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revision 1.31 by edhill, Wed Nov 12 21:14:57 2003 UTC revision 1.71 by edhill, Wed Mar 10 23:34:04 2004 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 73  find_possible_configs()  { Line 78  find_possible_configs()  {
78      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
79      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
86            
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 100  find_possible_configs()  {
100          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
101      fi      fi
102    
103        #  The "original" makedepend is part of the Imake system that is
104        #  most often distributed with XFree86 or with an XFree86 source
105        #  package.  As a result, many machines (eg. generic Linux) do not
106        #  have a system-default "makedepend" available.  For those
107        #  systems, we have two fall-back options:
108        #
109        #    1) a makedepend implementation shipped with the cyrus-imapd
110        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
111        #
112        #    2) a known-buggy xmakedpend shell script
113        #
114        #  So the choices are, in order:
115        #
116        #    1) use the user-specified program
117        #    2) use a system-wide default
118        #    3) locally build and use the cyrus implementation
119        #    4) fall back to the buggy local xmakedpend script
120        #
121        if test "x${MAKEDEPEND}" = x ; then
122          which makedepend >& /dev/null
123          RETVAL=$?
124          if test ! "x${RETVAL}" = x0 ; then
125             echo "    a system-default makedepend was not found."
126    
127             #  Try to build the cyrus impl
128             rm -f ./genmake_cy_md
129             (
130                 cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
131                     &&  ./configure > /dev/null 2>&1  \
132                     &&  make > /dev/null 2>&1  \
133                     &&  ./makedepend ifparser.c > /dev/null 2>&1  \
134                     &&  echo "true"
135             ) > ./genmake_cy_md
136             grep true ./genmake_cy_md > /dev/null 2>&1
137             RETVAL=$?
138             if test "x$RETVAL" = x0 ; then
139                 MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
140             else
141                 MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
142             fi
143             rm -f ./genmake_cy_md
144          fi
145        fi
146    
147      # look for possible fortran compilers      # look for possible fortran compilers
148      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
149      p_FC=      p_FC=
# Line 139  EOF Line 179  EOF
179          echo "   "$p_FC          echo "   "$p_FC
180          if test "x$FC" = x ; then          if test "x$FC" = x ; then
181              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
182                echo "  Setting FORTRAN compiler to: "$FC
183          fi          fi
184      fi      fi
185    
186      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
187          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
188          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
189              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
190              echo "  The options file:  $p_OF"          fi
191              echo "    appears to match so we'll use it."      fi
192              break  #    echo "  The options file:  $p_OF"
193          fi  #    echo "    appears to match so we'll use it."
194      done  #   for i in $p_FC ; do
195    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
196    #if test -r $p_OF ; then
197    #    OPTFILE=$p_OF
198    #    echo "  The options file:  $p_OF"
199    #    echo "    appears to match so we'll use it."
200    #    break
201    #fi
202    #   done
203      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
204          cat 1>&2 <<EOF          cat 1>&2 <<EOF
205    
# Line 206  get_pdepend_list()  { Line 255  get_pdepend_list()  {
255      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
256          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
257          > ./.pd_tmp          > ./.pd_tmp
258      source ./.pd_tmp      . ./.pd_tmp
259      rm -f ./.pd_tmp      rm -f ./.pd_tmp
260    
261      echo -n "PNAME = "${}      printf "PNAME = "${}
262  }  }
263    
264    
265  #  Explain usage  #  Explain usage
266  usage()  {  usage()  {
267      echo  cat <<EOF
268      echo "Usage: "$0" [OPTIONS]"  
269      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
270      echo    where [OPTIONS] can be:
271      echo "    -help | --help | -h | --h"  
272      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
273      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
274      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
275      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
276      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
277      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
278      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
279      echo "    -make NAME | -m NAME"            made to find an appropriate "standard" optfile in the
280      echo "      --make=NAME | -m=NAME"            tools/build_options/ directory.
281      echo "    -makefile NAME | -mf NAME"  
282      echo "      --makefile=NAME | -mf=NAME"      -pdepend NAME | --pdepend NAME
283      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"        -pdepend=NAME | --pdepend=NAME
284      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            Get package dependency information from "NAME".
285      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"  
286      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      -pdefault NAME | --pdefault NAME
287      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"        -pdefault=NAME | --pdefault=NAME
288      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"            Get the default package list from "NAME".
289      echo "    -disable NAME | --disable NAME"  
290      echo "      -disable=NAME | --disable=NAME"      -make NAME | -m NAME
291      echo "    -enable NAME | --enable NAME"        --make=NAME | -m=NAME
292      echo "      -enable=NAME | --enable=NAME"            Use "NAME" for the MAKE program. The default is "make" but
293      echo "    -standarddirs NAME | --standarddirs NAME"            many platforms, "gmake" is the preferred choice.
294      echo "      -standarddirs=NAME | --standarddirs=NAME"  
295      echo "    -noopt NAME | --noopt NAME"      -makefile NAME | -mf NAME
296      echo "      -noopt=NAME | --noopt=NAME"        --makefile=NAME | -mf=NAME
297  #    echo "    -cpp NAME | --cpp NAME"            Call the makefile "NAME".  The default is "Makefile".
298  #    echo "      -cpp=NAME | --cpp=NAME"  
299      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -makedepend NAME | -md NAME
300      echo "      -fc=NAME | --fc=NAME"        --makedepend=NAME | -md=NAME
301      echo "    -[no]ieee | --[no]ieee"            Use "NAME" for the MAKEDEPEND program.
302      echo "    -[no]mpi | --[no]mpi"  
303      echo "    -[no]jam | --[no]jam"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
304      echo        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
305      echo "  and NAME is a string such as:"            Specify the location of the MITgcm ROOTDIR as "NAME".
306      echo            By default, genamke will try to find the location by
307      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            looking in parent directories (up to the 5th parent).
308      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
309      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
310      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
311      echo "  which, depending upon your shell, may need to be single-quoted"            Here, "NAME" specifies a list of directories that are
312      echo "  if it contains spaces, dashes, or other special characters."            used for additional source code.  Files found in the
313              "mods list" are given preference over files of the same
314              name found elsewhere.
315    
316        -disable NAME | --disable NAME
317          -disable=NAME | --disable=NAME
318              Here "NAME" specifies a list of packages that we don't
319              want to use.  If this violates package dependencies,
320              genamke will exit with an error message.
321    
322        -enable NAME | --enable NAME
323          -enable=NAME | --enable=NAME
324              Here "NAME" specifies a list of packages that we wish
325              to specifically enable.  If this violates package
326              dependencies, genamke will exit with an error message.
327    
328        -standarddirs NAME | --standarddirs NAME
329          -standarddirs=NAME | --standarddirs=NAME
330              Here, "NAME" specifies a list of directories to be
331              used as the "standard" code.
332    
333        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
334          -fc=NAME | --fc=NAME
335              Use "NAME" as the fortran compiler.  By default, genmake
336              will search for a working compiler by trying a list of
337              "usual suspects" such as g77, f77, etc.
338    
339        -[no]ieee | --[no]ieee
340              Do or don't use IEEE numerics.  Note that this option
341              *only* works if it is supported by the OPTFILE that
342              is being used.
343    
344        -mpi | --mpi
345              Include MPI header files and link to MPI libraries
346        -mpi=PATH | --mpi=PATH
347              Include MPI header files and link to MPI libraries using MPI_ROOT
348              set to PATH. i.e. Include files from $PATH/include, link to libraries
349              from $PATH/lib and use binaries from $PATH/bin.
350    
351        -bash NAME
352              Explicitly specify the Bourne or BASH shell to use
353    
354      While it is most often a single word, the "NAME" variables specified
355      above can in many cases be a space-delimited string such as:
356    
357        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
358        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
359        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
360    
361      which, depending upon your shell, may need to be single-quoted.
362    
363      For more detailed genmake documentation, please see:
364    
365        http://mitgcm.org/devel_HOWTO/
366    
367    EOF
368    
369      exit 1      exit 1
370  }  }
371    
# Line 271  get_fortran_c_namemangling()  { Line 376  get_fortran_c_namemangling()  {
376      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
377  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
378  EOF  EOF
379      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
380      RETVAL=$?      RETVAL=$?
381      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
382          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
383          echo          cat <<EOF>> genmake_errors
384          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
385          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
386          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
387    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
388    EOF
389          return 1          return 1
390      fi      fi
391      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
392      RETVAL=$?      RETVAL=$?
393      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
394          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
395          echo          cat <<EOF>> genmake_warnings
396          echo "WARNING: The \"nm\" command failed."  
397          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
398          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
399    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
400    EOF
401          return 1          return 1
402      fi      fi
403      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.f <<EOF
# Line 298  EOF Line 406  EOF
406        call tsub( string )        call tsub( string )
407        end        end
408  EOF  EOF
409      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
410      RETVAL=$?      RETVAL=$?
411      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
412          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
413          echo          cat <<EOF>> genmake_warnings
414          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
415          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
416          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
417    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
418    EOF
419          return 1          return 1
420      fi      fi
421      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
422      RETVAL=$?      RETVAL=$?
423      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
424          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
425          echo          cat <<EOF>> genmake_warnings
426          echo "WARNING: The \"nm\" command failed."  
427          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
428          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
429    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
430    EOF
431          return 1          return 1
432      fi      fi
433    
# Line 338  EOF Line 449  EOF
449      fi      fi
450    
451      FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"      FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
452    
453        #  cleanup the testing files
454        rm -f genmake_tcomp.* genmake_test.*
455    }
456    
457    
458    check_HAVE_CLOC()  {
459        get_fortran_c_namemangling
460        cat <<EOF > genmake_tc_1.c
461    $FC_NAMEMANGLE
462    #include <stdio.h>
463    #include <stdlib.h>
464    #include <unistd.h>
465    #include <assert.h>
466    #include <sys/time.h>
467    void FC_NAMEMANGLE(cloc) ( double *curtim )
468    {
469     struct timeval tv1;
470     gettimeofday(&tv1 , (void *)NULL );
471     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
472     *curtim = *curtim/1.E6;
473  }  }
474    EOF
475        make genmake_tc_1.o >> genmake_tc.log 2>&1
476        RET_C=$?
477        cat <<EOF > genmake_tc_2.f
478          program hello
479          Real*8 wtime
480          external cloc
481          call cloc(wtime)
482          print *," HELLO WORLD", wtime
483          end program hello
484    EOF
485        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
486        RET_F=$?
487        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
488        RETVAL=$?
489        if test "x$RETVAL" = x0 ; then
490            HAVE_CLOC=t
491            DEFINES="$DEFINES -DHAVE_CLOC"
492        fi
493        rm -f genmake_tc*
494    }
495    
496    
497    check_netcdf_libs()  {
498        cat <<EOF > genmake_tnc.F
499          program fgennc
500    #include "netcdf.inc"
501          integer iret, ncid, xid
502          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
503          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
504          iret = nf_def_dim(ncid, 'X', 11, xid)
505          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
506          iret = nf_close(ncid)
507          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
508          end
509    EOF
510        $CPP genmake_tnc.F > genmake_tnc.f  \
511            &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f $LIBS >> genmake_tnc.log 2>&1
512        RET_COMPILE=$?
513        test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
514        RETVAL=$?
515        if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
516            HAVE_NETCDF=t
517        else
518            # try again with "-lnetcdf" added to the libs
519            $CPP genmake_tnc.F > genmake_tnc.f  \
520                &&  $FC $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.f \
521                $LIBS -lnetcdf >> genmake_tnc_2.log 2>&1
522            RET_COMPILE=$?
523            test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
524            RETVAL=$?
525            if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
526                LIBS="$LIBS -lnetcdf"
527                HAVE_NETCDF=t
528            else
529                cat genmake_tnc.log >> genmake_warnings
530            fi
531        fi
532        rm -f genmake_tnc*
533    }
534    
535    
536    
537    ###############################################################################
538    #   Sequential part of script starts here
539    ###############################################################################
540    
541  #  Set defaults here  #  Set defaults here
542  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 348  LN= Line 546  LN=
546  S64=  S64=
547  KPP=  KPP=
548  FC=  FC=
549    CPP=
550  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
551  DEFINES=  DEFINES=
552  PACKAGES=  PACKAGES=
553  ENABLE=  ENABLE=
# Line 366  FOPTIM= Line 564  FOPTIM=
564  CFLAGS=  CFLAGS=
565  KFLAGS1=  KFLAGS1=
566  KFLAGS2=  KFLAGS2=
567    #LDADD=
568  LIBS=  LIBS=
569  KPPFILES=  KPPFILES=
570  NOOPTFILES=  NOOPTFILES=
571  NOOPTFLAGS=  NOOPTFLAGS=
572    MPI=
573    MPIPATH=
574    
575  # DEFINES checked by test compilation  # DEFINES checked by test compilation
576  HAVE_SYSTEM=  HAVE_SYSTEM=
577  HAVE_FDATE=  HAVE_FDATE=
578  FC_NAMEMANGLE=  FC_NAMEMANGLE=
579    HAVE_CLOC=
580    HAVE_NETCDF=
581    
582  MODS=  MODS=
583  TOOLSDIR=  TOOLSDIR=
584  SOURCEDIRS=  SOURCEDIRS=
585  INCLUDEDIRS=  INCLUDEDIRS=
586  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
587    
588    BASH=
589  PWD=`pwd`  PWD=`pwd`
590  MAKE=make  MAKE=make
591  AWK=awk  AWK=awk
# Line 413  TAMC_EXTRA= Line 617  TAMC_EXTRA=
617    
618    
619  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
620  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
621  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
622    
623  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
624  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
# Line 431  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 635  gm_s12="TAF_EXTRA TAMC_EXTRA"
635  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
636  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
637    
638    cat <<EOF
639    
640    GENMAKE :
641    
642    A program for GENerating MAKEfiles for the MITgcm project.  For a
643    quick list of options, use "genmake -h" or for more detail see:
644    
645      http://mitgcm.org/devel_HOWTO/
646    
647    EOF
648    
 echo  
649  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
650  gm_local="genmake_local"  gm_local="genmake_local"
651  for i in . $MODS ; do  for i in . $MODS ; do
652      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
653          source $i/$gm_local          . $i/$gm_local
654          break          break
655      fi      fi
656  done  done
657  echo -n "  getting local config information:  "  printf "  getting local config information:  "
658  if test -e $gm_local ; then  if test -e $gm_local ; then
659      echo "using $gm_local"      echo "using $gm_local"
660      source $gm_local      . $gm_local
661      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
662      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
663  else  else
# Line 486  for ac_option ; do Line 699  for ac_option ; do
699          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
700              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
701                    
702          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
703              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
704          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
705              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 506  for ac_option ; do Line 719  for ac_option ; do
719          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
720              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
721                    
722            -bash | --bash)
723                ac_prev=BASH ;;
724            -bash=* | --bash=*)
725                BASH=$ac_optarg ;;
726            
727            -makedepend | --makedepend | -md | --md)
728                ac_prev=MAKEDEPEND ;;
729            -makedepend=* | --makedepend=* | -md=* | --md=*)
730                MAKEDEPEND=$ac_optarg ;;
731            
732          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
733              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
734          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
735              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
736                    
737          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
738              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
739          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
740              PLATFORM=$ac_optarg ;;              echo
741                usage
742                ;;
743                    
744          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
745              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 541  for ac_option ; do Line 766  for ac_option ; do
766          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
767              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
768    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
769  #           -cpp | --cpp)  #           -cpp | --cpp)
770  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
771  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
# Line 560  for ac_option ; do Line 780  for ac_option ; do
780              IEEE=true ;;              IEEE=true ;;
781          -noieee | --noieee)          -noieee | --noieee)
782              IEEE= ;;              IEEE= ;;
783            
784          -mpi | --mpi)          -mpi | --mpi)
785              MPI=true ;;              MPI=true ;;
786          -nompi | --nompi)          -mpi=* | --mpi=*)
787              MPI= ;;              MPIPATH=$ac_optarg
788                MPI=true ;;
789                    
790          -jam | --jam)  #       -jam | --jam)
791              JAM=1 ;;  #           JAM=1 ;;
792          -nojam | --nojam)  #       -nojam | --nojam)
793              JAM=0 ;;  #           JAM=0 ;;
794                    
795          -ds | --ds)          -ds | --ds)
796              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 617  if test "x${ROOTDIR}" = x ; then Line 838  if test "x${ROOTDIR}" = x ; then
838          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
839              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
840                  ROOTDIR=$d                  ROOTDIR=$d
841                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
842                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
843                  break                  break
844              fi              fi
# Line 648  fi Line 869  fi
869  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
870      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
871          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
872          source "$OPTFILE"          . "$OPTFILE"
873          RETVAL=$?          RETVAL=$?
874          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
875              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
876              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
877              exit 1              exit 1
878          fi          fi
# Line 675  fi Line 896  fi
896  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
897      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
898          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
899          source "$AD_OPTFILE"          . "$AD_OPTFILE"
900          RETVAL=$?          RETVAL=$?
901          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
902              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
903              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
904              exit 1              exit 1
905          fi          fi
# Line 691  if test "x${AD_OPTFILE}" != xNONE ; then Line 912  if test "x${AD_OPTFILE}" != xNONE ; then
912      fi      fi
913  fi  fi
914    
915  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
916  #  and abort!  #  either set defaults or complain and abort!
917    if test ! "x$BASH" = x ; then
918        # add a trailing space so that it works within the Makefile syntax (see below)
919        BASH="$BASH "
920    fi
921  if test "x$FC" = x ; then  if test "x$FC" = x ; then
922      cat <<EOF 1>&2      cat <<EOF 1>&2
923    
# Line 706  fi Line 931  fi
931  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
932      LINK=$FC      LINK=$FC
933  fi  fi
934    if test "x$MAKE" = x ; then
935        MAKE="make"
936    fi
937  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
938      CPP="cpp"      CPP=cpp
939  fi  fi
940    #EH3 === UGLY ===
941    #  The following an ugly little hack to check for $CPP in /lib/ and it
942    #  should eventually be replaced with a more general function that
943    #  searches a combo of the user's path and a list of "usual suspects"
944    #  to find the correct location for binaries such as $CPP.
945    for i in " " "/lib/" ; do
946        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
947    done
948    #EH3 === UGLY ===
949  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
950  RETVAL=$?  RETVAL=$?
951  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 728  fi Line 965  fi
965  if test "x$MAKEDEPEND" = x ; then  if test "x$MAKEDEPEND" = x ; then
966      MAKEDEPEND=makedepend      MAKEDEPEND=makedepend
967  fi  fi
968    if test "x$LN" = x ; then
969        LN="ln -s"
970    fi
971    echo "test" > genmake_test_ln
972    $LN genmake_test_ln genmake_tlink
973    RETVAL=$?
974    if test "x$RETVAL" != x0 ; then
975        cat <<EOF 1>&2
976    
977    Error: The command "ln -s" failed -- please specify a working soft-link
978      command in the optfile.
979    
980    EOF
981        exit 1
982    fi
983    rm -f genmake_test_ln genmake_tlink
984    
985    if test ! "x$MPI" = x ; then
986          echo "  Turning on MPI cpp macros"
987          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
988    fi
989    
990  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
991  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
992  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
993        program hello        program hello
994        call system('echo hi')        call system('echo hi')
# Line 749  else Line 1006  else
1006  fi  fi
1007  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1008    
1009  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1010  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.f <<EOF
1011        program hello        program hello
1012        CHARACTER(128) string        CHARACTER(128) string
# Line 770  else Line 1027  else
1027  fi  fi
1028  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1029    
1030  echo "  The name mangling convention for $FC is...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1031  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  check_HAVE_CLOC
1032  if test "x$FC_NAMEMANGLE" = x ; then  if test "x$HAVE_CLOC" != x ; then
1033      get_fortran_c_namemangling      echo "yes"
1034    else
1035        echo "no"
1036  fi  fi
1037  echo "    '$FC_NAMEMANGLE'"  rm -f genmake_t*
1038  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template  
1039  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1  printf "  Can we create NetCDF-enabled binaries...  "
1040  RETVAL=$?  check_netcdf_libs
1041  if test "x$RETVAL" != x0 ; then  if test "x$HAVE_NETCDF" != x ; then
1042      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      echo "yes"
1043    else
1044        echo "no"
1045  fi  fi
1046    
1047    
1048  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1049  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1050  for d in $MODS ; do  for d in $MODS ; do
1051      if test ! -d $d ; then      if test ! -d $d ; then
1052          echo          echo
1053          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1054          exit 1          exit 1
1055      else      else
1056          echo -n " $d"          printf " $d"
1057          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1058          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1059      fi      fi
# Line 822  if test "x${TOOLSDIR}" = x ; then Line 1083  if test "x${TOOLSDIR}" = x ; then
1083      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1084  fi  fi
1085  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1086      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1087      exit 1      exit 1
1088  fi  fi
1089  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1090      S64='$(TOOLSDIR)/set64bitConst.sh'      S64='$(TOOLSDIR)/set64bitConst.sh'
1091  fi  fi
1092    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1093    
1094  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1095    
# Line 836  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1098  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1098  #  they appear as regular source code  #  they appear as regular source code
1099  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1100      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1101      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1102      RETVAL=$?      RETVAL=$?
1103      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1104          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1105      else      else
1106          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1107          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1108          exit 1          exit 1
1109      fi      fi
1110  fi  fi
1111    
1112    #same for exch2
1113    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1114        echo "  Making source files in exch2 from  templates"
1115        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1116        RETVAL=$?
1117        if test "x${RETVAL}" = x0 ; then
1118            rm -f make_exch2.errors
1119        else
1120            echo "Error: problem encountered while building source files in exch2:"
1121            cat make_exch2.errors 1>&2
1122            exit 1
1123        fi
1124    fi
1125    
1126  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1127  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1128      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 873  if test ! "x${RETVAL}" = x0 ; then Line 1149  if test ! "x${RETVAL}" = x0 ; then
1149      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1150      exit 1      exit 1
1151  fi  fi
1152  source ./.pd_tmp  . ./.pd_tmp
1153  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1154    
1155  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1156  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1157  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1158  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1159  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1160      for i in "." $MODS ; do      for i in "." $MODS ; do
1161          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 892  if test "x${PDEFAULT}" = x ; then Line 1168  if test "x${PDEFAULT}" = x ; then
1168      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1169  fi  fi
1170  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1171      echo "default packages file disabled"      echo "    default packages file disabled"
1172  else  else
1173      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1174          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1175      else      else
1176          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1177          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1178          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1179          RETVAL=$?          RETVAL=$?
1180          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1181              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1182              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1183              exit 1              exit 1
1184          fi          fi
# Line 1031  for i in $PACKAGES ; do Line 1306  for i in $PACKAGES ; do
1306      fi      fi
1307  done  done
1308    
1309    #  Build MNC templates and check for ability to build and use NetCDF
1310    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1311    RETVAL=$?
1312    if test "x$RETVAL" = x0 ; then
1313        ( cd $ROOTDIR"/pkg/mnc" && $MAKE templates ) > make_mnc.errors 2>&1
1314        RETVAL=$?
1315        if test "x${RETVAL}" = x0 ; then
1316            rm -f make_mnc.errors
1317        else
1318            echo "Error: problem encountered while building source files in pkg/mnc:"
1319            cat make_mnc.errors 1>&2
1320            exit 1
1321        fi
1322        if test "x$HAVE_NETCDF" != xt ; then
1323            cat <<EOF
1324    
1325  # Create a list of #define and #undef to enable/disable packages  WARNING: the "mnc" package has been enabled but tests failed to
1326  PACKAGES_DOT_H=PACKAGES_CONFIG.h    compile and/or execute NetCDF applications.  Please check that:
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
1327    
1328  C  Packages disabled by genmake:    1) NetCDF is installed for your compiler and
1329      2) the LIBS variable (within the 'optfile") specifies the correct
1330           NetCDF library to link against.
1331      
1332  EOF  EOF
1333        fi
1334    fi
1335    
1336    # Create a list of #define and #undef to enable/disable packages
1337    PACKAGES_DOT_H=PACKAGES_CONFIG.h
1338  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1339  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1340  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1341  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1342  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1343  all_pack=  all_pack=
1344    DISABLED_PACKAGES=
1345  for n in $names ; do  for n in $names ; do
1346      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1347          has_pack="f"          has_pack="f"
# Line 1063  for n in $names ; do Line 1353  for n in $names ; do
1353          done          done
1354          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1355              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1356              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1357          fi          fi
1358      fi      fi
1359  done  done
1360  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1361  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1362      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1363      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1364  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1365    
1366  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1367      case $i in      case $i in
1368          aim_v23)          aim_v23)
1369              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1370              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1371              ;;              ;;
1372      esac      esac
1373  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1374    
1375  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1376    
1377  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1378  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1379  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1380      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1381  fi  fi
1382  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1383      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1384      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1385          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1386          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1387          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1388      else              exit 1
1389          SOURCEDIRS="$SOURCEDIRS $adr"          else
1390      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1391      adr="$ROOTDIR/$d/inc"          fi
1392      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1393          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1394          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1395          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1396      else              exit 1
1397          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1398      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1399  done          fi
1400        done
1401    fi
1402    
1403  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1404  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1405  CPP_OPTIONS=  CPP_OPTIONS=
1406    CPP_EEOPTIONS=
1407  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1408    names=`ls -1 "$ROOTDIR/pkg"`
1409  for i in $spaths ; do  for i in $spaths ; do
1410      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1411      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1412          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1413          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1414          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1415            for n in $names ; do
1416                test_for_package_in_cpp_options $CPP_OPTIONS $n
1417            done
1418        fi
1419        try="$i/CPP_EEOPTIONS.h"
1420        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1421            echo "    found CPP_EEOPTIONS=\"$try\""
1422            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1423    #**** not yet enabled ****
1424    #        test_for_mpi_in_cpp_eeoptions $try
1425    #**** not yet enabled ****
1426            CPP_EEOPTIONS="$try"
1427      fi      fi
1428  done  done
1429  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1430      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1431      exit 1      exit 1
1432  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1433    
1434  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1435  #  compiler.  #  compiler.
# Line 1166  for i in $SOURCEDIRS ; do Line 1444  for i in $SOURCEDIRS ; do
1444      done      done
1445  done  done
1446    
 cat <<EOF > adjoint_sed  
 s/call adopen(/call adopen ( mythid,\\  
      \&           /g  
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1447    
1448  echo  echo
1449  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
# Line 1194  rm -rf .links.tmp Line 1461  rm -rf .links.tmp
1461  mkdir .links.tmp  mkdir .links.tmp
1462  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1463  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1464  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1465  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1466  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1467  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1468  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1469  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1470  for d in $alldirs ; do  for d in $alldirs ; do
1471      deplist=      deplist=
# Line 1207  for d in $alldirs ; do Line 1474  for d in $alldirs ; do
1474      for sf in $sfiles ; do      for sf in $sfiles ; do
1475          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1476              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1477                    case $d/$sf in
1478                      ./$PACKAGES_DOT_H)
1479                            ;;
1480                      ./AD_CONFIG.h)
1481                            ;;
1482                      ./FC_NAMEMANGLE.h)
1483                            ;;
1484                      *)
1485                            touch .links.tmp/$sf
1486                            deplist="$deplist $sf"
1487                            ;;
1488                    esac
1489                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`
                 touch .links.tmp/$sf  
                 deplist="$deplist $sf"  
1490                  case $extn in                  case $extn in
1491                      F)                      F)
1492                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1493                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1494                          ;;                          ;;
1495                      F90)                      F90)
1496                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1497                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1498                          ;;                          ;;
1499                      c)                      c)
1500                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1501                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1502                          ;;                          ;;
1503                      h)                      h)
1504                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1505                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1506                          ;;                          ;;
1507                      flow)                      flow)
1508                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1509                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1510                          ;;                          ;;
1511                  esac                  esac
1512              fi              fi
# Line 1267  EXE_FTL=$EXECUTABLE"_ftl" Line 1544  EXE_FTL=$EXECUTABLE"_ftl"
1544  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1545    
1546  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1547    #
1548    # OPTFILE="$OPTFILE"
1549  #  #
1550  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1551  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1300  EXE_AD      = ${EXE_AD} Line 1579  EXE_AD      = ${EXE_AD}
1579  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1580  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1581    
1582    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1583    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1584    
1585    # These files are created by Makefile
1586    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1587    
1588  EOF  EOF
1589    
1590  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1318  FC = ${FC} Line 1603  FC = ${FC}
1603  # Fortran compiler  # Fortran compiler
1604  F90C = ${F90C}  F90C = ${F90C}
1605  # Link editor  # Link editor
1606  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1607    
1608  # Defines for CPP  # Defines for CPP
1609  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1364  cat >>$MAKEFILE <<EOF Line 1649  cat >>$MAKEFILE <<EOF
1649  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1650    
1651  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1652  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1653            @echo Creating \$@ ...
1654          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1655  depend:  depend:
1656          @make links          @make links
1657          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1658          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1659    
1660  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1661    
1662  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1663    
# Line 1380  output.txt: \$(EXECUTABLE) Line 1666  output.txt: \$(EXECUTABLE)
1666          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1667    
1668  clean:  clean:
1669          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
1670  Clean:  Clean:
1671          @make clean          @make clean
1672          @make cleanlinks          @make cleanlinks
1673          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
1674            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1675  CLEAN:  CLEAN:
1676          @make Clean          @make Clean
1677          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
# Line 1395  CLEAN: Line 1681  CLEAN:
1681    
1682  #eh3 Makefile: makefile  #eh3 Makefile: makefile
1683  makefile:  makefile:
1684          ${0} $@          $THIS_SCRIPT $@
1685  cleanlinks:  cleanlinks:
1686          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1687    
1688    # Special targets ($SPECIAL_FILES) which are create by make
1689    ${PACKAGES_DOT_H}:
1690            @echo Creating \$@ ...
1691            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1692    AD_CONFIG.h:
1693            @echo Creating \$@ ...
1694            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1695    FC_NAMEMANGLE.h:
1696            @echo Creating \$@ ...
1697            echo "$FC_NAMEMANGLE" > \$@
1698    
1699  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1700  .F.f:  .F.f:
1701          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1441  done Line 1738  done
1738    
1739  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
1740  echo >> $MAKEFILE  echo >> $MAKEFILE
1741  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
1742  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
1743  for i in $AD_FILES ; do  for i in $AD_FILES ; do
1744      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
1745      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
1746  done  done
1747  echo >> $MAKEFILE  echo >> $MAKEFILE
1748  rm -f ad_files  rm -f ad_files
# Line 1458  adtaf: ad_taf_output.f Line 1755  adtaf: ad_taf_output.f
1755  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.f
1756    
1757  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1758            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1759          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1760            -rm -f ad_config.template
1761          @make \$(F77FILES)          @make \$(F77FILES)
1762          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1763          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1764    
1765  ad_taf_output.f: ad_input_code.f  ad_taf_output.f: ad_input_code.f
1766          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1767          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1768    
1769    adtafonly:
1770            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1771            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1772    
1773  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
1774          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1775    
1776  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.f: ad_input_code.f
1777          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1778          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1779    
1780  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
1781          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
# Line 1484  ftltaf: ftl_taf_output.f Line 1787  ftltaf: ftl_taf_output.f
1787  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.f
1788    
1789  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1790            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1791          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1792            -rm -f ftl_config.template
1793          @make \$(F77FILES)          @make \$(F77FILES)
1794          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
1795          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1796    
1797  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.f: ftl_input_code.f
1798          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1799          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1800    
1801    ftltafonly:
1802            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1803            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1804    
1805  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
1806          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1807    
1808  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.f: ftl_input_code.f
1809          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1810          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1811    
1812  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1813          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1814    
1815    
1816  # ... SVD ...  # ... SVD ...
1817  svd: svd_taf  svdtaf: ad_taf_output.f ftl_taf_output.f
1818  svd_taf_f: svd_taf_output.f  svdall: svd_taf
   
 svd_input_code.f: \$(SRCFILES)  
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
1819    
1820  svd_taf: svd_taf_output.o \$(OBJFILES)  svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1821          \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1822    
1823    
1824  #=========================================  #=========================================
# Line 1560  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 1859  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
1859    
1860  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1861    
1862  #  Write the "template" files for the adjoint builds  # Create special header files
1863  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1864  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
1865  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1866  C    unless you are CERTAIN that you know what you are doing.  else
1867        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
1868  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
1869  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
1870  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
1871  EOF      else
1872  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1873  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1874  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
1875  C    unless you are CERTAIN that you know what you are doing.  fi
1876    if test ! -f AD_CONFIG.h ; then
1877  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1878  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
1879    
1880    
1881  #  Write the "state" for future records  #  Write the "state" for future records
1882  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
1883      echo -n "" > genmake_state      printf "" > genmake_state
1884      for i in $gm_state ; do      for i in $gm_state ; do
1885          t1="t2=\$$i"          t1="t2=\$$i"
1886          eval $t1          eval $t1

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