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revision 1.3 by cnh, Fri Aug 22 20:50:40 2003 UTC revision 1.226 by jmc, Fri Sep 30 20:03:10 2011 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16  # Guess possible config options for this host  Usage: "$0" [OPTIONS]
17  find_possible_configs()  {    where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172      p_PLATFORM=`uname`"-"`uname -m`  # Search for particular CPP #cmds associated with packages
173      echo "The platform appears to be:"  # usage: test_for_package_in_cpp_options CPP_file package_name
174      echo "  "$p_PLATFORM  test_for_package_in_cpp_options() {
175        cpp_options=$1
176      p_LN=      pkg=$2
177      echo "test" > test      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"
178      ln -s ./test link      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"
179        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"
180        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"
181        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"
182        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"
183        test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"
184        test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"
185    }
186    
187    # Search for particular CPP #cmds associated with MPI
188    # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189    test_for_mpi_in_cpp_eeoptions() {
190        cpp_options=$1
191        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"
192        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"
193        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"
194        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"
195        test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"
196        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"
197        test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"
198        test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"
199    }
200    
201    # Search for particular string in a file. Return 1 if detected, 0 if not
202    # usage: test_for_string_in_file file string
203    test_for_string_in_file() {
204        file=$1
205        strng=$2
206        grep -i "$strng" $file > /dev/null 2>&1
207      RETVAL=$?      RETVAL=$?
208      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
209          p_LN="ln -s"          printf "Error: In $file there is an illegal line: "
210            grep -i "$strng" $file
211            exit 99
212        fi
213        return 0
214    }
215    
216    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
217    # the package list.
218    expand_pkg_groups() {
219        new_packages=
220        if test -r $PKG_GROUPS ; then
221            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
222            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
223            matched=0
224            for i in $PACKAGES ; do
225                line=`grep "^ *$i" ./p2.tmp`
226                RETVAL=$?
227                if test "x$RETVAL" = x0 ; then
228                    matched=1
229                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
230                    echo "    replacing \"$i\" with:$replace"
231                    new_packages="$new_packages $replace"
232                else
233                    new_packages="$new_packages $i"
234                fi
235            done
236            PACKAGES=$new_packages
237            rm -f ./p[1,2].tmp
238            return $matched
239        else
240            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
241        fi
242    }
243    
244    #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
245    #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
246    check_for_broken_Ff()  {
247        #  Do we have defaults for $FS and/or $FS90 ?
248        tfs=f
249        tfs9=f90
250        if test "x$FS" != x ; then
251            tfs="$FS"
252        fi
253        if test "x$FS90" != x ; then
254            tfs9="$FS90"
255        fi
256    
257        #  First check the ability to create a *.F/.f pair.
258        cat <<EOF >> genmake_hello.F
259          program hello
260          write(*,*) 'hi'
261          stop
262          end
263    EOF
264        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
265        RETVAL=$?
266        if test "x$RETVAL" != x0 ; then
267            if test "x$FS" = x ; then
268                FS='for'
269                FS90='fr9'
270                check_for_broken_Ff
271            else
272                cat <<EOF 2>&1
273    ERROR: Your file system cannot distinguish between *.F and *.f files
274      (fails the "cp" test) and this program cannot find a suitable
275      replacement extension.  Please try a different build environment or
276      contact the <MITgcm-support@mitgcm.org> list for help.
277    
278    EOF
279                exit -1
280            fi
281            return
282      fi      fi
283      rm -f test link      rm -f genmake_hello.*
284    
285      p_CPP=`which cpp`      #  Check the ability of ${MAKE} and ${LN} to use the current set
286            #  of extensions.
287        cat <<EOF >> genmake_hello.F
288          program hello
289          write(*,*) 'hi'
290          stop
291          end
292    EOF
293        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
294        cat <<EOF >> $MAKEFILE
295    .SUFFIXES:
296    .SUFFIXES: .$tfs .F
297    .F.$tfs:
298            $LN \$< \$@
299    EOF
300        $MAKE "genmake_hello."$tfs > /dev/null 2>&1
301      RETVAL=$?      RETVAL=$?
302      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
303          p_LN="ln -s"          if test "x$FS" = x ; then
304                FS='for'
305                FS90='fr9'
306                check_for_broken_Ff
307            else
308                cat <<EOF 2>&1
309    ERROR: Your file system cannot distinguish between *.F and *.f files
310      (fails the "make/ln" test) and this program cannot find a suitable
311      replacement extension.  Please try a different build environment or
312      contact the <MITgcm-support@mitgcm.org> list for help.
313    
314    EOF
315                exit -1
316                return
317            fi
318      fi      fi
319      rm -f test link      rm -f genmake_hello.* $MAKEFILE
320        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
321    
322      # look for possible fortran compilers      #  If we make it here, use the extensions
323      p_FC=      FS=$tfs
324      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      FS90=$tfs9
325          which $c > /dev/null 2>&1      return
326    }
327    
328    look_for_makedepend()  {
329    
330        #  The "original" makedepend is part of the Imake system that is
331        #  most often distributed with XFree86 or with an XFree86 source
332        #  package.  As a result, many machines (eg. generic Linux) do not
333        #  have a system-default "makedepend" available.  For those
334        #  systems, we have two fall-back options:
335        #
336        #    1) a makedepend implementation shipped with the cyrus-imapd
337        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
338        #
339        #    2) a known-buggy xmakedpend shell script
340        #
341        #  So the choices are, in order:
342        #
343        #    1) use the user-specified program
344        #    2) use a system-wide default
345        #    3) locally build and use the cyrus implementation
346        #    4) fall back to the buggy local xmakedpend script
347        #
348        echo >> $LOGFILE
349        echo "running: look_for_makedepend()" >> $LOGFILE
350        if test "x${MAKEDEPEND}" != x ; then
351            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
352            RETVAL=$?
353            if test x"$RETVAL" = x0 ; then
354                build_cyrus_makedepend
355                RETVAL=$?
356                if test "x$RETVAL" != x0 ; then
357                    echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"
358                    MAKEDEPEND=
359                fi
360            else
361                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
362                RETVAL=$?
363                if test "x$RETVAL" = x0 ; then
364                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
365                fi
366                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
367            fi
368        fi
369        if test "x${MAKEDEPEND}" = x ; then
370            which makedepend > /dev/null 2>&1
371            RV0=$?
372            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
373            #  echo 'MAKEFILE="'$MAKEFILE'"'
374            cat <<EOF >> $MAKEFILE
375    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
376    #
377    #   Some "makedepend" implementations will die if they cannot
378    #   find a Makefile -- so this file is here to gives them an
379    #   empty one to find and parse.
380    EOF
381            cat <<EOF >> genmake_tc.f
382          program test
383          write(*,*) 'test'
384          stop
385          end
386    EOF
387            makedepend genmake_tc.f > /dev/null 2>&1
388            RV1=$?
389            test -f $MAKEFILE  &&  rm -f $MAKEFILE
390            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391            if test "x${RV0}${RV1}" = x00 ; then
392                MAKEDEPEND=makedepend
393                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
394            else
395                echo "    system-default makedepend not found. Try to build cyrus-makedepend"
396                #  Try to build the cyrus implementation
397                build_cyrus_makedepend
398                RETVAL=$?
399                if test "x$RETVAL" != x0 ; then
400                    echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"
401                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
402                    echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
403                fi
404            fi
405        fi
406    }
407    
408    build_cyrus_makedepend()  {
409        echo >> $LOGFILE
410        echo "running: build_cyrus_makedepend()" >> $LOGFILE
411        rm -f ./genmake_cy_md
412        (
413            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
414                &&  ./configure > /dev/null 2>&1  \
415                &&  make > /dev/null 2>&1
416            if test -x ./makedepend.exe ; then
417                $LN ./makedepend.exe ./makedepend
418            fi
419            ./makedepend ifparser.c > /dev/null 2>&1  \
420                &&  echo "true"
421        ) > ./genmake_cy_md
422        grep true ./genmake_cy_md > /dev/null 2>&1
423        RETVAL=$?
424        rm -f ./genmake_cy_md
425        if test "x$RETVAL" = x0 ; then
426            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
427            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
428            return 0
429        else
430            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
431            return 1
432        fi
433    }
434    
435    build_embed_encode()
436    {
437        printf "  building the embed-encode utility...  "
438        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
439            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
440                echo
441                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
442                echo
443                EMBED_SRC=f
444                return 1
445            fi
446            clist="cc gcc c89 $CC"
447            for ic in $clist ; do
448                comm="$ic -o encode_files encode_files.c"
449                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
450                RETVAL=$?
451                if test "x$RETVAL" = x0 ; then
452                    echo "OK"
453                    DEFINES="$DEFINES -DHAVE_EMBED_SRC"
454                    return 0
455                fi
456            done
457            echo
458            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
459            echo "      so it has been disabled"
460            echo
461            EMBED_SRC=f
462            return 1
463        fi
464        echo "OK"
465        DEFINES="$DEFINES -DHAVE_EMBED_SRC"
466    }
467    
468    #  look for possible C compilers
469    look_for_C_compilers() {
470        echo >> $LOGFILE
471        echo "running: look_for_C_compilers()" >> $LOGFILE
472        rm -f ./genmake_hello.c  ./genmake_hello
473        cat >> genmake_hello.c << EOF
474    #include <stdio.h>
475    int main(int argc, char **argv) {
476      printf("Hello!\n");
477      return 0;
478    }
479    EOF
480        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
481        p_CC=
482        for c in $tmp ; do
483            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
484            echo $COMM >> $LOGFILE
485            $COMM >> $LOGFILE 2>&1
486          RETVAL=$?          RETVAL=$?
487          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
488              p_FC="$p_FC $c"              echo " $c test successful" >> $LOGFILE
489                p_CC="$p_CC $c"
490          fi          fi
491      done      done
492      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./genmake_hello.c ./genmake_hello
493      if test "x${p_FC}" = x ; then      if test "x${p_CC}" = x ; then
494          echo "  None found!!!"          cat 1>&2 <<EOF
495    
496    Error: No C compilers were found in your path.  Please specify one using:
497    
498        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
499        2) the CC or MITGCM_CC environment variables.
500    
501    EOF
502            exit 1
503      else      else
504          echo "  "$p_FC          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
505            if test "x$CC" = x ; then
506                CC=`echo $p_CC | $AWK '{print $1}'`
507                echo "  Setting C compiler to: "$CC
508            fi
509      fi      fi
510        echo " --> set CC='$CC'" >> $LOGFILE
511    }
512    
513      # look for possible MPI libraries  # Guess possible config options for this host
514      mpi_libs=  find_possible_optfile()  {
515      mpi_fort=`which mpif77 2>/dev/null`  
516      RETVAL=$?      echo >> $LOGFILE
517      if test "x${RETVAL}" = x0 ; then      echo "running: find_possible_optfile()" >> $LOGFILE
518          cat >>test.f <<EOF      tmp1=`uname`"_"`uname -m`
519        PROGRAM HELLO      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
520        DO 10, I=1,10      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
521        PRINT *,'Hello World'      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
522     10 CONTINUE      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
523        STOP      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
524        END      PLATFORM=$tmp3
525        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
526        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
527        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
528    
529        #================================================================
530        #  look for possible FORTRAN compilers
531        echo "  look for possible FORTRAN compilers" >> $LOGFILE
532        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
533        p_FC=
534        rm -f ./genmake_hello.f
535        cat >> genmake_hello.f <<EOF
536          program hello
537          do i=1,3
538            print *, 'hello world : ', i
539          enddo
540          end
541  EOF  EOF
542          eval "$mpi_fort -showme test.f > out"      for f in $tmp ; do
543            COMM="$f -o genmake_hello genmake_hello.f"
544            echo $COMM >> $LOGFILE
545            $COMM >> $LOGFILE 2>&1
546          RETVAL=$?          RETVAL=$?
547          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
548              a=`cat out`              echo " $f test successful" >> $LOGFILE
549              for i in $a ; do              p_FC="$p_FC $f"
                 case $i in  
                     -*)  
                         mpi_libs="$mpi_libs $i" ;;  
                 esac  
             done  
             echo "The MPI libs appear to be:"  
             echo "  "$mpi_libs  
550          fi          fi
551          rm -f test.f out      done
552        rm -f ./genmake_hello.f ./genmake_hello
553        if test "x${p_FC}" = x ; then
554            cat 1>&2 <<EOF
555    
556    Error: No Fortran compilers were found in your path.  Please specify one using:
557    
558        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
559        2) a command-line option (eg. "-fc NAME"), or
560        3) the FC or MITGCM_FC environment variables.
561    
562    EOF
563            exit 1
564        else
565            echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
566      fi      fi
567    
568  }      #  Use the first of the compilers found in the current PATH
569        #  that has a correctly-named optfile
570        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
571            for i in $p_FC ; do
572                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
573                if test -r $OPTFILE ; then
574                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
575                    break
576                fi
577            done
578        fi
579    
580  parse_options()  {      if test "x$OPTFILE" = x ; then
581            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
582      ac_prev=          if test ! -r $OPTFILE ; then
583      for ac_option in "${OPTIONS[@]}" ; do               echo "  I looked for the file "$OPTFILE" but did not find it"
584            fi
585          # echo "ac_option = :$ac_option:"      fi
586            
587          # If the previous option needs an argument, assign it.      if test "x$OPTFILE" = x ; then
588          if test -n "$ac_prev"; then          cat 1>&2 <<EOF
589              eval "$ac_prev=\$ac_option"  
590              ac_prev=  Error: No options file was found in:  $ROOTDIR/tools/build_options/
591              continue    that matches this platform ("$PLATFORM") and the compilers found in
592          fi    your path.  Please specify an "optfile" using:
593            
594          ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      1) the command line (eg. "-optfile=path/to/OPTFILE"), or
595                2) the MITGCM_OF environment variable.
596          case $ac_option in  
597                  If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
598              -help | --help | -h | --h)  
599                  usage ;;  EOF
600                        exit 1
601              -nooptfile | --nooptfile)      fi
602                  OPTFILE="NONE" ;;  
603              -optfile | --optfile | -of | --of)  #     # look for possible MPI libraries
604                  ac_prev=optfile ;;  #     mpi_libs=
605              -optfile=* | --optfile=* | -of=* | --of=*)  #     mpi_fort=`which mpif77 2>/dev/null`
606                  OPTFILE=$ac_optarg ;;  #     RETVAL=$?
607                #     if test "x${RETVAL}" = x0 ; then
608              -pdepend | --pdepend)  #       cat >>test.f <<EOF
609                  ac_prev=pdepend ;;  #       PROGRAM HELLO
610              -pdepend=* | --pdepend=*)  #       DO 10, I=1,10
611                  PDEPEND=$ac_optarg ;;  #       PRINT *,'Hello World'
612                #    10 CONTINUE
613              -pdefault | --pdefault)  #       STOP
614                  ac_prev=pdefault ;;  #       END
615              -pdefault=* | --pdefault=*)  # EOF
616                  PDEFAULT=$ac_optarg ;;  #       eval "$mpi_fort -showme test.f > out"
617                #       RETVAL=$?
618              -makefile | -ma)  #       if test "x${RETVAL}" = x0 ; then
619                  ac_prev=makefile ;;  #           a=`cat out`
620              --makefile=* | -ma=*)  #           for i in $a ; do
621                  MAKEFILE=$ac_optarg ;;  #               case $i in
622                #                   -*)
623              -platform | --platform | -pl | --pl)  #                       mpi_libs="$mpi_libs $i" ;;
624                  ac_prev=platform ;;  #               esac
625              -platform=* | --platform=* | -pl=* | --pl=*)  #           done
626                  PLATFORM=$ac_optarg ;;  #           echo "The MPI libs appear to be:"
627    #           echo "  "$mpi_libs
628              -rootdir | --rootdir | -rd | --rd)  #       fi
629                  ac_prev=rootdir ;;  #       rm -f test.f out
630              -rootdir=* | --rootdir=* | -rd=* | --rd=*)  #     fi
                 ROOTDIR=$ac_optarg ;;  
               
             -mods | --mods | -mo | --mo)  
                 ac_prev=mods ;;  
             -mods=* | --mods=* | -mo=* | --mo=*)  
                 MODS=$ac_optarg ;;  
               
             -disable | --disable)  
                 ac_prev=disable ;;  
             -disable=* | --disable=*)  
                 DISABLE=$ac_optarg ;;  
               
             -enable | --enable)  
                 ac_prev=enable ;;  
             -enable=* | --enable=*)  
                 ENABLE=$ac_optarg ;;  
               
             -noopt | --noopt)  
                 ac_prev=noopt ;;  
             -noopt=* | --noopt=*)  
                 NOOPT=$ac_optarg ;;  
               
 #           -cpp | --cpp)  
 #               ac_prev=cpp ;;  
 #           -cpp=* | --cpp=*)  
 #               CPP=$ac_optarg ;;  
               
             -fortran | --fortran | -fc | --fc)  
                 ac_prev=fc ;;  
             -fc=* | --fc=*)  
                 FC=$ac_optarg ;;  
               
             -ieee | --ieee)  
                 IEEE=1 ;;  
             -noieee | --noieee)  
                 IEEE=0 ;;  
               
             -mpi | --mpi)  
                 MPI=1 ;;  
             -nompi | --nompi)  
                 MPI=0 ;;  
               
             -jam | --jam)  
                 JAM=1 ;;  
             -nojam | --nojam)  
                 JAM=0 ;;  
               
             -*)  
                 echo "Error: unrecognized option: "$ac_option  
                 usage  
                 ;;  
               
             *)  
                 echo "Error: unrecognized argument: "$ac_option  
                 usage  
                 ;;  
               
         esac  
           
     done  
631  }  }
632    
633  #  Parse the package dependency information  #  Parse the package dependency information
# Line 199  get_pdepend_list()  { Line 636  get_pdepend_list()  {
636      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
637      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
638      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
639          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
640          > ./.pd_tmp          > ./.pd_tmp
641      source ./.pd_tmp      RETVAL=$?
642        if test ! "x${RETVAL}" = x0 ; then
643          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
644          exit 1
645        fi
646        . ./.pd_tmp
647      rm -f ./.pd_tmp      rm -f ./.pd_tmp
648    }
649    
650    #  Build a CPP macro to automate calling C routines from FORTRAN
651    get_fortran_c_namemangling()  {
652    
653        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
654        if test ! "x$FC_NAMEMANGLE" = x ; then
655            return 0
656        fi
657        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
658    
659        default_nm="#define FC_NAMEMANGLE(X) X ## _"
660    
661        cat > genmake_test.c <<EOF
662    void tcall( char * string ) { tsub( string ); }
663    EOF
664        COMM="$CC $CFLAGS -c genmake_test.c"
665        echo ' '$COMM >> $LOGFILE
666        $COMM >> $LOGFILE 2>&1
667        RETVAL=$?
668        if test "x$RETVAL" != x0 ; then
669            FC_NAMEMANGLE=$default_nm
670            cat <<EOF>> $LOGFILE
671    
672     WARNING: C test compile fails
673     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
674     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
675    EOF
676            return 1
677        fi
678        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
679        RETVAL=$?
680        if test "x$RETVAL" != x0 ; then
681            FC_NAMEMANGLE=$default_nm
682            cat <<EOF>> $LOGFILE
683    
684     WARNING: The "nm" command failed.
685     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
686     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
687    EOF
688            return 1
689        fi
690        cat > genmake_tcomp.$FS <<EOF
691          subroutine tcall( string )
692          character*(*) string
693          call tsub( string )
694          end
695    EOF
696        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
697        echo ' '$COMM >> $LOGFILE
698        $COMM >> $LOGFILE 2>&1
699        RETVAL=$?
700        if test "x$RETVAL" != x0 ; then
701            FC_NAMEMANGLE=$default_nm
702            cat <<EOF>> $LOGFILE
703    
704     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
705     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
706     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
707    EOF
708            return 1
709        fi
710        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
711        RETVAL=$?
712        if test "x$RETVAL" != x0 ; then
713            FC_NAMEMANGLE=$default_nm
714            cat <<EOF>> $LOGFILE
715    
716     WARNING: The "nm" command failed.
717     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
718     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
719    EOF
720            return 1
721        fi
722    
723      echo -n "PNAME = "${}      c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
724        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
725        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
726        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
727    
728        nmangle="X"
729        if test "x$c_a" != "x$f_a" ; then
730            comm="echo x$f_a | sed -e 's|x$c_a||'"
731            a=`eval $comm`
732            nmangle="$a ## $nmangle"
733        fi
734        if test "x$c_b" != "x$f_b" ; then
735            comm="echo x$f_b | sed -e 's|x$c_b||'"
736            b=`eval $comm`
737            nmangle="$nmangle ## $b"
738        fi
739    
740        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
741    
742        #  cleanup the testing files
743        rm -f genmake_tcomp.* genmake_test.*
744    
745        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
746  }  }
747    
748    check_HAVE_CLOC()  {
749        echo >> $LOGFILE
750        echo "running: check_HAVE_CLOC()" >> $LOGFILE
751        get_fortran_c_namemangling
752        cat <<EOF > genmake_tc_1.c
753    $FC_NAMEMANGLE
754    #include <stdio.h>
755    #include <stdlib.h>
756    #include <unistd.h>
757    #include <assert.h>
758    #include <sys/time.h>
759    void FC_NAMEMANGLE(cloc) ( double *curtim )
760    {
761     struct timeval tv1;
762     gettimeofday(&tv1 , (void *)NULL );
763     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
764     *curtim = *curtim/1.E6;
765    }
766    EOF
767        COMM="$CC $CFLAGS -c genmake_tc_1.c"
768        echo $COMM >> $LOGFILE
769        $COMM >> $LOGFILE 2>&1
770        RET_C=$?
771        cat <<EOF > genmake_tc_2.$FS
772          program hello
773          REAL*8 wtime
774          external cloc
775          call cloc(wtime)
776          print *," HELLO WORLD", wtime
777          end
778    EOF
779        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
780        echo $COMM >> $LOGFILE
781        $COMM >> $LOGFILE 2>&1
782        RET_F=$?
783        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
784        RETVAL=$?
785        if test "x$RETVAL" = x0 ; then
786            HAVE_CLOC=t
787            DEFINES="$DEFINES -DHAVE_CLOC"
788        fi
789        rm -f genmake_tc*
790        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
791    }
792    
793  #  Explain usage  check_HAVE_SIGREG()  {
794  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
795      echo          return
796      echo "Usage: "$0" [OPTIONS]"      fi
797      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
798      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
799      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
800      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
801      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
802      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
803      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
804      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
805      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
806      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
807      echo "    -makefile NAME | -ma NAME"  
808      echo "      --makefile=NAME | -ma=NAME"  int * ip;
809      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"  
810      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  static void killhandler(
811      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
812      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"  {
813      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"      *ip = *ip + 1;
814      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"      return;
     echo "    -disable NAME | --disable NAME"  
     echo "      -disable=NAME | --disable=NAME"  
     echo "    -enable NAME | --enable NAME"  
     echo "      -enable=NAME | --enable=NAME"  
     echo "    -noopt NAME | --noopt NAME"  
     echo "      -noopt=NAME | --noopt=NAME"  
 #    echo "    -cpp NAME | --cpp NAME"  
 #    echo "      -cpp=NAME | --cpp=NAME"  
     echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"  
     echo "      -fc=NAME | --fc=NAME"  
     echo "    -[no]ieee | --[no]ieee"  
     echo "    -[no]mpi | --[no]mpi"  
     echo "    -[no]jam | --[no]jam"  
     echo  
     echo "  and NAME is a string such as:"  
     echo  
     echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"  
     echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"  
     echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"  
     echo  
     echo "  which, depending upon your shell, may need to be single-quoted"  
     echo "  if it contains spaces, dashes, or other special characters."  
     exit 1  
815  }  }
816    
817  # Dump all important state  void FC_NAMEMANGLE(sigreg) (int * aip)
818  dump_state()  {  {
819      fname=$1      struct sigaction s;
820      echo " " > $fname      ip = aip;
821        s.sa_flags = SA_SIGINFO;
822        s.sa_sigaction = (void *)killhandler;
823        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
824            printf("Sigaction returned error = %d\n", errno);
825            exit(0);
826        }
827        return;
828    }
829    EOF
830        COMM="$CC $CFLAGS -c genmake_tc_1.c"
831        echo $COMM >> $LOGFILE
832        $COMM >> $LOGFILE 2>&1
833        RET_C=$?
834        cat <<EOF > genmake_tc_2.$FS
835          program hello
836          integer anint
837          common /iv/ anint
838          external sigreg
839          call sigreg(anint)
840          end
841    EOF
842        cat genmake_tc_2.$FS >> $LOGFILE
843        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
844        echo $COMM >> $LOGFILE
845        $COMM >> $LOGFILE 2>&1
846      RETVAL=$?      RETVAL=$?
847      if test "x${RETVAL}" = x ; then      if test "x$RETVAL" = x0 ; then
848          echo "Error: cannot write to $fname"          HAVE_SIGREG=t
849          exit 1          DEFINES="$DEFINES -DHAVE_SIGREG"
850        fi
851        rm -f genmake_tc*
852        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
853    }
854    
855    check_HAVE_SETRLSTK()  {
856        if test "x$HAVE_SETRLSTK" = xt ; then
857            DEFINES="$DEFINES -DHAVE_SETRLSTK"
858            return
859        fi  
860        if test ! "x$HAVE_SETRLSTK" = x ; then
861            return
862        fi
863        echo >> $LOGFILE
864        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
865        get_fortran_c_namemangling
866        cat <<EOF > genmake_tc_1.c
867    $FC_NAMEMANGLE
868    #include <sys/time.h>
869    #include <sys/resource.h>
870    #include <unistd.h>
871    void FC_NAMEMANGLE(setrlstk) ()
872    {
873        struct rlimit rls;
874        rls.rlim_cur = RLIM_INFINITY;
875        rls.rlim_max = RLIM_INFINITY;
876        setrlimit(RLIMIT_STACK, &rls);
877        return;
878    }
879    EOF
880        COMM="$CC $CFLAGS -c genmake_tc_1.c"
881        echo $COMM >> $LOGFILE
882        $COMM >> $LOGFILE 2>&1
883        RET_C=$?
884        cat <<EOF > genmake_tc_2.$FS
885          program hello
886          external setrlstk
887          call setrlstk()
888          end
889    EOF
890        cat genmake_tc_2.$FS >> $LOGFILE
891        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
892        echo $COMM >> $LOGFILE
893        $COMM >> $LOGFILE 2>&1
894        RETVAL=$?
895        if test "x$RETVAL" = x0 ; then
896            HAVE_SETRLSTK=t
897            DEFINES="$DEFINES -DHAVE_SETRLSTK"
898        fi
899        rm -f genmake_tc*
900        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
901    }
902    
903    check_HAVE_STAT()  {
904        echo >> $LOGFILE
905        echo "running: check_HAVE_STAT()" >> $LOGFILE
906        get_fortran_c_namemangling
907        cat <<EOF > genmake_tc_1.c
908    $FC_NAMEMANGLE
909    #include <stdio.h>
910    #include <stdlib.h>
911    #include <unistd.h>
912    #include <sys/stat.h>
913    #include <sys/types.h>
914    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
915    {
916        char name[512];
917        struct stat astat;
918    
919        name[0] = 'a'; name[1] = '\0';
920        if (! stat(name, &astat))
921            *nbyte = (int)(astat.st_size);
922        else
923            *nbyte = -1;
924    }
925    EOF
926        COMM="$CC $CFLAGS -c genmake_tc_1.c"
927        echo $COMM >> $LOGFILE
928        $COMM >> genmake_tc.log 2>&1
929        RET_C=$?
930        cat <<EOF > genmake_tc_2.$FS
931          program hello
932          integer nbyte
933          call tfsize(nbyte)
934          print *," HELLO WORLD", nbyte
935          end
936    EOF
937        cat genmake_tc_2.$FS >> $LOGFILE
938        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
939        echo $COMM >> $LOGFILE
940        $COMM >> genmake_tc.log 2>&1
941        RETVAL=$?
942        if test "x$RETVAL" = x0 ; then
943            HAVE_STAT=t
944            DEFINES="$DEFINES -DHAVE_STAT"
945        fi
946        rm -f genmake_tc*
947        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
948    }
949    
950    check_netcdf_libs()  {
951        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
952            return
953        fi
954        echo >> $LOGFILE
955        echo "running: check_netcdf_libs()" >> $LOGFILE
956        cat <<EOF > genmake_tnc.F
957          program fgennc
958    #include "netcdf.inc"
959    EOF
960        if test ! "x$MPI" = x ; then
961            echo '#include "mpif.h"' >> genmake_tnc.F
962        fi
963        cat <<EOF >> genmake_tnc.F
964          integer iret, ncid, xid
965          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
966          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
967          iret = nf_def_dim(ncid, 'X', 11, xid)
968          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
969          iret = nf_close(ncid)
970          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
971          end
972    EOF
973        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
974        cat genmake_tnc.F >> genmake_tnc.log
975        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
976        RET_CPP=f
977        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
978        echo "$COMM" >> genmake_tnc.log
979        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
980        if test "x$RET_CPP" = xf ; then
981            echo "  WARNING: CPP failed to pre-process the netcdf test." \
982                >> genmake_tnc.log
983            echo "    Please check that \$INCLUDES is properly set." \
984                >> genmake_tnc.log
985        fi
986        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
987        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
988        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
989            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
990        RET_COMPILE=$?
991        cat genmake_tnc.log >> $LOGFILE
992    
993        #EH3  Remove test program execution for machines that either disallow
994        #EH3  execution or cannot support it (eg. cross-compilers)
995        #EH3
996        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
997        #EH3 RETVAL=$?
998        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
999    
1000        if test "x$RET_COMPILE" = x0 ; then
1001            HAVE_NETCDF=t
1002            echo "check_netcdf: successful" >> $LOGFILE
1003        else
1004            # try again with "-lnetcdf" added to the libs
1005            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1006            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1007            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1008            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1009            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1010                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1011                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1012            RET_COMPILE=$?
1013            echo >> $LOGFILE
1014            cat genmake_tnc.log >> $LOGFILE
1015            if test "x$RET_COMPILE" = x0 ; then
1016                LIBS="$LIBS -lnetcdf"
1017                HAVE_NETCDF=t
1018                echo "check_netcdf: successful" >> $LOGFILE
1019            else
1020            # try again with "-lnetcdff" added to the libs
1021                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1022                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1023                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1024                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1025                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1026                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1027                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1028                RET_COMPILE=$?
1029                echo >> $LOGFILE
1030                cat genmake_tnc.log >> $LOGFILE
1031                if test "x$RET_COMPILE" = x0 ; then
1032                    LIBS="$LIBS -lnetcdff -lnetcdf"
1033                    HAVE_NETCDF=t
1034                    echo "check_netcdf: successful" >> $LOGFILE
1035                fi
1036            fi
1037      fi      fi
1038      echo "makefile "$makefile > $fname      rm -f genmake_tnc*
1039        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1040  }  }
1041    
1042    
1043  #eh3 # This is the generic configuration.  ###############################################################################
1044  #eh3 set LN         = ( 'ln -s' )  #   Sequential part of script starts here
1045  #eh3 set CPP        = ( '/lib/cpp -P' )  ###############################################################################
 #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  
 #eh3 set KPP        = (  )  
 #eh3 set FC         = ( 'f77' )  
 #eh3 set LINK       = $FC  
 #eh3 set MAKEDEPEND = ( 'makedepend' )  
 #eh3 set INCLUDES   = ( -I. )  
 #eh3 set FFLAGS     = (  )  
 #eh3 set FOPTIM     = (  )  
 #eh3 set CFLAGS     = (  )  
 #eh3 set KFLAGS1    = (  )  
 #eh3 set KFLAGS2    = (  )  
 #eh3 set LIBS       = (  )  
 #eh3 set KPPFILES   = (  )  
 #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  
 #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )  
1046    
1047  #  Set defaults here  #  Set defaults here
1048    COMMANDL="$0 $@"
1049    
1050  PLATFORM=  PLATFORM=
1051  LN=  LN=
1052  S64=  S64=
1053  KPP=  KPP=
1054  FC=  #FC=
1055    #CC=gcc
1056    #CPP=
1057  LINK=  LINK=
1058    DEFINES=
1059  PACKAGES=  PACKAGES=
1060  ENABLE=  ENABLE=
1061  DISABLE=  DISABLE=
1062  MAKEFILE=  # MAKEFILE=
1063  MAKEDEPEND=  # MAKEDEPEND=
1064  PDEPEND=  PKG_DEPEND=
1065  PDEFAULT=  PKG_GROUPS=
1066    DUMPSTATE=f
1067  OPTFILE=  OPTFILE=
1068  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1069  FFLAGS=  FFLAGS=
1070  FOPTIM=  FOPTIM=
1071    FEXTRAFLAGS=
1072    USE_EXTENDED_SRC=
1073    EXTENDED_SRC_FLAG=
1074    GET_FC_VERSION=
1075  CFLAGS=  CFLAGS=
1076  KFLAGS1=  KFLAGS1=
1077  KFLAGS2=  KFLAGS2=
1078    #LDADD=
1079  LIBS=  LIBS=
1080  KPPFILES=  KPPFILES=
1081  NOOPTFILES=  NOOPTFILES=
1082  NOOPTFLAGS=  NOOPTFLAGS=
1083    MPI=
1084    MPIPATH=
1085    OMP=
1086    OMPFLAG=
1087    USE_R4=
1088    TS=
1089    PAPIS=
1090    PCLS=
1091    FOOLAD=
1092    PAPI=
1093    PCL=
1094    HPMT=
1095    GSL=
1096    DEVEL=
1097    HAVE_TEST_L=
1098    
1099    # DEFINES checked by test compilation or command-line
1100    HAVE_SYSTEM=
1101    HAVE_FDATE=
1102    FC_NAMEMANGLE=
1103    HAVE_CLOC=
1104    # HAVE_SETRLSTK=
1105    HAVE_STAT=
1106    HAVE_NETCDF=
1107    HAVE_ETIME=
1108    IGNORE_TIME=
1109    
1110  MODS=  MODS=
1111  TOOLSDIR=  TOOLSDIR=
1112  SOURCEDIRS=  SOURCEDIRS=
1113  INCLUDEDIRS=  INCLUDEDIRS=
1114    STANDARDDIRS="USE_THE_DEFAULT"
1115    
1116    G2ARGS=
1117    BASH=
1118  PWD=`pwd`  PWD=`pwd`
1119  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1120  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1121    EMBED_SRC=
1122    THISHOST=`hostname`
1123  THISCWD=`pwd`  THISCWD=`pwd`
1124  THISDATE=`date`  THISDATE=`date`
1125    THISUSER=`echo $USER`
1126    THISVER=
1127  MACHINE=`uname -a`  MACHINE=`uname -a`
1128    EXECUTABLE=
1129    EXEHOOK=
1130    EXEDIR=
1131    IEEE=
1132    if test "x$MITGCM_IEEE" != x ; then
1133        IEEE=$MITGCM_IEEE
1134    fi
1135    FS=
1136    FS90=
1137    
1138    AUTODIFF_PKG_USED=f
1139    AD_OPTFILE=
1140    TAF=
1141    AD_TAF_FLAGS=
1142    FTL_TAF_FLAGS=
1143    SVD_TAF_FLAGS=
1144    TAF_EXTRA=
1145    TAMC=
1146    AD_TAMC_FLAGS=
1147    FTL_TAF_FLAGS=
1148    SVD_TAMC_FLAGS=
1149    TAMC_EXTRA=
1150    
1151    #  The following state can be set directly by command-line switches
1152    gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"
1153    gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"
1154    gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"
1155    
1156    #  The following state is not directly set by command-line switches
1157    gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"
1158    gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1159    gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1160    gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"
1161    gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"
1162    
1163    #  The following are all related to adjoint/tangent-linear stuff
1164    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1165    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1166    gm_s12="TAF_EXTRA TAMC_EXTRA"
1167    
1168    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1169    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1170    
1171    cat <<EOF
1172    
1173    GENMAKE :
1174    
1175    A program for GENerating MAKEfiles for the MITgcm project.
1176       For a quick list of options, use "genmake2 -h"
1177    or for more detail see the Developer's HOWTO manual at:
1178       http://mitgcm.org/public/docs.html
1179    
1180    EOF
1181    
1182    LOGFILE="genmake.log"
1183    #- clean-up previous genmake logfiles:
1184    rm -f genmake_state genmake_*optfile $LOGFILE
1185    
 echo  
1186  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
1187  gm_local="./gm_local"  gm_local="genmake_local"
1188  echo -n "  getting local config information:  "  printf "  getting local config information:  "
1189  if test -e $gm_local ; then  if test -f $gm_local ; then
1190      echo "using $gm_local"      echo "using $gm_local"
1191      source $gm_local      . $gm_local
1192      # echo "DISABLE=$DISABLE"      # echo "DISABLE=$DISABLE"
1193      # echo "ENABLE=$ENABLE"      # echo "ENABLE=$ENABLE"
1194  else  else
1195      echo "none found"      echo "none found"
1196  fi  fi
1197    
1198  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1199  #parse_options  #parse_options
   
1200  ac_prev=  ac_prev=
1201  for ac_option ; do  for ac_option in "$@" ; do
1202    
1203        G2ARGS="$G2ARGS \"$ac_option\""
1204    
1205      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1206      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 359  for ac_option ; do Line 1208  for ac_option ; do
1208          ac_prev=          ac_prev=
1209          continue          continue
1210      fi      fi
1211        
1212      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1213        
1214      case $ac_option in      case $ac_option in
1215                    
1216          -help | --help | -h | --h)          -help | --help | -h | --h)
# Line 370  for ac_option ; do Line 1219  for ac_option ; do
1219          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1220              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1221          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1222              ac_prev=optfile ;;              ac_prev=OPTFILE ;;
1223          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1224              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1225                    
1226            -adoptfile | --adoptfile | -adof | --adof)
1227                ac_prev=AD_OPTFILE ;;
1228            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1229                AD_OPTFILE=$ac_optarg ;;
1230            
1231          -pdepend | --pdepend)          -pdepend | --pdepend)
1232              ac_prev=pdepend ;;              ac_prev=PKG_DEPEND ;;
1233          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1234              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1235                    
1236          -pdefault | --pdefault)          -pgroups | --pgroups)
1237              ac_prev=pdefault ;;              ac_prev=PKG_GROUPS ;;
1238          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1239              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1240                    
1241          -makefile | -ma)          -make | --make | -m | --m)
1242              ac_prev=makefile ;;              ac_prev=MAKE ;;
1243          --makefile=* | -ma=*)          -make=* | --make=* | -m=* | --m=*)
1244                MAKE=$ac_optarg ;;
1245            
1246            -bash | --bash)
1247                ac_prev=BASH ;;
1248            -bash=* | --bash=*)
1249                BASH=$ac_optarg ;;
1250            
1251            -makedepend | --makedepend | -md | --md)
1252                ac_prev=MAKEDEPEND ;;
1253            -makedepend=* | --makedepend=* | -md=* | --md=*)
1254                MAKEDEPEND=$ac_optarg ;;
1255            
1256            -makefile | --makefile | -ma | --ma)
1257                ac_prev=MAKEFILE ;;
1258            -makefile=* | --makefile=* | -ma=* | --ma=*)
1259              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1260                    
1261          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1262              ac_prev=platform ;;              echo "ERROR: The platform option has been removed.  Please specify"
1263          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1264              PLATFORM=$ac_optarg ;;              echo
1265                usage
1266                ;;
1267                    
1268          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1269              ac_prev=rootdir ;;              ac_prev=ROOTDIR ;;
1270          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1271              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1272                    
1273          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1274              ac_prev=mods ;;              ac_prev=MODS ;;
1275          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1276              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1277                    
1278          -disable | --disable)          -disable | --disable)
1279              ac_prev=disable ;;              ac_prev=DISABLE ;;
1280          -disable=* | --disable=*)          -disable=* | --disable=*)
1281              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1282                    
1283          -enable | --enable)          -enable | --enable)
1284              ac_prev=enable ;;              ac_prev=ENABLE ;;
1285          -enable=* | --enable=*)          -enable=* | --enable=*)
1286              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1287                    
1288          -noopt | --noopt)          -standarddirs | --standarddirs)
1289              ac_prev=noopt ;;              ac_prev=STANDARDDIRS ;;
1290          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1291              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1292            
1293  #           -cpp | --cpp)  #           -cpp | --cpp)
1294  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1295  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1296  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1297                        
1298            -cc | --cc)
1299                ac_prev=CC ;;
1300            -cc=* | --cc=*)
1301                CC=$ac_optarg ;;
1302            
1303          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1304              ac_prev=fc ;;              ac_prev=FC ;;
1305          -fc=* | --fc=*)          -fc=* | --fc=*)
1306              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1307                    
1308            -fs | --fs)
1309                ac_prev=FS ;;
1310            -fs=* | --fs=*)
1311                FS=$ac_optarg ;;
1312            
1313            -fs90 | --fs90)
1314                ac_prev=FS90 ;;
1315            -fs90=* | --fs90=*)
1316                FS90=$ac_optarg ;;
1317            
1318            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1319                USE_R4=true ;;
1320    
1321          -ieee | --ieee)          -ieee | --ieee)
1322              IEEE=1 ;;              IEEE=true ;;
1323          -noieee | --noieee)          -noieee | --noieee)
1324              IEEE=0 ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1325                    -devel | --devel)
1326                IEEE=true ; DEVEL=true ;;
1327            -gsl | --gsl)
1328                GSL=true ;;
1329    
1330            -ts | --ts)
1331                TS=true ;;
1332            -papis | --papis)
1333                PAPIS=true ;;
1334            -pcls | --pcls)
1335                PCLS=true ;;
1336            -foolad | --foolad)
1337                FOOLAD=true ;;
1338            -papi | --papi)
1339                PAPI=true ;;
1340            -pcl | --pcl)
1341                PCL=true ;;
1342            -hpmt | --hpmt)
1343                HPMT=true ;;
1344    
1345          -mpi | --mpi)          -mpi | --mpi)
1346              MPI=1 ;;              MPI=true ;;
1347          -nompi | --nompi)          -mpi=* | --mpi=*)
1348              MPI=0 ;;              MPIPATH=$ac_optarg
1349                        MPI=true ;;
1350          -jam | --jam)          
1351              JAM=1 ;;          -omp | --omp)
1352          -nojam | --nojam)              OMP=true ;;
1353              JAM=0 ;;          -omp=* | --omp=*)
1354                OMPFLAG=$ac_optarg
1355                OMP=true ;;
1356            
1357            -ds | --ds)
1358                DUMPSTATE=t ;;
1359            
1360            -extra_flag | --extra_flag)
1361                ac_prev=FEXTRAFLAGS ;;
1362            -extra_flag=* | --extra_flag=*)
1363                FEXTRAFLAGS=$ac_optarg ;;
1364            
1365            -taf_extra | --taf_extra)
1366                ac_prev=TAF_EXTRA ;;
1367            -taf_extra=* | --taf_extra=*)
1368                TAF_EXTRA=$ac_optarg ;;
1369    
1370            -tamc_extra | --tamc_extra)
1371                ac_prev=TAMC_EXTRA ;;
1372            -tamc_extra=* | --tamc_extra=*)
1373                TAMC_EXTRA=$ac_optarg ;;
1374                    
1375            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1376                IGNORE_TIME="-DIGNORE_TIME" ;;
1377    
1378            -es | --es | -embed-source | --embed-source)
1379                EMBED_SRC=t ;;
1380    
1381          -*)          -*)
1382              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1383              usage              usage
# Line 455  for ac_option ; do Line 1389  for ac_option ; do
1389              ;;              ;;
1390                    
1391      esac      esac
       
 done  
   
 echo "  getting OPTFILE information:  "  
 if test "x${OPTFILE}" = x ; then  
     echo "Warning: no OPTFILE specified so we'll look for possible settings"  
     printf "\n===  Searching for possible settings for OPTFILE  ===\n"  
     find_possible_configs  
 else  
     if test "x$OPTFILE" = xNONE ; then  
         echo "    OPTFILE=NONE so we'll try to use default settings"  
     else  
         if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  
             echo "    using OPTFILE=\"$OPTFILE\""  
             source "$OPTFILE"  
             RETVAL=$?  
             if test "x$RETVAL" != x0 ; then  
                 echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
                 echo "--please check that variable syntax is bash-compatible"  
                 exit 1  
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
             exit 1  
         fi  
     fi  
 fi  
1392    
 printf "\n===  Setting defaults  ===\n"  
 echo -n "  Adding MODS directories:  "  
 for d in $MODS ; do  
     if test ! -d $d ; then  
         echo  
         echo "Error: MODS directory \"$d\" not found!"  
         exit 1  
     else  
         echo -n " $d"  
         SOURCEDIRS="$SOURCEDIRS $d"  
         INCLUDEDIRS="$INCLUDEDIRS $d"  
     fi  
1393  done  done
 echo  
1394    
1395  if test "x$MAKEFILE" = x ; then  if test -f ./.genmakerc ; then
1396      MAKEFILE="Makefile"      echo
1397  fi      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1398  if test "x${PLATFORM}" = x ; then      echo "  file.  This file format is no longer supported.  For directions on"
1399      PLATFORM=$p_PLATFORM      echo "  how to setup and use the new \"genmake2\" script, please see:"
1400        echo "    http://mitgcm.org/public/devel_HOWTO/"
1401        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1402        echo "WARNING: ignore \"./.genmakerc\" and continue."
1403        echo
1404  fi  fi
1405    
1406    #  Find the MITgcm ${ROOTDIR}
1407  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1408      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1409        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1410          ROOTDIR=".."          ROOTDIR=".."
1411      else      else
1412          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1413              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1414                  ROOTDIR=$d                  ROOTDIR=$d
1415                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1416                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1417                  break                  break
1418              fi              fi
1419          done          done
# Line 530  if test ! -d ${ROOTDIR} ; then Line 1430  if test ! -d ${ROOTDIR} ; then
1430      exit 1      exit 1
1431  fi  fi
1432    
1433    #  Find the MITgcm ${THISVER}
1434    version_file="${ROOTDIR}/doc/tag-index"
1435    if test -f $version_file ; then
1436        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1437    #-  remove ./BUILD_INFO.h file if older than version_file
1438        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1439            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1440            rm -f ./BUILD_INFO.h
1441        fi
1442    fi
1443    
1444    if test "x$MAKEFILE" = x ; then
1445        MAKEFILE="Makefile"
1446    fi
1447    
1448    echo "  getting OPTFILE information:"
1449    if test "x${OPTFILE}" = x ; then
1450        if test "x$MITGCM_OF" = x ; then
1451            echo "Warning: no OPTFILE specified so we'll look for possible settings"
1452            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1453            find_possible_optfile
1454        else
1455            OPTFILE=$MITGCM_OF
1456        fi
1457    fi
1458    if test "x$OPTFILE" != xNONE ; then
1459        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1460            echo "    using OPTFILE=\"$OPTFILE\""
1461            . "$OPTFILE"
1462            RETVAL=$?
1463            if test "x$RETVAL" != x0 ; then
1464                printf "Error: failed to source OPTFILE \"$OPTFILE\""
1465                echo "--please check that variable syntax is bash-compatible"
1466                exit 1
1467            fi
1468            if test "x$DUMPSTATE" = xt ; then
1469                cp -f $OPTFILE "genmake_optfile"
1470            fi
1471        else
1472            echo "Error: can't read OPTFILE=\"$OPTFILE\""
1473            exit 1
1474        fi
1475    fi
1476    
1477    echo "  getting AD_OPTFILE information:"
1478    if test "x${AD_OPTFILE}" = x ; then
1479        if test "x$MITGCM_AD_OF" = x ; then
1480            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1481        else
1482            AD_OPTFILE=$MITGCM_AD_OF
1483        fi
1484    fi
1485    if test "x${AD_OPTFILE}" != xNONE ; then
1486        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1487            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1488            . "$AD_OPTFILE"
1489            RETVAL=$?
1490            if test "x$RETVAL" != x0 ; then
1491                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1492                echo "--please check that variable syntax is bash-compatible"
1493                exit 1
1494            fi
1495            if test "x$DUMPSTATE" = xt ; then
1496                cp -f $AD_OPTFILE "genmake_ad_optfile"
1497            fi
1498        else
1499            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1500            exit 1
1501        fi
1502    fi
1503    
1504    #====================================================================
1505    #  Set default values if not set by the optfile
1506    #
1507    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1508    #  either set defaults or complain and abort!
1509    if test ! "x$BASH" = x ; then
1510        # add a trailing space so that it works within the Makefile syntax (see below)
1511        BASH="$BASH "
1512    fi
1513    if test "x$FC" = x ; then
1514        cat <<EOF 1>&2
1515    
1516    Error: no Fortran compiler: please specify using one of the following:
1517      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1518      2) the "-fc=XXX" command-line option
1519      3) the "./genmake_local" file
1520    EOF
1521        exit 1
1522    fi
1523    if test "x$GET_FC_VERSION" != x ; then
1524      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1525      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1526      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1527      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1528      if test -s genmake_fc_vers1 ; then
1529        cat genmake_fc_vers1 >> $LOGFILE
1530      else
1531        cat genmake_fc_vers2 >> $LOGFILE
1532      fi
1533      echo "<-- compiler version ----" >> $LOGFILE
1534      rm -f genmake_fc_vers1 genmake_fc_vers2
1535    fi
1536    
1537    if test "x$CC" = x ; then
1538        look_for_C_compilers
1539    fi
1540    
1541    if test "x$LINK" = x ; then
1542        LINK=$FC
1543    fi
1544    if test "x$MAKE" = x ; then
1545        MAKE="make"
1546    fi
1547    if test "x$CPP" = x ; then
1548        CPP="cpp -traditional -P"
1549    fi
1550    #EH3 === UGLY ===
1551    #  The following is an ugly little hack to check for $CPP in /lib/ and
1552    #  it should eventually be replaced with a more general function that
1553    #  searches a combo of the user's path and a list of "usual suspects"
1554    #  to find the correct location for binaries such as $CPP.
1555    for i in " " "/lib/" ; do
1556        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1557    done
1558    #EH3 === UGLY ===
1559    echo "#define A a" | $CPP > test_cpp 2>&1
1560    RETVAL=$?
1561    if test "x$RETVAL" != x0 ; then
1562        cat <<EOF 1>&2
1563    
1564    Error: C pre-processor "$CPP" failed the test case: please specify using:
1565    
1566      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1567      2) the "./genmake_local" file
1568      3) with the CPP environment variable
1569    
1570    EOF
1571        exit 1
1572    else
1573        rm -f test_cpp
1574    fi
1575    
1576    look_for_makedepend
1577    
1578    #  Check that soft-link command is set and usable
1579    if test "x$LN" = x ; then
1580        LN="ln -s"
1581    fi
1582    echo "test" > genmake_test_ln
1583    $LN genmake_test_ln genmake_tlink
1584    RETVAL=$?
1585    if test "x$RETVAL" != x0 ; then
1586        cat <<EOF 1>&2
1587    
1588    Error: The command "$LN" failed -- please specify a working soft-link
1589      command in the optfile.
1590    
1591    EOF
1592        exit 1
1593    fi
1594    test -L genmake_tlink > /dev/null 2>&1
1595    RETVAL=$?
1596    if test "x$RETVAL" = x0 ; then
1597        HAVE_TEST_L=t
1598    fi
1599    rm -f genmake_test_ln genmake_tlink
1600    
1601    #  Check for broken *.F/*.f handling and fix if possible
1602    check_for_broken_Ff
1603    
1604    if test ! "x$MPI" = x ; then
1605          echo "  Turning on MPI cpp macros"
1606          DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"
1607    fi
1608    if test ! "x$OMP" = x ; then
1609          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1610          FFLAGS="$FFLAGS $OMPFLAG"
1611          F90FLAGS="$F90FLAGS $OMPFLAG"
1612          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1613    fi
1614    
1615    if test ! "x$USE_R4" = x ; then
1616          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1617          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1618    fi
1619    
1620    if test ! "x$TS" = x ; then
1621          echo "  Turning on timing per timestep"
1622          if test ! "x$FOOLAD" = x ; then
1623                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1624          else
1625                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1626          fi
1627          PACKAGES="$PACKAGES showflops"
1628    fi
1629    if test ! "x$PAPIS" = x ; then
1630          echo "  Turning on PAPI flop summary per timestep"
1631          echo "  Please make sure PAPIINC, PAPILIB are defined"
1632          if test ! "x$FOOLAD" = x ; then
1633                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1634          else
1635                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1636          fi
1637          INCLUDES="$INCLUDES $PAPIINC"
1638          LIBS="$LIBS $PAPILIB"
1639          PACKAGES="$PACKAGES showflops"
1640    fi
1641    if test ! "x$PCLS" = x ; then
1642          echo "  Turning on PCL counter summary per timestep"
1643          echo "  Please make sure PCLINC, PCLLIB are defined"
1644          if test ! "x$FOOLAD" = x ; then
1645                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1646          else
1647                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1648          fi
1649          INCLUDES="$INCLUDES $PCLINC"
1650          LIBS="$LIBS $PCLLIB"
1651          PACKAGES="$PACKAGES showflops"
1652    fi
1653    if test ! "x$PAPI" = x ; then
1654          if test ! "x$PAPIS" = x ; then
1655              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1656              echo "  Sticking with PAPI flop summary per timestep!"
1657          else
1658              echo "  Turning on performance analysis with PAPI"
1659              echo "  Please make sure PAPIINC, PAPILIB are defined"
1660              DEFINES="$DEFINES -DUSE_PAPI"
1661              INCLUDES="$INCLUDES $PAPIINC"
1662              LIBS="$LIBS $PAPILIB"
1663          fi
1664    fi
1665    if test ! "x$PCL" = x ; then
1666          if test ! "x$PCLS" = x ; then
1667              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1668              echo "  Sticking with PCL flop summary per timestep!"
1669          else
1670              echo "  Turning on performance analysis with PCL"
1671              echo "  Please make sure PCLINC, PCLLIB are defined"
1672              DEFINES="$DEFINES -DUSE_PCL"
1673              INCLUDES="$INCLUDES $PCLINC"
1674              LIBS="$LIBS $PCLLIB"
1675          fi
1676    fi
1677    if test ! "x$HPMT" = x ; then
1678          if test ! "x$PAPI" = x ; then
1679              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1680              echo "  Sticking with PAPI!"
1681          else if test ! "x$PCL" = x ; then
1682              echo "  PCL and the HPM Toolkit cannot co-exist!"
1683              echo "  Sticking with PCL!"
1684          else
1685              echo "  Turning on performance analysis with the HPM Toolkit"
1686              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1687              DEFINES="$DEFINES -DUSE_LIBHPM"
1688              INCLUDES="$INCLUDES $HPMTINC"
1689              LIBS="$LIBS $HPMTLIB"
1690          fi
1691          fi
1692    fi
1693    if test ! "x$GSL" = x ; then
1694          echo "  Turning on use of GSL to control floating point calculations"
1695          echo "  Please make sure GSLINC, GSLLIB are defined"
1696          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1697          INCLUDES="$INCLUDES $GSLINC"
1698          LIBS="$LIBS $GSLLIB"
1699    fi
1700    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1701    if test ! "x$USE_EXTENDED_SRC" = x ; then
1702          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1703          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1704    fi
1705    
1706    printf "\n===  Checking system libraries  ===\n"
1707    printf "  Do we have the system() command using $FC...  "
1708    cat > genmake_tcomp.$FS <<EOF
1709          program hello
1710          call system('echo hi')
1711          end
1712    EOF
1713    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1714    RETVAL=$?
1715    if test "x$RETVAL" = x0 ; then
1716        HAVE_SYSTEM=t
1717        DEFINES="$DEFINES -DHAVE_SYSTEM"
1718        echo "yes"
1719    else
1720        HAVE_SYSTEM=
1721        echo "no"
1722    fi
1723    rm -f genmake_tcomp*
1724    
1725    printf "  Do we have the fdate() command using $FC...  "
1726    cat > genmake_tcomp.$FS <<EOF
1727          program hello
1728          CHARACTER*(128) string
1729          string = ' '
1730          call fdate( string )
1731          print *, string
1732          end
1733    EOF
1734    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1735    RETVAL=$?
1736    if test "x$RETVAL" = x0 ; then
1737        HAVE_FDATE=t
1738        DEFINES="$DEFINES -DHAVE_FDATE"
1739        echo "yes"
1740    else
1741        HAVE_FDATE=
1742        echo "no"
1743    fi
1744    rm -f genmake_tcomp*
1745    
1746    printf "  Do we have the etime() command using $FC...  "
1747    cat > genmake_tcomp.$FS <<EOF
1748          program hello
1749          REAL*4 ACTUAL, TARRAY(2)
1750          EXTERNAL ETIME
1751          REAL*4 ETIME
1752          actual = etime( tarray )
1753          print *, tarray
1754          end
1755    EOF
1756    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1757    RETVAL=$?
1758    if test "x$RETVAL" = x0 ; then
1759        HAVE_ETIME=t
1760        DEFINES="$DEFINES -DHAVE_ETIME"
1761        echo "yes"
1762    else
1763        HAVE_ETIME=
1764        echo "no"
1765    fi
1766    rm -f genmake_tcomp*
1767    
1768    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1769    check_HAVE_CLOC
1770    if test "x$HAVE_CLOC" != x ; then
1771        echo "yes"
1772    else
1773        echo "no"
1774        if test "x$EMBED_SRC" = xt ; then
1775            echo "    WARNING: you requested file embedding but it has"
1776            echo "      been disabled since C code cannot be called"
1777            EMBED_SRC=
1778        fi
1779    fi
1780    rm -f genmake_t*
1781    
1782    printf "  Can we unlimit the stack size using $FC...  "
1783    check_HAVE_SETRLSTK
1784    if test "x$HAVE_SETRLSTK" = xt ; then
1785        echo "yes"
1786    else
1787        echo "no"
1788    fi
1789    rm -f genmake_t*
1790    
1791    printf "  Can we register a signal handler using $FC...  "
1792    check_HAVE_SIGREG
1793    if test "x$HAVE_SIGREG" = xt ; then
1794        echo "yes"
1795    else
1796        echo "no"
1797    fi
1798    rm -f genmake_t*
1799    
1800    printf "  Can we use stat() through C calls...  "
1801    check_HAVE_STAT
1802    if test "x$HAVE_STAT" != x ; then
1803        echo "yes"
1804    else
1805        echo "no"
1806    fi
1807    rm -f genmake_t*
1808    
1809    printf "  Can we create NetCDF-enabled binaries...  "
1810    check_netcdf_libs
1811    if test "x$HAVE_NETCDF" != x ; then
1812        echo "yes"
1813    else
1814        echo "no"
1815    fi
1816    DEFINES="$DEFINES $IGNORE_TIME"
1817    
1818    if test "x$EMBED_SRC" = xt ; then
1819        build_embed_encode
1820    fi
1821    if test "x$EMBED_SRC" = xt ; then
1822        ENABLE="$ENABLE embed_files"
1823    fi
1824    
1825    printf "\n===  Setting defaults  ===\n"
1826    printf "  Adding MODS directories: "
1827    for d in $MODS ; do
1828        if test ! -d $d ; then
1829            echo
1830            echo "Error: MODS directory \"$d\" not found!"
1831            exit 1
1832        else
1833            printf "$d "
1834            SOURCEDIRS="$SOURCEDIRS $d"
1835            INCLUDEDIRS="$INCLUDEDIRS $d"
1836        fi
1837    done
1838    echo
1839    
1840    #if test "x${PLATFORM}" = x ; then
1841    #    PLATFORM=$p_PLATFORM
1842    #fi
1843    
1844  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
1845      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1846        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
1847          EXEDIR=../exe          EXEDIR=../exe
1848      else      else
1849          EXEDIR=.          EXEDIR=.
# Line 542  if test ! -d ${EXEDIR} ; then Line 1854  if test ! -d ${EXEDIR} ; then
1854      exit 1      exit 1
1855  fi  fi
1856    
1857  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
1858      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
1859    fi
1860    if test ! -d ${TOOLSDIR} ; then
1861        echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
1862        exit 1
1863    fi
1864    if test "x$S64" = x ; then
1865        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
1866        RETVAL=$?
1867        if test "x${RETVAL}" = x0 ; then
1868            S64='$(TOOLSDIR)/set64bitConst.sh'
1869        else
1870            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
1871            RETVAL=$?
1872            if test "x${RETVAL}" = x0 ; then
1873                S64='$(TOOLSDIR)/set64bitConst.csh'
1874            else
1875                cat <<EOF
1876    
1877    ERROR: neither of the two default scripts:
1878    
1879        ${TOOLSDIR}/set64bitConst.sh
1880        ${TOOLSDIR}/set64bitConst.csh
1881    
1882      are working so please check paths or specify (with \$S64) a
1883      working version of this script.
1884    
1885    EOF
1886                exit 1
1887            fi
1888        fi
1889    fi
1890    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
1891    
1892    EXECUTABLE=${EXECUTABLE:-mitgcmuv}
1893    
1894    #  Set Standard Code Directories:
1895    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
1896        STANDARDDIRS="eesupp model"
1897  fi  fi
1898  if test ! -d ${TOOLSDIR} ; then  #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
1899      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"  echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
1900      exit 1  ckM=$?
1901    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
1902    ckE=$?
1903    if test $ckM = 0 -a $ckE = 1 ; then
1904        STANDARDDIRS="$STANDARDDIRS eesupp"
1905  fi  fi
1906    
 EXECUTABLE=${EXECUTABLE:-mitgcmuv}  
   
1907  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
1908  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
1909  #  they appear as regular source code  #  they appear as regular source code
1910  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
1911      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
1912      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
1913        ) > make_eesupp.errors 2>&1
1914      RETVAL=$?      RETVAL=$?
1915      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
1916          rm -f make_eesupp.errors          rm -f make_eesupp.errors
1917      else      else
1918          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
1919          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
1920          exit 1          exit 1
1921      fi      fi
1922  fi  fi
1923    
1924    #same for pkg/exch2 and pkg/regrid
1925    for pdir in exch2 regrid ; do
1926        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
1927            echo "  Making source files in pkg/${pdir} from templates"
1928            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
1929            ) > make_${pdir}.errors 2>&1
1930            RETVAL=$?
1931            if test "x${RETVAL}" = x0 ; then
1932                rm -f make_${pdir}.errors
1933            else
1934                echo "Error: problem encountered while building source files in pkg/${pdir}:"
1935                cat make_${pdir}.errors 1>&2
1936                exit 1
1937            fi
1938        fi
1939    done
1940    
1941  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
1942  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
1943      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
1944      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
1945          PDEPEND=$tmp  fi
1946      else  if  test "x${PKG_DEPEND}" = x ; then
1947          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
1948          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
1949  else  else
1950      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
1951          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
1952          exit 1          exit 1
1953      fi      fi
1954        echo "  getting package dependency info from  $PKG_DEPEND"
1955    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
1956        get_pdepend_list $PKG_DEPEND
1957  fi  fi
1958  echo "  getting package dependency info from  $PDEPEND"  
1959  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
1960  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
1961  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
1962      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
1963      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
1964  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
1965  if test ! "x${RETVAL}" = x0 ; then  fi
1966      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
1967      exit 1          echo "Warning:  No package groups information was specified."
1968            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
1969    else
1970        if test ! -r ${PKG_GROUPS} ; then
1971            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
1972            exit 1
1973        fi
1974        echo "  getting package groups info from      $PKG_GROUPS"
1975  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
1976    
1977  echo  -n "  checking default package list:  "  #  Search for packages to compile.
1978  if test "x${PDEFAULT}" = x ; then  echo "  checking list of packages to compile:"
1979      PDEFAULT="$ROOTDIR/pkg/pkg_default"  PKG_LIST=
1980    if test "x${PKG_LIST}" = x ; then
1981        for i in "." $MODS ; do
1982            if test -r $i"/packages.conf" ; then
1983                    PKG_LIST=$i"/packages.conf"
1984                    break
1985            fi
1986        done
1987  fi  fi
1988  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PKG_LIST}" = x ; then
1989      echo "default packages file disabled"      pkg_list='default_pkg_list'
1990        if test "x${PKG_GROUPS}" = x ; then
1991            echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
1992            exit 1
1993        fi
1994  else  else
1995      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
1996          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
1997          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
1998      else      else
1999          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2000          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2001          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2002          RETVAL=$?          RETVAL=$?
2003          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2004              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2005              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2006              exit 1              exit 1
2007          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    packages are:  $PACKAGES"  
2008      fi      fi
2009  fi  fi
2010    for i in $pkg_list ; do
2011        PACKAGES="$PACKAGES $i"
2012    done
2013    echo     "    before group expansion packages are:$PACKAGES"
2014    if test "x${PKG_GROUPS}" != x ; then
2015        RET=1
2016        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2017        echo "    after group expansion packages are: $PACKAGES"
2018    fi
2019    
2020  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2021    echo "" > ./.tmp_pack
2022    for i in $PACKAGES ; do
2023        echo $i >> ./.tmp_pack
2024    done
2025    for i in `grep  "-" ./.tmp_pack` ; do
2026        j=`echo $i | sed 's/[-]//'`
2027        DISABLE="$DISABLE $j"
2028    done
2029  pack=  pack=
2030  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2031      addit="t"      addit="t"
# Line 639  for p in $PACKAGES ; do Line 2040  for p in $PACKAGES ; do
2040  done  done
2041  PACKAGES="$pack"  PACKAGES="$pack"
2042  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2043  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
2044  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2045    # Test if each explicitly referenced package exists
2046  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2047      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2048          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2049          exit 1          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2050            exit 1
2051      fi      fi
2052      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2053  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2054  PACKAGES=  PACKAGES=
2055  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2056      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2057  done  done
2058  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2059    echo "    packages are: $PACKAGES"
2060    
2061    #  Check for package MNC: if NetCDF is available, then build the MNC
2062    #  template files ; otherwise, delete mnc from the list of packages.
2063    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2064    mnc_in=$?
2065    if test "x$HAVE_NETCDF" != xt ; then
2066        if test "x$mnc_in" = x0 ; then
2067            cat <<EOF
2068    *********************************************************************
2069    WARNING: the "mnc" package was enabled but tests failed to compile
2070      NetCDF applications.  Please check that:
2071    
2072      1) NetCDF is correctly installed for this compiler and
2073      2) the LIBS variable (within the "optfile") specifies the correct
2074           NetCDF library to link against.
2075    
2076      Due to this failure, the "mnc" package is now DISABLED.
2077    *********************************************************************
2078    EOF
2079            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2080            DISABLE="$DISABLE mnc"
2081        else
2082        #  this prevent to add mnc (due to pdepend rules) if not available
2083            DISABLE="$DISABLE mnc"
2084        fi
2085    else
2086        # we have NetCDF, we try to build MNC template files
2087        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2088        RETVAL=$?
2089        if test "x${RETVAL}" = x0 ; then
2090            rm -f make_mnc.errors
2091        else
2092            echo "Error: problem encountered while building source files in pkg/mnc:"
2093            cat make_mnc.errors 1>&2
2094            if test "x$mnc_in" = x0 ; then
2095                exit 1
2096            else
2097                DISABLE="$DISABLE mnc"
2098            fi
2099        fi
2100    fi
2101    
2102    #  Check for package PROFILES: if NetCDF is not available,
2103    #  then delete profiles from the list of available packages.
2104    if test "x$HAVE_NETCDF" != xt ; then
2105        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2106        RETVAL=$?
2107        if test "x$RETVAL" = x0 ; then
2108            cat <<EOF
2109    *********************************************************************
2110    WARNING: the "profiles" package was enabled but tests failed to
2111      compile NetCDF applications.  Please check that:
2112    
2113      1) NetCDF is correctly installed for this compiler and
2114      2) the LIBS variable (within the "optfile") specifies the correct
2115           NetCDF library to link against.
2116    
2117      Due to this failure, the "profiles" package is now DISABLED.
2118    *********************************************************************
2119    EOF
2120            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2121            DISABLE="$DISABLE profiles"
2122        else
2123        #  this prevent to add profiles (due to pdepend rules) if not available
2124            DISABLE="$DISABLE profiles"
2125        fi
2126    fi
2127    
2128  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2129  ck=    echo "  applying package dependency rules"
2130  while test "x$ck" != xtt ; do    ck=
2131      while test "x$ck" != xtt ; do
2132      i=0      i=0
2133      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2134      rtot=$nname      rtot=$nname
2135      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2136    
2137          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2138          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 674  while test "x$ck" != xtt ; do Line 2144  while test "x$ck" != xtt ; do
2144                  pin="t"                  pin="t"
2145              fi              fi
2146          done          done
2147            #  or in the current $STANDARDDIRS list?
2148            for p in $STANDARDDIRS ; do
2149                if test "x$p" = "x$pname" ; then pin="t" ; fi
2150            done
2151    
2152          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2153          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 696  while test "x$ck" != xtt ; do Line 2170  while test "x$ck" != xtt ; do
2170    
2171          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2172          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2173                #echo "   " $pname ": need to add :" $dname
2174              in_dis="f"              in_dis="f"
2175              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2176                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 716  while test "x$ck" != xtt ; do Line 2191  while test "x$ck" != xtt ; do
2191          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2192          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2193              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2194              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2195              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2196              exit 1              exit 1
2197          fi          fi
2198          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2199            #i=$(( $i + 1 ))
2200      done      done
2201      ck=$ck"t"      ck=$ck"t"
2202  done    done
2203  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2204    fi
2205  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2206      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2207      if test -d $adr ; then      if test -d $adr ; then
2208          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2209          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2210            if test "x$i" = xautodiff ; then
2211                AUTODIFF_PKG_USED=t
2212            fi
2213      else      else
2214          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2215          exit 1          exit 1
2216      fi      fi
2217  done  done
2218    
2219  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2220  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2221  #  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2222  # echo -n "  Setting package-specific CPP flags:  "  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths="$SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2223  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2224  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2225  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2226  all_pack=  all_pack=
2227    DISABLED_PACKAGES=
2228  for n in $names ; do  for n in $names ; do
2229      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2230          has_pack="f"          has_pack="f"
# Line 807  for n in $names ; do Line 2235  for n in $names ; do
2235              fi              fi
2236          done          done
2237          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2238              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2239              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2240          fi          fi
2241      fi      fi
2242  done  done
2243  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2244  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2245      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2246      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2247    #eh3 DEFINES="$DEFINES -D$def"
2248    
2249  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2250      case $i in      case $i in
2251          aim_v23)          aim_v23)
2252              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2253                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2254              ;;              ;;
2255      esac      esac
2256  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2257    
2258  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2259    
2260  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2261  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2262  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" != x ; then
2263  for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2264      adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2265      if test ! -d $adr ; then          if test ! -d $adr ; then
2266          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2267          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2268          exit 1              exit 1
2269      else          else
2270          SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2271      fi          fi
2272      adr="$ROOTDIR/$d/inc"          adr="$ROOTDIR/$d/inc"
2273      if test ! -d $adr ; then          if test ! -d $adr ; then
2274          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2275          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2276          exit 1              exit 1
2277      else          else
2278          INCLUDEDIRS="$INCLUDEDIRS $adr"              INCLUDEDIRS="$INCLUDEDIRS $adr"
2279            fi
2280        done
2281    fi
2282    
2283    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2284    echo "    of \"#define \"-type statements that are no longer allowed:"
2285    CPP_OPTIONS=
2286    CPP_EEOPTIONS=
2287    spaths=". $INCLUDEDIRS"
2288    names=`ls -1 "$ROOTDIR/pkg"`
2289    for i in $spaths ; do
2290        try="$i/CPP_OPTIONS.h"
2291        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2292            echo "    found CPP_OPTIONS=\"$try\""
2293            CPP_OPTIONS="$try"
2294            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2295            for n in $names ; do
2296                test_for_package_in_cpp_options $CPP_OPTIONS $n
2297            done
2298        fi
2299        try="$i/CPP_EEOPTIONS.h"
2300        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2301            echo "    found CPP_EEOPTIONS=\"$try\""
2302            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2303    #**** not yet enabled ****
2304    #        test_for_mpi_in_cpp_eeoptions $try
2305    #**** not yet enabled ****
2306            CPP_EEOPTIONS="$try"
2307      fi      fi
2308  done  done
2309    if test "x$CPP_OPTIONS" = x ; then
2310        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2311        exit 1
2312    fi
2313    
2314    #  Here, we build the list of files to be "run through" the adjoint
2315    #  compiler.
2316    if test -f ./adSrcFiles.tmp ; then
2317        rm -f ./adSrcFiles.tmp
2318    fi
2319    echo "  Creating the list of files for the adjoint compiler."
2320    touch adSrcFiles.tmp
2321    for i in $SOURCEDIRS ; do
2322        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2323        for j in $list_files ; do
2324            cat $i/$j >> adSrcFiles.tmp
2325        done
2326    done
2327    if test ! "x"$FS = "x.f" ; then
2328        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2329        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2330    fi
2331    
2332  echo  echo
2333  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2334  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2335  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2336      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2337          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2338      fi      fi
2339  done  done
2340    
2341    if test ! "x$DIVA" = x ; then
2342        echo "  Creating the pseudo-MPI include directory"
2343        INCLUDES="-I./mpi_headers $INCLUDES"
2344        rm -rf ./mpi_headers
2345        mkdir -p ./mpi_headers
2346    
2347        if test "x$MPIINCLUDEDIR" = x ; then
2348            if test "x$MPIHOME" = x ; then
2349                MPIHOME='/usr'
2350            fi
2351            MPIINCLUDEDIR='$MPIHOME/include'
2352        fi
2353    
2354        if test -r $MPIINCLUDEDIR/mpif.h ; then
2355            for i in $MPI_HEADER_FILES; do
2356                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
2357            done
2358    
2359            perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
2360        else
2361            echo " We cannot create a copy of mpif.h!"
2362    #       exit -1
2363        fi
2364    fi
2365    
2366  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2367  rm -rf .links.tmp  rm -rf .links.tmp
2368  mkdir .links.tmp  mkdir .links.tmp
2369    touch .links.tmp/foo
2370    if test ! -r ".links.tmp/foo" ; then
2371        echo
2372        echo "ERROR : something is wrong with your directory permissions or"
2373        echo "   your user file-creation mask (\"umask\") since creating a"
2374        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2375        echo "   not working.  Please try setting your umask to something"
2376        echo "   sane such as:"
2377        echo
2378        echo "      umask 0002"
2379        echo
2380        echo "   and please verify that you have the proper permissions for"
2381        echo "   creating sub-directories and then reading files created"
2382        echo "   within them."
2383        echo
2384        exit 1
2385    fi
2386    rm -f .links.tmp/foo
2387    
2388    if test "x$OPENAD" != x ; then
2389        OAD_DONT_COMPILE="/dev/null"
2390        OAD_DONT_TRANSFORM="/dev/null"
2391        OAD_KEEP_ORIGINAL="/dev/null"
2392        OAD_CB2M_FILES="/dev/null"
2393        echo "  looking for dontCompile file:  "
2394        for i in "." $MODS ; do
2395            if test -r $i"/dontCompile" ; then
2396                OAD_DONT_COMPILE=$i"/dontCompile"
2397                echo "     found $OAD_DONT_COMPILE"
2398                break
2399            fi
2400        done
2401        echo "  looking for dontTransform file:  "
2402        for i in "." $MODS ; do
2403            if test -r $i"/dontTransform" ; then
2404                OAD_DONT_TRANSFORM=$i"/dontTransform"
2405                echo "     found $OAD_DONT_TRANSFORM"
2406                break
2407            fi
2408        done
2409        echo "  looking for keepOriginal file:  "
2410        for i in "." $MODS ; do
2411            if test -r $i"/keepOriginal" ; then
2412                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2413                echo "     found $OAD_KEEP_ORIGINAL"
2414                break
2415            fi
2416        done
2417        echo "  looking for cb2mFiles:  "
2418        for i in "." $MODS ; do
2419            if test -r $i"/cb2mFiles" ; then
2420                OAD_CB2M_FILES=$i"/cb2mFiles"
2421                echo "     found $OAD_CB2M_FILES"
2422                break
2423            fi
2424        done
2425        echo "   OpenAD exceptions:  "
2426    fi
2427    
2428  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2429  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2430  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2431  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2432  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2433  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2434  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  printf 'H_SRC_FILES = '   > hsrclist.tmp
2435    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2436    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2437  for d in $alldirs ; do  for d in $alldirs ; do
2438      deplist=      deplist=
2439      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2440      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2441        if test "x$OPENAD" != x ; then
2442            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2443        fi
2444      for sf in $sfiles ; do      for sf in $sfiles ; do
2445          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2446              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2447                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2448                  touch .links.tmp/$sf                  case $d/$sf in
2449                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2450                  case $extn in                          ignore_f=t
2451                      F)                          ;;
2452                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2453                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2454                            ;;
2455                      ./FC_NAMEMANGLE.h)
2456                            ignore_f=t
2457                            ;;
2458                      ./BUILD_INFO.h)
2459                            ignore_f=t
2460                            ;;
2461                      ./EMBEDDED_FILES.h)
2462                            ignore_f=t
2463                            ;;
2464                      *)
2465                            #  For the local directory *ONLY*,
2466                            #  ignore all soft-links
2467                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2468                                ignore_f=t
2469                            else
2470                                touch .links.tmp/$sf
2471                                deplist="$deplist $sf"
2472                            fi
2473                            ;;
2474                    esac
2475                    if test "x$ignore_f" = xf ; then
2476                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2477                        case $extn in
2478                          F)
2479                            echo    " \\"  >> F77srclist.tmp
2480                            printf " $sf" >> F77srclist.tmp
2481                            if test "x$OPENAD" != x ; then
2482                                basename=${sf%%.F}
2483                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2484                                if test -z "$isAD" ; then
2485                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2486                                    if test -z "$toBeIgnored" ; then
2487                                        echo    " \\"  >> nonADF77srclist.tmp
2488                                        printf " $sf" >> nonADF77srclist.tmp
2489                                    else
2490                                        echo "    not to be compiled   :  $sf"
2491                                    fi
2492                                else # file is initially listed as an AD file we want to exclude it
2493                                     # or we want to retain the untransformed version
2494                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2495                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2496                                    if test -n "$notToBeTransformed"; then
2497                                        echo "    not to be transformed:  $sf"
2498                                    fi
2499                                    if test -n "$untransformedVersionToBeKept" ; then
2500                                        echo "    original to be kept  :  $sf"
2501                                    fi
2502                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2503                                        echo    " \\"  >> nonADF77srclist.tmp
2504                                        printf " $sf" >> nonADF77srclist.tmp
2505                                    fi
2506                                fi
2507                            fi
2508                          ;;                          ;;
2509                      F90)                      F90)
2510                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2511                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2512                          ;;                          ;;
2513                      c)                      c)
2514                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2515                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2516                          ;;                          ;;
2517                      h)                      h)
2518                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2519                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2520                          ;;                          ;;
2521                  esac                      flow)
2522                            echo    " \\"  >> ad_flow_files.tmp
2523                            printf " $sf" >> ad_flow_files.tmp
2524                            ;;
2525                       esac
2526                    fi
2527              fi              fi
2528          fi          fi
2529      done      done
2530      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2531          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2532            echo "" >> srclinks.tmp
2533          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2534          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2535          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2536    # This may happen when make thinks that a header file has to be "remade"
2537    # because a module it depends on has changed.  In this case we do nothing.
2538            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2539          fi
2540      fi      fi
2541  done  done
2542  rm -rf .links.tmp  rm -rf .links.tmp
2543  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2544  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2545  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2546  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2547    echo "" >> hsrclist.tmp
2548    echo "" >> ad_flow_files.tmp
2549    
2550    CMDLINE=$0
2551    for xx in "$@" ; do nw=`echo $xx | wc -w`
2552        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2553                            else CMDLINE="$CMDLINE '$xx'" ; fi
2554    done
2555    
2556  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2557      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2558  fi  fi
2559  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2560  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 946  echo "#    $MACHINE" >> $MAKEFILE Line 2562  echo "#    $MACHINE" >> $MAKEFILE
2562  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2563  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2564  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2565  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2566  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2567  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2568    
2569    EXE_AD=$EXECUTABLE"_ad"
2570    EXE_FTL=$EXECUTABLE"_ftl"
2571    EXE_SVD=$EXECUTABLE"_svd"
2572    
2573  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2574  #  #
2575    # OPTFILE="$OPTFILE"
2576    #
2577  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2578  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2579  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 970  cat >>$MAKEFILE <<EOF Line 2593  cat >>$MAKEFILE <<EOF
2593  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2594    
2595  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2596  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2597  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2598  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2599  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2600  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2601  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2602    
2603    #eh3  new defines for the adjoint work
2604    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2605    EXE_AD      = ${EXE_AD}
2606    EXE_FTL     = ${EXE_FTL}
2607    EXE_SVD     = ${EXE_SVD}
2608    
2609    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2610    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2611    
2612    # These files are created by Makefile
2613    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2614  EOF  EOF
2615    
2616  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2617        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2618    else
2619        echo "EMBEDDED_FILES = " >>$MAKEFILE
2620    fi
2621    
2622  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2623  # Unix ln (link)  # Unix ln (link)
2624  LN = ${LN}  LN = ${LN}
# Line 994  KPP = ${KPP} Line 2632  KPP = ${KPP}
2632  FC = ${FC}  FC = ${FC}
2633  # Fortran compiler  # Fortran compiler
2634  F90C = ${F90C}  F90C = ${F90C}
2635    # C compiler
2636    CC = ${CC}
2637  # Link editor  # Link editor
2638  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2639    
2640  # Defines for CPP  # Defines for CPP
2641  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 1005  INCLUDES = ${INCLUDES} Line 2645  INCLUDES = ${INCLUDES}
2645  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2646  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2647  # Optim./debug for FC  # Optim./debug for FC
2648  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2649  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2650  # Optim./debug for FC  # Optim./debug for FC
2651  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2652  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2653    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2654  # Flags for CC  # Flags for CC
2655  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2656  # Files that should not be optimized  # Files that should not be optimized
2657  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2658  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2659  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2660  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2661  # Name of the Mekfile  # Name of the Mekfile
2662  MAKEFILE=${MAKEFILE}  MAKEFILE=${MAKEFILE}
2663    
2664  EOF  EOF
2665    
2666  cat srclist.inc    >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2667  cat csrclist.inc   >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2668  cat f90srclist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2669  cat hlist.inc      >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2670  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2671  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2672  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2673    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2674  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2675    echo >> $MAKEFILE
2676    
2677    # add definitions for preprocessed sources
2678    # and note that not all systems allow case sensitive extensions
2679    # hence the $FS and $FS90 here.
2680    # for fixed format f90 files we use ff90 or FF90 resp
2681    # but these are not expected to be the original source files
2682    
2683    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2684    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2685    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2686    echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2687    echo >> $MAKEFILE
2688    echo '.SUFFIXES:' >> $MAKEFILE
2689    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2690    
2691  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2692    
 .SUFFIXES:  
 .SUFFIXES: .o .f .p .F .c .F90 .f90  
   
2693  all: \$(EXECUTABLE)  all: \$(EXECUTABLE)
2694  \$(EXECUTABLE): \$(OBJFILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2695            @echo Creating \$@ ...
2696          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2697    
2698  depend:  depend:
2699          @make links          @make links
2700          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
2701          ../../../tools/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2702            -rm -f makedepend.out
2703    
2704    lib: libmitgcmuv.a
2705    
2706    libmitgcmuv.a: \$(OBJFILES)
2707            ar rcv libmitgcmuv.a \$(OBJFILES)
2708            ar d   libmitgcmuv.a main.o
2709    
2710    obj: \$(OBJFILES)
2711    
2712  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2713    
2714  small_f: \$(F77FILES) \$(F90FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2715    
2716  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2717          @printf 'running ... '          @printf 'running ... '
2718          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2719    
2720    # remove most of the files that "make" generates
2721  clean:  clean:
2722          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2723            -rm -rf *.o
2724            -rm -rf *.$FS *.flowdir
2725            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2726    
2727    # remove most of the files that "make" and "make depend" generate
2728  Clean:  Clean:
2729          @make clean          @make clean
2730          @make cleanlinks          @make cleanlinks
2731          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2732            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log
2733            -rm -f genmake_warnings genmake_errors make.log
2734    
2735    # remove also the executable, files that "genmake2" generates (except Makefile)
2736    #         and output from a run (plus log files from testreport)
2737  CLEAN:  CLEAN:
2738          @make Clean          @make Clean
2739            -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak
2740            -rm -f $LOGFILE genmake_state genmake_*optfile
2741            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2742          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2743          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2744          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2745          -rm -f \$(EXECUTABLE)          -rm -f *.txt STD* *diagnostics.log datetime
2746            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2747            -rm -rf mnc_test_*
2748    
2749  makefile:  makefile:
2750          ${0} $@          $THIS_SCRIPT $G2ARGS
2751  cleanlinks:  cleanlinks:
2752          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2753    
2754  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2755  .F.f:  ${PACKAGES_DOT_H}:
2756            @echo Creating \$@ ...
2757            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2758    AD_CONFIG.h:
2759            @echo Creating \$@ ...
2760            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@
2761    FC_NAMEMANGLE.h:
2762            @echo Creating \$@ ...
2763            echo "$FC_NAMEMANGLE" > \$@
2764    
2765    BUILD_INFO.h:
2766            @echo Creating \$@ ...
2767    EOF
2768    
2769    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
2770    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
2771    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
2772    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
2773    
2774    if test "x$EMBED_SRC" = xt ; then
2775        cat >>$MAKEFILE <<EOF
2776    
2777    decode_files.o : EMBEDDED_FILES.h
2778    
2779    ##  \$(F77_PP_SRC_FILES)
2780    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2781            @echo Creating \$@ ...
2782            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
2783            -rm -f all_fF.tar.gz
2784            -gzip all_fF.tar
2785    
2786    EMBEDDED_FILES.h : all_fF.tar.gz
2787            @echo Creating \$@ ...
2788            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
2789    
2790    EOF
2791    fi
2792    
2793    cat >>$MAKEFILE <<EOF
2794    
2795    # The normal chain of rules is (  .F - .$FS - .o  )
2796    
2797    ## This nullifies any default implicit rules concerning these two file types:
2798    ## %.o : %.F
2799    
2800    .F.$FS:
2801          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2802  .f.o:  .$FS.o:
2803            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2804    .F.o:
2805          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
2806  .F90.f90:  .F90.$FS90:
2807          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2808  .f90.o:  .FF90.f$FS90:
2809            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2810    .$FS90.o:
2811          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
2812    .f$FS90.o:
2813            cp \$< \$(basename  \$<).f90
2814            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
2815  .c.o:  .c.o:
2816          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
2817    .flow.flowdir:
2818            \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2819    
2820  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
2821  .F.p:  .F.p:
2822          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@
2823  .p.f:  .p.$FS:
2824          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
2825    
2826  EOF  EOF
2827    
2828    #=========================================
2829    #===  Automatic Differentiation Rules  ===
2830    #===  for TAMC/TAF  ======================
2831    
2832    if test "x$OPENAD" = x ; then
2833    
2834    cat >>$MAKEFILE <<EOF
2835    
2836    TAMC           = ${TAMC}
2837    TAF            = ${TAF}
2838    
2839    TAF_EXTRA      = ${TAF_EXTRA}
2840    TAMC_EXTRA     = ${TAMC_EXTRA}
2841    
2842    EOF
2843    
2844    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
2845    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
2846    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
2847    for i in $ad_vars ; do
2848        name=$i
2849        t1="t2=\$"`echo "$i"`
2850        eval $t1
2851        printf "%-20s = " $name >> $MAKEFILE
2852        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
2853    done
2854    
2855    echo "  Add the source list for AD code generation"
2856    echo >> $MAKEFILE
2857    printf "AD_FILES = " >> $MAKEFILE
2858    AD_FILES=`cat adSrcFiles.tmp`
2859    for i in $AD_FILES ; do
2860        echo    " \\" >> $MAKEFILE
2861        printf " $i" >> $MAKEFILE
2862    done
2863    echo >> $MAKEFILE
2864    rm -f adSrcFiles.tmp
2865    
2866    cat >>$MAKEFILE <<EOF
2867    
2868    # ... AD ...
2869    adall: \$(EXE_AD)
2870    adtaf: ad_taf_output.$FS
2871    adtamc: ad_tamc_output.$FS
2872    
2873    ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)
2874            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template
2875            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2876            -rm -f ad_config.template
2877            @make \$(F77_PP_SRC_FILES)
2878            @make \$(FLOFILES)
2879            cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
2880    
2881    ad_taf_output.$FS: ad_input_code.$FS
2882            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2883            ls -l ad_input_code_ad.$FS
2884            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2885    
2886    adtafonly:
2887            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
2888            ls -l ad_input_code_ad.$FS
2889            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
2890    
2891    \${EXE_AD}: ad_taf_output.o \$(OBJFILES)
2892            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
2893    
2894    ad_tamc_output.$FS: ad_input_code.$FS
2895            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
2896            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
2897    
2898    ad_tamc: ad_tamc_output.o \$(OBJFILES)
2899            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
2900    
2901    adonlyfwd:
2902            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
2903    
2904    adtrick:
2905            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
2906    
2907    adobj: ad_taf_output.o \$(OBJFILES)
2908    
2909    # ... FTL ...
2910    ftlall: ftl_taf
2911    ftltaf: ftl_taf_output.$FS
2912    ftltamc: ftl_tamc_output.$FS
2913    
2914    ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)
2915            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2916            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2917            -rm -f ftl_config.template
2918            @make \$(F77_PP_SRC_FILES)
2919            @make \$(AD_FLOW_FILES)
2920            cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS
2921    
2922    ftl_taf_output.$FS: ftl_input_code.$FS
2923            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2924            ls -l ftl_input_code_ftl.$FS
2925            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2926    
2927    ftltafonly:
2928            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
2929            ls -l ftl_input_code_ftl.$FS
2930            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
2931    
2932    ftl_taf: ftl_taf_output.o \$(OBJFILES)
2933            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
2934    
2935    ftl_tamc_output.$FS: ftl_input_code.$FS
2936            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
2937            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
2938    
2939    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
2940            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
2941    
2942    # ... SVD ...
2943    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
2944            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
2945            @echo "--->>> Do make svdall afterwards to compile. <<<---"
2946    svdall: svd_touch svd_taf
2947    
2948    svd_taf: \$(OBJFILES)
2949            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
2950    
2951            @echo "--->>> Only COMPILE svd code! <<<---"
2952            @echo "--->>> Assumes you previously <<<---"
2953            @echo "--->>> did make svdtaf        <<<---"
2954    
2955    svd_touch:
2956            @echo "--->>> Only COMPILE svd code! <<<---"
2957            @echo "--->>> Assumes you previously <<<---"
2958            @echo "--->>> did make svdtaf        <<<---"
2959            touch ad_taf_output.$FS ftl_taf_output.$FS
2960            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
2961            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
2962            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template
2963            cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h
2964            -rm -f ftl_config.template
2965    
2966    EOF
2967    
2968    fi
2969    
2970    #===  for OpenAD  ========================
2971    
2972    if test "x$OPENAD" != x ; then
2973    
2974    # ============ begin OpenAD specific section ==============
2975    
2976    cat >>$MAKEFILE <<EOF
2977    
2978    # all the source files linked from the various locations:
2979    ALL_LINKED_FILES= \
2980    \$(F77_SRC_FILES) \
2981    \$(C_SRC_FILES) \
2982    \$(H_SRC_FILES) \
2983    \$(F90_SRC_FILES) \
2984    \$(SPECIAL_FILES)
2985    
2986    ifndef OPENADROOT
2987      \$(error "Error:  environment variable OPENADROOT not defined!")
2988    endif
2989    
2990    ifndef XAIFSCHEMAROOT
2991      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
2992    endif
2993    
2994    ifndef XAIFBOOSTERROOT
2995      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
2996    endif
2997    
2998    EOF
2999    
3000    echo "  Add the source list for common block to module conversion "
3001    echo >> $MAKEFILE
3002    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3003    for i in `cat ${OAD_CB2M_FILES}` ; do
3004      echo    " \\" >> $MAKEFILE
3005      printf " $i" >> $MAKEFILE
3006    done
3007    echo >> $MAKEFILE
3008    
3009    echo "  Add the source list for AD code generation"
3010    echo >> $MAKEFILE
3011    printf "AD_FILES = " >> $MAKEFILE
3012    for i in `cat ${OAD_CB2M_FILES}` ; do
3013      echo    " \\" >> $MAKEFILE
3014      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3015    done
3016    AD_FILES=`cat adSrcFiles.tmp`
3017    for i in $AD_FILES ; do
3018      basename=${i%%.f}
3019      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3020      if test -z "$toBeIgnored" ; then
3021        echo    " \\" >> $MAKEFILE
3022        printf " $i" >> $MAKEFILE
3023      fi
3024    done
3025    echo >> $MAKEFILE
3026    rm -f adSrcFiles.tmp
3027    
3028    cat >>$MAKEFILE <<EOF
3029    
3030    adAll: \$(EXE_AD)
3031    .PHONY: adAll
3032    
3033    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3034    
3035    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3036    
3037    .PHONY: adDepend
3038    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3039            \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3040            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3041            -rm -f makedepend.out
3042    
3043    OPENAD_SUPPORT_F90_SRC_FILES = \
3044    w2f__types.F90 \
3045    OAD_active.F90 \
3046    OAD_cp.F90 \
3047    OAD_rev.F90 \
3048    OAD_tape.F90
3049    
3050    OPENAD_SUPPORT_C_SRC_FILES = \
3051    iaddr.c \
3052    timeRatio.c
3053    
3054    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3055            cat \$^ > \$@
3056    
3057    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3058            cat \$^ > \$@
3059    
3060    f95_test.out: f95_test_mods.f90 f95_test.f90
3061            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3062            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3063    
3064    # the file included below is created by the
3065    # postProcessor and its inclusion sets the
3066    # variable POSTPROCESSEDFILES
3067    # used below. Because the file is made during
3068    # make it won't be read until the second (recursive)
3069    # invocation in the rule below
3070    -include postProcess.make
3071    
3072    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)
3073    
3074    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3075    
3076    postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)
3077    ifeq (\$(MAKELEVEL),0)
3078            \$(MAKE) adAll
3079    else
3080            touch \$@
3081    endif
3082    
3083    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)
3084    ifeq (\$(MAKELEVEL),1)
3085            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3086    else
3087            touch \$@
3088    endif
3089    
3090    # makefile debug rule
3091    openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3092    .PHONY: openad
3093    
3094    # create the module files
3095    %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk
3096            ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk
3097    
3098    # create the header files
3099    %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk
3100            ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3101    
3102    # change everybody else to use the new module files:
3103    %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash
3104            ../OAD_support/cb2mUseModules.bash $< ${MPI}
3105    
3106    # makefile debug rule
3107    small_f: \$(CB2M_F90_PP_SRC_FILES)
3108    .PHONY: small_f
3109    
3110    ad_output.txt: \$(EXE_AD)
3111            @printf 'linking data files ... '
3112            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3113            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3114            @printf 'running ... '
3115            @./\$(EXE_AD) > \$@
3116    
3117    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3118    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3119            cat \$^ > \$@
3120    
3121    # strip all comments and blanks to reduce
3122    # the file size in order to reduce perl's memory requirements
3123    ad_input_code_sf.f$FS90 : ad_input_code.f$FS90
3124            cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@
3125    
3126    # mfef90 preprocessing
3127    # expand statement functions
3128    # expose mfef90 specific substring handling
3129    # add the w2f__types module
3130    ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90
3131            ./mfef90 -r8 -z -F -N132 \$<
3132            mv \$<.B \$(basename \$<).B
3133            ./whirl2f -openad \$(basename \$<).B
3134            cat w2f__types.f90 \$(basename \$<).w2f.f > \$@
3135    
3136    # canonicalizer
3137    ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py
3138            ./preProcess.py --timing --r8 -H -S \$< -o \$@
3139    
3140    # F -> WHIRL
3141    # note that the canonicalized version cuts off at col 72
3142    # doing this also for string constants which is ok as long
3143    # as we are in fixed mode and cut of exactly there.
3144    # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)
3145    # characters respectively.
3146    ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90
3147            ./mfef90 -r8 -z -F \$<
3148            mv \$<.B \$@
3149    
3150    # WHIRL -> XAIF
3151    ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif
3152            ./whirl2xaif -s -n --debug 1 -o \$@ \$<
3153    
3154    # XAIF -> XAIF'
3155    ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver
3156            ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3157    
3158    # XAIF' -> WHIRL'
3159    ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl
3160            ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<
3161    
3162    # WHIRL' -> F'
3163    ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be
3164            ./whirl2f -FLIST:ftn_file=\$@ -openad \$<
3165    
3166    # insert template directives
3167    ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash
3168            ../OAD_support/insertTemplateDir.bash \$< \$@
3169    
3170    PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F
3171    # postprocess F'
3172    postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)
3173            # the target is a placeholder to signal execution of the rule
3174            touch \$@
3175            # this step also creates the file postProcess.make but we cannot
3176            # name it as the target or else make will try to remake it for
3177            # the include directive above for any rule, e.g. make clean
3178            ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<
3179    
3180    # setup some links
3181    %.xsd:
3182            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3183    
3184    mfef90:
3185            \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .
3186    
3187    # link the support files:
3188    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3189            \$(LN) ../OAD_support/\$@ .
3190    
3191    whirl2xaif xaif2whirl:
3192            \$(LN) \${OPENADFORTTK}/bin/\$@ .
3193    
3194    preProcess.py postProcess.py:
3195            \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .
3196    
3197    whirl2f whirl2f_be:
3198            \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .
3199    
3200    oadDriver:
3201            \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@
3202    
3203    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)
3204    
3205    # ============ end OpenAD specific section ==============
3206    
3207    EOF
3208    
3209    fi
3210    
3211    #=========================================
3212    
3213    if test "x$EXEHOOK" != x ; then
3214        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3215    fi
3216    
3217  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
3218  for i in $KPPFILES ; do  for i in $KPPFILES ; do
3219      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 1098  for i in $KPPFILES ; do Line 3221  for i in $KPPFILES ; do
3221      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3222          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3223      fi      fi
3224      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3225  done  done
3226    
3227  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1108  for i in $NOOPTFILES ; do Line 3231  for i in $NOOPTFILES ; do
3231      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3232          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3233      fi      fi
3234      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3235      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3236  done  done
3237    
# Line 1120  echo "  Adding makedepend marker" Line 3243  echo "  Adding makedepend marker"
3243  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
3244    
3245  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3246    
3247    # Create special header files
3248    $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3249    if test ! -f $PACKAGES_DOT_H ; then
3250        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3251    else
3252        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3253        RETVAL=$?
3254        if test "x$RETVAL" = x0 ; then
3255            rm -f $PACKAGES_DOT_H".tmp"
3256        else
3257            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3258            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3259        fi
3260    fi
3261    if test ! -f AD_CONFIG.h ; then
3262        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h
3263    fi
3264    
3265    #  Write the "state" for future records
3266    if test "x$DUMPSTATE" = xt ; then
3267        printf "" > genmake_state
3268        for i in $gm_state ; do
3269            t1="t2=\$$i"
3270            eval $t1
3271            echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3272        done
3273    fi

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