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revision 1.3 by cnh, Fri Aug 22 20:50:40 2003 UTC revision 1.57 by edhill, Tue Dec 9 18:58:24 2003 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4  #  #
# Line 8  Line 8 
8  #   modified by aja 01/00  #   modified by aja 01/00
9  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
10    
11    # Search for particular CPP #cmds associated with packages
12    # usage: test_for_package_in_cpp_options CPP_file package_name
13    test_for_package_in_cpp_options() {
14        cpp_options=$1
15        pkg=$2
16        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99
17        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99
18        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99
19        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99
20    }
21    
22    # Search for particular CPP #cmds associated with MPI
23    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
24    test_for_mpi_in_cpp_eeoptions() {
25        cpp_options=$1
26        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99
27        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99
28        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99
29        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99
30    }
31    
32    # Search for particular string in a file. Return 1 if detected, 0 if not
33    # usage: test_for_string_in_file file string
34    test_for_string_in_file() {
35        file=$1
36        strng=$2
37        grep -i "$strng" $file > /dev/null 2>&1
38        RETVAL=$?
39        if test "x${RETVAL}" = x0 ; then
40            echo -n "Error: In $file there is an illegal line: "
41            grep -i "$strng" $file
42            return 1
43        fi
44        return 0
45    }
46    
47    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
48    # the package list.
49    expand_pkg_groups() {
50        new_packages=
51        PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"
52        if test -r $PKG_GROUPS ; then
53            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
54            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
55            matched=0
56            for i in $PACKAGES ; do
57                line=`grep "^ *$i" ./p2.tmp`
58                RETVAL=$?
59                if test "x$RETVAL" = x0 ; then
60                    matched=1
61                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
62                    echo "    replacing \"$i\" with: $replace"
63                    new_packages="$new_packages $replace"
64                else
65                    new_packages="$new_packages $i"
66                fi
67            done
68            PACKAGES=$new_packages
69            rm -f ./p[1,2].tmp
70        else
71            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
72        fi
73    }
74    
75  # Guess possible config options for this host  # Guess possible config options for this host
76  find_possible_configs()  {  find_possible_configs()  {
77    
78      p_PLATFORM=`uname`"-"`uname -m`      tmp1=`uname`"_"`uname -m`
79      echo "The platform appears to be:"      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
80      echo "  "$p_PLATFORM      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
81        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
82      p_LN=      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
83        PLATFORM=$tmp2
84        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
85        echo "  The platform appears to be:  $PLATFORM"
86        
87      echo "test" > test      echo "test" > test
88      ln -s ./test link      ln -s ./test link
89      RETVAL=$?      RETVAL=$?
90      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
91          p_LN="ln -s"          LN="ln -s"
92        else
93            echo "Error: \"ln -s\" does not appear to work on this system!"
94            echo "  For help, please contact <MITgcm-support@mitgcm.org>."
95            exit 1
96      fi      fi
97      rm -f test link      rm -f test link
98    
99      p_CPP=`which cpp`      if test "x$CPP" = x ; then
100                CPP="cpp -traditional -P"
101      RETVAL=$?      fi
102      if test "x${RETVAL}" = x0 ; then  
103          p_LN="ln -s"      # makedepend is not always available
104        if test "x${MAKEDEPEND}" = x ; then
105          which makedepend >& /dev/null
106          RETVAL=$?
107          if test "x${RETVAL}" = x1 ; then
108             echo "    makedepend was not found. Using xmakedpend instead."
109             MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
110          fi
111      fi      fi
     rm -f test link  
112    
113      # look for possible fortran compilers      # look for possible fortran compilers
114        tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"
115      p_FC=      p_FC=
116      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      for c in $tmp ; do
117          which $c > /dev/null 2>&1          rm -f ./hello.f ./hello
118            cat >> hello.f <<EOF
119          program hello
120          do i=1,3
121            print *, 'hello world : ', i
122          enddo
123          end
124    EOF
125            $c -o hello hello.f > /dev/null 2>&1
126          RETVAL=$?          RETVAL=$?
127          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
128              p_FC="$p_FC $c"              p_FC="$p_FC $c"
129          fi          fi
130      done      done
131      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./hello.f ./hello
132      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
133          echo "  None found!!!"          cat 1>&2 <<EOF
134      else  
135          echo "  "$p_FC  Error: No Fortran compilers were found in your path.  Please specify one using:
136      fi  
137        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
138        2) a command-line option (eg. "-fc NAME"), or
139        3) the MITGCM_FC environment variable.
140    
     # look for possible MPI libraries  
     mpi_libs=  
     mpi_fort=`which mpif77 2>/dev/null`  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         cat >>test.f <<EOF  
       PROGRAM HELLO  
       DO 10, I=1,10  
       PRINT *,'Hello World'  
    10 CONTINUE  
       STOP  
       END  
141  EOF  EOF
142          eval "$mpi_fort -showme test.f > out"          exit 1
143          RETVAL=$?      else
144          if test "x${RETVAL}" = x0 ; then          echo "  The possible FORTRAN compilers found in your path are:"
145              a=`cat out`          echo "   "$p_FC
146              for i in $a ; do          if test "x$FC" = x ; then
147                  case $i in              FC=`echo $p_FC | $AWK '{print $1}'`
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
148          fi          fi
         rm -f test.f out  
149      fi      fi
150    
151  }      for i in $p_FC ; do
152            p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
153            if test -r $p_OF ; then
154                OPTFILE=$p_OF
155                echo "  The options file:  $p_OF"
156                echo "    appears to match so we'll use it."
157                break
158            fi
159        done
160        if test "x$OPTFILE" = x ; then
161            cat 1>&2 <<EOF
162    
163  parse_options()  {  Error: No options file was found in:  $ROOTDIR/tools/build_options/
164      that matches this platform ("$PLATFORM") and the compilers found in
165      your path.  Please specify an "optfile" using:
166    
167      ac_prev=      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
168      for ac_option in "${OPTIONS[@]}" ; do      2) the MITGCM_OF environment variable.
169    
170      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
171    
172    EOF
173            exit 1
174        fi
175        
176    #     # look for possible MPI libraries
177    #     mpi_libs=
178    #     mpi_fort=`which mpif77 2>/dev/null`
179    #     RETVAL=$?
180    #     if test "x${RETVAL}" = x0 ; then
181    #       cat >>test.f <<EOF
182    #       PROGRAM HELLO
183    #       DO 10, I=1,10
184    #       PRINT *,'Hello World'
185    #    10 CONTINUE
186    #       STOP
187    #       END
188    # EOF
189    #       eval "$mpi_fort -showme test.f > out"
190    #       RETVAL=$?
191    #       if test "x${RETVAL}" = x0 ; then
192    #           a=`cat out`
193    #           for i in $a ; do
194    #               case $i in
195    #                   -*)
196    #                       mpi_libs="$mpi_libs $i" ;;
197    #               esac
198    #           done
199    #           echo "The MPI libs appear to be:"
200    #           echo "  "$mpi_libs
201    #       fi
202    #       rm -f test.f out
203    #     fi
204    
         # echo "ac_option = :$ac_option:"  
           
         # If the previous option needs an argument, assign it.  
         if test -n "$ac_prev"; then  
             eval "$ac_prev=\$ac_option"  
             ac_prev=  
             continue  
         fi  
           
         ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`  
           
         case $ac_option in  
               
             -help | --help | -h | --h)  
                 usage ;;  
               
             -nooptfile | --nooptfile)  
                 OPTFILE="NONE" ;;  
             -optfile | --optfile | -of | --of)  
                 ac_prev=optfile ;;  
             -optfile=* | --optfile=* | -of=* | --of=*)  
                 OPTFILE=$ac_optarg ;;  
               
             -pdepend | --pdepend)  
                 ac_prev=pdepend ;;  
             -pdepend=* | --pdepend=*)  
                 PDEPEND=$ac_optarg ;;  
               
             -pdefault | --pdefault)  
                 ac_prev=pdefault ;;  
             -pdefault=* | --pdefault=*)  
                 PDEFAULT=$ac_optarg ;;  
               
             -makefile | -ma)  
                 ac_prev=makefile ;;  
             --makefile=* | -ma=*)  
                 MAKEFILE=$ac_optarg ;;  
               
             -platform | --platform | -pl | --pl)  
                 ac_prev=platform ;;  
             -platform=* | --platform=* | -pl=* | --pl=*)  
                 PLATFORM=$ac_optarg ;;  
   
             -rootdir | --rootdir | -rd | --rd)  
                 ac_prev=rootdir ;;  
             -rootdir=* | --rootdir=* | -rd=* | --rd=*)  
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
205  }  }
206    
207  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 210  get_pdepend_list()  {
210      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
211      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
212      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
213          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \
214          > ./.pd_tmp          > ./.pd_tmp
215      source ./.pd_tmp      . ./.pd_tmp
216      rm -f ./.pd_tmp      rm -f ./.pd_tmp
217    
218      echo -n "PNAME = "${}      echo -n "PNAME = "${}
# Line 210  get_pdepend_list()  { Line 221  get_pdepend_list()  {
221    
222  #  Explain usage  #  Explain usage
223  usage()  {  usage()  {
224      echo  cat <<EOF
225      echo "Usage: "$0" [OPTIONS]"  
226      echo "  where [OPTIONS] can be:"  Usage: "$0" [OPTIONS]
227      echo    where [OPTIONS] can be:
228      echo "    -help | --help | -h | --h"  
229      echo "    -nooptfile | --nooptfile"      -help | --help | -h | --h
230      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"            Print this help message and exit.
231      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  
232      echo "    -pdepend NAME | --pdepend NAME"      -nooptfile | --nooptfile
233      echo "      -pdepend=NAME | --pdepend=NAME"        -optfile NAME | --optfile NAME | -of NAME | --of NAME
234      echo "    -pdefault NAME | --pdefault NAME"        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
235      echo "      -pdefault=NAME | --pdefault=NAME"            Use "NAME" as the optfile.  By default, an attempt will be
236      echo "    -makefile NAME | -ma NAME"            made to find an appropriate "standard" optfile in the
237      echo "      --makefile=NAME | -ma=NAME"            tools/build_options/ directory.
238      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  
239      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"      -pdepend NAME | --pdepend NAME
240      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"        -pdepend=NAME | --pdepend=NAME
241      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"            Get package dependency information from "NAME".
242      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  
243      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"      -pdefault NAME | --pdefault NAME
244      echo "    -disable NAME | --disable NAME"        -pdefault=NAME | --pdefault=NAME
245      echo "      -disable=NAME | --disable=NAME"            Get the default package list from "NAME".
246      echo "    -enable NAME | --enable NAME"  
247      echo "      -enable=NAME | --enable=NAME"      -make NAME | -m NAME
248      echo "    -noopt NAME | --noopt NAME"        --make=NAME | -m=NAME
249      echo "      -noopt=NAME | --noopt=NAME"            Use "NAME" for the MAKE program. The default is "make" but
250  #    echo "    -cpp NAME | --cpp NAME"            many platforms, "gmake" is the preferred choice.
251  #    echo "      -cpp=NAME | --cpp=NAME"  
252      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      -makefile NAME | -mf NAME
253      echo "      -fc=NAME | --fc=NAME"        --makefile=NAME | -mf=NAME
254      echo "    -[no]ieee | --[no]ieee"            Call the makefile "NAME".  The default is "Makefile".
255      echo "    -[no]mpi | --[no]mpi"  
256      echo "    -[no]jam | --[no]jam"      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
257      echo        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
258      echo "  and NAME is a string such as:"            Specify the location of the MITgcm ROOTDIR as "NAME".
259      echo            By default, genamke will try to find the location by
260      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"            looking in parent directories (up to the 5th parent).
261      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
262      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"      -mods NAME | --mods NAME | -mo NAME | --mo NAME
263      echo        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
264      echo "  which, depending upon your shell, may need to be single-quoted"            Here, "NAME" specifies a list of directories that are
265      echo "  if it contains spaces, dashes, or other special characters."            used for additional source code.  Files found in the
266              "mods list" are given preference over files of the same
267              name found elsewhere.
268    
269        -disable NAME | --disable NAME
270          -disable=NAME | --disable=NAME
271              Here "NAME" specifies a list of packages that we don't
272              want to use.  If this violates package dependencies,
273              genamke will exit with an error message.
274    
275        -enable NAME | --enable NAME
276          -enable=NAME | --enable=NAME
277              Here "NAME" specifies a list of packages that we wish
278              to specifically enable.  If this violates package
279              dependencies, genamke will exit with an error message.
280    
281        -standarddirs NAME | --standarddirs NAME
282          -standarddirs=NAME | --standarddirs=NAME
283              Here, "NAME" specifies a list of directories to be
284              used as the "standard" code.
285    
286        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
287          -fc=NAME | --fc=NAME
288              Use "NAME" as the fortran compiler.  By default, genmake
289              will search for a working compiler by trying a list of
290              "usual suspects" such as g77, f77, etc.
291    
292        -[no]ieee | --[no]ieee
293              Do or don't use IEEE numerics.  Note that this option
294              *only* works if it is supported by the OPTFILE that
295              is being used.
296    
297      While it is most often a single word, the "NAME" variables specified
298      above can in many cases be a space-delimited string such as:
299    
300        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
301        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
302        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
303    
304      which, depending upon your shell, may need to be single-quoted.
305    
306      For more detailed genmake documentation, please see:
307    
308        http://mitgcm.org/devel_HOWTO/
309    
310    EOF
311    
312      exit 1      exit 1
313  }  }
314    
315  # Dump all important state  #  Build a CPP macro to automate calling C routines from FORTRAN
316  dump_state()  {  get_fortran_c_namemangling()  {
317      fname=$1      default_nm="#define FC_NAMEMANGLE(X) X ## _"
318      echo " " > $fname      
319        cat > genmake_test.c <<EOF
320    void tcall( char * string ) { tsub( string ); }
321    EOF
322        $MAKE genmake_test.o >> genmake_warnings 2>&1
323      RETVAL=$?      RETVAL=$?
324      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" != x0 ; then
325          echo "Error: cannot write to $fname"          FC_NAMEMANGLE=$default_nm
326          exit 1          cat <<EOF>> genmake_errors
327    
328    WARNING: C test compile fails
329    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
330    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
331    EOF
332            return 1
333        fi
334        c_tcall=`nm genmake_test.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
335        RETVAL=$?
336        if test "x$RETVAL" != x0 ; then
337            FC_NAMEMANGLE=$default_nm
338            cat <<EOF>> genmake_warnings
339    
340    WARNING: The "nm" command failed.
341    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
342    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
343    EOF
344            return 1
345        fi
346        cat > genmake_tcomp.f <<EOF
347          subroutine tcall( string )
348          character*(*) string
349          call tsub( string )
350          end
351    EOF
352        $FC $FFLAGS $DEFINES -c genmake_tcomp.f >> genmake_warnings 2>&1
353        RETVAL=$?
354        if test "x$RETVAL" != x0 ; then
355            FC_NAMEMANGLE=$default_nm
356            cat <<EOF>> genmake_warnings
357    
358    WARNING: FORTRAN test compile fails -- please see "genmake_errors"
359    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
360    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
361    EOF
362            return 1
363        fi
364        f_tcall=`nm genmake_tcomp.o | grep 'T ' | grep tcall | cut -d ' ' -f 3`
365        RETVAL=$?
366        if test "x$RETVAL" != x0 ; then
367            FC_NAMEMANGLE=$default_nm
368            cat <<EOF>> genmake_warnings
369    
370    WARNING: The "nm" command failed.
371    WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
372    WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
373    EOF
374            return 1
375      fi      fi
376      echo "makefile "$makefile > $fname  
377        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
378        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
379        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
380        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
381    
382        nmangle="X"
383        if test "x$c_a" != "x$f_a" ; then
384            comm="echo x$f_a | sed -e 's|x$c_a||'"
385            a=`eval $comm`
386            nmangle="$a ## $nmangle"
387        fi
388        if test "x$c_b" != "x$f_b" ; then
389            comm="echo x$f_b | sed -e 's|x$c_b||'"
390            b=`eval $comm`
391            nmangle="$nmangle ## $b"
392        fi
393    
394        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
395    
396        #  cleanup the testing files
397        rm -f genmake_tcomp.* genmake_test.*
398  }  }
399    
400    
401  #eh3 # This is the generic configuration.  check_HAVE_CLOC()  {
402  #eh3 set LN         = ( 'ln -s' )      get_fortran_c_namemangling
403  #eh3 set CPP        = ( '/lib/cpp -P' )      cat <<EOF > genmake_tc_1.c
404  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  $FC_NAMEMANGLE
405  #eh3 set KPP        = (  )  #include <stdio.h>
406  #eh3 set FC         = ( 'f77' )  #include <stdlib.h>
407  #eh3 set LINK       = $FC  #include <unistd.h>
408  #eh3 set MAKEDEPEND = ( 'makedepend' )  #include <assert.h>
409  #eh3 set INCLUDES   = ( -I. )  #include <sys/time.h>
410  #eh3 set FFLAGS     = (  )  void FC_NAMEMANGLE(cloc) ( double *curtim )
411  #eh3 set FOPTIM     = (  )  {
412  #eh3 set CFLAGS     = (  )   struct timeval tv1;
413  #eh3 set KFLAGS1    = (  )   gettimeofday(&tv1 , (void *)NULL );
414  #eh3 set KFLAGS2    = (  )   *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
415  #eh3 set LIBS       = (  )   *curtim = *curtim/1.E6;
416  #eh3 set KPPFILES   = (  )  }
417  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  EOF
418  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      make genmake_tc_1.o >> genmake_tc.log 2>&1
419        RET_C=$?
420        cat <<EOF > genmake_tc_2.f
421          program hello
422          Real*8 wtime
423          external cloc
424          call cloc(wtime)
425          print *," HELLO WORLD", wtime
426          end program hello
427    EOF
428        $FC $FFLAGS -o genmake_tc genmake_tc_2.f genmake_tc_1.o >> genmake_tc.log 2>&1
429        RET_F=$?
430        test -x ./genmake_tc  &&  ./genmake_tc >> genmake_tc.log 2>&1
431        RETVAL=$?
432        if test "x$RETVAL" = x0 ; then
433            HAVE_CLOC=t
434            DEFINES="$DEFINES -DHAVE_CLOC"
435        fi
436        rm -f genmake_tc*
437    }
438    
439    
440  #  Set defaults here  #  Set defaults here
441    COMMANDL="$0 $@"
442    
443  PLATFORM=  PLATFORM=
444  LN=  LN=
445  S64=  S64=
446  KPP=  KPP=
447  FC=  FC=
448  LINK=  LINK=
449    # DEFINES="-DWORDLENGTH=4"
450    DEFINES=
451  PACKAGES=  PACKAGES=
452  ENABLE=  ENABLE=
453  DISABLE=  DISABLE=
454  MAKEFILE=  MAKEFILE=
455  MAKEDEPEND=  MAKEDEPEND=
456  PDEPEND=  PDEPEND=
457    DUMPSTATE=t
458  PDEFAULT=  PDEFAULT=
459  OPTFILE=  OPTFILE=
460  INCLUDES="-I."  INCLUDES="-I."
# Line 313  KPPFILES= Line 468  KPPFILES=
468  NOOPTFILES=  NOOPTFILES=
469  NOOPTFLAGS=  NOOPTFLAGS=
470    
471    # DEFINES checked by test compilation
472    HAVE_SYSTEM=
473    HAVE_FDATE=
474    FC_NAMEMANGLE=
475    HAVE_CLOC=
476    
477  MODS=  MODS=
478  TOOLSDIR=  TOOLSDIR=
479  SOURCEDIRS=  SOURCEDIRS=
480  INCLUDEDIRS=  INCLUDEDIRS=
481    STANDARDDIRS="USE_THE_DEFAULT"
482    
483  PWD=`pwd`  PWD=`pwd`
484  MAKE=make  MAKE=make
485    AWK=awk
486  THISHOSTNAME=`hostname`  THISHOSTNAME=`hostname`
487  THISCWD=`pwd`  THISCWD=`pwd`
488  THISDATE=`date`  THISDATE=`date`
489  MACHINE=`uname -a`  MACHINE=`uname -a`
490    EXECUTABLE=
491    EXEHOOK=
492    EXEDIR=
493    PACKAGES_CONF=
494    IEEE=
495    if test "x$MITGCM_IEEE" != x ; then
496        IEEE=$MITGCM_IEEE
497    fi
498    
499    AUTODIFF_PKG_USED=f
500    AD_OPTFILE=
501    TAF=
502    AD_TAF_FLAGS=
503    FTL_TAF_FLAGS=
504    SVD_TAF_FLAGS=
505    TAF_EXTRA=
506    TAMC=
507    AD_TAMC_FLAGS=
508    FTL_TAF_FLAGS=
509    SVD_TAMC_FLAGS=
510    TAMC_EXTRA=
511    
512    
513    #  The following state can be set directly by command-line switches
514    gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"
515    gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"
516    
517    #  The following state is not directly set by command-line switches
518    gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "
519    gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"
520    gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"
521    gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"
522    gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE"
523    
524    #  The following are all related to adjoint/tangent-linear stuff
525    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
526    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
527    gm_s12="TAF_EXTRA TAMC_EXTRA"
528    
529    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"
530    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
531    
532    cat <<EOF
533    
534    GENMAKE :
535    
536    A program for GENerating MAKEfiles for the MITgcm project.  For a
537    quick list of options, use "genmake -h" or for more detail see:
538    
539      http://mitgcm.org/devel_HOWTO/
540    
541    EOF
542    
 echo  
543  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
544  gm_local="./gm_local"  gm_local="genmake_local"
545    for i in . $MODS ; do
546        if test -r $i/$gm_local ; then
547            . $i/$gm_local
548            break
549        fi
550    done
551  echo -n "  getting local config information:  "  echo -n "  getting local config information:  "
552  if test -e $gm_local ; then  if test -e $gm_local ; then
553      echo "using $gm_local"      echo "using $gm_local"
554      source $gm_local      . $gm_local
555      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
556      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
557  else  else
# Line 349  fi Line 569  fi
569  #   n=$(( $n + 1 ))  #   n=$(( $n + 1 ))
570  #done  #done
571  #parse_options  #parse_options
   
572  ac_prev=  ac_prev=
573  for ac_option ; do  for ac_option ; do
574    
# Line 370  for ac_option ; do Line 589  for ac_option ; do
589          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
590              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
591          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
592              ac_prev=optfile ;;              ac_prev=OPTFILE ;;
593          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
594              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
595                    
596            -adoptfile | --adoptfile | -adof | --adof)
597                ac_prev=AD_OPTFILE ;;
598            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
599                AD_OPTFILE=$ac_optarg ;;
600            
601          -pdepend | --pdepend)          -pdepend | --pdepend)
602              ac_prev=pdepend ;;              ac_prev=PDEPEND ;;
603          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
604              PDEPEND=$ac_optarg ;;              PDEPEND=$ac_optarg ;;
605                    
606          -pdefault | --pdefault)          -pdefault | --pdefault)
607              ac_prev=pdefault ;;              ac_prev=PDEFAULT ;;
608          -pdefault=* | --pdefault=*)          -pdefault=* | --pdefault=*)
609              PDEFAULT=$ac_optarg ;;              PDEFAULT=$ac_optarg ;;
610                    
611          -makefile | -ma)          -make | --make | -m | --m)
612              ac_prev=makefile ;;              ac_prev=MAKE ;;
613          --makefile=* | -ma=*)          -make=* | --make=* | -m=* | --m=*)
614                MAKE=$ac_optarg ;;
615            
616            -makefile | --makefile | -ma | --ma)
617                ac_prev=MAKEFILE ;;
618            -makefile=* | --makefile=* | -ma=* | --ma=*)
619              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
620                    
621          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
622              ac_prev=platform ;;              echo "ERROR: The platform option has been removed.  Please specify"
623          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
624              PLATFORM=$ac_optarg ;;              echo
625                usage
626                ;;
627                    
628          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
629              ac_prev=rootdir ;;              ac_prev=ROOTDIR ;;
630          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
631              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
632                    
633          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
634              ac_prev=mods ;;              ac_prev=MODS ;;
635          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
636              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
637                    
638          -disable | --disable)          -disable | --disable)
639              ac_prev=disable ;;              ac_prev=DISABLE ;;
640          -disable=* | --disable=*)          -disable=* | --disable=*)
641              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
642                    
643          -enable | --enable)          -enable | --enable)
644              ac_prev=enable ;;              ac_prev=ENABLE ;;
645          -enable=* | --enable=*)          -enable=* | --enable=*)
646              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
647                    
648          -noopt | --noopt)          -standarddirs | --standarddirs)
649              ac_prev=noopt ;;              ac_prev=STANDARDDIRS ;;
650          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
651              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
652            
653  #           -cpp | --cpp)  #           -cpp | --cpp)
654  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
655  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
656  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
657                            
658          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
659              ac_prev=fc ;;              ac_prev=FC ;;
660          -fc=* | --fc=*)          -fc=* | --fc=*)
661              FC=$ac_optarg ;;              FC=$ac_optarg ;;
662                    
663          -ieee | --ieee)          -ieee | --ieee)
664              IEEE=1 ;;              IEEE=true ;;
665          -noieee | --noieee)          -noieee | --noieee)
666              IEEE=0 ;;              IEEE= ;;
           
         -mpi | --mpi)  
             MPI=1 ;;  
         -nompi | --nompi)  
             MPI=0 ;;  
           
         -jam | --jam)  
             JAM=1 ;;  
         -nojam | --nojam)  
             JAM=0 ;;  
667                    
668    #       -jam | --jam)
669    #           JAM=1 ;;
670    #       -nojam | --nojam)
671    #           JAM=0 ;;
672            
673            -ds | --ds)
674                DUMPSTATE=t ;;
675            
676            -taf_extra | --taf_extra)
677                ac_prev=TAF_EXTRA ;;
678            -taf_extra=* | --taf_extra=*)
679                TAF_EXTRA=$ac_optarg ;;
680    
681            -tamc_extra | --tamc_extra)
682                ac_prev=TAMC_EXTRA ;;
683            -tamc_extra=* | --tamc_extra=*)
684                TAMC_EXTRA=$ac_optarg ;;
685    
686          -*)          -*)
687              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
688              usage              usage
# Line 458  for ac_option ; do Line 697  for ac_option ; do
697            
698  done  done
699    
700    if test -f ./.genmakerc ; then
701        echo
702        echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
703        echo "  file.  This file format is no longer supported.  Please see:"
704        echo
705        echo "    http://mitgcm.org/devel_HOWTO/"
706        echo
707        echo "  for directions on how to setup and use the new \"genmake2\" input"
708        echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."
709        echo
710    fi
711    
712    if test "x${ROOTDIR}" = x ; then
713        if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then
714            ROOTDIR=".."
715        else
716            for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
717                if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
718                    ROOTDIR=$d
719                    echo -n "Warning:  ROOTDIR was not specified but there appears to be"
720                    echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."
721                    break
722                fi
723            done
724        fi
725    fi
726    if test "x${ROOTDIR}" = x ; then
727        echo "Error: Cannot determine ROOTDIR for MITgcm code."
728        echo "  Please specify a ROOTDIR using either an options "
729        echo "  file or a command-line option."
730        exit 1
731    fi
732    if test ! -d ${ROOTDIR} ; then
733        echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"
734        exit 1
735    fi
736    
737  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:  "
738  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
739      echo "Warning: no OPTFILE specified so we'll look for possible settings"      if test "x$MITGCM_OF" = x ; then
740      printf "\n===  Searching for possible settings for OPTFILE  ===\n"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
741      find_possible_configs          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
742  else          find_possible_configs
     if test "x$OPTFILE" = xNONE ; then  
         echo "    OPTFILE=NONE so we'll try to use default settings"  
743      else      else
744          if test -f "$OPTFILE" -a -r "$OPTFILE" ; then          OPTFILE=$MITGCM_OF
745              echo "    using OPTFILE=\"$OPTFILE\""      fi
746              source "$OPTFILE"  fi
747              RETVAL=$?  if test "x$OPTFILE" != xNONE ; then
748              if test "x$RETVAL" != x0 ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
749                  echo -n "Error: failed to source OPTFILE \"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
750                  echo "--please check that variable syntax is bash-compatible"          . "$OPTFILE"
751                  exit 1          RETVAL=$?
752              fi          if test "x$RETVAL" != x0 ; then
753          else              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""
754              echo "Error: can't read OPTFILE=\"$OPTFILE\""              echo "--please check that variable syntax is bash-compatible"
755                exit 1
756            fi
757            if test "x$DUMPSTATE" != xf ; then
758                cp -f $OPTFILE "genmake_optfile"
759            fi
760        else
761            echo "Error: can't read OPTFILE=\"$OPTFILE\""
762            exit 1
763        fi
764    fi
765    
766    echo "  getting AD_OPTFILE information:  "
767    if test "x${AD_OPTFILE}" = x ; then
768        if test "x$MITGCM_AD_OF" = x ; then
769            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
770        else
771            AD_OPTFILE=$MITGCM_AD_OF
772        fi
773    fi
774    if test "x${AD_OPTFILE}" != xNONE ; then
775        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
776            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
777            . "$AD_OPTFILE"
778            RETVAL=$?
779            if test "x$RETVAL" != x0 ; then
780                echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
781                echo "--please check that variable syntax is bash-compatible"
782              exit 1              exit 1
783          fi          fi
784            if test "x$DUMPSTATE" != xf ; then
785                cp -f $AD_OPTFILE "genmake_ad_optfile"
786            fi
787        else
788            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
789            exit 1
790      fi      fi
791  fi  fi
792    
793    #  Check that FC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
794    #  either set defaults or complain and abort!
795    if test "x$FC" = x ; then
796        cat <<EOF 1>&2
797    
798    Error: no Fortran compiler: please specify using one of the following:
799      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
800      2) the "-fc=XXX" command-line option
801      3) the "./genmake_local" file
802    EOF
803        exit 1
804    fi
805    if test "x$LINK" = x ; then
806        LINK=$FC
807    fi
808    if test "x$CPP" = x ; then
809        CPP="cpp"
810    fi
811    if test "x$MAKE" = x ; then
812        MAKE="make"
813    fi
814    echo "#define A a" | $CPP > test_cpp 2>&1
815    RETVAL=$?
816    if test "x$RETVAL" != x0 ; then
817        cat <<EOF 1>&2
818    
819    Error: C pre-processor "$CPP" failed the test case: please specify using:
820    
821      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
822      2) the "./genmake_local" file
823      3) with the CPP environment variable
824    
825    EOF
826        exit 1
827    else
828        rm -f test_cpp
829    fi
830    if test "x$MAKEDEPEND" = x ; then
831        MAKEDEPEND=makedepend
832    fi
833    if test "x$LN" = x ; then
834        LN="ln -s"
835    fi
836    echo "test" > genmake_test_ln
837    $LN genmake_test_ln genmake_tlink
838    RETVAL=$?
839    if test "x$RETVAL" != x0 ; then
840        cat <<EOF 1>&2
841    
842    Error: The command "ln -s" failed -- please specify a working soft-link
843      command in the optfile.
844    
845    EOF
846        exit 1
847    fi
848    rm -f genmake_test_ln genmake_tlink
849    
850    
851    printf "\n===  Checking system libraries  ===\n"
852    echo -n "  Do we have the system() command using $FC...  "
853    cat > genmake_tcomp.f <<EOF
854          program hello
855          call system('echo hi')
856          end
857    EOF
858    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
859    RETVAL=$?
860    if test "x$RETVAL" = x0 ; then
861        HAVE_SYSTEM=t
862        DEFINES="$DEFINES -DHAVE_SYSTEM"
863        echo "yes"
864    else
865        HAVE_SYSTEM=
866        echo "no"
867    fi
868    rm -f genmake_tcomp*
869    
870    echo -n "  Do we have the fdate() command using $FC...  "
871    cat > genmake_tcomp.f <<EOF
872          program hello
873          CHARACTER(128) string
874          string = ' '
875          call fdate( string )
876          print *, string
877          end
878    EOF
879    $FC $FFLAGS $DEFINES -o genmake_tcomp genmake_tcomp.f > genmake_tcomp.log 2>&1
880    RETVAL=$?
881    if test "x$RETVAL" = x0 ; then
882        HAVE_FDATE=t
883        DEFINES="$DEFINES -DHAVE_FDATE"
884        echo "yes"
885    else
886        HAVE_FDATE=
887        echo "no"
888    fi
889    rm -f genmake_tcomp*
890    
891    echo -n "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
892    check_HAVE_CLOC
893    if test "x$HAVE_CLOC" != x ; then
894        echo "yes"
895    else
896        echo "no"
897    fi
898    rm -f genmake_t*
899    
900    
901  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
902  echo -n "  Adding MODS directories:  "  echo -n "  Adding MODS directories:  "
903  for d in $MODS ; do  for d in $MODS ; do
# Line 505  if test "x${PLATFORM}" = x ; then Line 920  if test "x${PLATFORM}" = x ; then
920      PLATFORM=$p_PLATFORM      PLATFORM=$p_PLATFORM
921  fi  fi
922    
 if test "x${ROOTDIR}" = x ; then  
     if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then  
         ROOTDIR=".."  
     else  
         for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do  
             if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then  
                 ROOTDIR=$d  
                 echo -n "Warning:  ROOTDIR was not specified but there appears to be"  
                 echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."  
                 break  
             fi  
         done  
     fi  
 fi  
 if test "x${ROOTDIR}" = x ; then  
     echo "Error: Cannot determine ROOTDIR for MITgcm code."  
     echo "  Please specify a ROOTDIR using either an options "  
     echo "  file or a command-line option."  
     exit 1  
 fi  
 if test ! -d ${ROOTDIR} ; then  
     echo "Error: the specified ROOTDIR (\"$ROOTDIR\") does not exist!"  
     exit 1  
 fi  
   
923  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
924      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then
925          EXEDIR=../exe          EXEDIR=../exe
# Line 549  if test ! -d ${TOOLSDIR} ; then Line 939  if test ! -d ${TOOLSDIR} ; then
939      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"
940      exit 1      exit 1
941  fi  fi
942    if test "x$S64" = x ; then
943        S64='$(TOOLSDIR)/set64bitConst.sh'
944    fi
945    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
946    
947  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
948    
# Line 557  EXECUTABLE=${EXECUTABLE:-mitgcmuv} Line 951  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
951  #  they appear as regular source code  #  they appear as regular source code
952  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
953      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
954      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1
955      RETVAL=$?      RETVAL=$?
956      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
957          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 587  echo "  getting package dependency info Line 981  echo "  getting package dependency info
981  #  Strip the comments and then convert the dependency file into  #  Strip the comments and then convert the dependency file into
982  #  two arrays: PNAME, DNAME  #  two arrays: PNAME, DNAME
983  cat $PDEPEND | sed -e 's/#.*$//g' \  cat $PDEPEND | sed -e 's/#.*$//g' \
984      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
985      > ./.pd_tmp      > ./.pd_tmp
986  RETVAL=$?  RETVAL=$?
987  if test ! "x${RETVAL}" = x0 ; then  if test ! "x${RETVAL}" = x0 ; then
988      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""
989      exit 1      exit 1
990  fi  fi
991  source ./.pd_tmp  . ./.pd_tmp
992  rm -f ./.pd_tmp  rm -f ./.pd_tmp
993    
994  echo  -n "  checking default package list:  "  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"
995    #  file should eventually be added so that, for convenience, one can
996    #  specify groups of packages using names like "ocean" and "atmosphere".
997    echo "  checking default package list:  "
998    if test "x${PDEFAULT}" = x ; then
999        for i in "." $MODS ; do
1000            if test -r $i"/packages.conf" ; then
1001                    PDEFAULT=$i"/packages.conf"
1002                    break
1003            fi
1004        done
1005    fi
1006  if test "x${PDEFAULT}" = x ; then  if test "x${PDEFAULT}" = x ; then
1007      PDEFAULT="$ROOTDIR/pkg/pkg_default"      PDEFAULT="$ROOTDIR/pkg/pkg_default"
1008  fi  fi
1009  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PDEFAULT}" = xNONE ; then
1010      echo "default packages file disabled"      echo "    default packages file disabled"
1011  else  else
1012      if test ! -r $PDEFAULT ; then      if test ! -r $PDEFAULT ; then
         echo ""  
1013          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""
1014      else      else
1015          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PDEFAULT=\"$PDEFAULT\""
1016          #  Strip the comments and add all the names          #  Strip the comments and add all the names
1017          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
1018          RETVAL=$?          RETVAL=$?
1019          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
1020              echo -n "Error: can't parse default package list "              echo -n "Error: can't parse default package list "
# Line 620  else Line 1024  else
1024          for i in $def ; do          for i in $def ; do
1025              PACKAGES="$PACKAGES $i"              PACKAGES="$PACKAGES $i"
1026          done          done
1027          echo "    packages are:  $PACKAGES"          echo "    before group expansion packages are: $PACKAGES"
1028            expand_pkg_groups
1029            echo "    after group expansion packages are:  $PACKAGES"
1030      fi      fi
1031  fi  fi
1032    
# Line 639  for p in $PACKAGES ; do Line 1045  for p in $PACKAGES ; do
1045  done  done
1046  PACKAGES="$pack"  PACKAGES="$pack"
1047  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
1048  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
1049  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
1050  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1051      if test ! -d "$ROOTDIR/pkg/$i" ; then      if test ! -d "$ROOTDIR/pkg/$i" ; then
# Line 730  for i in $PACKAGES ; do Line 1136  for i in $PACKAGES ; do
1136      if test -d $adr ; then      if test -d $adr ; then
1137          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
1138          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
1139            if test "x$i" = xautodiff ; then
1140                AUTODIFF_PKG_USED=t
1141            fi
1142      else      else
1143          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
1144          exit 1          exit 1
1145      fi      fi
1146  done  done
1147    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths="$SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
1148    
1149  C  Packages disabled by genmake:  # Create a list of #define and #undef to enable/disable packages
1150  EOF  PACKAGES_DOT_H=PACKAGES_CONFIG.h
1151  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
1152  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
1153  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
1154  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
1155  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
1156  all_pack=  all_pack=
1157    DISABLED_PACKAGES=
1158  for n in $names ; do  for n in $names ; do
1159      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
1160          has_pack="f"          has_pack="f"
# Line 807  for n in $names ; do Line 1165  for n in $names ; do
1165              fi              fi
1166          done          done
1167          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
1168              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`
1169              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
1170          fi          fi
1171      fi      fi
1172  done  done
1173  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
1174  for i in $PACKAGES ; do  for i in $PACKAGES ; do
1175      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`
1176      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
1177    #eh3 DEFINES="$DEFINES -D$def"
1178    
1179  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1180      case $i in      case $i in
1181          aim_v23)          aim_v23)
1182              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
1183                echo "Warning: ALLOW_AIM is set to enable aim_v23."
1184              ;;              ;;
1185      esac      esac
1186  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
1187    
1188  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
1189    
1190  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS"
1191  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
1192  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1193  for d in $STANDARDDIRS ; do      STANDARDDIRS="eesupp model"
1194      adr="$ROOTDIR/$d/src"  fi
1195      if test ! -d $adr ; then  if test "x$STANDARDDIRS" != x ; then
1196          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""      for d in $STANDARDDIRS ; do
1197          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/src"
1198          exit 1          if test ! -d $adr ; then
1199      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1200          SOURCEDIRS="$SOURCEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1201      fi              exit 1
1202      adr="$ROOTDIR/$d/inc"          else
1203      if test ! -d $adr ; then              SOURCEDIRS="$SOURCEDIRS $adr"
1204          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          fi
1205          echo "  is correct and that you correctly specified the STANDARDDIRS option"          adr="$ROOTDIR/$d/inc"
1206          exit 1          if test ! -d $adr ; then
1207      else              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
1208          INCLUDEDIRS="$INCLUDEDIRS $adr"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
1209                exit 1
1210            else
1211                INCLUDEDIRS="$INCLUDEDIRS $adr"
1212            fi
1213        done
1214    fi
1215    
1216    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
1217    echo "    of \"#define \"-type statements that are no longer allowed:"
1218    CPP_OPTIONS=
1219    CPP_EEOPTIONS=
1220    spaths=". $INCLUDEDIRS"
1221    names=`ls -1 "$ROOTDIR/pkg"`
1222    for i in $spaths ; do
1223        try="$i/CPP_OPTIONS.h"
1224        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
1225            echo "    found CPP_OPTIONS=\"$try\""
1226            CPP_OPTIONS="$try"
1227            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
1228            for n in $names ; do
1229                test_for_package_in_cpp_options $CPP_OPTIONS $n
1230            done
1231        fi
1232        try="$i/CPP_EEOPTIONS.h"
1233        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
1234            echo "    found CPP_EEOPTIONS=\"$try\""
1235            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
1236    #**** not yet enabled ****
1237    #        test_for_mpi_in_cpp_eeoptions $try
1238    #**** not yet enabled ****
1239            CPP_EEOPTIONS="$try"
1240      fi      fi
1241  done  done
1242    if test "x$CPP_OPTIONS" = x ; then
1243        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
1244        exit 1
1245    fi
1246    
1247    #  Here, we build the list of files to be "run through" the adjoint
1248    #  compiler.
1249    if test -f ./ad_files ; then
1250        rm -f ./ad_files
1251    fi
1252    echo "  Creating the list of files for the adjoint compiler."
1253    for i in $SOURCEDIRS ; do
1254        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
1255        for j in $list_files ; do
1256            cat $i/$j >> ad_files
1257        done
1258    done
1259    
1260  echo  echo
1261  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
1262  echo "  setting INCLUDES"  echo "  setting INCLUDES"
1263  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
1264      if test -d $i ; then      if ! test -d $i ; then
1265          INCLUDES="$INCLUDES -I$i"  #       INCLUDES="$INCLUDES -I$i"
1266      else  #   else
1267          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
1268      fi      fi
1269  done  done
# Line 892  echo -n 'SRCFILES = '    > srclist.inc Line 1277  echo -n 'SRCFILES = '    > srclist.inc
1277  echo -n 'CSRCFILES = '   > csrclist.inc  echo -n 'CSRCFILES = '   > csrclist.inc
1278  echo -n 'F90SRCFILES = ' > f90srclist.inc  echo -n 'F90SRCFILES = ' > f90srclist.inc
1279  echo -n 'HEADERFILES = ' > hlist.inc  echo -n 'HEADERFILES = ' > hlist.inc
1280  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc
1281    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
1282  for d in $alldirs ; do  for d in $alldirs ; do
1283      deplist=      deplist=
1284      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
1285      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
1286      for sf in $sfiles ; do      for sf in $sfiles ; do
1287          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
1288              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
1289                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  case $d/$sf in
1290                  touch .links.tmp/$sf                    ./$PACKAGES_DOT_H)
1291                  deplist="$deplist $sf"                          ;;
1292                      ./AD_CONFIG.h)
1293                            ;;
1294                      ./FC_NAMEMANGLE.h)
1295                            ;;
1296                      *)
1297                            touch .links.tmp/$sf
1298                            deplist="$deplist $sf"
1299                            ;;
1300                    esac
1301                    extn=`echo $sf | $AWK -F '.' '{print $NF}'`
1302                  case $extn in                  case $extn in
1303                      F)                      F)
1304                          echo    " \\"  >> srclist.inc                          echo    " \\"  >> srclist.inc
# Line 920  for d in $alldirs ; do Line 1316  for d in $alldirs ; do
1316                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hlist.inc
1317                          echo -n " $sf" >> hlist.inc                          echo -n " $sf" >> hlist.inc
1318                          ;;                          ;;
1319                        flow)
1320                            echo    " \\"  >> ad_flow_files.inc
1321                            echo -n " $sf" >> ad_flow_files.inc
1322                            ;;
1323                  esac                  esac
1324              fi              fi
1325          fi          fi
# Line 936  echo "" >> srclist.inc Line 1336  echo "" >> srclist.inc
1336  echo "" >> csrclist.inc  echo "" >> csrclist.inc
1337  echo "" >> f90srclist.inc  echo "" >> f90srclist.inc
1338  echo "" >> hlist.inc  echo "" >> hlist.inc
1339    echo "" >> ad_flow_files.inc
1340    
1341  if test -e $MAKEFILE ; then  if test -e $MAKEFILE ; then
1342      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.bak"
# Line 949  echo "# by the command:" >> $MAKEFILE Line 1350  echo "# by the command:" >> $MAKEFILE
1350  echo "#    $0 $@" >> $MAKEFILE  echo "#    $0 $@" >> $MAKEFILE
1351  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
1352  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE
1353    
1354    EXE_AD=$EXECUTABLE"_ad"
1355    EXE_FTL=$EXECUTABLE"_ftl"
1356    EXE_SVD=$EXECUTABLE"_svd"
1357    
1358  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1359    #
1360    # OPTFILE="$OPTFILE"
1361  #  #
1362  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
1363  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
# Line 977  EXEDIR      = ${EXEDIR} Line 1385  EXEDIR      = ${EXEDIR}
1385  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
1386  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
1387    
1388    #eh3  new defines for the adjoint work
1389    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
1390    EXE_AD      = ${EXE_AD}
1391    EXE_FTL     = ${EXE_FTL}
1392    EXE_SVD     = ${EXE_SVD}
1393    
1394    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
1395    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
1396    
1397    # These files are created by Makefile
1398    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h
1399    
1400  EOF  EOF
1401    
1402  #  Note: figure out some way to add Hyades JAM libraries here  #  Note: figure out some way to add Hyades JAM libraries here
# Line 1022  MAKEFILE=${MAKEFILE} Line 1442  MAKEFILE=${MAKEFILE}
1442    
1443  EOF  EOF
1444    
1445  cat srclist.inc    >> $MAKEFILE  cat srclist.inc       >> $MAKEFILE
1446  cat csrclist.inc   >> $MAKEFILE  cat csrclist.inc      >> $MAKEFILE
1447  cat f90srclist.inc >> $MAKEFILE  cat f90srclist.inc    >> $MAKEFILE
1448  cat hlist.inc      >> $MAKEFILE  cat hlist.inc         >> $MAKEFILE
1449    cat ad_flow_files.inc >> $MAKEFILE
1450    echo               >> $MAKEFILE
1451  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE
1452  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE
1453  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE
1454    
1455  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc
1456    rm -f ad_flow_files.inc
1457    
1458  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
1459    
# Line 1038  cat >>$MAKEFILE <<EOF Line 1461  cat >>$MAKEFILE <<EOF
1461  .SUFFIXES: .o .f .p .F .c .F90 .f90  .SUFFIXES: .o .f .p .F .c .F90 .f90
1462    
1463  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
1464  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)
1465            @echo Creating \$@ ...
1466          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
1467  depend:  depend:
1468          @make links          @make links
1469          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)
1470          ../../../tools/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
1471    
1472  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)
1473    
1474  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77FILES) \$(F90FILES)
1475    
# Line 1054  output.txt: \$(EXECUTABLE) Line 1478  output.txt: \$(EXECUTABLE)
1478          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
1479    
1480  clean:  clean:
1481          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl} *.template
1482  Clean:  Clean:
1483          @make clean          @make clean
1484          @make cleanlinks          @make cleanlinks
1485          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES)
1486            -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak
1487  CLEAN:  CLEAN:
1488          @make Clean          @make Clean
1489          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
1490          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
1491          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
1492          -rm -f \$(EXECUTABLE)          -rm -f \$(EXECUTABLE) output.txt
1493    
1494    #eh3 Makefile: makefile
1495  makefile:  makefile:
1496          ${0} $@          $THIS_SCRIPT $@
1497  cleanlinks:  cleanlinks:
1498          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
1499    
1500    # Special targets ($SPECIAL_FILES) which are create by make
1501    ${PACKAGES_DOT_H}:
1502            @echo Creating \$@ ...
1503            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
1504    AD_CONFIG.h:
1505            @echo Creating \$@ ...
1506            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
1507    FC_NAMEMANGLE.h:
1508            @echo Creating \$@ ...
1509            echo "$FC_NAMEMANGLE" > \$@
1510    
1511  # The normal chain of rules is (  .F - .f - .o  )  # The normal chain of rules is (  .F - .f - .o  )
1512  .F.f:  .F.f:
1513          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
# Line 1089  cleanlinks: Line 1526  cleanlinks:
1526  .p.f:  .p.f:
1527          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
1528    
1529    #=========================================
1530    #===  Automatic Differentiation Rules  ===
1531    
1532    TAMC           = ${TAMC}
1533    TAF            = ${TAF}
1534    
1535    TAF_EXTRA      = ${TAF_EXTRA}
1536    TAMC_EXTRA     = ${TAMC_EXTRA}
1537    
1538    EOF
1539    
1540    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
1541    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
1542    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1543    for i in $ad_vars ; do
1544        name=$i
1545        t1="t2=\$"`echo $i`
1546        eval $t1
1547        printf "%-20s = " $name >> $MAKEFILE
1548        echo $t2 >> $MAKEFILE
1549    done
1550    
1551    echo "  Add the source list for AD code generation"
1552    echo >> $MAKEFILE
1553    echo -n "AD_FILES = " >> $MAKEFILE
1554    AD_FILES=`cat ad_files`
1555    for i in $AD_FILES ; do
1556        echo    " \\" >> $MAKEFILE
1557        echo -n " $i" >> $MAKEFILE
1558    done
1559    echo >> $MAKEFILE
1560    rm -f ad_files
1561    
1562    cat >>$MAKEFILE <<EOF
1563    
1564    # ... AD ...
1565    adall: ad_taf
1566    adtaf: ad_taf_output.f
1567    adtamc: ad_tamc_output.f
1568    
1569    ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1570            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
1571            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
1572            -rm -f ad_config.template
1573            @make \$(F77FILES)
1574            @make \$(AD_FLOW_FILES)
1575            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f
1576    
1577    ad_taf_output.f: ad_input_code.f
1578            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1579            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1580    
1581    adtafonly:
1582            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f
1583            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.f
1584    
1585    ad_taf: ad_taf_output.o \$(OBJFILES)
1586            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
1587    
1588    ad_tamc_output.f: ad_input_code.f
1589            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f
1590            cat ad_input_code_ad.f | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.f
1591    
1592    ad_tamc: ad_tamc_output.o \$(OBJFILES)
1593            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
1594    
1595    
1596    # ... FTL ...
1597    ftlall: ftl_taf
1598    ftltaf: ftl_taf_output.f
1599    ftltamc: ftl_tamc_output.f
1600    
1601    ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)
1602            @\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
1603            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
1604            -rm -f ftl_config.template
1605            @make \$(F77FILES)
1606            @make \$(AD_FLOW_FILES)
1607            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f
1608    
1609    ftl_taf_output.f: ftl_input_code.f
1610            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1611            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1612    
1613    ftltafonly:
1614            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f
1615            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.f
1616    
1617    ftl_taf: ftl_taf_output.o \$(OBJFILES)
1618            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
1619    
1620    ftl_tamc_output.f: ftl_input_code.f
1621            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f
1622            cat ftl_input_code_ftl.f | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.f
1623    
1624    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
1625            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
1626    
1627    
1628    # ... SVD ...
1629    svdtaf: ad_taf_output.f ftl_taf_output.f
1630    svdall: svd_taf
1631    
1632    svd_taf: ad_taf_output.o ftl_taf_output.o \$(OBJFILES)
1633            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
1634    
1635    
1636    #=========================================
1637    
1638  EOF  EOF
1639    
1640    if test "x$EXEHOOK" != x ; then
1641        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
1642    fi
1643    
1644  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
1645  for i in $KPPFILES ; do  for i in $KPPFILES ; do
1646      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 1120  echo "  Adding makedepend marker" Line 1670  echo "  Adding makedepend marker"
1670  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
1671    
1672  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
1673    
1674    # Create special header files
1675    $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
1676    if test ! -f $PACKAGES_DOT_H ; then
1677        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1678    else
1679        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1680        RETVAL=$?
1681        if test "x$RETVAL" = x0 ; then
1682            rm -f $PACKAGES_DOT_H".tmp"
1683        else
1684            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
1685            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
1686        fi
1687    fi
1688    if test ! -f AD_CONFIG.h ; then
1689        $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
1690    fi
1691    
1692    
1693    #  Write the "state" for future records
1694    if test "x$DUMPSTATE" != xf ; then
1695        echo -n "" > genmake_state
1696        for i in $gm_state ; do
1697            t1="t2=\$$i"
1698            eval $t1
1699            echo "$i='$t2'" >> genmake_state
1700        done
1701    fi

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