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revision 1.31 by edhill, Wed Nov 12 21:14:57 2003 UTC revision 1.121 by edhill, Tue Mar 22 19:45:03 2005 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 13  Line 13 
13  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
14      cpp_options=$1      cpp_options=$1
15      pkg=$2      pkg=$2
16      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17      RETVAL=$?      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20          exit 99  }
21      fi  
22      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
23      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
25          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
26          exit 99      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27      fi      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38      RETVAL=$?      RETVAL=$?
39      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
40          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
41          exit 99          grep -i "$strng" $file
42            return 1
43      fi      fi
44      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
45  }  }
46    
47  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
# Line 62  expand_pkg_groups() { Line 67  expand_pkg_groups() {
67          done          done
68          PACKAGES=$new_packages          PACKAGES=$new_packages
69          rm -f ./p[1,2].tmp          rm -f ./p[1,2].tmp
70            return $matched
71      else      else
72          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
73      fi      fi
74  }  }
75    
76    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
77    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
78    check_for_broken_Ff()  {
79        #  Do we have defaults for $FS and/or $FS90 ?
80        tfs=f
81        tfs9=f90
82        if test "x$FS" != x ; then
83            tfs="$FS"
84        fi
85        if test "x$FS90" != x ; then
86            tfs9="$FS90"
87        fi
88    
89        #  First check the ability to create a *.F/.f pair.
90        cat <<EOF >> genmake_hello.F
91          program hello
92          write(*,*) 'hi'
93          stop
94          end
95    EOF
96        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
97        RETVAL=$?
98        if test "x$RETVAL" != x0 ; then
99            if test "x$FS" = x ; then
100                FS='for'
101                FS90='fr9'
102                check_for_broken_Ff
103            else
104                cat <<EOF 2>&1
105    ERROR: Your file system cannot distinguish between *.F and *.f files
106      (fails the "cp" test) and this program cannot find a suitable
107      replacement extension.  Please try a different build environment or
108      contact the <MITgcm-support@mitgcm.org> list for help.
109    
110    EOF
111                exit -1
112            fi
113            return
114        fi
115        rm -f genmake_hello.*
116    
117        #  Check the ability of ${MAKE} and ${LN} to use the current set
118        #  of extensions.
119        cat <<EOF >> genmake_hello.F
120          program hello
121          write(*,*) 'hi'
122          stop
123          end
124    EOF
125        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
126        cat <<EOF >> $MAKEFILE
127    .SUFFIXES:
128    .SUFFIXES: .$tfs .F
129    .F.$tfs:
130            $LN \$< \$@
131    EOF
132        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
133        RETVAL=$?
134        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
135            if test "x$FS" = x ; then
136                FS='for'
137                FS90='fr9'
138                check_for_broken_Ff
139            else
140                cat <<EOF 2>&1
141    ERROR: Your file system cannot distinguish between *.F and *.f files
142      (fails the "make/ln" test) and this program cannot find a suitable
143      replacement extension.  Please try a different build environment or
144      contact the <MITgcm-support@mitgcm.org> list for help.
145    
146    EOF
147                exit -1
148                return
149            fi
150        fi
151        rm -f genmake_hello.* $MAKEFILE
152        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
153    
154        #  If we make it here, use the extensions
155        FS=$tfs
156        FS90=$tfs9
157        return
158    }
159    
160    
161    look_for_makedepend()  {
162    
163        #  The "original" makedepend is part of the Imake system that is
164        #  most often distributed with XFree86 or with an XFree86 source
165        #  package.  As a result, many machines (eg. generic Linux) do not
166        #  have a system-default "makedepend" available.  For those
167        #  systems, we have two fall-back options:
168        #
169        #    1) a makedepend implementation shipped with the cyrus-imapd
170        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
171        #
172        #    2) a known-buggy xmakedpend shell script
173        #
174        #  So the choices are, in order:
175        #
176        #    1) use the user-specified program
177        #    2) use a system-wide default
178        #    3) locally build and use the cyrus implementation
179        #    4) fall back to the buggy local xmakedpend script
180        #
181        if test "x${MAKEDEPEND}" = x ; then
182            which makedepend > /dev/null 2>&1
183            RV0=$?
184            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
185            #  echo 'MAKEFILE="'$MAKEFILE'"'
186            cat <<EOF >> $MAKEFILE
187    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
188    #
189    #   Some "makedepend" implementations will die if they cannot
190    #   find a Makefile -- so this file is here to gives them an
191    #   empty one to find and parse.
192    EOF
193            cat <<EOF >> genmake_tc.f
194          program test
195          write(*,*) 'test'
196          stop
197          end
198    EOF
199            makedepend genmake_tc.f > /dev/null 2>&1
200            RV1=$?
201            test -f $MAKEFILE  &&  rm -f $MAKEFILE
202            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
203            if test "x${RV0}${RV1}" = x00 ; then
204                MAKEDEPEND=makedepend
205            else
206                echo "    a system-default makedepend was not found."
207                
208                #  Try to build the cyrus implementation
209                build_cyrus_makedepend
210                RETVAL=$?
211                if test "x$RETVAL" != x0 ; then
212                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
213                fi
214                rm -f ./genmake_cy_md
215            fi
216        else
217            #  echo "MAKEDEPEND=${MAKEDEPEND}"
218            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
219            RETVAL=$?
220            if test x"$RETVAL" = x0 ; then
221                build_cyrus_makedepend
222            fi
223        fi
224    }
225    
226    
227    build_cyrus_makedepend()  {
228        rm -f ./genmake_cy_md
229        (
230            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
231                &&  ./configure > /dev/null 2>&1  \
232                &&  make > /dev/null 2>&1
233            if test -x ./makedepend.exe ; then
234                $LN ./makedepend.exe ./makedepend
235            fi
236            ./makedepend ifparser.c > /dev/null 2>&1  \
237                &&  echo "true"
238        ) > ./genmake_cy_md
239        grep true ./genmake_cy_md > /dev/null 2>&1
240        RETVAL=$?
241        rm -f ./genmake_cy_md
242        if test "x$RETVAL" = x0 ; then
243            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
244            return 0
245        else
246            echo "WARNING: unable to build cyrus-imapd-makedepend"
247            return 1
248        fi
249    }
250    
251  # Guess possible config options for this host  # Guess possible config options for this host
252  find_possible_configs()  {  find_possible_configs()  {
253    
254      tmp1=`uname`"_"`uname -m`      tmp1=`uname`"_"`uname -m`
255      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
256      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
257      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
258        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
259        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
260        PLATFORM=$tmp3
261        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
262      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
263      echo "  The platform appears to be:  $PLATFORM"      echo "  The platform appears to be:  $PLATFORM"
 #     if test "x$OFLIST" = x ; then  
 #       echo "  No pre-defined options files were found matching this platform"  
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
264            
265      echo "test" > test      echo "test" > test
266      ln -s ./test link      ln -s ./test link
# Line 104  find_possible_configs()  { Line 278  find_possible_configs()  {
278          CPP="cpp -traditional -P"          CPP="cpp -traditional -P"
279      fi      fi
280    
281      # look for possible fortran compilers      look_for_makedepend
282    
283        #================================================================
284        #  look for possible C compilers
285        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"
286        p_CC=
287        for c in $tmp ; do
288            rm -f ./genmake_hello.c  ./genmake_hello
289            cat >> genmake_hello.c << EOF
290    #include <stdio.h>
291    int main(int argc, char **argv) {
292      printf("Hello!\n");
293      return 0;
294    }
295    EOF
296            $c -o genmake_hello genmake_hello.c > /dev/null 2>&1
297            RETVAL=$?
298            if test "x${RETVAL}" = x0 ; then
299                p_CC="$p_CC $c"
300            fi
301        done
302        rm -f ./genmake_hello.c ./genmake_hello
303        if test "x${p_CC}" = x ; then
304            cat 1>&2 <<EOF
305    
306    Error: No C compilers were found in your path.  Please specify one using:
307    
308        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
309        2) the CC or MITGCM_CC environment variables.
310    
311    EOF
312            exit 1
313        else
314            echo "  The possible C compilers found in your path are:"
315            echo "   "$p_CC
316            if test "x$CC" = x ; then
317                CC=`echo $p_CC | $AWK '{print $1}'`
318                echo "  Setting C compiler to: "$CC
319            fi
320        fi
321    
322        #================================================================
323        #  look for possible FORTRAN compilers
324      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
325      p_FC=      p_FC=
326      for c in $tmp ; do      for c in $tmp ; do
# Line 130  Error: No Fortran compilers were found i Line 346  Error: No Fortran compilers were found i
346    
347      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
348      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
349      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
350    
351  EOF  EOF
352          exit 1          exit 1
# Line 139  EOF Line 355  EOF
355          echo "   "$p_FC          echo "   "$p_FC
356          if test "x$FC" = x ; then          if test "x$FC" = x ; then
357              FC=`echo $p_FC | $AWK '{print $1}'`              FC=`echo $p_FC | $AWK '{print $1}'`
358                echo "  Setting FORTRAN compiler to: "$FC
359          fi          fi
360      fi      fi
361    
362      for i in $p_FC ; do      if test "x$OPTFILE" = x ; then
363          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
364          if test -r $p_OF ; then          if test ! -r $OPTFILE ; then
365              OPTFILE=$p_OF               echo "  I looked for the file "$OPTFILE" but did not find it"
366              echo "  The options file:  $p_OF"          fi
367              echo "    appears to match so we'll use it."      fi
368              break  #    echo "  The options file:  $p_OF"
369          fi  #    echo "    appears to match so we'll use it."
370      done  #   for i in $p_FC ; do
371    #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
372    #if test -r $p_OF ; then
373    #    OPTFILE=$p_OF
374    #    echo "  The options file:  $p_OF"
375    #    echo "    appears to match so we'll use it."
376    #    break
377    #fi
378    #   done
379      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
380          cat 1>&2 <<EOF          cat 1>&2 <<EOF
381    
# Line 206  get_pdepend_list()  { Line 431  get_pdepend_list()  {
431      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
432          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
433          > ./.pd_tmp          > ./.pd_tmp
434      source ./.pd_tmp      . ./.pd_tmp
435      rm -f ./.pd_tmp      rm -f ./.pd_tmp
436    
437      echo -n "PNAME = "${}      printf "PNAME = "${}
438  }  }
439    
440    
441  #  Explain usage  #  Explain usage
442  usage()  {  usage()  {
443      echo  cat <<EOF
444      echo "Usage: "$0" [OPTIONS]"  
445      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
446      echo    where [OPTIONS] can be:
447      echo "    -help | --help | -h | --h"  
448      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
449      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
450      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
451      echo "    -pdepend NAME | --pdepend NAME"      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
452      echo "      -pdepend=NAME | --pdepend=NAME"        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
453      echo "    -pdefault NAME | --pdefault NAME"            Use "NAME" as the adoptfile.  By default, the file at
454      echo "      -pdefault=NAME | --pdefault=NAME"            "tools/adjoint_options/adjoint_default" will be used.
455      echo "    -make NAME | -m NAME"  
456      echo "      --make=NAME | -m=NAME"      -nooptfile | --nooptfile
457      echo "    -makefile NAME | -mf NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
458      echo "      --makefile=NAME | -mf=NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
459      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"            Use "NAME" as the optfile.  By default, an attempt will be
460      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"            made to find an appropriate "standard" optfile in the
461      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"            tools/build_options/ directory.
462      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  
463      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      -pdepend NAME | --pdepend NAME
464      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"        -pdepend=NAME | --pdepend=NAME
465      echo "    -disable NAME | --disable NAME"            Get package dependency information from "NAME".
466      echo "      -disable=NAME | --disable=NAME"  
467      echo "    -enable NAME | --enable NAME"      -pdefault NAME | --pdefault NAME
468      echo "      -enable=NAME | --enable=NAME"        -pdefault=NAME | --pdefault=NAME
469      echo "    -standarddirs NAME | --standarddirs NAME"            Get the default package list from "NAME".
470      echo "      -standarddirs=NAME | --standarddirs=NAME"  
471      echo "    -noopt NAME | --noopt NAME"      -make NAME | -m NAME
472      echo "      -noopt=NAME | --noopt=NAME"        --make=NAME | -m=NAME
473  #    echo "    -cpp NAME | --cpp NAME"            Use "NAME" for the MAKE program. The default is "make" but
474  #    echo "      -cpp=NAME | --cpp=NAME"            many platforms, "gmake" is the preferred choice.
475      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
476      echo "      -fc=NAME | --fc=NAME"      -makefile NAME | -mf NAME
477      echo "    -[no]ieee | --[no]ieee"        --makefile=NAME | -mf=NAME
478      echo "    -[no]mpi | --[no]mpi"            Call the makefile "NAME".  The default is "Makefile".
479      echo "    -[no]jam | --[no]jam"  
480      echo      -makedepend NAME | -md NAME
481      echo "  and NAME is a string such as:"        --makedepend=NAME | -md=NAME
482      echo            Use "NAME" for the MAKEDEPEND program.
483      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
484      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
485      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
486      echo            Specify the location of the MITgcm ROOTDIR as "NAME".
487      echo "  which, depending upon your shell, may need to be single-quoted"            By default, genamke will try to find the location by
488      echo "  if it contains spaces, dashes, or other special characters."            looking in parent directories (up to the 5th parent).
489    
490        -mods NAME | --mods NAME | -mo NAME | --mo NAME
491          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
492              Here, "NAME" specifies a list of directories that are
493              used for additional source code.  Files found in the
494              "mods list" are given preference over files of the same
495              name found elsewhere.
496    
497        -disable NAME | --disable NAME
498          -disable=NAME | --disable=NAME
499              Here "NAME" specifies a list of packages that we don't
500              want to use.  If this violates package dependencies,
501              genamke will exit with an error message.
502    
503        -enable NAME | --enable NAME
504          -enable=NAME | --enable=NAME
505              Here "NAME" specifies a list of packages that we wish
506              to specifically enable.  If this violates package
507              dependencies, genamke will exit with an error message.
508    
509        -standarddirs NAME | --standarddirs NAME
510          -standarddirs=NAME | --standarddirs=NAME
511              Here, "NAME" specifies a list of directories to be
512              used as the "standard" code.
513    
514        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
515          -fc=NAME | --fc=NAME
516              Use "NAME" as the fortran compiler.  By default, genmake
517              will search for a working compiler by trying a list of
518              "usual suspects" such as g77, f77, etc.
519    
520        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
521              Use "NAME" as the C compiler.  By default, genmake
522              will search for a working compiler by trying a list of
523              "usual suspects" such as gcc, c89, cc, etc.
524    
525        -[no]ieee | --[no]ieee
526              Do or don't use IEEE numerics.  Note that this option
527              *only* works if it is supported by the OPTFILE that
528              is being used.
529    
530        -mpi | --mpi
531              Include MPI header files and link to MPI libraries
532        -mpi=PATH | --mpi=PATH
533              Include MPI header files and link to MPI libraries using MPI_ROOT
534              set to PATH. i.e. Include files from \$PATH/include, link to libraries
535              from \$PATH/lib and use binaries from \$PATH/bin.
536    
537        -bash NAME
538              Explicitly specify the Bourne or BASH shell to use
539    
540      While it is most often a single word, the "NAME" variables specified
541      above can in many cases be a space-delimited string such as:
542    
543        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
544        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
545        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
546    
547      which, depending upon your shell, may need to be single-quoted.
548    
549      For more detailed genmake documentation, please see:
550    
551        http://mitgcm.org/devel_HOWTO/
552    
553    EOF
554    
555      exit 1      exit 1
556  }  }
557    
558  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
559  get_fortran_c_namemangling()  {  get_fortran_c_namemangling()  {
560    
561        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
562        if test ! "x$FC_NAMEMANGLE" = x ; then
563            return 0
564        fi
565    
566      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
567            
568      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
569  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
570  EOF  EOF
571      $MAKE genmake_test.o > genmake_test.log 2>&1      $MAKE genmake_test.o >> genmake_warnings 2>&1
572      RETVAL=$?      RETVAL=$?
573      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_test.log >> genmake_errors  
574          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
575          echo          cat <<EOF>> genmake_errors
576          echo "WARNING: C test compile fails -- please see \"genmake_errors\""  
577          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: C test compile fails
578          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
579    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
580    EOF
581          return 1          return 1
582      fi      fi
583      c_tcall=`nm genmake_test.o | grep tcall | cut -d ' ' -f 3`      c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
584      RETVAL=$?      RETVAL=$?
585      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
586          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
587          echo          cat <<EOF>> genmake_warnings
588          echo "WARNING: The \"nm\" command failed."  
589          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
590          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
591    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
592    EOF
593          return 1          return 1
594      fi      fi
595      cat > genmake_tcomp.f <<EOF      cat > genmake_tcomp.$FS <<EOF
596        subroutine tcall( string )        subroutine tcall( string )
597        character*(*) string        character*(*) string
598        call tsub( string )        call tsub( string )
599        end        end
600  EOF  EOF
601      $FC $FFLAGS $DEFINES -c genmake_tcomp.f > genmake_tcomp.log 2>&1      $FC $FFLAGS $DEFINES -c genmake_tcomp.$FS >> genmake_warnings 2>&1
602      RETVAL=$?      RETVAL=$?
603      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
         cat genmake_tcomp.log >> genmake_errors  
604          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
605          echo          cat <<EOF>> genmake_warnings
606          echo "WARNING: FORTRAN test compile fails -- please see \"genmake_errors\""  
607          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: FORTRAN test compile fails -- please see "genmake_errors"
608          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
609    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
610    EOF
611          return 1          return 1
612      fi      fi
613      f_tcall=`nm genmake_tcomp.o | grep tcall | cut -d ' ' -f 3`      f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
614      RETVAL=$?      RETVAL=$?
615      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
616          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
617          echo          cat <<EOF>> genmake_warnings
618          echo "WARNING: The \"nm\" command failed."  
619          echo "WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'"  WARNING: The "nm" command failed.
620          echo "WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here."  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
621    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
622    EOF
623          return 1          return 1
624      fi      fi
625    
# Line 338  EOF Line 641  EOF
641      fi      fi
642    
643      FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"      FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
644    
645        #  cleanup the testing files
646        rm -f genmake_tcomp.* genmake_test.*
647    }
648    
649    
650    check_HAVE_CLOC()  {
651        get_fortran_c_namemangling
652        cat <<EOF > genmake_tc_1.c
653    $FC_NAMEMANGLE
654    #include <stdio.h>
655    #include <stdlib.h>
656    #include <unistd.h>
657    #include <assert.h>
658    #include <sys/time.h>
659    void FC_NAMEMANGLE(cloc) ( double *curtim )
660    {
661     struct timeval tv1;
662     gettimeofday(&tv1 , (void *)NULL );
663     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
664     *curtim = *curtim/1.E6;
665    }
666    EOF
667        make genmake_tc_1.o >> genmake_warnings 2>&1
668        RET_C=$?
669        cat <<EOF > genmake_tc_2.$FS
670          program hello
671          Real*8 wtime
672          external cloc
673          call cloc(wtime)
674          print *," HELLO WORLD", wtime
675          end program hello
676    EOF
677        $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1
678        RET_F=$?
679        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1
680        RETVAL=$?
681        if test "x$RETVAL" = x0 ; then
682            HAVE_CLOC=t
683            DEFINES="$DEFINES -DHAVE_CLOC"
684        fi
685        rm -f genmake_tc*
686    }
687    
688    
689    check_HAVE_STAT()  {
690        get_fortran_c_namemangling
691        cat <<EOF > genmake_tc_1.c
692    $FC_NAMEMANGLE
693    #include <stdio.h>
694    #include <stdlib.h>
695    #include <unistd.h>
696    #include <sys/stat.h>
697    #include <sys/types.h>
698    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
699    {
700        char name[512];
701        struct stat astat;
702    
703        name[0] = 'a'; name[1] = '\0';
704        if (! stat(name, &astat))
705            *nbyte = (int)(astat.st_size);
706        else
707            *nbyte = -1;
708    }
709    EOF
710        make genmake_tc_1.o >> genmake_tc.log 2>&1
711        RET_C=$?
712        cat <<EOF > genmake_tc_2.$FS
713          program hello
714          integer nbyte
715          call tfsize(nbyte)
716          print *," HELLO WORLD", nbyte
717          end program hello
718    EOF
719        $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_tc.log 2>&1
720        RET_F=$?
721        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
722        RETVAL=$?
723        if test "x$RETVAL" = x0 ; then
724            HAVE_STAT=t
725            DEFINES="$DEFINES -DHAVE_STAT"
726        fi
727        rm -f genmake_tc*
728    }
729    
730    
731    check_netcdf_libs()  {
732        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
733            return
734        fi
735        echo "" > genmake_tnc.log
736        cat <<EOF > genmake_tnc.F
737          program fgennc
738    #include "netcdf.inc"
739    EOF
740        if test ! "x$MPI" = x ; then
741            echo '#include "mpif.h"' >> genmake_tnc.F
742        fi
743        cat <<EOF >> genmake_tnc.F
744          integer iret, ncid, xid
745          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
746          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
747          iret = nf_def_dim(ncid, 'X', 11, xid)
748          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
749          iret = nf_close(ncid)
750          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
751          end
752    EOF
753        echo "Executing:" > genmake_tnc.log
754        echo "  $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS" \
755            > genmake_tnc.log
756        RET_CPP=f
757        $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
758            &&  RET_CPP=t
759        if test "x$RET_CPP" = xf ; then
760            echo "  WARNING: CPP failed to pre-process the netcdf test." \
761                > genmake_tnc.log
762            echo "    Please check that \$INCLUDES is properly set." \
763                > genmake_tnc.log
764        fi
765        echo "Executing:" > genmake_tnc.log
766        echo "  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS" > genmake_tnc.log
767        echo "  $LINK -o genmake_tnc.o $LIBS" > genmake_tnc.log
768        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
769            &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
770        RET_COMPILE=$?
771    
772        #EH3  Remove test program execution for machines that either disallow
773        #EH3  execution or cannot support it (eg. cross-compilers)
774        #EH3
775        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
776        #EH3 RETVAL=$?
777        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
778    
779        if test "x$RET_COMPILE" = x0 ; then
780            HAVE_NETCDF=t
781        else
782            # try again with "-lnetcdf" added to the libs
783            $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \
784                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
785                &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
786            RET_COMPILE=$?
787            if test "x$RET_COMPILE" = x0 ; then
788                LIBS="$LIBS -lnetcdf"
789                HAVE_NETCDF=t
790            else
791                cat genmake_tnc.log >> genmake_warnings
792            fi
793        fi
794        rm -f genmake_tnc*
795  }  }
796    
797    
798    
799    ###############################################################################
800    #   Sequential part of script starts here
801    ###############################################################################
802    
803  #  Set defaults here  #  Set defaults here
804  COMMANDL="$0 $@"  COMMANDL="$0 $@"
805    
# Line 347  PLATFORM= Line 807  PLATFORM=
807  LN=  LN=
808  S64=  S64=
809  KPP=  KPP=
810  FC=  #FC=
811    #CC=gcc
812    #CPP=
813  LINK=  LINK=
 # DEFINES="-DWORDLENGTH=4"  
814  DEFINES=  DEFINES=
815  PACKAGES=  PACKAGES=
816  ENABLE=  ENABLE=
817  DISABLE=  DISABLE=
818  MAKEFILE=  # MAKEFILE=
819  MAKEDEPEND=  # MAKEDEPEND=
820  PDEPEND=  PDEPEND=
821  DUMPSTATE=t  DUMPSTATE=t
822  PDEFAULT=  PDEFAULT=
823  OPTFILE=  OPTFILE=
824  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
825  FFLAGS=  FFLAGS=
826  FOPTIM=  FOPTIM=
827  CFLAGS=  CFLAGS=
828  KFLAGS1=  KFLAGS1=
829  KFLAGS2=  KFLAGS2=
830    #LDADD=
831  LIBS=  LIBS=
832  KPPFILES=  KPPFILES=
833  NOOPTFILES=  NOOPTFILES=
834  NOOPTFLAGS=  NOOPTFLAGS=
835    MPI=
836    MPIPATH=
837    
838  # DEFINES checked by test compilation  # DEFINES checked by test compilation
839  HAVE_SYSTEM=  HAVE_SYSTEM=
840  HAVE_FDATE=  HAVE_FDATE=
841  FC_NAMEMANGLE=  FC_NAMEMANGLE=
842    HAVE_CLOC=
843    HAVE_STAT=
844    HAVE_NETCDF=
845    HAVE_ETIME=
846    
847  MODS=  MODS=
848  TOOLSDIR=  TOOLSDIR=
849  SOURCEDIRS=  SOURCEDIRS=
850  INCLUDEDIRS=  INCLUDEDIRS=
851  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
852    
853    G2ARGS=
854    BASH=
855  PWD=`pwd`  PWD=`pwd`
856  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
857  AWK=awk  test "x$AWK" = x   &&  AWK=awk
858  THISHOSTNAME=`hostname`  THISHOST=`hostname`
859  THISCWD=`pwd`  THISCWD=`pwd`
860  THISDATE=`date`  THISDATE=`date`
861    THISUSER=`echo $USER`
862    THISVER=
863  MACHINE=`uname -a`  MACHINE=`uname -a`
864  EXECUTABLE=  EXECUTABLE=
865  EXEHOOK=  EXEHOOK=
# Line 397  IEEE= Line 869  IEEE=
869  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
870      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
871  fi  fi
872    FS=
873    FS90=
874    
875  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
876  AD_OPTFILE=  AD_OPTFILE=
# Line 413  TAMC_EXTRA= Line 887  TAMC_EXTRA=
887    
888    
889  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
890  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
891  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="FC CPP IEEE MPI JAM DUMPSTATE STANDARDDIRS"
892    
893  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
894  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
895  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
896  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"
897  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
898  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"
899    
900  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
901  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 431  gm_s12="TAF_EXTRA TAMC_EXTRA" Line 905  gm_s12="TAF_EXTRA TAMC_EXTRA"
905  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
906  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
907    
908    cat <<EOF
909    
910    GENMAKE :
911    
912    A program for GENerating MAKEfiles for the MITgcm project.  For a
913    quick list of options, use "genmake -h" or for more detail see:
914    
915      http://mitgcm.org/devel_HOWTO/
916    
917    EOF
918    
 echo  
919  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
920  gm_local="genmake_local"  gm_local="genmake_local"
921  for i in . $MODS ; do  for i in . $MODS ; do
922      if test -r $i/$gm_local ; then      if test -r $i/$gm_local ; then
923          source $i/$gm_local          . $i/$gm_local
924          break          break
925      fi      fi
926  done  done
927  echo -n "  getting local config information:  "  printf "  getting local config information:  "
928  if test -e $gm_local ; then  if test -f $gm_local ; then
929      echo "using $gm_local"      echo "using $gm_local"
930      source $gm_local      . $gm_local
931      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
932      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
933  else  else
934      echo "none found"      echo "none found"
935  fi  fi
936    
937  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
938  #OPTIONS=  #OPTIONS=
939  #n=0  #n=0
940  #for i ; do  #for i ; do
# Line 463  fi Line 946  fi
946  #done  #done
947  #parse_options  #parse_options
948  ac_prev=  ac_prev=
949  for ac_option ; do  for ac_option in "$@" ; do
950    
951        G2ARGS="$G2ARGS \"$ac_option\""
952    
953      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
954      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 486  for ac_option ; do Line 971  for ac_option ; do
971          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
972              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
973                    
974          -adoptfile | --adoptfile | -ad | --ad)          -adoptfile | --adoptfile | -adof | --adof)
975              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
976          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
977              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
# Line 506  for ac_option ; do Line 991  for ac_option ; do
991          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
992              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
993                    
994            -bash | --bash)
995                ac_prev=BASH ;;
996            -bash=* | --bash=*)
997                BASH=$ac_optarg ;;
998            
999            -makedepend | --makedepend | -md | --md)
1000                ac_prev=MAKEDEPEND ;;
1001            -makedepend=* | --makedepend=* | -md=* | --md=*)
1002                MAKEDEPEND=$ac_optarg ;;
1003            
1004          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -ma | --ma)
1005              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1006          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -ma=* | --ma=*)
1007              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1008                    
1009          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1010              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1011          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1012              PLATFORM=$ac_optarg ;;              echo
1013                usage
1014                ;;
1015                    
1016          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1017              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
# Line 541  for ac_option ; do Line 1038  for ac_option ; do
1038          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1039              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1040    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1041  #           -cpp | --cpp)  #           -cpp | --cpp)
1042  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1043  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1044  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1045                        
1046            -cc | --cc)
1047                ac_prev=CC ;;
1048            -cc=* | --cc=*)
1049                CC=$ac_optarg ;;
1050            
1051          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1052              ac_prev=FC ;;              ac_prev=FC ;;
1053          -fc=* | --fc=*)          -fc=* | --fc=*)
1054              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1055                    
1056            -fs | --fs)
1057                ac_prev=FS ;;
1058            -fs=* | --fs=*)
1059                FS=$ac_optarg ;;
1060            
1061            -fs90 | --fs90)
1062                ac_prev=FS90 ;;
1063            -fs90=* | --fs90=*)
1064                FS90=$ac_optarg ;;
1065            
1066          -ieee | --ieee)          -ieee | --ieee)
1067              IEEE=true ;;              IEEE=true ;;
1068          -noieee | --noieee)          -noieee | --noieee)
1069              IEEE= ;;              IEEE= ;;
1070            
1071          -mpi | --mpi)          -mpi | --mpi)
1072              MPI=true ;;              MPI=true ;;
1073          -nompi | --nompi)          -mpi=* | --mpi=*)
1074              MPI= ;;              MPIPATH=$ac_optarg
1075                MPI=true ;;
1076                    
1077          -jam | --jam)  #       -jam | --jam)
1078              JAM=1 ;;  #           JAM=1 ;;
1079          -nojam | --nojam)  #       -nojam | --nojam)
1080              JAM=0 ;;  #           JAM=0 ;;
1081                    
1082          -ds | --ds)          -ds | --ds)
1083              DUMPSTATE=t ;;              DUMPSTATE=t ;;
# Line 598  for ac_option ; do Line 1106  for ac_option ; do
1106            
1107  done  done
1108    
1109    
1110  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1111      echo      echo
1112      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 610  if test -f ./.genmakerc ; then Line 1119  if test -f ./.genmakerc ; then
1119      echo      echo
1120  fi  fi
1121    
1122    #  Find the MITgcm ${ROOTDIR}
1123  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1124      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1125        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
1126          ROOTDIR=".."          ROOTDIR=".."
1127      else      else
1128          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1129              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1130                  ROOTDIR=$d                  ROOTDIR=$d
1131                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning:  ROOTDIR was not specified but there appears to be"
1132                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
1133                  break                  break
1134              fi              fi
# Line 635  if test ! -d ${ROOTDIR} ; then Line 1146  if test ! -d ${ROOTDIR} ; then
1146      exit 1      exit 1
1147  fi  fi
1148    
1149    #  Find the MITgcm ${THISVER}
1150    if test -f "${ROOTDIR}/doc/tag-index" ; then
1151        THISVER=`grep checkpoint ${ROOTDIR}/doc/tag-index | head -1`
1152    fi
1153    
1154    if test "x$MAKEFILE" = x ; then
1155        MAKEFILE="Makefile"
1156    fi
1157    
1158  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
1159  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1160      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
# Line 648  fi Line 1168  fi
1168  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1169      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1170          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1171          source "$OPTFILE"          . "$OPTFILE"
1172          RETVAL=$?          RETVAL=$?
1173          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1174              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1175              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1176              exit 1              exit 1
1177          fi          fi
# Line 675  fi Line 1195  fi
1195  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1196      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1197          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1198          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1199          RETVAL=$?          RETVAL=$?
1200          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1201              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1202              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1203              exit 1              exit 1
1204          fi          fi
# Line 691  if test "x${AD_OPTFILE}" != xNONE ; then Line 1211  if test "x${AD_OPTFILE}" != xNONE ; then
1211      fi      fi
1212  fi  fi
1213    
1214  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1215  #  and abort!  #  Set default values if not set by the optfile
1216    #
1217    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1218    #  either set defaults or complain and abort!
1219    if test ! "x$BASH" = x ; then
1220        # add a trailing space so that it works within the Makefile syntax (see below)
1221        BASH="$BASH "
1222    fi
1223  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1224      cat <<EOF 1>&2      cat <<EOF 1>&2
1225    
# Line 703  Error: no Fortran compiler: please speci Line 1230  Error: no Fortran compiler: please speci
1230  EOF  EOF
1231      exit 1      exit 1
1232  fi  fi
1233    if test "x$CC" = x ; then
1234        CC=cc
1235    #     cat <<EOF 1>&2
1236    # Error: no C compiler: please specify using one of the following:
1237    #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"
1238    #   2) the "-cc=XXX" command-line option
1239    #   3) the "./genmake_local" file
1240    # EOF
1241    #     exit 1
1242    fi
1243  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1244      LINK=$FC      LINK=$FC
1245  fi  fi
1246    if test "x$MAKE" = x ; then
1247        MAKE="make"
1248    fi
1249  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1250      CPP="cpp"      CPP=cpp
1251  fi  fi
1252    #EH3 === UGLY ===
1253    #  The following is an ugly little hack to check for $CPP in /lib/ and
1254    #  it should eventually be replaced with a more general function that
1255    #  searches a combo of the user's path and a list of "usual suspects"
1256    #  to find the correct location for binaries such as $CPP.
1257    for i in " " "/lib/" ; do
1258        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1259    done
1260    #EH3 === UGLY ===
1261  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1262  RETVAL=$?  RETVAL=$?
1263  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 725  EOF Line 1274  EOF
1274  else  else
1275      rm -f test_cpp      rm -f test_cpp
1276  fi  fi
1277  if test "x$MAKEDEPEND" = x ; then  look_for_makedepend
1278      MAKEDEPEND=makedepend  if test "x$LN" = x ; then
1279        LN="ln -s"
1280    fi
1281    echo "test" > genmake_test_ln
1282    $LN genmake_test_ln genmake_tlink
1283    RETVAL=$?
1284    if test "x$RETVAL" != x0 ; then
1285        cat <<EOF 1>&2
1286    
1287    Error: The command "ln -s" failed -- please specify a working soft-link
1288      command in the optfile.
1289    
1290    EOF
1291        exit 1
1292  fi  fi
1293    rm -f genmake_test_ln genmake_tlink
1294    
1295    #  Check for broken *.F/*.f handling and fix if possible
1296    check_for_broken_Ff
1297    
1298    if test ! "x$MPI" = x ; then
1299          echo "  Turning on MPI cpp macros"
1300          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1301    fi
1302    
1303  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1304  echo -n "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
1305  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1306        program hello        program hello
1307        call system('echo hi')        call system('echo hi')
1308        end        end
1309  EOF  EOF
1310  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1311  RETVAL=$?  RETVAL=$?
1312  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1313      HAVE_SYSTEM=t      HAVE_SYSTEM=t
# Line 749  else Line 1319  else
1319  fi  fi
1320  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1321    
1322  echo -n "  Do we have the fdate() command using $FC...  "  printf "  Do we have the fdate() command using $FC...  "
1323  cat > genmake_tcomp.f <<EOF  cat > genmake_tcomp.$FS <<EOF
1324        program hello        program hello
1325        CHARACTER(128) string        CHARACTER(128) string
1326        string = ' '        string = ' '
# Line 758  cat > genmake_tcomp.f <<EOF Line 1328  cat > genmake_tcomp.f <<EOF
1328        print *, string        print *, string
1329        end        end
1330  EOF  EOF
1331  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1  $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1332  RETVAL=$?  RETVAL=$?
1333  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1334      HAVE_FDATE=t      HAVE_FDATE=t
# Line 770  else Line 1340  else
1340  fi  fi
1341  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1342    
1343  echo "  The name mangling convention for $FC is...  "  printf "  Do we have the etime() command using $FC...  "
1344  #FC_NAMEMANGLE="#define FC_NAMEMANGLE(X) X ## _"  cat > genmake_tcomp.$FS <<EOF
1345  if test "x$FC_NAMEMANGLE" = x ; then        program hello
1346      get_fortran_c_namemangling        REAL*4 ACTUAL, TARRAY(2)
1347  fi        EXTERNAL ETIME
1348  echo "    '$FC_NAMEMANGLE'"        REAL*4 ETIME
1349  echo "$FC_NAMEMANGLE" > FC_NAMEMANGLE.h.template        actual = etime( tarray )
1350  cmp FC_NAMEMANGLE.h FC_NAMEMANGLE.h.template > /dev/null 2>&1        print *, tarray
1351          end
1352    EOF
1353    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1354  RETVAL=$?  RETVAL=$?
1355  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" = x0 ; then
1356      mv -f FC_NAMEMANGLE.h.template FC_NAMEMANGLE.h      HAVE_ETIME=t
1357        DEFINES="$DEFINES -DHAVE_ETIME"
1358        echo "yes"
1359    else
1360        HAVE_ETIME=
1361        echo "no"
1362    fi
1363    rm -f genmake_tcomp*
1364    
1365    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1366    check_HAVE_CLOC
1367    if test "x$HAVE_CLOC" != x ; then
1368        echo "yes"
1369    else
1370        echo "no"
1371    fi
1372    rm -f genmake_t*
1373    
1374    printf "  Can we use stat() through C calls...  "
1375    check_HAVE_STAT
1376    if test "x$HAVE_STAT" != x ; then
1377        echo "yes"
1378    else
1379        echo "no"
1380    fi
1381    rm -f genmake_t*
1382    
1383    printf "  Can we create NetCDF-enabled binaries...  "
1384    check_netcdf_libs
1385    if test "x$HAVE_NETCDF" != x ; then
1386        echo "yes"
1387    else
1388        echo "no"
1389  fi  fi
1390    
1391    
1392  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
1393  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories:  "
1394  for d in $MODS ; do  for d in $MODS ; do
1395      if test ! -d $d ; then      if test ! -d $d ; then
1396          echo          echo
1397          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
1398          exit 1          exit 1
1399      else      else
1400          echo -n " $d"          printf " $d"
1401          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
1402          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
1403      fi      fi
1404  done  done
1405  echo  echo
1406    
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
1407  if test "x${PLATFORM}" = x ; then  if test "x${PLATFORM}" = x ; then
1408      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
1409  fi  fi
1410    
1411  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1412      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1413        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1414          EXEDIR=../exe          EXEDIR=../exe
1415      else      else
1416          EXEDIR=.          EXEDIR=.
# Line 822  if test "x${TOOLSDIR}" = x ; then Line 1425  if test "x${TOOLSDIR}" = x ; then
1425      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1426  fi  fi
1427  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
1428      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1429      exit 1      exit 1
1430  fi  fi
1431  if test "x$S64" = x ; then  if test "x$S64" = x ; then
1432      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1433        RETVAL=$?
1434        if test "x${RETVAL}" = x0 ; then
1435            S64='$(TOOLSDIR)/set64bitConst.sh'
1436        else
1437            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1438            RETVAL=$?
1439            if test "x${RETVAL}" = x0 ; then
1440                S64='$(TOOLSDIR)/set64bitConst.csh'
1441            else
1442                cat <<EOF
1443    
1444    ERROR: neither of the two default scripts:
1445    
1446        ${TOOLSDIR}/set64bitConst.sh
1447        ${TOOLSDIR}/set64bitConst.csh
1448    
1449      are working so please check paths or specify (with \$S64) a
1450      working version of this script.
1451    
1452    EOF
1453                exit 1
1454            fi
1455        fi
1456  fi  fi
1457    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1458    
1459  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1460    
# Line 836  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 1463  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1463  #  they appear as regular source code  #  they appear as regular source code
1464  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1465      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1466      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
1467      RETVAL=$?      RETVAL=$?
1468      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1469          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1470      else      else
1471          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1472          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1473          exit 1          exit 1
1474      fi      fi
1475  fi  fi
1476    
1477    #same for exch2
1478    if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then
1479        echo "  Making source files in exch2 from  templates"
1480        ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1
1481        RETVAL=$?
1482        if test "x${RETVAL}" = x0 ; then
1483            rm -f make_exch2.errors
1484        else
1485            echo "Error: problem encountered while building source files in exch2:"
1486            cat make_exch2.errors 1>&2
1487            exit 1
1488        fi
1489    fi
1490    
1491  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1492  if  test "x${PDEPEND}" = x ; then  if  test "x${PDEPEND}" = x ; then
1493      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
# Line 873  if test ! "x${RETVAL}" = x0 ; then Line 1514  if test ! "x${RETVAL}" = x0 ; then
1514      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
1515      exit 1      exit 1
1516  fi  fi
1517  source ./.pd_tmp  . ./.pd_tmp
1518  rm -f ./.pd_tmp  rm -f ./.pd_tmp
1519    
1520  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
1521  #  file should eventually be added so that, for convenience, one can  #  file should eventually be added so that, for convenience, one can
1522  #  specify groups of packages using names like "ocean" and "atmosphere".  #  specify groups of packages using names like "ocean" and "atmosphere".
1523  echo  -n "  checking default package list:  "  echo "  checking default package list:  "
1524  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1525      for i in "." $MODS ; do      for i in "." $MODS ; do
1526          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
# Line 892  if test "x${PDEFAULT}" = x ; then Line 1533  if test "x${PDEFAULT}" = x ; then
1533      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1534  fi  fi
1535  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1536      echo "default packages file disabled"      echo "    default packages file disabled"
1537  else  else
1538      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1539          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1540      else      else
1541          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1542          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1543          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1544          RETVAL=$?          RETVAL=$?
1545          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1546              echo -n "Error: can't parse default package list "              printf "Error: can't parse default package list "
1547              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PDEFAULT=\"$PDEFAULT\""
1548              exit 1              exit 1
1549          fi          fi
# Line 911  else Line 1551  else
1551              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1552          done          done
1553          echo "    before group expansion packages are: $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1554          expand_pkg_groups          RET=1
1555            while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
1556          echo "    after group expansion packages are:  $PACKAGES"          echo "    after group expansion packages are:  $PACKAGES"
1557      fi      fi
1558  fi  fi
1559    
1560  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
1561    for i in $PACKAGES ; do
1562        echo $i >> ./.tmp_pack
1563    done
1564    for i in `grep  "-" ./.tmp_pack` ; do
1565        j=`echo $i | sed 's/[-]//'`
1566        DISABLE="$DISABLE $j"
1567    done
1568  pack=  pack=
1569  for p in $PACKAGES ; do  for p in $PACKAGES ; do
1570      addit="t"      addit="t"
# Line 933  PACKAGES="$pack" Line 1581  PACKAGES="$pack"
1581  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1582  echo "" > ./.tmp_pack  echo "" > ./.tmp_pack
1583  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1584    # Test if each explicitly referenced package exists
1585  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1586      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
1587        if test ! -d "$ROOTDIR/pkg/$j" ; then
1588          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""
1589          exit 1          exit 1
1590      fi      fi
1591      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
1592  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
1593  PACKAGES=  PACKAGES=
1594  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
1595      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
1596  done  done
1597    rm -f ./.tmp_pack
1598  echo "    packages are:  $PACKAGES"  echo "    packages are:  $PACKAGES"
1599    
1600    #  Check availability of NetCDF and then either build the MNC template
1601    #  files or delete mnc from the list of available packages.
1602    echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1
1603    RETVAL=$?
1604    if test "x$RETVAL" = x0 ; then
1605        if test "x$HAVE_NETCDF" != xt ; then
1606            cat <<EOF
1607    
1608    *********************************************************************
1609    WARNING: the "mnc" package was enabled but tests failed to compile
1610      NetCDF applications.  Please check that:
1611    
1612      1) NetCDF is correctly installed for this compiler and
1613      2) the LIBS variable (within the "optfile") specifies the correct
1614           NetCDF library to link against.
1615    
1616      Due to this failure, the "mnc" package is now DISABLED.
1617    *********************************************************************
1618    
1619    EOF
1620            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
1621            DISABLE="$DISABLE mnc"
1622        else
1623            ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
1624            RETVAL=$?
1625            if test "x${RETVAL}" = x0 ; then
1626                rm -f make_mnc.errors
1627            else
1628                echo "Error: problem encountered while building source files in pkg/mnc:"
1629                cat make_mnc.errors 1>&2
1630                exit 1
1631            fi
1632        fi
1633    fi
1634    
1635  echo "  applying package dependency rules"  echo "  applying package dependency rules"
1636  ck=  ck=
1637  while test "x$ck" != xtt ; do  while test "x$ck" != xtt ; do
# Line 1012  while test "x$ck" != xtt ; do Line 1696  while test "x$ck" != xtt ; do
1696              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
1697              exit 1              exit 1
1698          fi          fi
1699          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
1700            #i=$(( $i + 1 ))
1701      done      done
1702      ck=$ck"t"      ck=$ck"t"
1703  done  done
# Line 1031  for i in $PACKAGES ; do Line 1716  for i in $PACKAGES ; do
1716      fi      fi
1717  done  done
1718    
   
1719  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
1720  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
 cat <<EOF >$PACKAGES_DOT_H".tmp"  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
1721  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1722  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1723  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1724  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1725  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1726  all_pack=  all_pack=
1727    DISABLED_PACKAGES=
1728  for n in $names ; do  for n in $names ; do
1729      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1730          has_pack="f"          has_pack="f"
# Line 1062  for n in $names ; do Line 1735  for n in $names ; do
1735              fi              fi
1736          done          done
1737          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1738              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
1739              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
1740          fi          fi
1741      fi      fi
1742  done  done
1743  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1744  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1745      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
1746      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1747  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
1748    
1749  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1750      case $i in      case $i in
1751          aim_v23)          aim_v23)
1752              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1753              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
1754              ;;              ;;
1755      esac      esac
1756  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1757    
1758  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
1759    
1760  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1761  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1762  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1763      STANDARDDIRS="eesupp model"      STANDARDDIRS="eesupp model"
1764  fi  fi
1765  for d in $STANDARDDIRS ; do  if test "x$STANDARDDIRS" != x ; then
1766      adr="$ROOTDIR/$d/src"      for d in $STANDARDDIRS ; do
1767      if test ! -d $adr ; then          adr="$ROOTDIR/$d/src"
1768          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1769          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1770          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1771      else              exit 1
1772          SOURCEDIRS="$SOURCEDIRS $adr"          else
1773      fi              SOURCEDIRS="$SOURCEDIRS $adr"
1774      adr="$ROOTDIR/$d/inc"          fi
1775      if test ! -d $adr ; then          adr="$ROOTDIR/$d/inc"
1776          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          if test ! -d $adr ; then
1777          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1778          exit 1              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1779      else              exit 1
1780          INCLUDEDIRS="$INCLUDEDIRS $adr"          else
1781      fi              INCLUDEDIRS="$INCLUDEDIRS $adr"
1782  done          fi
1783        done
1784    fi
1785    
1786  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1787  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
1788  CPP_OPTIONS=  CPP_OPTIONS=
1789    CPP_EEOPTIONS=
1790  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
1791    names=`ls -1 "$ROOTDIR/pkg"`
1792  for i in $spaths ; do  for i in $spaths ; do
1793      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
1794      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
1795          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
1796          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
1797          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1798            for n in $names ; do
1799                test_for_package_in_cpp_options $CPP_OPTIONS $n
1800            done
1801        fi
1802        try="$i/CPP_EEOPTIONS.h"
1803        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1804            echo "    found CPP_EEOPTIONS=\"$try\""
1805            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1806    #**** not yet enabled ****
1807    #        test_for_mpi_in_cpp_eeoptions $try
1808    #**** not yet enabled ****
1809            CPP_EEOPTIONS="$try"
1810      fi      fi
1811  done  done
1812  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
1813      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1814      exit 1      exit 1
1815  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
1816    
1817  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
1818  #  compiler.  #  compiler.
# Line 1165  for i in $SOURCEDIRS ; do Line 1826  for i in $SOURCEDIRS ; do
1826          cat $i/$j >> ad_files          cat $i/$j >> ad_files
1827      done      done
1828  done  done
1829    if test ! "x"$FS = "x.f" ; then
1830  cat <<EOF > adjoint_sed      cat ad_files | sed -e "s/\.f/$FS/g" > ad_files_f
1831  s/call adopen(/call adopen ( mythid,\\      mv -f ad_files_f ad_files
1832       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
1833    
1834  echo  echo
1835  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1836  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1837  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1838      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
1839          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1840      fi      fi
1841  done  done
# Line 1194  rm -rf .links.tmp Line 1845  rm -rf .links.tmp
1845  mkdir .links.tmp  mkdir .links.tmp
1846  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
1847  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
1848  echo -n 'SRCFILES = '    > srclist.inc  printf 'SRCFILES = '    > srclist.inc
1849  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'CSRCFILES = '   > csrclist.inc
1850  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'F90SRCFILES = ' > f90srclist.inc
1851  echo -n 'HEADERFILES = ' > hlist.inc  printf 'HEADERFILES = ' > hlist.inc
1852  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc
1853  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1854  for d in $alldirs ; do  for d in $alldirs ; do
1855      deplist=      deplist=
# Line 1207  for d in $alldirs ; do Line 1858  for d in $alldirs ; do
1858      for sf in $sfiles ; do      for sf in $sfiles ; do
1859          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1860              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1861                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  case $d/$sf in
1862                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1863                  deplist="$deplist $sf"                          ;;
1864                      ./AD_CONFIG.h)
1865                            ;;
1866                      ./FC_NAMEMANGLE.h)
1867                            ;;
1868                      ./BUILD_INFO.h)
1869                            ;;
1870                      *)
1871                            touch .links.tmp/$sf
1872                            deplist="$deplist $sf"
1873                            ;;
1874                    esac
1875                    extn=`echo $sf | $AWK -F. '{print $NF}'`
1876                  case $extn in                  case $extn in
1877                      F)                      F)
1878                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
1879                          echo -n " $sf" >> srclist.inc                          printf " $sf" >> srclist.inc
1880                          ;;                          ;;
1881                      F90)                      F90)
1882                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> f90srclist.inc
1883                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> f90srclist.inc
1884                          ;;                          ;;
1885                      c)                      c)
1886                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.inc
1887                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.inc
1888                          ;;                          ;;
1889                      h)                      h)
1890                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1891                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hlist.inc
1892                          ;;                          ;;
1893                      flow)                      flow)
1894                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> ad_flow_files.inc
1895                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> ad_flow_files.inc
1896                          ;;                          ;;
1897                  esac                  esac
1898              fi              fi
# Line 1249  echo "" >> f90srclist.inc Line 1912  echo "" >> f90srclist.inc
1912  echo "" >> hlist.inc  echo "" >> hlist.inc
1913  echo "" >> ad_flow_files.inc  echo "" >> ad_flow_files.inc
1914    
1915  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
1916      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
1917  fi  fi
1918  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
# Line 1258  echo "#    $MACHINE" >> $MAKEFILE Line 1921  echo "#    $MACHINE" >> $MAKEFILE
1921  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
1922  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
1923  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
1924  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $G2ARGS" >> $MAKEFILE
1925  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1926  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
1927    
1928  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
1929  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
1930  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
1931    
1932  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1933    #
1934    # OPTFILE="$OPTFILE"
1935  #  #
1936  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1937  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 1300  EXE_AD      = ${EXE_AD} Line 1965  EXE_AD      = ${EXE_AD}
1965  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
1966  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
1967    
1968    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1969    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1970    
1971    # These files are created by Makefile
1972    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
1973    
1974  EOF  EOF
1975    
1976  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1317  KPP = ${KPP} Line 1988  KPP = ${KPP}
1988  FC = ${FC}  FC = ${FC}
1989  # Fortran compiler  # Fortran compiler
1990  F90C = ${F90C}  F90C = ${F90C}
1991    # C compiler
1992    CC = ${CC}
1993  # Link editor  # Link editor
1994  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
1995    
1996  # Defines for CPP  # Defines for CPP
1997  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1339  CFLAGS = ${CFLAGS} Line 2012  CFLAGS = ${CFLAGS}
2012  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2013  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2014  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2015  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2016  # Name of the Mekfile  # Name of the Mekfile
2017  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2018    
# Line 1350  cat csrclist.inc      >> $MAKEFILE Line 2023  cat csrclist.inc      >> $MAKEFILE
2023  cat f90srclist.inc    >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
2024  cat hlist.inc         >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
2025  cat ad_flow_files.inc >> $MAKEFILE  cat ad_flow_files.inc >> $MAKEFILE
2026  echo               >> $MAKEFILE  echo >> $MAKEFILE
2027  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE
2028  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F=.'$FS90')' >> $MAKEFILE
2029  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
2030    echo >> $MAKEFILE
2031    echo '.SUFFIXES:' >> $MAKEFILE
2032    echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE
2033  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
2034  rm -f ad_flow_files.inc  rm -f ad_flow_files.inc
2035    
2036  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2037    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2038  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2039  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
2040            @echo Creating \$@ ...
2041          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2042  depend:  depend:
2043          @make links          @make links
2044          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
2045          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2046            -rm -f makedepend.out
2047    
2048  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
2049    
2050  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
2051    
# Line 1380  output.txt: \$(EXECUTABLE) Line 2054  output.txt: \$(EXECUTABLE)
2054          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2055    
2056  clean:  clean:
2057          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
         -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}  
2058  Clean:  Clean:
2059          @make clean          @make clean
2060          @make cleanlinks          @make cleanlinks
2061          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES)
2062            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
2063  CLEAN:  CLEAN:
2064          @make Clean          @make Clean
2065          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2066          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2067          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2068          -rm -f \$(EXECUTABLE) output.txt          -rm -f \$(EXECUTABLE) output.txt STD*
2069    
2070  #eh3 Makefile: makefile  #eh3 Makefile: makefile
2071  makefile:  makefile:
2072          ${0} $@          $THIS_SCRIPT $G2ARGS
2073  cleanlinks:  cleanlinks:
2074          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2075    
2076  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are create by make
2077  .F.f:  ${PACKAGES_DOT_H}:
2078            @echo Creating \$@ ...
2079            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2080    AD_CONFIG.h:
2081            @echo Creating \$@ ...
2082            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2083    FC_NAMEMANGLE.h:
2084            @echo Creating \$@ ...
2085            echo "$FC_NAMEMANGLE" > \$@
2086    
2087    BUILD_INFO.h:
2088            @echo Creating \$@ ...
2089    EOF
2090    
2091    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2092    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2093    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2094    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2095    
2096    cat >>$MAKEFILE <<EOF
2097    
2098    # The normal chain of rules is (  .F - .$FS - .o  )
2099    
2100    ## This nullifies any default implicit rules concerning these two file types:
2101    ## %.o : %.F
2102    
2103    .F.$FS:
2104          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2105  .f.o:  .$FS.o:
2106          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2107  .F90.f90:  .F90.$FS90:
2108          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2109  .f90.o:  .$FS90.o:
2110          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2111  .c.o:  .c.o:
2112          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) -c \$<
2113    
2114  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2115  .F.p:  .F.p:
2116          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2117  .p.f:  .p.$FS:
2118          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2119    
2120  #=========================================  #=========================================
# Line 1441  done Line 2141  done
2141    
2142  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
2143  echo >> $MAKEFILE  echo >> $MAKEFILE
2144  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
2145  AD_FILES=`cat ad_files`  AD_FILES=`cat ad_files`
2146  for i in $AD_FILES ; do  for i in $AD_FILES ; do
2147      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
2148      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
2149  done  done
2150  echo >> $MAKEFILE  echo >> $MAKEFILE
2151  rm -f ad_files  rm -f ad_files
# Line 1454  cat >>$MAKEFILE <<EOF Line 2154  cat >>$MAKEFILE <<EOF
2154    
2155  # ... AD ...  # ... AD ...
2156  adall: ad_taf  adall: ad_taf
2157  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
2158  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
2159    
2160  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2161            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2162          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2163            -rm -f ad_config.template
2164          @make \$(F77FILES)          @make \$(F77FILES)
2165          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2166          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS
2167    
2168  ad_taf_output.f: ad_input_code.f  ad_taf_output.$FS: ad_input_code.$FS
2169          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2170          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2171    
2172    adtafonly:
2173            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2174            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2175    
2176  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_taf: ad_taf_output.o \$(OBJFILES)
2177          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2178    
2179  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
2180          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2181          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2182    
2183  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
2184          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2185    
2186    adonlyfwd:
2187            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2188    
2189    adtrick:
2190            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2191    
2192  # ... FTL ...  # ... FTL ...
2193  ftlall: ftl_taf  ftlall: ftl_taf
2194  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
2195  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
2196    
2197  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)
2198            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2199          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2200            -rm -f ftl_config.template
2201          @make \$(F77FILES)          @make \$(F77FILES)
2202          @make \$(AD_FLOW_FILES)          @make \$(AD_FLOW_FILES)
2203          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2204    
2205  ftl_taf_output.f: ftl_input_code.f  ftl_taf_output.$FS: ftl_input_code.$FS
2206          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2207          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2208    
2209    ftltafonly:
2210            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2211            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2212    
2213  ftl_taf: ftl_taf_output.o \$(OBJFILES)  ftl_taf: ftl_taf_output.o \$(OBJFILES)
2214          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2215    
2216  ftl_tamc_output.f: ftl_input_code.f  ftl_tamc_output.$FS: ftl_input_code.$FS
2217          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2218          cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2219    
2220  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2221          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2222    
2223    
2224  # ... SVD ...  # ... SVD ...
2225  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2226  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2227            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2228  svd_input_code.f: \$(SRCFILES)  svdall: svd_touch svd_taf
2229          cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
2230          @make \$(F77FILES)  svd_taf: \$(OBJFILES)
2231          @make \$(AD_FLOW_FILES)          \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2232          cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
2233            @echo "--->>> Only COMPILE svd code! <<<---"
2234  svd_taf_output.f: svd_input_code.f          @echo "--->>> Assumes you previously <<<---"
2235          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f          @echo "--->>> did make svdtaf        <<<---"
2236          cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
2237    svd_touch:
2238  svd_taf: svd_taf_output.o \$(OBJFILES)          @echo "--->>> Only COMPILE svd code! <<<---"
2239          \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)          @echo "--->>> Assumes you previously <<<---"
2240            @echo "--->>> did make svdtaf        <<<---"
2241            touch ad_taf_output.$FS ftl_taf_output.$FS
2242            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2243            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2244            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2245            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2246            -rm -f ftl_config.template
2247    
2248  #=========================================  #=========================================
2249    
# Line 1537  for i in $KPPFILES ; do Line 2260  for i in $KPPFILES ; do
2260      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2261          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2262      fi      fi
2263      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
2264  done  done
2265    
2266  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1547  for i in $NOOPTFILES ; do Line 2270  for i in $NOOPTFILES ; do
2270      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
2271          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
2272      fi      fi
2273      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
2274      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
2275  done  done
2276    
# Line 1560  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 2283  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
2283    
2284  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
2285    
2286  #  Write the "template" files for the adjoint builds  # Create special header files
2287  cat >AD_CONFIG.template <<EOF  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
2288  C  WARNING: This file is automatically generated by genmake2 and  if test ! -f $PACKAGES_DOT_H ; then
2289  C    used by the Makefile rules.  Please DO NOT EDIT this file      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2290  C    unless you are CERTAIN that you know what you are doing.  else
2291        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
2292  #undef ALLOW_ADJOINT_RUN      RETVAL=$?
2293  #undef ALLOW_TANGENTLINEAR_RUN      if test "x$RETVAL" = x0 ; then
2294  #undef ALLOW_ECCO_OPTIMIZATION          rm -f $PACKAGES_DOT_H".tmp"
2295  EOF      else
2296  cat >ad_config.template <<EOF          mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
2297  C  WARNING: This file is automatically generated by genmake2 and          mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
2298  C    used by the Makefile rules.  Please DO NOT EDIT this file      fi
2299  C    unless you are CERTAIN that you know what you are doing.  fi
2300    if test ! -f AD_CONFIG.h ; then
2301  #define ALLOW_ADJOINT_RUN      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
2302  #undef ALLOW_TANGENTLINEAR_RUN  fi
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >ftl_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #define ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cat >svd_config.template <<EOF  
 C  WARNING: This file is automatically generated by genmake2 and  
 C    used by the Makefile rules.  Please DO NOT EDIT this file  
 C    unless you are CERTAIN that you know what you are doing.  
   
 #undef ALLOW_ADJOINT_RUN  
 #undef ALLOW_TANGENTLINEAR_RUN  
 #undef ALLOW_ECCO_OPTIMIZATION  
 EOF  
 cp AD_CONFIG.template AD_CONFIG.h  
2303    
2304    
2305  #  Write the "state" for future records  #  Write the "state" for future records
2306  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" != xf ; then
2307      echo -n "" > genmake_state      printf "" > genmake_state
2308      for i in $gm_state ; do      for i in $gm_state ; do
2309          t1="t2=\$$i"          t1="t2=\$$i"
2310          eval $t1          eval $t1

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