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revision 1.33 by adcroft, Thu Nov 13 15:10:40 2003 UTC revision 1.45 by heimbach, Mon Nov 24 15:08:24 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #!/bin/sh
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 76  find_possible_configs()  { Line 76  find_possible_configs()  {
76      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
77      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
78      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
79            
80      echo "test" > test      echo "test" > test
81      ln -s ./test link      ln -s ./test link
# Line 216  get_pdepend_list()  { Line 205  get_pdepend_list()  {
205      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
206          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
207          > ./.pd_tmp          > ./.pd_tmp
208      source ./.pd_tmp      . ./.pd_tmp
209      rm -f ./.pd_tmp      rm -f ./.pd_tmp
210    
211      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 225  get_pdepend_list()  { Line 214  get_pdepend_list()  {
214    
215  #  Explain usage  #  Explain usage
216  usage()  {  usage()  {
217      echo  cat <<EOF
218      echo "Usage: "$0" [OPTIONS]"  
219      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
220      echo    where [OPTIONS] can be:
221      echo "    -help | --help | -h | --h"  
222      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
223      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
224      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
225      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
226      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
227      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
228      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
229      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
230      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
231      echo "    -makefile NAME | -mf NAME"  
232      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
233      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
234      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
235      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
236      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
237      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
238      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
239      echo "    -disable NAME | --disable NAME"  
240      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
241      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
242      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
243      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
244      echo "      -standarddirs=NAME | --standarddirs=NAME"  
245      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
246      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
247  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
248  #    echo "      -cpp=NAME | --cpp=NAME"  
249      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
250      echo "      -fc=NAME | --fc=NAME"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
251      echo "    -[no]ieee | --[no]ieee"            Specify the location of the MITgcm ROOTDIR as "NAME".
252      echo "    -[no]mpi | --[no]mpi"            By default, genamke will try to find the location by
253      echo "    -[no]jam | --[no]jam"            looking in parent directories (up to the 5th parent).
254      echo  
255      echo "  and NAME is a string such as:"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
256      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
257      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            Here, "NAME" specifies a list of directories that are
258      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"            used for additional source code.  Files found in the
259      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"            "mods list" are given preference over files of the same
260      echo            name found elsewhere.
261      echo "  which, depending upon your shell, may need to be single-quoted"  
262      echo "  if it contains spaces, dashes, or other special characters."      -disable NAME | --disable NAME
263          -disable=NAME | --disable=NAME
264              Here "NAME" specifies a list of packages that we don't
265              want to use.  If this violates package dependencies,
266              genamke will exit with an error message.
267    
268        -enable NAME | --enable NAME
269          -enable=NAME | --enable=NAME
270              Here "NAME" specifies a list of packages that we wish
271              to specifically enable.  If this violates package
272              dependencies, genamke will exit with an error message.
273    
274        -standarddirs NAME | --standarddirs NAME
275          -standarddirs=NAME | --standarddirs=NAME
276              Here, "NAME" specifies a list of directories to be
277              used as the "standard" code.
278    
279        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
280          -fc=NAME | --fc=NAME
281              Use "NAME" as the fortran compiler.  By default, genmake
282              will search for a working compiler by trying a list of
283              "usual suspects" such as g77, f77, etc.
284    
285        -[no]ieee | --[no]ieee
286              Do or don't use IEEE numerics.  Note that this option
287              *only* works if it is supported by the OPTFILE that
288              is being used.
289    
290      While it is most often a single word, the "NAME" variables specified
291      above can in many cases be a space-delimited string such as:
292    
293        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
294        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
295        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
296    
297      which, depending upon your shell, may need to be single-quoted.
298    
299      For more detailed genmake documentation, please see:
300    
301        http://mitgcm.org/devel_HOWTO/
302    
303    EOF
304    
305      exit 1      exit 1
306  }  }
307    
# Line 281  get_fortran_c_namemangling()  { Line 312  get_fortran_c_namemangling()  {
312      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
313  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
314  EOF  EOF
315      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
316      RETVAL=$?      RETVAL=$?
317      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
318          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
319          echo          cat <<EOF>> genmake_errors
320          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
321          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
322          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
323    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
324    EOF
325          return 1          return 1
326      fi      fi
327      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
328      RETVAL=$?      RETVAL=$?
329      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
330          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
331          echo          cat <<EOF>> genmake_warnings
332          echo "WARNING: The \"nm\" command failed."  
333          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
334          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
335    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
336    EOF
337          return 1          return 1
338      fi      fi
339      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.f <<EOF
# Line 308  EOF Line 342  EOF
342        call tsub( string )        call tsub( string )
343        end        end
344  EOF  EOF
345      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
346      RETVAL=$?      RETVAL=$?
347      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
348          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
349          echo          cat <<EOF>> genmake_warnings
350          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
351          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
352          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
353    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
354    EOF
355          return 1          return 1
356      fi      fi
357      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
358      RETVAL=$?      RETVAL=$?
359      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
360          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
361          echo          cat <<EOF>> genmake_warnings
362          echo "WARNING: The \"nm\" command failed."  
363          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
364          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
365    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
366    EOF
367          return 1          return 1
368      fi      fi
369    
# Line 353  EOF Line 390  EOF
390      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
391  }  }
392    
393    
394    check_HAVE_CLOC()  {
395        get_fortran_c_namemangling
396        cat <<EOF > genmake_tc_1.c
397    $FC_NAMEMANGLE
398    #include <stdio.h>
399    #include <stdlib.h>
400    #include <unistd.h>
401    #include <assert.h>
402    #include <sys/time.h>
403    void FC_NAMEMANGLE(cloc) ( double *curtim )
404    {
405     struct timeval tv1;
406     gettimeofday(&tv1 , (void *)NULL );
407     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
408     *curtim = *curtim/1.E6;
409    }
410    EOF
411        make genmake_tc_1.o >> genmake_tc.log 2>&1
412        RET_C=$?
413        cat <<EOF > genmake_tc_2.f
414          program hello
415          Real*8 wtime
416          external cloc
417          call cloc(wtime)
418          print *," HELLO WORLD", wtime
419          end program hello
420    EOF
421        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
422        RET_F=$?
423        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
424        RETVAL=$?
425        if test "x$RETVAL" = x0 ; then
426            HAVE_CLOC=t
427            DEFINES="$DEFINES -DHAVE_CLOC"
428        fi
429        rm -f genmake_tc*
430    }
431    
432    
433  #  Set defaults here  #  Set defaults here
434  COMMANDL="$0 $@"  COMMANDL="$0 $@"
435    
# Line 388  NOOPTFLAGS= Line 465  NOOPTFLAGS=
465  HAVE_SYSTEM=  HAVE_SYSTEM=
466  HAVE_FDATE=  HAVE_FDATE=
467  FC_NAMEMANGLE=  FC_NAMEMANGLE=
468    HAVE_CLOC=
469    
470  MODS=  MODS=
471  TOOLSDIR=  TOOLSDIR=
# Line 426  TAMC_EXTRA= Line 504  TAMC_EXTRA=
504    
505    
506  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
507  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
508  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
509    
510  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
# Line 444  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 522  gm_s12="TAF_EXTRA TAMC_EXTRA"
522  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
523  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
524    
525    cat <<EOF
526    
527    GENMAKE :
528    
529    A program for GENerating MAKEfiles for the MITgcm project.  For a
530    quick list of options, use "genmake -h" or for more detail see:
531    
532      http://mitgcm.org/devel_HOWTO/
533    
534    EOF
535    
 echo  
536  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
537  gm_local="genmake_local"  gm_local="genmake_local"
538  for i in . $MODS ; do  for i in . $MODS ; do
539      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
540          source $i/$gm_local          . $i/$gm_local
541          break          break
542      fi      fi
543  done  done
544  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
545  if test -e $gm_local ; then  if test -e $gm_local ; then
546      echo "using $gm_local"      echo "using $gm_local"
547      source $gm_local      . $gm_local
548      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
549      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
550  else  else
# Line 524  for ac_option ; do Line 611  for ac_option ; do
611          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
612              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
613                    
614          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
615              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
616          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
617              PLATFORM=$ac_optarg ;;              echo
618                usage
619                ;;
620                    
621          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
622              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 554  for ac_option ; do Line 643  for ac_option ; do
643          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
644              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
645    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
646  #           -cpp | --cpp)  #           -cpp | --cpp)
647  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
648  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 574  for ac_option ; do Line 658  for ac_option ; do
658          -noieee | --noieee)          -noieee | --noieee)
659              IEEE= ;;              IEEE= ;;
660                    
661          -mpi | --mpi)  #       -jam | --jam)
662              MPI=true ;;  #           JAM=1 ;;
663          -nompi | --nompi)  #       -nojam | --nojam)
664              MPI= ;;  #           JAM=0 ;;
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
665                    
666          -ds | --ds)          -ds | --ds)
667              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 661  fi Line 740  fi
740  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
741      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
742          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
743          source "$OPTFILE"          . "$OPTFILE"
744          RETVAL=$?          RETVAL=$?
745          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
746              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
# Line 688  fi Line 767  fi
767  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
768      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
769          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
770          source "$AD_OPTFILE"          . "$AD_OPTFILE"
771          RETVAL=$?          RETVAL=$?
772          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
773              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
# Line 704  if test "x${AD_OPTFILE}" != xNONE ; then Line 783  if test "x${AD_OPTFILE}" != xNONE ; then
783      fi      fi
784  fi  fi
785    
786  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
787  #  and abort!  #  either set defaults or complain and abort!
788  if test "x$FC" = x ; then  if test "x$FC" = x ; then
789      cat <<EOF 1>&2      cat <<EOF 1>&2
790    
# Line 722  fi Line 801  fi
801  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
802      CPP="cpp"      CPP="cpp"
803  fi  fi
804    if test "x$MAKE" = x ; then
805        MAKE="make"
806    fi
807  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
808  RETVAL=$?  RETVAL=$?
809  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 741  fi Line 823  fi
823  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
824      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
825  fi  fi
826    if test "x$LN" = x ; then
827        LN="ln -s"
828    fi
829    echo "test" > genmake_test_ln
830    $LN genmake_test_ln genmake_tlink
831    RETVAL=$?
832    if test "x$RETVAL" != x0 ; then
833        cat <<EOF 1>&2
834    
835    Error: The command "ln -s" failed -- please specify a working soft-link
836      command in the optfile.
837    
838    EOF
839        exit 1
840    fi
841    rm -f genmake_test_ln genmake_tlink
842    
843    
844  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 783  else Line 881  else
881  fi  fi
882  rm -f genmake_tcomp*  rm -f genmake_tcomp*
883    
884  echo "  The name mangling convention for $FC is...  "  echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
885  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  check_HAVE_CLOC
886  if test "x$FC_NAMEMANGLE" = x ; then  if test "x$HAVE_CLOC" != x ; then
887      get_fortran_c_namemangling      echo "yes"
888    else
889        echo "no"
890  fi  fi
 echo "    '$FC_NAMEMANGLE'"  
891  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template
892  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1
893  RETVAL=$?  RETVAL=$?
894  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
895      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h
896  fi  fi
897    rm -f genmake_t*
898    
899    
900  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
# Line 841  fi Line 941  fi
941  if test "x$S64" = x ; then  if test "x$S64" = x ; then
942      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
943  fi  fi
944    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
945    
946  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
947    
# Line 849  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 950  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
950  #  they appear as regular source code  #  they appear as regular source code
951  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
952      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
953      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
954      RETVAL=$?      RETVAL=$?
955      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
956          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 886  if test ! "x${RETVAL}" = x0 ; then Line 987  if test ! "x${RETVAL}" = x0 ; then
987      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
988      exit 1      exit 1
989  fi  fi
990  source ./.pd_tmp  . ./.pd_tmp
991  rm -f ./.pd_tmp  rm -f ./.pd_tmp
992    
993  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
994  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
995  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
996  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
997  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
998      for i in "." $MODS ; do      for i in "." $MODS ; do
999          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 905  if test "x${PDEFAULT}" = x ; then Line 1006  if test "x${PDEFAULT}" = x ; then
1006      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1007  fi  fi
1008  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1009      echo "default packages file disabled"      echo "    default packages file disabled"
1010  else  else
1011      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1012          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1013      else      else
1014          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1015          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1016          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1017          RETVAL=$?          RETVAL=$?
# Line 1065  EOF Line 1165  EOF
1165  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1166  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1167  all_pack=  all_pack=
1168    DISABLED_PACKAGES=
1169  for n in $names ; do  for n in $names ; do
1170      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1171          has_pack="f"          has_pack="f"
# Line 1077  for n in $names ; do Line 1178  for n in $names ; do
1178          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1179              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1180              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"
1181                DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1182          fi          fi
1183      fi      fi
1184  done  done
# Line 1084  cat <<EOF >>$PACKAGES_DOT_H".tmp" Line 1186  cat <<EOF >>$PACKAGES_DOT_H".tmp"
1186    
1187  C  Packages enabled by genmake:  C  Packages enabled by genmake:
1188  EOF  EOF
1189    ENABLED_PACKAGES=
1190  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1191      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1192      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      echo "#define $def" >> $PACKAGES_DOT_H".tmp"
1193        ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1194  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1195    
1196  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
# Line 1179  for i in $SOURCEDIRS ; do Line 1283  for i in $SOURCEDIRS ; do
1283      done      done
1284  done  done
1285    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
   
1286  echo  echo
1287  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1288  echo "  setting INCLUDES"  echo "  setting INCLUDES"
# Line 1220  for d in $alldirs ; do Line 1312  for d in $alldirs ; do
1312      for sf in $sfiles ; do      for sf in $sfiles ; do
1313          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1314              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1315                    case $d/$sf in
1316                      ./$PACKAGES_DOT_H)
1317                            ;;
1318                      ./AD_CONFIG.h)
1319                            ;;
1320                      ./FC_NAMEMANGLE.h)
1321                            ;;
1322                      *)
1323                            touch .links.tmp/$sf
1324                            deplist="$deplist $sf"
1325                            ;;
1326                    esac
1327                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1328                  case $extn in                  case $extn in
1329                      F)                      F)
1330                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 1313  EXE_AD      = ${EXE_AD} Line 1415  EXE_AD      = ${EXE_AD}
1415  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1416  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1417    
1418    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1419    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1420    
1421  EOF  EOF
1422    
1423  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1377  cat >>$MAKEFILE <<EOF Line 1482  cat >>$MAKEFILE <<EOF
1482  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1483    
1484  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1485  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): links \$(OBJFILES)
1486            @echo Creating \$@ ...
1487          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1488  depend:  depend:
1489          @make links          @make links
1490          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1491          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1492    
1493  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) ${PACKAGES_DOT_H} AD_CONFIG.h
1494    
1495  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1496    
# Line 1393  output.txt: \$(EXECUTABLE) Line 1499  output.txt: \$(EXECUTABLE)
1499          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1500    
1501  clean:  clean:
1502          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
1503  Clean:  Clean:
1504          @make clean          @make clean
1505          @make cleanlinks          @make cleanlinks
1506          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f ${PACKAGES_DOT_H} AD_CONFIG.h
1507            -rm -f Makefile.bak genmake_state genmake_*optfile genmake_warnings make.log
1508  CLEAN:  CLEAN:
1509          @make Clean          @make Clean
1510          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1408  CLEAN: Line 1514  CLEAN:
1514    
1515  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1516  makefile:  makefile:
1517          ${0} $@          $THIS_SCRIPT $@
1518  cleanlinks:  cleanlinks:
1519          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1520    
1521    # Special targets
1522    ${PACKAGES_DOT_H}:
1523            @echo Creating \$@ ...
1524            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warngin - this file is automatically generated - do NOT edit" "Enabled packages:" \$(ENABLED_PACKAGES) " " "Disabled packages:" \$(DISABLED_PACKAGES) > \$@
1525    AD_CONFIG.h:
1526            @echo Creating \$@ ...
1527            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1528    
1529  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1530  .F.f:  .F.f:
1531          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1470  adall: ad_taf Line 1584  adall: ad_taf
1584  adtaf: ad_taf_output.f  adtaf: ad_taf_output.f
1585  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1586    
1587  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: links \$(AD_FILES) \$(HEADERFILES)
1588            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1589          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1590            -rm -f ad_config.template
1591          @make \$(F77FILES)          @make \$(F77FILES)
1592          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1593          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1594    
1595  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1596          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1597          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1598    
1599    adtafonly:
1600            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1601            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1602    
1603  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1604          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1605    
1606  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1607          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1608          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1609    
1610  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1611          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
# Line 1496  ftlall: ftl_taf Line 1616  ftlall: ftl_taf
1616  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.f
1617  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1618    
1619  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: links \$(AD_FILES) \$(HEADERFILES)
1620            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1621          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1622            -rm -f ftl_config.template
1623          @make \$(F77FILES)          @make \$(F77FILES)
1624          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1625          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1626    
1627  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
1628          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1629          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1630    
1631    ftltafonly:
1632            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1633            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1634    
1635  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1636          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1637    
1638  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1639          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1640          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1641    
1642  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1643          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1644    
1645    
1646  # ... SVD ...  # ... SVD ...
1647  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
1648  svd_taf_f: svd_taf_output.f  svdall: svd_taf
   
 svd_input_code.f: \$(SRCFILES)  
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
1649    
1650  svd_taf: svd_taf_output.o \$(OBJFILES)  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1651          \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1652    
1653    
1654  #=========================================  #=========================================

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