193        fi
2194    else
2195        # we have NetCDF, we try to build MNC template files
2196        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2197        RETVAL=$?
2198        if test "x${RETVAL}" = x0 ; then
2199            rm -f make_mnc.errors
2200        else
2201            echo "Error: problem encountered while building source files in pkg/mnc:"
2202            cat make_mnc.errors 1>&2
2203            if test "x$mnc_in" = x0 ; then
2204                exit 1
2205            else
2206                DISABLE="$DISABLE mnc"
2207            fi
2208        fi
2209    fi
2210    
2211    #  Check for package PROFILES: if NetCDF is not available,
2212    #  then delete profiles from the list of available packages.
2213    if test "x$HAVE_NETCDF" != xt ; then
2214        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2215        RETVAL=$?
2216        if test "x$RETVAL" = x0 ; then
2217            cat <<EOF
2218    *********************************************************************
2219    WARNING: the "profiles" package was enabled but tests failed to
2220      compile NetCDF applications.  Please check that:
2221    
2222      1) NetCDF is correctly installed for this compiler and
2223      2) the LIBS variable (within the "optfile") specifies the correct
2224           NetCDF library to link against.
2225    
2226      Due to this failure, the "profiles" package is now DISABLED.
2227    *********************************************************************
2228    EOF
2229            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2230            DISABLE="$DISABLE profiles"
2231        else
2232        #  this prevent to add profiles (due to pdepend rules) if not available
2233            DISABLE="$DISABLE profiles"
2234        fi
2235    fi
2236    
2237  echo "  applying package dependency rules"  #  Check for package RADTRANS: if LAPACK is not available,
2238  ck=  #  then issue a warning that the direct radtrans solver is not available.
2239  while test "x$ck" != xtt ; do  if test "x$HAVE_LAPACK" != xt ; then
2240        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2241        RETVAL=$?
2242        if test "x$RETVAL" = x0 ; then
2243            cat <<EOF
2244    *********************************************************************
2245    WARNING: the "radtrans" package was enabled but tests failed to
2246      compile LAPACK applications.  This means that the direct radtrans
2247      solver is not available and compilation will fail if it is enabled.
2248      If you want to use the direct solver, please check that:
2249    
2250      1) LAPACK is correctly installed for this compiler and
2251      2) the LIBS variable (within the "optfile") specifies the correct
2252         LAPACK library to link against.
2253    *********************************************************************
2254    EOF
2255        fi
2256    fi
2257    
2258    if  test "x${PKG_DEPEND}" != x ; then
2259      echo "  applying package dependency rules"
2260      ck=
2261      while test "x$ck" != xtt ; do
2262      i=0      i=0
2263      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2264      rtot=$nname      rtot=$nname
2265      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2266    
2267          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2268          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 994  while test "x$ck" != xtt ; do Line 2274  while test "x$ck" != xtt ; do
2274                  pin="t"                  pin="t"
2275              fi              fi
2276          done          done
2277            #  or in the current $STANDARDDIRS list?
2278            for p in $STANDARDDIRS ; do
2279                if test "x$p" = "x$pname" ; then pin="t" ; fi
2280            done
2281    
2282          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2283          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1016  while test "x$ck" != xtt ; do Line 2300  while test "x$ck" != xtt ; do
2300    
2301          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2302          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2303                #echo "   " $pname ": need to add :" $dname
2304              in_dis="f"              in_dis="f"
2305              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2306                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1036  while test "x$ck" != xtt ; do Line 2321  while test "x$ck" != xtt ; do
2321          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2322          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2323              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2324              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2325              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2326              exit 1              exit 1
2327          fi          fi
2328          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2329            #i=$(( $i + 1 ))
2330      done      done
2331      ck=$ck"t"      ck=$ck"t"
2332  done    done
2333  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2334    fi
2335  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2336      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2337      if test -d $adr ; then      if test -d $adr ; then
# Line 1059  for i in $PACKAGES ; do Line 2346  for i in $PACKAGES ; do
2346      fi      fi
2347  done  done
2348    
   
2349  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2350  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2351  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2352  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2353  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2354  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2355  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2356  all_pack=  all_pack=
2357    DISABLED_PACKAGES=
2358  for n in $names ; do  for n in $names ; do
2359      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2360          has_pack="f"          has_pack="f"
# Line 1090  for n in $names ; do Line 2365  for n in $names ; do
2365              fi              fi
2366          done          done
2367          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2368              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2369              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2370          fi          fi
2371      fi      fi
2372  done  done
2373  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2374  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2375      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2376      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2377  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2378    
2379  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2380      case $i in      case $i in
2381          aim_v23)          aim_v23)
2382              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2383              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2384              ;;              ;;
2385      esac      esac
2386  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2387    
2388  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
2389    
2390  #endif /* PACKAGES_H */  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
   
 echo "  Adding STANDARDDIRS"  
2391  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2392  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2393      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2394            adr="$ROOTDIR/$d/src"
2395            if test ! -d $adr ; then
2396                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2397                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2398                exit 1
2399            else
2400                SOURCEDIRS="$SOURCEDIRS $adr"
2401            fi
2402            adr="$ROOTDIR/$d/inc"
2403            if test ! -d $adr ; then
2404                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2405                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2406                exit 1
2407            else
2408                INCLUDEDIRS="$INCLUDEDIRS $adr"
2409            fi
2410        done
2411  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2412    
2413  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2414  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2415  CPP_OPTIONS=  CPP_OPTIONS=
2416    CPP_EEOPTIONS=
2417  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2418    names=`ls -1 "$ROOTDIR/pkg"`
2419  for i in $spaths ; do  for i in $spaths ; do
2420      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2421      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2422          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2423          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2424          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2425            for n in $names ; do
2426                test_for_package_in_cpp_options $CPP_OPTIONS $n
2427            done
2428        fi
2429        try="$i/CPP_EEOPTIONS.h"
2430        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2431            echo "    found CPP_EEOPTIONS=\"$try\""
2432            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2433    #**** not yet enabled ****
2434    #        test_for_mpi_in_cpp_eeoptions $try
2435    #**** not yet enabled ****
2436            CPP_EEOPTIONS="$try"
2437      fi      fi
2438  done  done
2439  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2440      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2441      exit 1      exit 1
2442  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2443    
2444  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2445  #  compiler.  #  compiler.
2446  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2447      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2448  fi  fi
2449  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2450    touch adSrcFiles.tmp
2451  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2452      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2453      for j in $list_files ; do      for j in $list_files ; do
2454          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2455      done      done
2456  done  done
2457    if test ! "x"$FS = "x.f" ; then
2458  cat <<EOF > adjoint_sed      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2459  s/call adopen(/call adopen ( mythid,\\      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2460       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2461    
2462  echo  echo
2463  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2464  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2465  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2466      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2467          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2468      fi      fi
2469  done  done
2470    
2471    if test ! "x$DIVA" = x ; then
2472        echo "  Creating the pseudo-MPI include directory"
2473        INCLUDES="-I./mpi_headers $INCLUDES"
2474        rm -rf ./mpi_headers
2475        mkdir -p ./mpi_headers
2476    
2477        if test "x$MPIINCLUDEDIR" = x ; then
2478            if test "x$MPIHOME" = x ; then
2479                MPIHOME='/usr'
2480            fi
2481            MPIINCLUDEDIR='$MPIHOME/include'
2482        fi
2483    
2484        if test -r $MPIINCLUDEDIR/mpif.h ; then
2485            for i in $MPI_HEADER_FILES; do
2486                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2487            done
2488    
2489            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2490        else
2491            echo " We cannot create a copy of mpif.h!"
2492    #       exit -1
2493        fi
2494    fi
2495    
2496  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2497  rm -rf .links.tmp  rm -rf .links.tmp
2498  mkdir .links.tmp  mkdir .links.tmp
2499    touch .links.tmp/foo
2500    if test ! -r ".links.tmp/foo" ; then
2501        echo
2502        echo "ERROR : something is wrong with your directory permissions or"
2503        echo "   your user file-creation mask (\"umask\") since creating a"
2504        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2505        echo "   not working.  Please try setting your umask to something"
2506        echo "   sane such as:"
2507        echo
2508        echo "      umask 0002"
2509        echo
2510        echo "   and please verify that you have the proper permissions for"
2511        echo "   creating sub-directories and then reading files created"
2512        echo "   within them."
2513        echo
2514        exit 1
2515    fi
2516    rm -f .links.tmp/foo
2517    
2518    if test "x$OPENAD" != x ; then
2519        OAD_DONT_COMPILE="/dev/null"
2520        OAD_DONT_TRANSFORM="/dev/null"
2521        OAD_KEEP_ORIGINAL="/dev/null"
2522        OAD_CB2M_FILES="/dev/null"
2523        echo "  looking for dontCompile file:  "
2524        for i in "." $MODS ; do
2525            if test -r $i"/dontCompile" ; then
2526                OAD_DONT_COMPILE=$i"/dontCompile"
2527                echo "     found $OAD_DONT_COMPILE"
2528                break
2529            fi
2530        done
2531        echo "  looking for dontTransform file:  "
2532        for i in "." $MODS ; do
2533            if test -r $i"/dontTransform" ; then
2534                OAD_DONT_TRANSFORM=$i"/dontTransform"
2535                echo "     found $OAD_DONT_TRANSFORM"
2536                break
2537            fi
2538        done
2539        echo "  looking for keepOriginal file:  "
2540        for i in "." $MODS ; do
2541            if test -r $i"/keepOriginal" ; then
2542                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2543                echo "     found $OAD_KEEP_ORIGINAL"
2544                break
2545            fi
2546        done
2547        echo "  looking for cb2mFiles:  "
2548        for i in "." $MODS ; do
2549            if test -r $i"/cb2mFiles" ; then
2550                OAD_CB2M_FILES=$i"/cb2mFiles"
2551                echo "     found $OAD_CB2M_FILES"
2552                break
2553            fi
2554        done
2555        echo "   OpenAD exceptions:  "
2556    fi
2557    
2558  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2559  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2560  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2561  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2562  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2563  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2564  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2565    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2566  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2567  for d in $alldirs ; do  for d in $alldirs ; do
2568      deplist=      deplist=
2569      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2570      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2571        if test "x$OPENAD" != x ; then
2572            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2573        fi
2574      for sf in $sfiles ; do      for sf in $sfiles ; do
2575          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2576              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2577                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2578                  touch .links.tmp/$sf                  case $d/$sf in
2579                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2580                  case $extn in                          ignore_f=t
2581                      F)                          ;;
2582                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2583                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2584                            ;;
2585                      ./FC_NAMEMANGLE.h)
2586                            ignore_f=t
2587                            ;;
2588                      ./BUILD_INFO.h)
2589                            ignore_f=t
2590                            ;;
2591                      ./EMBEDDED_FILES.h)
2592                            ignore_f=t
2593                            ;;
2594                      *)
2595                            #  For the local directory *ONLY*,
2596                            #  ignore all soft-links
2597                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2598                                ignore_f=t
2599                            else
2600                                touch .links.tmp/$sf
2601                                deplist="$deplist $sf"
2602                            fi
2603                            ;;
2604                    esac
2605                    if test "x$ignore_f" = xf ; then
2606                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2607                        case $extn in
2608                          F)
2609                            echo    " \\"  >> F77srclist.tmp
2610                            printf " $sf" >> F77srclist.tmp
2611                            if test "x$OPENAD" != x ; then
2612                                basename=${sf%%.F}
2613                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2614                                if test -z "$isAD" ; then
2615                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2616                                    if test -z "$toBeIgnored" ; then
2617                                        echo    " \\"  >> nonADF77srclist.tmp
2618                                        printf " $sf" >> nonADF77srclist.tmp
2619                                    else
2620                                        echo "    not to be compiled   :  $sf"
2621                                    fi
2622                                else # file is initially listed as an AD file we want to exclude it
2623                                     # or we want to retain the untransformed version
2624                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2625                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2626                                    if test -n "$notToBeTransformed"; then
2627                                        echo "    not to be transformed:  $sf"
2628                                    fi
2629                                    if test -n "$untransformedVersionToBeKept" ; then
2630                                        echo "    original to be kept  :  $sf"
2631                                    fi
2632                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2633                                        echo    " \\"  >> nonADF77srclist.tmp
2634                                        printf " $sf" >> nonADF77srclist.tmp
2635                                    fi
2636                                fi
2637                            fi
2638                          ;;                          ;;
2639                      F90)                      F90)
2640                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2641                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2642                          ;;                          ;;
2643                      c)                      c)
2644                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2645                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2646                          ;;                          ;;
2647                      h)                      h)
2648                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2649                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2650                          ;;                          ;;
2651                      flow)                      flow)
2652                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.tmp
2653                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.tmp
2654                          ;;                          ;;
2655                  esac                     esac
2656                    fi
2657              fi              fi
2658          fi          fi
2659      done      done
2660      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2661          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2662            echo "" >> srclinks.tmp
2663          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2664          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2665          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2666    # This may happen when make thinks that a header file has to be "remade"
2667    # because a module it depends on has changed.  In this case we do nothing.
2668            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2669          fi
2670      fi      fi
2671  done  done
2672  rm -rf .links.tmp  rm -rf .links.tmp
2673  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2674  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2675  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2676  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2677  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2678    echo "" >> ad_flow_files.tmp
2679    
2680    CMDLINE=$0
2681    for xx in "$@" ; do nw=`echo $xx | wc -w`
2682        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2683                            else CMDLINE="$CMDLINE '$xx'" ; fi
2684    done
2685    
2686  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2687      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2688  fi  fi
2689  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2690  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1286  echo "#    $MACHINE" >> $MAKEFILE Line 2692  echo "#    $MACHINE" >> $MAKEFILE
2692  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2693  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2694  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2695  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2696  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2697  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2698    
2699  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2700  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2701  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2702    
2703  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2704  #  #
2705    # OPTFILE="$OPTFILE"
2706    #
2707  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2708  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2709  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1315  cat >>$MAKEFILE <<EOF Line 2723  cat >>$MAKEFILE <<EOF
2723  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2724    
2725  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2726  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2727  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2728  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2729  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
# Line 1328  EXE_AD      = ${EXE_AD} Line 2736  EXE_AD      = ${EXE_AD}
2736  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2737  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2738    
2739    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2740    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2741    
2742    # These files are created by Makefile
2743    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2744  EOF  EOF
2745    
2746  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2747        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2748    else
2749        echo "EMBEDDED_FILES = " >>$MAKEFILE
2750    fi
2751    
2752  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2753  # Unix ln (link)  # Unix ln (link)
2754  LN = ${LN}  LN = ${LN}
# Line 1345  KPP = ${KPP} Line 2762  KPP = ${KPP}
2762  FC = ${FC}  FC = ${FC}
2763  # Fortran compiler  # Fortran compiler
2764  F90C = ${F90C}  F90C = ${F90C}
2765    # C compiler
2766    CC = ${CC}
2767  # Link editor  # Link editor
2768  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2769    
2770  # Defines for CPP  # Defines for CPP
2771  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1356  INCLUDES = ${INCLUDES} Line 2775  INCLUDES = ${INCLUDES}
2775  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2776  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2777  # Optim./debug for FC  # Optim./debug for FC
2778  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2779  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2780  # Optim./debug for FC  # Optim./debug for FC
2781  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2782  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2783    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2784  # Flags for CC  # Flags for CC
2785  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2786  # Files that should not be optimized  # Files that should not be optimized
2787  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2788  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2789  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2790  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2791  # Name of the Mekfile  # Name of the makefile
2792  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2793    
2794  EOF  EOF
2795    
2796  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2797  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2798  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2799  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2800  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2801  echo               >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2802    
2803  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
 rm -f ad_flow_files.inc  
2804    
2805  cat >>$MAKEFILE <<EOF  echo >> $MAKEFILE
2806    
2807  .SUFFIXES:  # add definitions for preprocessed sources
2808  .SUFFIXES: .o .f .p .F .c .F90 .f90  # and note that not all systems allow case sensitive extensions
2809    # hence the $FS and $FS90 here.
2810    # for fixed format f90 files we use ff90 or FF90 resp
2811    # but these are not expected to be the original source files
2812    
2813    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2814    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2815    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2816    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2817    echo >> $MAKEFILE
2818    echo '.SUFFIXES:' >> $MAKEFILE
2819    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2820    
2821    cat >>$MAKEFILE <<EOF
2822    
2823  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2824  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2825            @echo Creating \$@ ...
2826          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2827    
2828  depend:  depend:
2829          @make links          @make -f \$(MAKEFILE) links
2830          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2831          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2832            -rm -f makedepend.out
2833    
2834    lib: libmitgcmuv.a
2835    
2836    libmitgcmuv.a: \$(OBJFILES)
2837            ar rcv libmitgcmuv.a \$(OBJFILES)
2838            ar d   libmitgcmuv.a main.o
2839    
2840  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  obj: \$(OBJFILES)
2841    
2842  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2843    
2844    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2845    
2846  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2847          @printf 'running ... '          @printf 'running ... '
2848          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2849    
2850    # remove most of the files that "make" generates
2851  clean:  clean:
2852          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2853          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
2854            -rm -rf *.$FS *.flowdir
2855            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2856    
2857    # remove most of the files that "make" and "make depend" generate
2858  Clean:  Clean:
2859          @make clean          @make -f \$(MAKEFILE) clean
2860          @make cleanlinks          @make -f \$(MAKEFILE) cleanlinks
2861          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2862            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2863            -rm -f genmake_warnings genmake_errors make.log
2864    
2865    # remove also the executable, files that "genmake2" generates (except Makefile)
2866    #         and output from a run (plus log files from testreport)
2867  CLEAN:  CLEAN:
2868          @make Clean          @make -f \$(MAKEFILE) Clean
2869            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2870            -rm -f $LOGFILE genmake_state genmake_*optfile
2871            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2872          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2873          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2874          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2875          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STD* *diagnostics.log datetime
2876            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2877            -rm -rf mnc_test_*
2878    
 #eh3 Makefile: makefile  
2879  makefile:  makefile:
2880          ${0} $@          $THIS_SCRIPT $G2ARGS
2881  cleanlinks:  cleanlinks:
2882          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2883    
2884  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2885  .F.f:  ${PACKAGES_DOT_H}:
2886            @echo Creating \$@ ...
2887            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2888    AD_CONFIG.h:
2889            @echo Creating \$@ ...
2890            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2891    FC_NAMEMANGLE.h:
2892            @echo Creating \$@ ...
2893            echo "$FC_NAMEMANGLE" > \$@
2894    
2895    BUILD_INFO.h:
2896            @echo Creating \$@ ...
2897    EOF
2898    
2899    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2900    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2901    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2902    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2903    
2904    if test "x$EMBED_SRC" = xt ; then
2905        cat >>$MAKEFILE <<EOF
2906    
2907    decode_files.o : EMBEDDED_FILES.h
2908    
2909    ##  \$(F77_PP_SRC_FILES)
2910    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2911            @echo Creating \$@ ...
2912            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2913            -rm -f all_fF.tar.gz
2914            -gzip all_fF.tar
2915    
2916    EMBEDDED_FILES.h : all_fF.tar.gz
2917            @echo Creating \$@ ...
2918            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2919    
2920    EOF
2921    fi
2922    
2923    cat >>$MAKEFILE <<EOF
2924    
2925    # The normal chain of rules is (  .F - .$FS - .o  )
2926    
2927    ## This nullifies any default implicit rules concerning these two file types:
2928    ## %.o : %.F
2929    
2930    .F.$FS:
2931          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2932  .f.o:  .$FS.o:
2933            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2934    .F.o:
2935          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2936  .F90.f90:  .F90.$FS90:
2937          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2938  .f90.o:  .FF90.f$FS90:
2939            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2940    .$FS90.o:
2941          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2942    .f$FS90.o:
2943            cp \$< \$(basename  \$<).f90
2944            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2945  .c.o:  .c.o:
2946          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2947    .flow.flowdir:
2948            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2949    
2950  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2951  .F.p:  .F.p:
2952          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2953  .p.f:  .p.$FS:
2954          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2955    
2956    EOF
2957    
2958  #=========================================  #=========================================
2959  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
2960    #===  for TAMC/TAF  ======================
2961    
2962    if test "x$OPENAD" = x ; then
2963    
2964    cat >>$MAKEFILE <<EOF
2965    
2966  TAMC           = ${TAMC}  TAMC           = ${TAMC}
2967  TAF            = ${TAF}  TAF            = ${TAF}
# Line 1461  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 2976  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
2976  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2977  for i in $ad_vars ; do  for i in $ad_vars ; do
2978      name=$i      name=$i
2979      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
2980      eval $t1      eval $t1
2981      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
2982      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2983  done  done
2984    
2985  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2986  echo >> $MAKEFILE  echo >> $MAKEFILE
2987  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2988  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
2989  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2990      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2991      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2992  done  done
2993  echo >> $MAKEFILE  echo >> $MAKEFILE
2994  rm -f ad_files  rm -f adSrcFiles.tmp
2995    
2996  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2997    
2998  # ... AD ...  # ... AD ...
2999  adall: ad_taf  adall: \$(EXE_AD)
3000  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3001  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3002    
3003  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
3004            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3005          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3006          @make \$(F77FILES)          -rm -f ad_config.template
3007          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3008          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @make -f \$(MAKEFILE) \$(FLOFILES)
3009            cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3010  ad_taf_output.f: ad_input_code.f  
3011          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
3012          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3013            ls -l ad_input_code_ad.$FS
3014  ad_taf: ad_taf_output.o \$(OBJFILES)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3015          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  
3016    adtafonly:
3017  ad_tamc_output.f: ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3018          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          ls -l ad_input_code_ad.$FS
3019          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3020    
3021    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
3022            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3023    
3024    ad_tamc_output.$FS: ad_input_code.$FS
3025            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3026            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3027    
3028  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3029          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3030    
3031    adonlyfwd:
3032            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3033    
3034    adtrick:
3035            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3036    
3037    adobj: ad_taf_output.o \$(OBJFILES)
3038    
3039  # ... FTL ...  # ... FTL ...
3040  ftlall: ftl_taf  ftlall: \$(EXE_FTL)
3041  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3042  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3043    
3044  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
3045            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template
3046          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
3047          @make \$(F77FILES)          -rm -f ftl_config.template
3048          @make \$(AD_FLOW_FILES)          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3049          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          @make -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3050            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
3051  ftl_taf_output.f: ftl_input_code.f  
3052          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
3053          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3054            ls -l ftl_input_code_ftl.$FS
3055  ftl_taf: ftl_taf_output.o \$(OBJFILES)          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3056          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  
3057    ftltafonly:
3058  ftl_tamc_output.f: ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3059          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          ls -l ftl_input_code_ftl.$FS
3060          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3061    
3062    \${EXE_FTL}: ftl_taf_output.o \$(OBJFILES)
3063            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3064    
3065    ftl_tamc_output.$FS: ftl_input_code.$FS
3066            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3067            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3068    
3069  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3070          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3071    
3072  # ... SVD ...  # ... SVD ...
3073  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3074  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3075            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3076    svdall: svd_touch svd_taf
3077    
3078    svd_taf: \$(OBJFILES)
3079            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3080    
3081            @echo "--->>> Only COMPILE svd code! <<<---"
3082            @echo "--->>> Assumes you previously <<<---"
3083            @echo "--->>> did make svdtaf        <<<---"
3084    
3085    svd_touch:
3086            @echo "--->>> Only COMPILE svd code! <<<---"
3087            @echo "--->>> Assumes you previously <<<---"
3088            @echo "--->>> did make svdtaf        <<<---"
3089            touch ad_taf_output.$FS ftl_taf_output.$FS
3090            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3091            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3092            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template
3093            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
3094            -rm -f ftl_config.template
3095    
3096    EOF
3097    
3098    fi
3099    
3100  svd_input_code.f: \$(SRCFILES)  #===  for OpenAD  ========================
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
3101    
3102  svd_taf: svd_taf_output.o \$(OBJFILES)  if test "x$OPENAD" != x ; then
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
3103    
3104    # ============ begin OpenAD specific section ==============
3105    
3106  #=========================================  cat >>$MAKEFILE <<EOF
3107    
3108    # all the source files linked from the various locations:
3109    ALL_LINKED_FILES= \
3110    \$(F77_SRC_FILES) \
3111    \$(C_SRC_FILES) \
3112    \$(H_SRC_FILES) \
3113    \$(F90_SRC_FILES) \
3114    \$(SPECIAL_FILES)
3115    
3116    ifndef OPENADROOT
3117      \$(error "Error:  environment variable OPENADROOT not defined!")
3118    endif
3119    
3120    ifndef XAIFSCHEMAROOT
3121      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3122    endif
3123    
3124    ifndef XAIFBOOSTERROOT
3125      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3126    endif
3127    
3128    EOF
3129    
3130    echo "  Add the source list for common block to module conversion "
3131    echo >> $MAKEFILE
3132    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3133    for i in `cat ${OAD_CB2M_FILES}` ; do
3134      echo    " \\" >> $MAKEFILE
3135      printf " $i" >> $MAKEFILE
3136    done
3137    echo >> $MAKEFILE
3138    
3139    echo "  Add the source list for AD code generation"
3140    echo >> $MAKEFILE
3141    printf "AD_FILES = " >> $MAKEFILE
3142    for i in `cat ${OAD_CB2M_FILES}` ; do
3143      echo    " \\" >> $MAKEFILE
3144      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3145    done
3146    AD_FILES=`cat adSrcFiles.tmp`
3147    for i in $AD_FILES ; do
3148      basename=${i%%.f}
3149      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3150      if test -z "$toBeIgnored" ; then
3151        echo    " \\" >> $MAKEFILE
3152        printf " $i" >> $MAKEFILE
3153      fi
3154    done
3155    echo >> $MAKEFILE
3156    rm -f adSrcFiles.tmp
3157    
3158    cat >>$MAKEFILE <<EOF
3159    
3160    adAll: \$(EXE_AD)
3161    .PHONY: adAll
3162    
3163    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3164    
3165    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3166    
3167    .PHONY: adDepend
3168    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3169            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3170            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3171            -rm -f makedepend.out
3172    
3173    OPENAD_SUPPORT_F90_SRC_FILES = \
3174    w2f__types.F90 \
3175    OAD_active.F90 \
3176    OAD_cp.F90 \
3177    OAD_rev.F90 \
3178    OAD_tape.F90
3179    
3180    OPENAD_SUPPORT_C_SRC_FILES = \
3181    iaddr.c \
3182    timeRatio.c
3183    
3184    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3185            cat \$^ > \$@
3186    
3187    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3188            cat \$^ > \$@
3189    
3190    f95_test.out: f95_test_mods.f90 f95_test.f90
3191            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3192            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3193    
3194    # the file included below is created by the
3195    # postProcessor and its inclusion sets the
3196    # variable POSTPROCESSEDFILES
3197    # used below. Because the file is made during
3198    # make it won't be read until the second (recursive)
3199    # invocation in the rule below
3200    -include postProcess.make
3201    
3202    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3203    
3204    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3205    
3206    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3207    ifeq (\$(MAKELEVEL),0)
3208            \$(MAKE) adAll
3209    else
3210            touch \$@
3211    endif
3212    
3213    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3214    ifeq (\$(MAKELEVEL),1)
3215            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3216    else
3217            touch \$@
3218    endif
3219    
3220    # makefile debug rule
3221    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3222    .PHONY: openad
3223    
3224    # create the module files
3225    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3226            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3227    
3228    # create the header files
3229    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3230            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3231    
3232    # change everybody else to use the new module files:
3233    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3234            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3235    
3236    # makefile debug rule
3237    small_f: \$(CB2M_F90_PP_SRC_FILES)
3238    .PHONY: small_f
3239    
3240    ad_output.txt: \$(EXE_AD)
3241            @printf 'linking data files ... '
3242            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3243            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3244            @printf 'running ... '
3245            @./\$(EXE_AD) > \$@
3246    
3247    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3248    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3249            cat \$^ > \$@
3250    
3251    # strip all comments and blanks to reduce
3252    # the file size in order to reduce perl's memory requirements
3253    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3254            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3255    
3256    # mfef90 preprocessing
3257    # expand statement functions
3258    # expose mfef90 specific substring handling
3259    # add the w2f__types module
3260    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3261            ./mfef90 -r8 -z -F -N132 \$<
3262            mv \$<.B \$(basename \$<).B
3263            ./whirl2f -openad \$(basename \$<).B
3264            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3265    
3266    # canonicalizer
3267    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3268            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3269    
3270    # F -> WHIRL
3271    # note that the canonicalized version cuts off at col 72
3272    # doing this also for string constants which is ok as long
3273    # as we are in fixed mode and cut of exactly there.
3274    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3275    # characters respectively.
3276    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3277            ./mfef90 -r8 -z -F \$<
3278            mv \$<.B \$@
3279    
3280    # WHIRL -> XAIF
3281    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3282            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3283    
3284    # XAIF -> XAIF'
3285    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3286            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3287    
3288    # XAIF' -> WHIRL'
3289    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3290            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3291    
3292    # WHIRL' -> F'
3293    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3294            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3295    
3296    # insert template directives
3297    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3298            ../OAD_support/insertTemplateDir.bash \$< \$@
3299    
3300    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3301    # postprocess F'
3302    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3303            # the target is a placeholder to signal execution of the rule
3304            touch \$@
3305            # this step also creates the file postProcess.make but we cannot
3306            # name it as the target or else make will try to remake it for
3307            # the include directive above for any rule, e.g. make clean
3308            ./postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3309    
3310    # setup some links
3311    %.xsd:
3312            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3313    
3314    mfef90:
3315            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3316    
3317    # link the support files:
3318    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3319            \$(LN) ../OAD_support/\$@ .
3320    
3321    whirl2xaif xaif2whirl:
3322            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3323    
3324    preProcess.py postProcess.py:
3325            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3326    
3327    whirl2f whirl2f_be:
3328            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3329    
3330    oadDriver:
3331            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3332    
3333    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3334    
3335    # ============ end OpenAD specific section ==============
3336    
3337  EOF  EOF
3338    
3339    fi
3340    
3341    #=========================================
3342    
3343  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3344      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3345  fi  fi
# Line 1565  for i in $KPPFILES ; do Line 3351  for i in $KPPFILES ; do
3351      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3352          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3353      fi      fi
3354      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3355  done  done
3356    
3357  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1575  for i in $NOOPTFILES ; do Line 3361  for i in $NOOPTFILES ; do
3361      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3362          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3363      fi      fi
3364      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3365      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3366  done  done
3367    
# Line 1588  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3374  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3374    
3375  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3376    
3377  #  Write the "template" files for the adjoint builds  # Create special header files
3378  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3379  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
3380  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3381  C    unless you are CERTAIN that you know what you are doing.  else
3382        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3383  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
3384  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
3385  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
3386  EOF      else
3387  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3388  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3389  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
3390  C    unless you are CERTAIN that you know what you are doing.  fi
3391    if test ! -f AD_CONFIG.h ; then
3392  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3393  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
   
3394    
3395  #  Write the "state" for future records  #  Write the "state" for future records
3396  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3397      echo -n "" > genmake_state      printf "" > genmake_state
3398      for i in $gm_state ; do      for i in $gm_state ; do
3399          t1="t2=\$$i"          t1="t2=\$$i"
3400          eval $t1          eval $t1
3401          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3402      done      done
3403  fi  fi

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