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revision 1.13.2.6 by edhill, Tue Oct 21 03:06:07 2003 UTC revision 1.282 by jmc, Thu Mar 30 18:06:38 2017 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -optfile NAME | --optfile NAME | -of NAME | --of NAME
36          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
37              Use "NAME" as the optfile.  By default, an attempt will be
38              made to find an appropriate "standard" optfile in the
39              tools/build_options/ directory.
40    
41        -pdepend NAME | --pdepend NAME
42          -pdepend=NAME | --pdepend=NAME
43              Get package dependency information from "NAME".
44    
45        -pgroups NAME | --pgroups NAME
46          -pgroups=NAME | --pgroups=NAME
47              Get the package groups information from "NAME".
48    
49        -bash NAME
50              Explicitly specify the Bourne or BASH shell to use
51    
52        -make NAME | -m NAME
53          --make=NAME | -m=NAME
54              Use "NAME" for the MAKE program. The default is "make" but
55              many platforms, "gmake" is the preferred choice.
56    
57        -makefile NAME | -mf NAME
58          --makefile=NAME | -mf=NAME
59              Call the makefile "NAME".  The default is "Makefile".
60    
61        -makedepend NAME | -md NAME
62          --makedepend=NAME | -md=NAME
63              Use "NAME" for the MAKEDEPEND program.
64    
65        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
66          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
67              Specify the location of the MITgcm ROOTDIR as "NAME".
68              By default, genamke will try to find the location by
69              looking in parent directories (up to the 5th parent).
70    
71        -mods NAME | --mods NAME | -mo NAME | --mo NAME
72          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
73              Here, "NAME" specifies a list of directories that are
74              used for additional source code.  Files found in the
75              "mods list" are given preference over files of the same
76              name found elsewhere.
77    
78        -disable NAME | --disable NAME
79          -disable=NAME | --disable=NAME
80              Here "NAME" specifies a list of packages that we don't
81              want to use.  If this violates package dependencies,
82              genamke will exit with an error message.
83    
84        -enable NAME | --enable NAME
85          -enable=NAME | --enable=NAME
86              Here "NAME" specifies a list of packages that we wish
87              to specifically enable.  If this violates package
88              dependencies, genamke will exit with an error message.
89    
90        -standarddirs NAME | --standarddirs NAME
91          -standarddirs=NAME | --standarddirs=NAME
92              Here, "NAME" specifies a list of directories to be
93              used as the "standard" code.
94    
95        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
96          -fc=NAME | --fc=NAME
97              Use "NAME" as the fortran compiler.  By default, genmake
98              will search for a working compiler by trying a list of
99              "usual suspects" such as g77, f77, etc.
100    
101        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
102              Use "NAME" as the C compiler.  By default, genmake
103              will search for a working compiler by trying a list of
104              "usual suspects" such as gcc, c89, cc, etc.
105    
106        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
107              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
108              *only* works if CPP_EEOPTIONS.h allows this.
109    
110        -ignoretime | -ignore_time | --ignoretime | --ignore_time
111              Ignore all the "wall clock" routines entirely.  This will
112              not in any way hurt the model results -- it simply means
113              that the code that checks how long the model spends in
114              various routines will give junk values.
115    
116        -ts | --ts
117              Produce timing information per timestep
118        -papis | --papis
119              Produce summary MFlop/s (and IPC) with PAPI per timestep
120        -pcls | --pcls
121              Produce summary MFlop/s etc. with PCL per timestep
122        -foolad | --foolad
123              Fool the AD code generator
124        -papi | --papi
125              Performance analysis with PAPI
126        -pcl | --pcl
127              Performance analysis with PCL
128        -hpmt | --hpmt
129              Performance analysis with the HPM Toolkit
130    
131        -ieee | --ieee
132              use IEEE numerics.  Note that this option *only* works
133              if it is supported by the OPTFILE that is being used.
134        -devel | --devel
135              Add additional warning and debugging flags for development
136              (if supported by the OPTFILE); also switch to IEEE numerics.
137        -gsl | --gsl
138              Use GSL to control floating point rounding and precision
139    
140        -mpi | --mpi
141              Include MPI header files and link to MPI libraries
142        -mpi=PATH | --mpi=PATH
143              Include MPI header files and link to MPI libraries using MPI_ROOT
144              set to PATH. i.e. Include files from \$PATH/include, link to libraries
145              from \$PATH/lib and use binaries from \$PATH/bin.
146    
147        -omp | --omp
148              Activate OpenMP code
149        -omp=OMPFLAG | --omp=OMPFLAG
150              Activate OpenMP code + use Compiler option OMPFLAG
151    
152        -es | --es | -embed-source | --embed-source
153              Embed a tarball containing the full source code
154              (including the Makefile, etc.) used to build the
155              executable [off by default]
156    
157        -ds | --ds
158              Report genmake internal variables status (DUMPSTATE)
159              to file "genmake_state" (for debug purpose)
160    
161      While it is most often a single word, the "NAME" variables specified
162      above can in many cases be a space-delimited string such as:
163    
164        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
165        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
166        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
167    
168      which, depending upon your shell, may need to be single-quoted.
169    
170      For more detailed genmake documentation, please see:
171    
172        http://mitgcm.org/public/devel_HOWTO/
173    
174    EOF
175    
176        exit 1
177    }
178    
179  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
180  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
181  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
182      cpp_options=$1      cpp_options=$1
183      pkg=$2      pkg=$2
184      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
185      RETVAL=$?      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
186      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
187          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
188          exit 99  }
189      fi  
190      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
191      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
192      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
193          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
194          exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
195      fi      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
196      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  }
197    
198    # Search for particular string in a file. Return 1 if detected, 0 if not
199    # usage: test_for_string_in_file file string
200    test_for_string_in_file() {
201        file=$1
202        strng=$2
203        grep "$strng" $file > /dev/null 2>&1
204      RETVAL=$?      RETVAL=$?
205      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
206          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
207            grep -i "$strng" $file
208          exit 99          exit 99
209      fi      fi
210      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
211  }  }
212    
213  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
214  # the package list.  # the package list.
215  expand_pkg_groups() {  expand_pkg_groups() {
216      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
217      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
218          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
219          cat ./p1.tmp | awk '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
220          matched=0          matched=0
221          for i in $PACKAGES ; do          for i in $PACKAGES ; do
222              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
223              RETVAL=$?              RETVAL=$?
224              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
225                  matched=1                  matched=1
226                  replace=`echo $line | awk '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
227                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
228                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
229              else              else
230                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
231              fi              fi
232          done          done
233          PACKAGES=$new_packages          PACKAGES=$new_packages
234          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
235            return $matched
236      else      else
237          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
238      fi      fi
239  }  }
240    
241  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
242  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
243    check_for_broken_Ff()  {
244        #  Do we have defaults for $FS and/or $FS90 ?
245        tfs=f
246        tfs9=f90
247        if test "x$FS" != x ; then
248            tfs="$FS"
249        fi
250        if test "x$FS90" != x ; then
251            tfs9="$FS90"
252        fi
253    
254      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
255      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
256      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        program hello
257      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        write(*,*) 'hi'
258      echo "  The platform appears to be:  $PLATFORM"        stop
259  #     if test "x$OFLIST" = x ; then        end
260  #       echo "  No pre-defined options files were found matching this platform"  EOF
261  #       echo "  but examples for other platforms can be found in:"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
262      RETVAL=$?      RETVAL=$?
263      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
264          LN="ln -s"          if test "x$FS" = x ; then
265                FS='for'
266                FS90='fr9'
267                check_for_broken_Ff
268            else
269                cat <<EOF 2>&1
270    ERROR: Your file system cannot distinguish between *.F and *.f files
271      (fails the "cp" test) and this program cannot find a suitable
272      replacement extension.  Please try a different build environment or
273      contact the <MITgcm-support@mitgcm.org> list for help.
274    
275    EOF
276                exit -1
277            fi
278            return
279        fi
280        rm -f genmake_hello.*
281    
282        #  Check the ability of ${MAKE} and ${LN} to use the current set
283        #  of extensions.
284        cat <<EOF >> genmake_hello.F
285          program hello
286          write(*,*) 'hi'
287          stop
288          end
289    EOF
290        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
291        cat <<EOF >> $MAKEFILE
292    .SUFFIXES:
293    .SUFFIXES: .$tfs .F
294    .F.$tfs:
295            $LN \$< \$@
296    EOF
297        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
298        RETVAL=$?
299        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
300            if test "x$FS" = x ; then
301                FS='for'
302                FS90='fr9'
303                check_for_broken_Ff
304            else
305                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
306                echo "       see simple makefile: '$MAKEFILE' (left here)"
307                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
308                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
309                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
310                echo ""
311                exit -1
312                return
313            fi
314        fi
315        rm -f genmake_hello.* $MAKEFILE
316        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
317    
318        #  If we make it here, use the extensions
319        FS=$tfs
320        FS90=$tfs9
321        return
322    }
323    
324    look_for_makedepend()  {
325    
326        #  The "original" makedepend is part of the Imake system that is
327        #  most often distributed with XFree86 or with an XFree86 source
328        #  package.  As a result, many machines (eg. generic Linux) do not
329        #  have a system-default "makedepend" available.  For those
330        #  systems, we have two fall-back options:
331        #
332        #    1) a makedepend implementation shipped with the cyrus-imapd
333        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
334        #    2) a local tools/xmakedepend shell script
335        #
336        #  So the choices are, in order:
337        #    1) use the user-specified program
338        #    2) use the local xmakedepend script (get all dependencies, but slower)
339        #    3) use a system-wide default
340        #    4) locally build and use the cyrus makedepend
341        #             (faster, but can miss some dependencies)
342        #
343        echo >> $LOGFILE
344        echo "running: look_for_makedepend()" >> $LOGFILE
345        if test "x${MAKEDEPEND}" != x ; then
346            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
347            RETVAL=$?
348            if test x"$RETVAL" = x0 ; then
349                build_cyrus_makedepend
350                RETVAL=$?
351                if test "x$RETVAL" != x0 ; then
352                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
353                    MAKEDEPEND=
354                fi
355            else
356                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
357                RETVAL=$?
358                if test "x$RETVAL" = x0 ; then
359                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
360                fi
361                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
362            fi
363        fi
364        if test "x${MAKEDEPEND}" = x ; then
365            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
366            #  echo 'MAKEFILE="'$MAKEFILE'"'
367            cat <<EOF >> $MAKEFILE
368    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
369    #
370    #   Some "makedepend" implementations will die if they cannot
371    #   find a Makefile -- so this file is here to gives them an
372    #   empty one to find and parse.
373    EOF
374            cat <<EOF >> genmake_tc.f
375          program test
376          write(*,*) 'test'
377          stop
378          end
379    EOF
380            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
381            RV1=$?
382            which makedepend > /dev/null 2>&1
383            RV2=$?
384            if test "x${RV2}" = x0 ; then
385                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
386                RV3=$? ; loc_msg='not working.'
387            else RV3=$RV2 ; loc_msg='not found.'
388            fi
389            test -f $MAKEFILE  &&  rm -f $MAKEFILE
390            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
391            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
392            if test "x${RV1}" = x0 ; then
393                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
394                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
395            elif test "x${RV3}" = x0 ; then
396                echo "    local tools/xmakedepend not working. Use system-default makedepend"
397                MAKEDEPEND=makedepend
398                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
399            else
400                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
401                echo -n "    Try to build cyrus-makedepend ..."
402                #  Try to build the cyrus implementation
403                build_cyrus_makedepend
404                RETVAL=$?
405                if test "x$RETVAL" = x0 ; then
406                    echo "  Works"
407                else
408                    echo "  Fails" ; echo "" >> $LOGFILE
409                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
410                    echo ""
411                    exit -1
412                    return
413                fi
414            fi
415        fi
416    }
417    
418    build_cyrus_makedepend()  {
419        echo >> $LOGFILE
420        echo "running: build_cyrus_makedepend()" >> $LOGFILE
421        rm -f ./genmake_cy_md
422        (
423            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
424                &&  ./configure > /dev/null 2>&1  \
425                &&  $MAKE > /dev/null 2>&1
426            if test -x ./makedepend.exe ; then
427                $LN ./makedepend.exe ./makedepend
428            fi
429            ./makedepend ifparser.c > /dev/null 2>&1  \
430                &&  echo "true"
431        ) > ./genmake_cy_md
432        grep true ./genmake_cy_md > /dev/null 2>&1
433        RETVAL=$?
434        rm -f ./genmake_cy_md
435        if test "x$RETVAL" = x0 ; then
436            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
437            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
438            return 0
439      else      else
440          echo "Error: \"ln -s\" does not appear to work on this system!"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
441          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          return 1
         exit 1  
442      fi      fi
443      rm -f test link  }
444    
445      if test "x$CPP" = x ; then  build_embed_encode()
446          CPP="cpp -traditional -P"  {
447        printf "  building the embed-encode utility...  "
448        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
449            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
450                echo
451                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
452                echo
453                EMBED_SRC=f
454                return 1
455            fi
456            clist="cc gcc c89 $CC"
457            for ic in $clist ; do
458                comm="$ic -o encode_files encode_files.c"
459                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
460                RETVAL=$?
461                if test "x$RETVAL" = x0 ; then
462                    echo "OK"
463                    return 0
464                fi
465            done
466            echo
467            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
468            echo "      so it has been disabled"
469            echo
470            EMBED_SRC=f
471            return 1
472      fi      fi
473        echo "OK"
474    }
475    
476      # look for possible fortran compilers  #  look for possible C compilers
477      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  look_for_C_compilers() {
478      p_FC=      echo >> $LOGFILE
479        echo "running: look_for_C_compilers()" >> $LOGFILE
480        rm -f ./genmake_hello.c  ./genmake_hello
481        cat >> genmake_hello.c << EOF
482    #include <stdio.h>
483    int main(int argc, char **argv) {
484      printf("Hello!\n");
485      return 0;
486    }
487    EOF
488        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
489        p_CC=
490      for c in $tmp ; do      for c in $tmp ; do
491          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
492          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
493            $COMM >> $LOGFILE 2>&1
494            RETVAL=$?
495            if test "x${RETVAL}" = x0 ; then
496                echo " $c test successful" >> $LOGFILE
497                p_CC="$p_CC $c"
498            fi
499        done
500        rm -f ./genmake_hello.c ./genmake_hello
501        if test "x${p_CC}" = x ; then
502            cat 1>&2 <<EOF
503    
504    Error: No C compilers were found in your path.  Please specify one using:
505    
506        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
507        2) the CC or MITGCM_CC environment variables.
508    
509    EOF
510            exit 1
511        else
512            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
513            if test "x$CC" = x ; then
514                CC=`echo $p_CC | $AWK '{print $1}'`
515                echo "  Setting C compiler to: "$CC
516            fi
517        fi
518        echo " --> set CC='$CC'" >> $LOGFILE
519    }
520    
521    # Guess possible config options for this host
522    find_possible_optfile()  {
523    
524        echo >> $LOGFILE
525        echo "running: find_possible_optfile()" >> $LOGFILE
526        tmp1=`uname`"_"`uname -m`
527        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
528        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
529        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
530        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
531        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
532        PLATFORM=$tmp3
533        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
534        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
535        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
536    
537        #================================================================
538        #  look for possible FORTRAN compilers
539        echo "  look for possible FORTRAN compilers" >> $LOGFILE
540        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
541        p_FC=
542        rm -f ./genmake_hello.f
543        cat >> genmake_hello.f <<EOF
544        program hello        program hello
545        do i=1,3        do i=1,3
546          print *, 'hello world : ', i          print *, 'hello world : ', i
547        enddo        enddo
548        end        end
549  EOF  EOF
550          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
551            COMM="$f -o genmake_hello genmake_hello.f"
552            echo $COMM >> $LOGFILE
553            $COMM >> $LOGFILE 2>&1
554          RETVAL=$?          RETVAL=$?
555          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
556              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
557                p_FC="$p_FC $f"
558          fi          fi
559      done      done
560        rm -f ./genmake_hello.f ./genmake_hello
561      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
562          cat 1>&2 <<EOF          cat 1>&2 <<EOF
563    
# Line 128  Error: No Fortran compilers were found i Line 565  Error: No Fortran compilers were found i
565    
566      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
567      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
568      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
569    
570  EOF  EOF
571          exit 1          exit 1
572      else      else
573          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | awk '{print $1}'`  
         fi  
574      fi      fi
575    
576      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
577          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
578          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
579              OPTFILE=$p_OF          for i in $p_FC ; do
580              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
581              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
582              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
583                    break
584                fi
585            done
586        fi
587    
588        if test "x$OPTFILE" = x ; then
589            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
590            if test ! -r $OPTFILE ; then
591                 echo "  I looked for the file "$OPTFILE" but did not find it"
592          fi          fi
593      done      fi
594    
595      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
596          cat 1>&2 <<EOF          cat 1>&2 <<EOF
597    
# Line 164  Error: No options file was found in:  $R Line 607  Error: No options file was found in:  $R
607  EOF  EOF
608          exit 1          exit 1
609      fi      fi
610        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
611    
612    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
613    #  checking for additional included headers (in case of chain of included header)
614    mpi_headers_do_local_copy() {
615    
616        dBug=0
617        rm -rf ./mpi_headers
618        if test -d $MPIINCLUDEDIR ; then
619    
620            #----- check for additional headers (chain of included headers)
621            echo -n '  Check MPI headers ... '
622            listIni=$MPI_HEADER_FILES
623            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
624            outp=$?
625            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
626            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
627            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
628    
629            doCheck=1 ; list2copy='' ; list2check=$listIni
630            while test $doCheck = 1 ; do
631              newList=''
632              for i in $list2check ; do
633                if test -f $MPIINCLUDEDIR/$i ; then
634                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
635                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
636                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
637                  for j in $newInc ; do
638                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
639                    outp=$?
640                    if test $outp != 0 ; then
641                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
642                      newList="$newList $j"
643                    fi
644                  done
645                  if test $dBug = 1 ; then echo "" ; fi
646                fi
647              done
648              if test "x$newList" = x ; then doCheck=0
649              else list2check=$newList ; list2copy="$list2copy $newList"
650              fi
651            done
652            list2copy="$MPI_HEADER_FILES $list2copy"
653            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
654    
655            #----- create local mpi_headers dir if we have files to copy
656            mkListInc=`echo $list2copy | wc -w`
657            if test $mkListInc != 0 ; then
658              echo 'create local "./mpi_headers" dir'
659              mkdir -p ./mpi_headers
660              INCLUDES="-I./mpi_headers $INCLUDES"
661              mkListInc=1
662            fi
663            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
664    
665            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
666            for i in $list2copy ; do
667              if test -f $MPIINCLUDEDIR/$i ; then
668                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
669                if test $i = 'mpif.h' ; then
670                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
671                fi
672                if test $mkListInc = 2 ; then
673                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
674                fi
675                if test $mkListInc = 1 ; then
676                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
677                fi
678              fi
679            done
680        else
681            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
682            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
683    #       exit -1
684        fi
685  }  }
686    
687  #  Parse the package dependency information  #  Parse the package dependency information
# Line 202  get_pdepend_list()  { Line 690  get_pdepend_list()  {
690      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
691      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
692      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
693          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
694          > ./.pd_tmp          > ./.pd_tmp
695      source ./.pd_tmp      RETVAL=$?
696        if test ! "x${RETVAL}" = x0 ; then
697          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
698          exit 1
699        fi
700        #echo "---- content of tmp file '.pd_tmp' :" ; cat .pd_tmp ; echo "---- end of file"
701        . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
703    }
704    
705    #  Build a CPP macro to automate calling C routines from FORTRAN
706    get_fortran_c_namemangling()  {
707    
708        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709        if test ! "x$FC_NAMEMANGLE" = x ; then
710            return 0
711        fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714        default_nm="#define FC_NAMEMANGLE(X) X ## _"
715    
716        cat > genmake_test.c <<EOF
717    void tcall( char * string ) { tsub( string ); }
718    EOF
719        COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722        RETVAL=$?
723        if test "x$RETVAL" != x0 ; then
724            FC_NAMEMANGLE=$default_nm
725            cat <<EOF>> $LOGFILE
726    
727     WARNING: C test compile fails
728     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730    EOF
731            return 1
732        fi
733        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
734        RETVAL=$?
735        if test "x$RETVAL" != x0 ; then
736            FC_NAMEMANGLE=$default_nm
737            cat <<EOF>> $LOGFILE
738    
739     WARNING: The "nm" command failed.
740     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742    EOF
743            return 1
744        fi
745        cat > genmake_tcomp.$FS <<EOF
746          subroutine tcall( string )
747          character*(*) string
748          call tsub( string )
749          end
750    EOF
751        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754        RETVAL=$?
755        if test "x$RETVAL" != x0 ; then
756            FC_NAMEMANGLE=$default_nm
757            cat <<EOF>> $LOGFILE
758    
759     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762    EOF
763            return 1
764        fi
765        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
766        RETVAL=$?
767        if test "x$RETVAL" != x0 ; then
768            FC_NAMEMANGLE=$default_nm
769            cat <<EOF>> $LOGFILE
770    
771     WARNING: The "nm" command failed.
772     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774    EOF
775            return 1
776        fi
777    
778        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
779        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
780        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
781        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
782    
783        nmangle="X"
784        if test "x$c_a" != "x$f_a" ; then
785            comm="echo x$f_a | sed -e 's|x$c_a||'"
786            a=`eval $comm`
787            nmangle="$a ## $nmangle"
788        fi
789        if test "x$c_b" != "x$f_b" ; then
790            comm="echo x$f_b | sed -e 's|x$c_b||'"
791            b=`eval $comm`
792            nmangle="$nmangle ## $b"
793        fi
794    
795        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
796    
797        #  cleanup the testing files
798        rm -f genmake_tcomp.* genmake_test.*
799    
800      echo -n "PNAME = "${}      echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801  }  }
802    
803    check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806        get_fortran_c_namemangling
807        cat <<EOF > genmake_tc_1.c
808    $FC_NAMEMANGLE
809    #include <stdio.h>
810    #include <stdlib.h>
811    #include <unistd.h>
812    #include <assert.h>
813    #include <sys/time.h>
814    void FC_NAMEMANGLE(cloc) ( double *curtim )
815    {
816     struct timeval tv1;
817     gettimeofday(&tv1 , (void *)NULL );
818     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
819     *curtim = *curtim/1.E6;
820    }
821    EOF
822        COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> $LOGFILE
824        $COMM >> $LOGFILE 2>&1
825        RET_C=$?
826        cat <<EOF > genmake_tc_2.$FS
827          program hello
828          REAL*8 wtime
829          external cloc
830          call cloc(wtime)
831          print *," HELLO WORLD", wtime
832          end
833    EOF
834        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> $LOGFILE
836        $COMM >> $LOGFILE 2>&1
837        RET_F=$?
838        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839        RETVAL=$?
840        if test "x$RETVAL" = x0 ; then
841            HAVE_CLOC=t
842        fi
843        rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845    }
846    
847  #  Explain usage  check_HAVE_SIGREG()  {
848  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
849      echo          return
850      echo "Usage: "$0" [OPTIONS]"      fi
851      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
852      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
854      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
855      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
856      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
857      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
858      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
859      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
860      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
861      echo "    -make NAME | -m NAME"  
862      echo "      --make=NAME | -m=NAME"  int * ip;
863      echo "    -makefile NAME | -mf NAME"  
864      echo "      --makefile=NAME | -mf=NAME"  static void killhandler(
865      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
866      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  {
867      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      *ip = *ip + 1;
868      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      return;
869      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  }
870      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
871      echo "    -disable NAME | --disable NAME"  void FC_NAMEMANGLE(sigreg) (int * aip)
872      echo "      -disable=NAME | --disable=NAME"  {
873      echo "    -enable NAME | --enable NAME"      struct sigaction s;
874      echo "      -enable=NAME | --enable=NAME"      ip = aip;
875      echo "    -standarddirs NAME | --standarddirs NAME"      s.sa_flags = SA_SIGINFO;
876      echo "      -standarddirs=NAME | --standarddirs=NAME"      s.sa_sigaction = (void *)killhandler;
877      echo "    -noopt NAME | --noopt NAME"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
878      echo "      -noopt=NAME | --noopt=NAME"          printf("Sigaction returned error = %d\n", errno);
879  #    echo "    -cpp NAME | --cpp NAME"          exit(0);
880  #    echo "      -cpp=NAME | --cpp=NAME"      }
881      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      return;
882      echo "      -fc=NAME | --fc=NAME"  }
883      echo "    -[no]ieee | --[no]ieee"  EOF
884      echo "    -[no]mpi | --[no]mpi"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
885      echo "    -[no]jam | --[no]jam"      echo $COMM >> $LOGFILE
886      echo      $COMM >> $LOGFILE 2>&1
887      echo "  and NAME is a string such as:"      RET_C=$?
888      echo      cat <<EOF > genmake_tc_2.$FS
889      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        program hello
890      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        integer anint
891      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        common /iv/ anint
892      echo        external sigreg
893      echo "  which, depending upon your shell, may need to be single-quoted"        call sigreg(anint)
894      echo "  if it contains spaces, dashes, or other special characters."        end
895      exit 1  EOF
896        cat genmake_tc_2.$FS >> $LOGFILE
897        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898        echo $COMM >> $LOGFILE
899        $COMM >> $LOGFILE 2>&1
900        RETVAL=$?
901        if test "x$RETVAL" = x0 ; then
902            HAVE_SIGREG=t
903        fi
904        rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906    }
907    
908    check_HAVE_SETRLSTK()  {
909        if test ! "x$HAVE_SETRLSTK" = x ; then
910            return
911        fi
912        echo >> $LOGFILE
913        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914        get_fortran_c_namemangling
915        cat <<EOF > genmake_tc_1.c
916    $FC_NAMEMANGLE
917    #include <sys/time.h>
918    #include <sys/resource.h>
919    #include <unistd.h>
920    void FC_NAMEMANGLE(setrlstk) ()
921    {
922        struct rlimit rls;
923        rls.rlim_cur = RLIM_INFINITY;
924        rls.rlim_max = RLIM_INFINITY;
925        setrlimit(RLIMIT_STACK, &rls);
926        return;
927    }
928    EOF
929        COMM="$CC $CFLAGS -c genmake_tc_1.c"
930        echo $COMM >> $LOGFILE
931        $COMM >> $LOGFILE 2>&1
932        RET_C=$?
933        cat <<EOF > genmake_tc_2.$FS
934          program hello
935          external setrlstk
936          call setrlstk()
937          end
938    EOF
939        cat genmake_tc_2.$FS >> $LOGFILE
940        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941        echo $COMM >> $LOGFILE
942        $COMM >> $LOGFILE 2>&1
943        RETVAL=$?
944        if test "x$RETVAL" = x0 ; then
945            HAVE_SETRLSTK=t
946        fi
947        rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949    }
950    
951    check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954        get_fortran_c_namemangling
955        cat <<EOF > genmake_tc_1.c
956    $FC_NAMEMANGLE
957    #include <stdio.h>
958    #include <stdlib.h>
959    #include <unistd.h>
960    #include <sys/stat.h>
961    #include <sys/types.h>
962    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
963    {
964        char name[512];
965        struct stat astat;
966    
967        name[0] = 'a'; name[1] = '\0';
968        if (! stat(name, &astat))
969            *nbyte = (int)(astat.st_size);
970        else
971            *nbyte = -1;
972    }
973    EOF
974        COMM="$CC $CFLAGS -c genmake_tc_1.c"
975        echo $COMM >> $LOGFILE
976        $COMM >> genmake_tc.log 2>&1
977        RET_C=$?
978        cat <<EOF > genmake_tc_2.$FS
979          program hello
980          integer nbyte
981          call tfsize(nbyte)
982          print *," HELLO WORLD", nbyte
983          end
984    EOF
985        cat genmake_tc_2.$FS >> $LOGFILE
986        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987        echo $COMM >> $LOGFILE
988        $COMM >> genmake_tc.log 2>&1
989        RETVAL=$?
990        if test "x$RETVAL" = x0 ; then
991            HAVE_STAT=t
992        fi
993        rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995    }
996    
997    check_netcdf_libs()  {
998        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999            return
1000        fi
1001        echo >> $LOGFILE
1002        echo "running: check_netcdf_libs()" >> $LOGFILE
1003        cat <<EOF > genmake_tnc.F
1004          program fgennc
1005    #include "netcdf.inc"
1006    EOF
1007       #if test ! "x$MPI" = x ; then
1008       #    echo '#include "mpif.h"' >> genmake_tnc.F
1009       #fi
1010        cat <<EOF >> genmake_tnc.F
1011          integer iret, ncid, xid
1012          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1013          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014          iret = nf_def_dim(ncid, 'X', 11, xid)
1015          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1016          iret = nf_close(ncid)
1017          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018          end
1019    EOF
1020        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021        cat genmake_tnc.F >> genmake_tnc.log
1022        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023        RET_CPP=f
1024        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025        echo "$COMM" >> genmake_tnc.log
1026        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1027        if test "x$RET_CPP" = xf ; then
1028            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1029                >> genmake_tnc.log
1030            echo "    Please check that \$INCLUDES is properly set." \
1031                >> genmake_tnc.log
1032        fi
1033        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1034        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1035        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037        RET_COMPILE=$?
1038        cat genmake_tnc.log >> $LOGFILE
1039    
1040        #EH3  Remove test program execution for machines that either disallow
1041        #EH3  execution or cannot support it (eg. cross-compilers)
1042        #EH3
1043        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1044        #EH3 RETVAL=$?
1045        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1046    
1047        if test "x$RET_COMPILE" = x0 ; then
1048            HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050        else
1051            # try again with "-lnetcdf" added to the libs
1052            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1056            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1057                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059            RET_COMPILE=$?
1060            echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062            if test "x$RET_COMPILE" = x0 ; then
1063                LIBS="$LIBS -lnetcdf"
1064                HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066            else
1067            # try again with "-lnetcdff" added to the libs
1068                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1072                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1073                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075                RET_COMPILE=$?
1076                echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078                if test "x$RET_COMPILE" = x0 ; then
1079                    LIBS="$LIBS -lnetcdff -lnetcdf"
1080                    HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082                fi
1083            fi
1084        fi
1085        rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087    }
1088    
1089    check_lapack_libs()  {
1090        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091        echo >> $LOGFILE
1092        echo "running: check_lapack_libs()" >> $LOGFILE
1093        cat <<EOF > genmake_tla.F
1094          program fgenla
1095          integer info
1096          integer ipiv( 2 )
1097          double precision ab( 4, 2 ), b( 2 )
1098          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099          data b / 1., 1. /
1100          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101          IF (info .NE. 0) write(*,*) 'Error:', info
1102          write(*,*) b
1103          end
1104    EOF
1105        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106        cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188    }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228  }  }
1229    
1230  #eh3 # This is the generic configuration.  ###############################################################################
1231  #eh3 set LN         = ( 'ln -s' )  #   Sequential part of script starts here
1232  #eh3 set CPP        = ( '/lib/cpp -P' )  ###############################################################################
 #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  
 #eh3 set KPP        = (  )  
 #eh3 set FC         = ( 'f77' )  
 #eh3 set LINK       = $FC  
 #eh3 set MAKEDEPEND = ( 'makedepend' )  
 #eh3 set INCLUDES   = ( -I. )  
 #eh3 set FFLAGS     = (  )  
 #eh3 set FOPTIM     = (  )  
 #eh3 set CFLAGS     = (  )  
 #eh3 set KFLAGS1    = (  )  
 #eh3 set KFLAGS2    = (  )  
 #eh3 set LIBS       = (  )  
 #eh3 set KPPFILES   = (  )  
 #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  
 #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )  
1233    
1234  #  Set defaults here  #  Set defaults here
1235  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 288  PLATFORM= Line 1238  PLATFORM=
1238  LN=  LN=
1239  S64=  S64=
1240  KPP=  KPP=
1241  FC=  #FC=
1242    #CC=gcc
1243    #CPP=
1244  LINK=  LINK=
1245  DEFINES="-DWORDLENGTH=4"  DEFINES=
1246  PACKAGES=  PACKAGES=
1247  ENABLE=  ENABLE=
1248  DISABLE=  DISABLE=
1249  MAKEFILE=  # MAKEFILE=
1250  MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  DUMPSTATE=t  PKG_GROUPS=
1253  PDEFAULT=  DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258    FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
1265    #LDADD=
1266  LIBS=  LIBS=
1267  KPPFILES=  KPPFILES=
1268  NOOPTFILES=  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270    MPI=
1271    MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275    TS=
1276    PAPIS=
1277    PCLS=
1278    FOOLAD=
1279    PAPI=
1280    PCL=
1281    HPMT=
1282    GSL=
1283    DEVEL=
1284    HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289    # DEFINES checked by test compilation or command-line
1290    HAVE_SYSTEM=
1291    HAVE_FDATE=
1292    FC_NAMEMANGLE=
1293    HAVE_CLOC=
1294    # HAVE_SETRLSTK=
1295    HAVE_STAT=
1296    HAVE_NETCDF=
1297    HAVE_ETIME=
1298    IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
1304  SOURCEDIRS=  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311    G2ARGS=
1312    BASH=
1313  PWD=`pwd`  PWD=`pwd`
1314  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1315  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1316    EMBED_SRC=
1317    THISHOST=`hostname`
1318  THISCWD=`pwd`  THISCWD=`pwd`
1319  THISDATE=`date`  THISDATE=`date`
1320    THISUSER=`echo $USER`
1321    THISVER=
1322  MACHINE=`uname -a`  MACHINE=`uname -a`
1323  EXECUTABLE=  EXECUTABLE=
1324  EXEHOOK=  EXEHOOK=
1325  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1326  IEEE=  IEEE=
1327  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1328      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1329  fi  fi
1330    FS=
1331    FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337    TAF=
1338    AD_TAF_FLAGS=
1339    FTL_TAF_FLAGS=
1340    SVD_TAF_FLAGS=
1341    TAF_EXTRA=
1342    TAMC=
1343    AD_TAMC_FLAGS=
1344    FTL_TAF_FLAGS=
1345    SVD_TAMC_FLAGS=
1346    TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1354  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1359  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF DIFF_FLAGS AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s9=""  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373    cat <<EOF
1374    
1375    GENMAKE :
1376    
1377    A program for GENerating MAKEfiles for the MITgcm project.
1378       For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380       http://mitgcm.org/public/docs.html
1381    
1382    EOF
1383    
1384    LOGFILE="genmake.log"
1385    #- clean-up previous genmake logfiles:
1386    rm -f genmake_state genmake_*optfile $LOGFILE
1387    
 echo  
1388  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1389    
1390  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1391  #parse_options  #parse_options
1392  ac_prev=  ac_prev=
1393  for ac_option ; do  for ac_option in "$@" ; do
1394    
1395        G2ARGS="$G2ARGS \"$ac_option\""
1396    
1397      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1398      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 392  for ac_option ; do Line 1400  for ac_option ; do
1400          ac_prev=          ac_prev=
1401          continue          continue
1402      fi      fi
1403        
1404      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405        
1406      case $ac_option in      case $ac_option in
1407            
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410            
         -nooptfile | --nooptfile)  
             OPTFILE="NONE" ;;  
1411          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1412              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1413          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1414              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1415            
1416          -adoptfile | --adoptfile | -ad | --ad)          -oad | --oad)
1417                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1418            -nocat4ad | -dog4ad | -ncad | -dad)
1419                CAT_SRC_FOR_TAF=0 ;;
1420            -adoptfile | --adoptfile | -adof | --adof)
1421              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1422          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1423              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1424            
1425          -pdepend | --pdepend)          -pdepend | --pdepend)
1426              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1427          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1428              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1429            
1430          -pdefault | --pdefault)          -pgroups | --pgroups)
1431              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1432          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1433              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1434            
1435          -make | --make | -m | --m)          -make | --make | -m | --m)
1436              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1437          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1438              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1439            
1440          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1441                ac_prev=BASH ;;
1442            -bash=* | --bash=*)
1443                BASH=$ac_optarg ;;
1444    
1445            -makedepend | --makedepend | -md | --md)
1446                ac_prev=MAKEDEPEND ;;
1447            -makedepend=* | --makedepend=* | -md=* | --md=*)
1448                MAKEDEPEND=$ac_optarg ;;
1449    
1450            -makefile | --makefile | -mf | --mf)
1451              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1452          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1453              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1454            
1455          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1456              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1457          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1458              PLATFORM=$ac_optarg ;;              echo
1459                        usage
1460                ;;
1461    
1462          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1463              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1464          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1465              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1466            
1467          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1468              ac_prev=MODS ;;              ac_prev=MODS ;;
1469          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1470              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1471            
1472          -disable | --disable)          -disable | --disable)
1473              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1474          -disable=* | --disable=*)          -disable=* | --disable=*)
1475              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1476            
1477          -enable | --enable)          -enable | --enable)
1478              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1479          -enable=* | --enable=*)          -enable=* | --enable=*)
1480              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1481            
1482          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1483              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1484          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1485              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1486    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1487  #           -cpp | --cpp)  #           -cpp | --cpp)
1488  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1489  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1490  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1491                
1492            -cc | --cc)
1493                ac_prev=CC ;;
1494            -cc=* | --cc=*)
1495                CC=$ac_optarg ;;
1496    
1497          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1498              ac_prev=FC ;;              ac_prev=FC ;;
1499          -fc=* | --fc=*)          -fc=* | --fc=*)
1500              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1501            
1502            -fs | --fs)
1503                ac_prev=FS ;;
1504            -fs=* | --fs=*)
1505                FS=$ac_optarg ;;
1506    
1507            -fs90 | --fs90)
1508                ac_prev=FS90 ;;
1509            -fs90=* | --fs90=*)
1510                FS90=$ac_optarg ;;
1511    
1512            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1513                USE_R4=true ;;
1514    
1515          -ieee | --ieee)          -ieee | --ieee)
1516              IEEE=true ;;              IEEE=true ;;
1517          -noieee | --noieee)          -noieee | --noieee)
1518              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1519                    -devel | --devel)
1520                IEEE=true ; DEVEL=true ;;
1521            -gsl | --gsl)
1522                GSL=true ;;
1523    
1524            -ts | --ts)
1525                TS=true ;;
1526            -papis | --papis)
1527                PAPIS=true ;;
1528            -pcls | --pcls)
1529                PCLS=true ;;
1530            -foolad | --foolad)
1531                FOOLAD=true ;;
1532            -papi | --papi)
1533                PAPI=true ;;
1534            -pcl | --pcl)
1535                PCL=true ;;
1536            -hpmt | --hpmt)
1537                HPMT=true ;;
1538    
1539          -mpi | --mpi)          -mpi | --mpi)
1540              MPI=true ;;              MPI=true ;;
1541          -nompi | --nompi)          -mpi=* | --mpi=*)
1542              MPI= ;;              MPIPATH=$ac_optarg
1543                        MPI=true ;;
1544          -jam | --jam)  
1545              JAM=1 ;;          -omp | --omp)
1546          -nojam | --nojam)              OMP=true ;;
1547              JAM=0 ;;          -omp=* | --omp=*)
1548                        OMPFLAG=$ac_optarg
1549                OMP=true ;;
1550    
1551          -ds | --ds)          -ds | --ds)
1552              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1553            
1554            -extra_flag | --extra_flag)
1555                ac_prev=FEXTRAFLAGS ;;
1556            -extra_flag=* | --extra_flag=*)
1557                FEXTRAFLAGS=$ac_optarg ;;
1558    
1559            -taf_extra | --taf_extra)
1560                ac_prev=TAF_EXTRA ;;
1561            -taf_extra=* | --taf_extra=*)
1562                TAF_EXTRA=$ac_optarg ;;
1563    
1564            -tamc_extra | --tamc_extra)
1565                ac_prev=TAMC_EXTRA ;;
1566            -tamc_extra=* | --tamc_extra=*)
1567                TAMC_EXTRA=$ac_optarg ;;
1568    
1569            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1570                IGNORE_TIME="-DIGNORE_TIME" ;;
1571    
1572            -es | --es | -embed-source | --embed-source)
1573                EMBED_SRC=t ;;
1574    
1575          -*)          -*)
1576              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1577              usage              usage
1578              ;;              ;;
1579            
1580          *)          *)
1581              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1582              usage              usage
1583              ;;              ;;
1584            
1585      esac      esac
1586        
1587  done  done
1588    
1589    #TMP=./genmk_$$
1590    #- try to put temporary files in system-local /tmp dir
1591    TMP=/tmp/genmk_${USER}_$$
1592    touch $TMP ; retVal=$?
1593    if [ $retVal -eq 0 ] ; then
1594      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1595    else
1596      TMP=./genmk_$$
1597    fi
1598    rm -f $TMP
1599    #echo "  temp files: $TMP.*"
1600    
1601    printf "  getting local config information:  "
1602    if test -f $gm_local ; then
1603        echo "using $gm_local"
1604        . $gm_local
1605    else
1606        echo "none found"
1607    fi
1608    
1609  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1610      echo      echo
1611      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1612      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1613      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1614      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1615        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1616        echo "WARNING: ignore \"./.genmakerc\" and continue."
1617      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1618  fi  fi
1619    
1620    #  Find the MITgcm ${ROOTDIR}
1621  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1622      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1623        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1624          ROOTDIR=".."          ROOTDIR=".."
1625      else      else
1626          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1627              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1628                  ROOTDIR=$d                  ROOTDIR=$d
1629                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1630                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1631                  break                  break
1632              fi              fi
1633          done          done
# Line 546  if test ! -d ${ROOTDIR} ; then Line 1644  if test ! -d ${ROOTDIR} ; then
1644      exit 1      exit 1
1645  fi  fi
1646    
1647  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1648    version_file="${ROOTDIR}/doc/tag-index"
1649    if test -f $version_file ; then
1650        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1651    #-  remove ./BUILD_INFO.h file if older than version_file
1652        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1653            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1654            rm -f ./BUILD_INFO.h
1655        fi
1656    fi
1657    
1658    if test "x$MAKEFILE" = x ; then
1659        MAKEFILE="Makefile"
1660    fi
1661    
1662    echo "  getting OPTFILE information:"
1663  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1664      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1665          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1666          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1667          find_possible_configs          find_possible_optfile
1668      else      else
1669          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1670      fi      fi
# Line 559  fi Line 1672  fi
1672  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1673      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1674          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1675          source "$OPTFILE"          . "$OPTFILE"
1676          RETVAL=$?          RETVAL=$?
1677          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1678              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1679              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1680              exit 1              exit 1
1681          fi          fi
1682          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1683              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1684          fi          fi
1685      else      else
# Line 575  if test "x$OPTFILE" != xNONE ; then Line 1688  if test "x$OPTFILE" != xNONE ; then
1688      fi      fi
1689  fi  fi
1690    
1691  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1692  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1693      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1694            AD_OPTFILE=$MITGCM_AD_OF
1695        elif test "x$OPENAD" = x ; then
1696          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1697      else      else
1698          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1699      fi      fi
1700  fi  fi
1701  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1702      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1703          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1704          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1705          RETVAL=$?          RETVAL=$?
1706          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1707              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1708              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1709              exit 1              exit 1
1710          fi          fi
1711          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1712              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1713          fi          fi
1714      else      else
# Line 602  if test "x${AD_OPTFILE}" != xNONE ; then Line 1717  if test "x${AD_OPTFILE}" != xNONE ; then
1717      fi      fi
1718  fi  fi
1719    
1720  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1721  #  and abort!  # Initialize INCLUDEDIRSMK from and optfile INCLUDEDIRS
1722    if test "x${INCLUDEDIRS}" != "x" ; then
1723     INCLUDEDIRSMK=${INCLUDEDIRS}
1724    fi
1725    
1726    #====================================================================
1727    #  Set default values if not set by the optfile
1728    #
1729    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1730    #  either set defaults or complain and abort!
1731    if test ! "x$BASH" = x ; then
1732        # add a trailing space so that it works within the Makefile syntax (see below)
1733        BASH="$BASH "
1734    fi
1735  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1736      cat <<EOF 1>&2      cat <<EOF 1>&2
1737    
# Line 614  Error: no Fortran compiler: please speci Line 1742  Error: no Fortran compiler: please speci
1742  EOF  EOF
1743      exit 1      exit 1
1744  fi  fi
1745    if test "x$GET_FC_VERSION" != x ; then
1746      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1747      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1748      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1749      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1750      if test -s genmake_fc_vers1 ; then
1751        cat genmake_fc_vers1 >> $LOGFILE
1752      else
1753        cat genmake_fc_vers2 >> $LOGFILE
1754      fi
1755      echo "<-- compiler version ----" >> $LOGFILE
1756      rm -f genmake_fc_vers1 genmake_fc_vers2
1757    fi
1758    
1759    if test "x$CC" = x ; then
1760        look_for_C_compilers
1761    fi
1762    
1763  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1764      LINK=$FC      LINK=$FC
1765  fi  fi
1766    if test "x$MAKE" = x ; then
1767        MAKE="make"
1768    fi
1769  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1770      CPP="cpp"      CPP="cpp -traditional -P"
1771  fi  fi
1772    #EH3 === UGLY ===
1773    #  The following is an ugly little hack to check for $CPP in /lib/ and
1774    #  it should eventually be replaced with a more general function that
1775    #  searches a combo of the user's path and a list of "usual suspects"
1776    #  to find the correct location for binaries such as $CPP.
1777    for i in " " "/lib/" ; do
1778        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1779    done
1780    #EH3 === UGLY ===
1781  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1782  RETVAL=$?  RETVAL=$?
1783  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 629  Error: C pre-processor "$CPP" failed the Line 1787  Error: C pre-processor "$CPP" failed the
1787    
1788    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1789    2) the "./genmake_local" file    2) the "./genmake_local" file
1790      3) with the CPP environment variable
1791    
1792  EOF  EOF
1793      exit 1      exit 1
1794  else  else
1795      rm -f test_cpp      rm -f test_cpp
1796  fi  fi
1797  if test "x$MAKEDEPEND" = x ; then  
1798      MAKEDEPEND=makedepend  look_for_makedepend
1799    
1800    #  Check that soft-link command is set and usable
1801    if test "x$LN" = x ; then
1802        LN="ln -s"
1803    fi
1804    echo "test" > genmake_test_ln
1805    $LN genmake_test_ln genmake_tlink
1806    RETVAL=$?
1807    if test "x$RETVAL" != x0 ; then
1808        cat <<EOF 1>&2
1809    
1810    Error: The command "$LN" failed -- please specify a working soft-link
1811      command in the optfile.
1812    
1813    EOF
1814        exit 1
1815    fi
1816    test -L genmake_tlink > /dev/null 2>&1
1817    RETVAL=$?
1818    if test "x$RETVAL" = x0 ; then
1819        HAVE_TEST_L=t
1820    fi
1821    rm -f genmake_test_ln genmake_tlink
1822    
1823    #  Check for broken *.F/*.f handling and fix if possible
1824    check_for_broken_Ff
1825    
1826    if test ! "x$MPI" = x ; then
1827          echo "  Turning on MPI cpp macros"
1828          DEFINES="$DEFINES -DALLOW_USE_MPI"
1829    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1830    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1831    fi
1832    if test ! "x$OMP" = x ; then
1833          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1834          FFLAGS="$FFLAGS $OMPFLAG"
1835          F90FLAGS="$F90FLAGS $OMPFLAG"
1836          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1837    fi
1838    
1839    if test ! "x$USE_R4" = x ; then
1840          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1841          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1842    fi
1843    
1844    if test ! "x$TS" = x ; then
1845          echo "  Turning on timing per timestep"
1846          if test ! "x$FOOLAD" = x ; then
1847                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1848          else
1849                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1850          fi
1851          PACKAGES="$PACKAGES showflops"
1852    fi
1853    if test ! "x$PAPIS" = x ; then
1854          echo "  Turning on PAPI flop summary per timestep"
1855          echo "  Please make sure PAPIINC, PAPILIB are defined"
1856          if test ! "x$FOOLAD" = x ; then
1857                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1858          else
1859                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1860          fi
1861          INCLUDES="$INCLUDES $PAPIINC"
1862          LIBS="$LIBS $PAPILIB"
1863          PACKAGES="$PACKAGES showflops"
1864    fi
1865    if test ! "x$PCLS" = x ; then
1866          echo "  Turning on PCL counter summary per timestep"
1867          echo "  Please make sure PCLINC, PCLLIB are defined"
1868          if test ! "x$FOOLAD" = x ; then
1869                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1870          else
1871                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1872          fi
1873          INCLUDES="$INCLUDES $PCLINC"
1874          LIBS="$LIBS $PCLLIB"
1875          PACKAGES="$PACKAGES showflops"
1876    fi
1877    if test ! "x$PAPI" = x ; then
1878          if test ! "x$PAPIS" = x ; then
1879              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1880              echo "  Sticking with PAPI flop summary per timestep!"
1881          else
1882              echo "  Turning on performance analysis with PAPI"
1883              echo "  Please make sure PAPIINC, PAPILIB are defined"
1884              DEFINES="$DEFINES -DUSE_PAPI"
1885              INCLUDES="$INCLUDES $PAPIINC"
1886              LIBS="$LIBS $PAPILIB"
1887          fi
1888    fi
1889    if test ! "x$PCL" = x ; then
1890          if test ! "x$PCLS" = x ; then
1891              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1892              echo "  Sticking with PCL flop summary per timestep!"
1893          else
1894              echo "  Turning on performance analysis with PCL"
1895              echo "  Please make sure PCLINC, PCLLIB are defined"
1896              DEFINES="$DEFINES -DUSE_PCL"
1897              INCLUDES="$INCLUDES $PCLINC"
1898              LIBS="$LIBS $PCLLIB"
1899          fi
1900    fi
1901    if test ! "x$HPMT" = x ; then
1902          if test ! "x$PAPI" = x ; then
1903              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1904              echo "  Sticking with PAPI!"
1905          else
1906            if test ! "x$PCL" = x ; then
1907              echo "  PCL and the HPM Toolkit cannot co-exist!"
1908              echo "  Sticking with PCL!"
1909            else
1910              echo "  Turning on performance analysis with the HPM Toolkit"
1911              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1912              DEFINES="$DEFINES -DUSE_LIBHPM"
1913              INCLUDES="$INCLUDES $HPMTINC"
1914              LIBS="$LIBS $HPMTLIB"
1915            fi
1916          fi
1917    fi
1918    if test ! "x$GSL" = x ; then
1919          echo "  Turning on use of GSL to control floating point calculations"
1920          echo "  Please make sure GSLINC, GSLLIB are defined"
1921          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1922          INCLUDES="$INCLUDES $GSLINC"
1923          LIBS="$LIBS $GSLLIB"
1924    fi
1925    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1926    if test ! "x$USE_EXTENDED_SRC" = x ; then
1927          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1928          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1929    fi
1930    
1931    printf "\n===  Checking system libraries  ===\n"
1932    printf "  Do we have the system() command using $FC...  "
1933    cat > genmake_tcomp.$FS <<EOF
1934          program hello
1935          call system('echo hi')
1936          end
1937    EOF
1938    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1939    RETVAL=$?
1940    if test "x$RETVAL" = x0 ; then
1941        HAVE_SYSTEM=t
1942        DEFINES="$DEFINES -DHAVE_SYSTEM"
1943        echo "yes"
1944    else
1945        HAVE_SYSTEM=
1946        echo "no"
1947    fi
1948    rm -f genmake_tcomp*
1949    
1950    printf "  Do we have the fdate() command using $FC...  "
1951    cat > genmake_tcomp.$FS <<EOF
1952          program hello
1953          CHARACTER*(128) string
1954          string = ' '
1955          call fdate( string )
1956          print *, string
1957          end
1958    EOF
1959    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1960    RETVAL=$?
1961    if test "x$RETVAL" = x0 ; then
1962        HAVE_FDATE=t
1963        DEFINES="$DEFINES -DHAVE_FDATE"
1964        echo "yes"
1965    else
1966        HAVE_FDATE=
1967        echo "no"
1968    fi
1969    rm -f genmake_tcomp*
1970    
1971    printf "  Do we have the etime() command using $FC... "
1972    cat > genmake_tcomp_1.$FS <<EOF
1973          program hello
1974          REAL*4 actual, tarray(2)
1975          EXTERNAL ETIME
1976          REAL*4 ETIME
1977          actual = ETIME( tarray )
1978          print *, tarray
1979          end
1980    EOF
1981    $FC $FFLAGS -o genmake_tcomp_1 genmake_tcomp_1.$FS > genmake_tcomp.log 2>&1
1982    RETVAL=$?
1983    if test "x$RETVAL" = x0 ; then
1984        HAVE_ETIME='Fct'
1985        DEFINES="$DEFINES -DHAVE_ETIME_FCT"
1986        echo " yes (${HAVE_ETIME})"
1987    else
1988      cat > genmake_tcomp_2.$FS <<EOF
1989          program hello
1990          REAL*4 actual, tarray(2)
1991          actual = -999.
1992          call ETIME( tarray, actual )
1993          if ( actual.ge.0. ) then
1994            print *, 0, tarray, actual
1995          else
1996            print *, 1, tarray, actual
1997          endif
1998          end
1999    EOF
2000      $FC $FFLAGS -o genmake_tcomp_2 genmake_tcomp_2.$FS >> genmake_tcomp.log 2>&1
2001      RETVAL=$?
2002      if test "x$RETVAL" = x0 ; then
2003        echo -n 'c,'
2004        ./genmake_tcomp_2 > genmake_tcomp_2.out 2>&1
2005        RETVAL=$?
2006      fi
2007      if test "x$RETVAL" = x0 ; then
2008        echo -n 'r:'
2009        RETVAL=`cat genmake_tcomp_2.out | $AWK '{print $1}'`
2010      fi
2011      if test "x$RETVAL" = x0 ; then
2012        HAVE_ETIME='SbR'
2013        DEFINES="$DEFINES -DHAVE_ETIME_SBR"
2014        echo " yes (${HAVE_ETIME})"
2015      else
2016        HAVE_ETIME=
2017        echo " no"
2018      fi
2019    fi
2020    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2021    rm -f genmake_tcomp*
2022    
2023    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
2024    check_HAVE_CLOC
2025    if test "x$HAVE_CLOC" != x ; then
2026        DEFINES="$DEFINES -DHAVE_CLOC"
2027        echo "yes"
2028    else
2029        echo "no"
2030        if test "x$EMBED_SRC" = xt ; then
2031            echo "    WARNING: you requested file embedding but it has"
2032            echo "      been disabled since C code cannot be called"
2033            EMBED_SRC=
2034        fi
2035    fi
2036    rm -f genmake_t*
2037    
2038    printf "  Can we unlimit the stack size using $FC...  "
2039    check_HAVE_SETRLSTK
2040    if test "x$HAVE_SETRLSTK" = xt ; then
2041        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2042        echo "yes"
2043    else
2044        echo "no"
2045    fi
2046    rm -f genmake_t*
2047    
2048    printf "  Can we register a signal handler using $FC...  "
2049    check_HAVE_SIGREG
2050    if test "x$HAVE_SIGREG" = xt ; then
2051        DEFINES="$DEFINES -DHAVE_SIGREG"
2052        echo "yes"
2053    else
2054        echo "no"
2055    fi
2056    rm -f genmake_t*
2057    
2058    printf "  Can we use stat() through C calls...  "
2059    check_HAVE_STAT
2060    if test "x$HAVE_STAT" != x ; then
2061        DEFINES="$DEFINES -DHAVE_STAT"
2062        echo "yes"
2063    else
2064        echo "no"
2065    fi
2066    rm -f genmake_t*
2067    
2068    printf "  Can we create NetCDF-enabled binaries...  "
2069    check_netcdf_libs
2070    if test "x$HAVE_NETCDF" != x ; then
2071        DEFINES="$DEFINES -DHAVE_NETCDF"
2072        echo "yes"
2073    else
2074        echo "no"
2075    fi
2076    
2077    printf "  Can we create LAPACK-enabled binaries...  "
2078    check_lapack_libs
2079    if test "x$HAVE_LAPACK" != x ; then
2080        DEFINES="$DEFINES -DHAVE_LAPACK"
2081        echo "yes"
2082    else
2083        echo "no"
2084    fi
2085    
2086    printf "  Can we call FLUSH intrinsic subroutine...  "
2087    check_HAVE_FLUSH
2088    if test "x$HAVE_FLUSH" = xt ; then
2089        DEFINES="$DEFINES -DHAVE_FLUSH"
2090        echo "yes"
2091    else
2092        echo "no"
2093    fi
2094    
2095    DEFINES="$DEFINES $IGNORE_TIME"
2096    if test "x$EMBED_SRC" = xt ; then
2097        build_embed_encode
2098    fi
2099    if test "x$EMBED_SRC" = xt ; then
2100        ENABLE="$ENABLE embed_files"
2101    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2102  fi  fi
2103    
2104  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2105  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2106  for d in $MODS ; do  for d in $MODS ; do
2107      if test ! -d $d ; then      if test ! -d $d ; then
2108          echo          echo
2109          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2110          exit 1          exit 1
2111      else      else
2112          echo -n " $d"          printf "$d "
2113          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2114          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2115            SOURCEDIRSMK="$SOURCEDIRSMK $d"
2116            INCLUDEDIRSMK="$INCLUDEDIRSMK $d"
2117      fi      fi
2118  done  done
2119  echo  echo
2120    
2121  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2122      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2123  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2124    
2125  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2126      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2127        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2128          EXEDIR=../exe          EXEDIR=../exe
2129      else      else
2130          EXEDIR=.          EXEDIR=.
# Line 675  fi Line 2137  fi
2137    
2138  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
2139      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2140        TOOLSDIRMK='$(ROOTDIR)'"/tools"
2141    else
2142        TOOLSDIRMK=${TOOLSDIR}
2143  fi  fi
2144  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2145      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2146      exit 1      exit 1
2147  fi  fi
2148  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2149      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2150        RETVAL=$?
2151        if test "x${RETVAL}" = x0 ; then
2152            S64='$(TOOLSDIR)/set64bitConst.sh'
2153        else
2154            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2155            RETVAL=$?
2156            if test "x${RETVAL}" = x0 ; then
2157                S64='$(TOOLSDIR)/set64bitConst.csh'
2158            else
2159                cat <<EOF
2160    
2161    ERROR: neither of the two default scripts:
2162    
2163        ${TOOLSDIR}/set64bitConst.sh
2164        ${TOOLSDIR}/set64bitConst.csh
2165    
2166      are working so please check paths or specify (with \$S64) a
2167      working version of this script.
2168    
2169    EOF
2170                exit 1
2171            fi
2172        fi
2173  fi  fi
2174    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2175    
2176  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2177    
2178    #  Set Standard Code Directories:
2179    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2180        STANDARDDIRS="eesupp model"
2181    fi
2182    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2183    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2184    ckM=$?
2185    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2186    ckE=$?
2187    if test $ckM = 0 -a $ckE = 1 ; then
2188        STANDARDDIRS="$STANDARDDIRS eesupp"
2189    fi
2190    
2191  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2192  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2193  #  they appear as regular source code  #  they appear as regular source code
2194  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2195      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2196      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2197        ) > make_eesupp.errors 2>&1
2198      RETVAL=$?      RETVAL=$?
2199      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2200          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2201      else      else
2202          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2203          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2204          exit 1          exit 1
2205      fi      fi
2206  fi  fi
2207    
2208    #same for pkg/exch2 and pkg/regrid
2209    for pdir in exch2 regrid ; do
2210        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2211            echo "  Making source files in pkg/${pdir} from templates"
2212            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2213            ) > make_${pdir}.errors 2>&1
2214            RETVAL=$?
2215            if test "x${RETVAL}" = x0 ; then
2216                rm -f make_${pdir}.errors
2217            else
2218                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2219                cat make_${pdir}.errors 1>&2
2220                exit 1
2221            fi
2222        fi
2223    done
2224    
2225  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2226  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2227      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2228      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2229          PDEPEND=$tmp  fi
2230      else  if  test "x${PKG_DEPEND}" = x ; then
2231          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2232          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2233  else  else
2234      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2235          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2236          exit 1          exit 1
2237      fi      fi
2238        echo "  getting package dependency info from  $PKG_DEPEND"
2239    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2240        get_pdepend_list $PKG_DEPEND
2241  fi  fi
2242  echo "  getting package dependency info from  $PDEPEND"  
2243  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2244  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2245  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2246      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2247      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2248  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2249  if test ! "x${RETVAL}" = x0 ; then  fi
2250      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2251      exit 1          echo "Warning:  No package groups information was specified."
2252            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2253    else
2254        if test ! -r ${PKG_GROUPS} ; then
2255            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2256            exit 1
2257        fi
2258        echo "  getting package groups info from      $PKG_GROUPS"
2259  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2260    
2261  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2262  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2263  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2264  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2265      for i in "." $MODS ; do      for i in "." $MODS ; do
2266          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2267                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2268                  break                  break
2269          fi          fi
2270      done      done
2271  fi  fi
2272  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2273      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2274  fi      if test "x${PKG_GROUPS}" = x ; then
2275  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2276      echo "default packages file disabled"          exit 1
2277        fi
2278  else  else
2279      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2280          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2281          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2282      else      else
2283          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2284          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2285          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2286          RETVAL=$?          RETVAL=$?
2287          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2288              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2289              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2290              exit 1              exit 1
2291          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2292      fi      fi
2293  fi  fi
2294    for i in $pkg_list ; do
2295        PACKAGES="$PACKAGES $i"
2296    done
2297    echo     "    before group expansion packages are:$PACKAGES"
2298    if test "x${PKG_GROUPS}" != x ; then
2299        RET=1
2300        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2301        echo "    after group expansion packages are: $PACKAGES"
2302    fi
2303    
2304  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2305    echo "" > $TMP.pack
2306    for i in $PACKAGES ; do
2307        echo $i >> $TMP.pack
2308    done
2309    for i in `grep  "-" $TMP.pack` ; do
2310        j=`echo $i | sed 's/[-]//'`
2311        DISABLE="$DISABLE $j"
2312    done
2313  pack=  pack=
2314  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2315      addit="t"      addit="t"
# Line 783  for p in $PACKAGES ; do Line 2321  for p in $PACKAGES ; do
2321      if test "x$addit" = xt ; then      if test "x$addit" = xt ; then
2322          pack="$pack $p"          pack="$pack $p"
2323      fi      fi
2324  done  done
2325  PACKAGES="$pack"  PACKAGES="$pack"
2326  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2327  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2328  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2329  for i in $PACKAGES ; do  # Test if each explicitly referenced package exists
2330      if test ! -d "$ROOTDIR/pkg/$i" ; then  for i in $PACKAGES ; do
2331          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      j=`echo $i | sed 's/[-+]//'`
2332          exit 1      if test ! -d "$ROOTDIR/pkg/$j" ; then
2333            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2334            exit 1
2335        fi
2336        echo $i >> $TMP.pack
2337    done
2338    PACKAGES=
2339    for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2340        PACKAGES="$PACKAGES $i"
2341    done
2342    rm -f $TMP.pack
2343    echo "    packages are: $PACKAGES"
2344    
2345    #  Check for package MNC: if NetCDF is available, then build the MNC
2346    #  template files ; otherwise, delete mnc from the list of packages.
2347    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2348    mnc_in=$?
2349    if test "x$HAVE_NETCDF" != xt ; then
2350        if test "x$mnc_in" = x0 ; then
2351            cat <<EOF
2352    *********************************************************************
2353    WARNING: the "mnc" package was enabled but tests failed to compile
2354      NetCDF applications.  Please check that:
2355    
2356      1) NetCDF is correctly installed for this compiler and
2357      2) the LIBS variable (within the "optfile") specifies the correct
2358           NetCDF library to link against.
2359    
2360      Due to this failure, the "mnc" package is now DISABLED.
2361    *********************************************************************
2362    EOF
2363            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2364            DISABLE="$DISABLE mnc"
2365        else
2366        #  this prevent to add mnc (due to pdepend rules) if not available
2367            DISABLE="$DISABLE mnc"
2368        fi
2369    else
2370        # we have NetCDF, we try to build MNC template files
2371        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2372        RETVAL=$?
2373        if test "x${RETVAL}" = x0 ; then
2374            rm -f make_mnc.errors
2375        else
2376            echo "Error: problem encountered while building source files in pkg/mnc:"
2377            cat make_mnc.errors 1>&2
2378            if test "x$mnc_in" = x0 ; then
2379                exit 1
2380            else
2381                DISABLE="$DISABLE mnc"
2382            fi
2383        fi
2384    fi
2385    
2386    #  Check for package PROFILES: if NetCDF is not available,
2387    #  then delete profiles from the list of available packages.
2388    if test "x$HAVE_NETCDF" != xt ; then
2389        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2390        RETVAL=$?
2391        if test "x$RETVAL" = x0 ; then
2392            cat <<EOF
2393    *********************************************************************
2394    WARNING: the "profiles" package was enabled but tests failed to
2395      compile NetCDF applications.  Please check that:
2396    
2397      1) NetCDF is correctly installed for this compiler and
2398      2) the LIBS variable (within the "optfile") specifies the correct
2399           NetCDF library to link against.
2400    
2401      Due to this failure, the "profiles" package is now DISABLED.
2402    *********************************************************************
2403    EOF
2404            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2405            DISABLE="$DISABLE profiles"
2406        else
2407        #  this prevent to add profiles (due to pdepend rules) if not available
2408            DISABLE="$DISABLE profiles"
2409        fi
2410    fi
2411    
2412    #  Make sure the openad package is enabled if using OpenAD
2413    if test "x$OPENAD" != x ; then
2414        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2415        RETVAL=$?
2416        if test "x$RETVAL" != x0 ; then
2417            cat <<EOF
2418    
2419    *********************************************************************
2420    ERROR: when generating an adjoint with OpenAD, the openad package
2421      must be enabled.  Please add it to packages.conf.
2422    *********************************************************************
2423    
2424    EOF
2425            exit 1
2426      fi      fi
2427      echo $i >> ./.tmp_pack  fi
 done  
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
 PACKAGES=  
 for i in $pack ; do  
     PACKAGES="$PACKAGES $i"  
 done  
 echo "    packages are:  $PACKAGES"  
2428    
2429  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2430  ck=    echo "  applying package dependency rules"
2431  while test "x$ck" != xtt ; do    ck=
2432      while test "x$ck" != xtt ; do
2433      i=0      i=0
2434      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2435      rtot=$nname      rtot=$nname
2436      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2437    
2438          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2439          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 821  while test "x$ck" != xtt ; do Line 2445  while test "x$ck" != xtt ; do
2445                  pin="t"                  pin="t"
2446              fi              fi
2447          done          done
2448            #  or in the current $STANDARDDIRS list?
2449            for p in $STANDARDDIRS ; do
2450                if test "x$p" = "x$pname" ; then pin="t" ; fi
2451            done
2452    
2453          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (=), (+) or (-) rule ?
2454          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
2455          eval $tmp          eval $tmp
2456          plus="-"          plus="a"
2457          echo $dname | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
2458          RETVAL=$?          RETVAL=$?
2459          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then plus="+" ; fi
2460              plus="+"          echo $dname | grep '^-' > /dev/null 2>&1
2461          fi          RETVAL=$?
2462            if test "x$RETVAL" = x0 ; then plus="-" ; fi
2463    
2464          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
2465          dname=`echo $dname | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[=+-]//'`
2466          din="f"          din="f"
2467          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2468              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 842  while test "x$ck" != xtt ; do Line 2471  while test "x$ck" != xtt ; do
2471          done          done
2472    
2473          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2474          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" != "x-" -a "x$din" = xf ; then
2475                #echo "   " $pname ": need to add :" $dname
2476              in_dis="f"              in_dis="f"
2477              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2478                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 850  while test "x$ck" != xtt ; do Line 2480  while test "x$ck" != xtt ; do
2480                  fi                  fi
2481              done              done
2482              if test "x$in_dis" = xt ; then              if test "x$in_dis" = xt ; then
2483                  echo "Error: can't satisfy package dependencies:"                  if test "x$plus" = "x+" ; then
2484                  echo "  \"$dname\" is required by the dependency rules"                      echo "Error: can't satisfy package dependencies:"
2485                  echo "  but is disallowed by the DISABLE settings"                      echo "  \"$dname\" is required with pkg \"$pname\" (dependency rules)"
2486                  exit 1                      echo "  but is disallowed by the DISABLE settings"
2487                        exit 1
2488                    elif test "x$ck" = xt ; then
2489                    #- (=) is a weaker dependency rule: warning but no stop
2490                        echo    "Warning: pkg \"$dname\" is set DISABLE (from: \"$PKG_LIST\")"
2491                        echo -n "     but is recommended with pkg \"$pname\" (dependency rules)"
2492                        echo " <- ignores recommendation"
2493                    fi
2494              else              else
2495                  PACKAGES="$PACKAGES $dname"                  PACKAGES="$PACKAGES $dname"
2496                  ck=                  ck=
# Line 863  while test "x$ck" != xtt ; do Line 2500  while test "x$ck" != xtt ; do
2500          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2501          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2502              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2503              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$dname\" was requested but is disallowed by"
2504              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$pname\""
2505              exit 1              exit 1
2506          fi          fi
2507          i=$(( $i + 1 ))          i=`expr $i + 1`
2508            #i=`echo "$i + 1" | bc -l`
2509      done      done
2510      ck=$ck"t"      ck=$ck"t"
2511  done    done
2512  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2513    fi
2514  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2515      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2516        adrmk='$(ROOTDIR)'"/pkg/$i"
2517      if test -d $adr ; then      if test -d $adr ; then
2518          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2519          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2520            SOURCEDIRSMK="$SOURCEDIRSMK $adrmk"
2521            INCLUDEDIRSMK="$INCLUDEDIRSMK $adrmk"
2522          if test "x$i" = xautodiff ; then          if test "x$i" = xautodiff ; then
2523              AUTODIFF_PKG_USED=t              AUTODIFF_PKG_USED=t
2524          fi          fi
# Line 886  for i in $PACKAGES ; do Line 2528  for i in $PACKAGES ; do
2528      fi      fi
2529  done  done
2530    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2531  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2532  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2533  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2534  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2535  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2536  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2537  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2538  all_pack=  all_pack=
2539    DISABLED_PACKAGES=
2540  for n in $names ; do  for n in $names ; do
2541      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2542          has_pack="f"          has_pack="f"
# Line 935  for n in $names ; do Line 2547  for n in $names ; do
2547              fi              fi
2548          done          done
2549          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2550              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2551              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2552          fi          fi
2553      fi      fi
2554  done  done
2555  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2556  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2557      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2558      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2559  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2560    
2561  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2562      case $i in      case $i in
2563          aim_v23)          aim_v23)
2564              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2565              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2566              ;;              ;;
2567      esac      esac
2568  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2569    
2570  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2571    
2572  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2573  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2574  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2575      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2576            adr="$ROOTDIR/$d/src"
2577            adrmk='$(ROOTDIR)/'"$d/src"
2578            if test ! -d $adr ; then
2579                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2580                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2581                exit 1
2582            else
2583                SOURCEDIRS="$SOURCEDIRS $adr"
2584                SOURCEDIRSMK="$SOURCEDIRSMK $adrmk"
2585            fi
2586            adr="$ROOTDIR/$d/inc"
2587            adrmk='$(ROOTDIR)/'"$d/inc"
2588            if test ! -d $adr ; then
2589                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2590                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2591                exit 1
2592            else
2593                INCLUDEDIRS="$INCLUDEDIRS $adr"
2594                INCLUDEDIRSMK="$INCLUDEDIRSMK $adrmk"
2595            fi
2596        done
2597  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2598    
2599  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2600  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2601  CPP_OPTIONS=  CPP_OPTIONS=
2602    CPP_EEOPTIONS=
2603  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2604    names=`ls -1 "$ROOTDIR/pkg"`
2605  for i in $spaths ; do  for i in $spaths ; do
2606      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2607      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2608          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2609          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2610          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2611            for n in $names ; do
2612                test_for_package_in_cpp_options $CPP_OPTIONS $n
2613            done
2614        fi
2615        try="$i/CPP_EEOPTIONS.h"
2616        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2617            echo "    found CPP_EEOPTIONS=\"$try\""
2618            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2619    #**** not yet enabled ****
2620    #        test_for_mpi_in_cpp_eeoptions $try
2621    #**** not yet enabled ****
2622            CPP_EEOPTIONS="$try"
2623      fi      fi
2624  done  done
2625  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2626      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2627      exit 1      exit 1
2628  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2629    
2630  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2631  #  compiler.  #  compiler.
2632  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2633      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2634  fi  fi
2635  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2636    touch $TMP.adSrcFiles
2637  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2638      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2639      for j in $list_files ; do      for j in $list_files ; do
2640          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2641      done      done
2642  done  done
2643    if test ! "x"$FS = "x.f" ; then
2644  cat <<EOF > adjoint_sed      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2645  s/call adopen(/call adopen ( mythid,\\      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2646       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2647    
2648  echo  echo
2649  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2650  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2651  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2652      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2653          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2654      fi      fi
2655  done  done
2656    
2657    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2658        if test ! "x$MPIINCLUDEDIR" = x ; then
2659            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2660            #   checking for additional included headers (in case of chain of included
2661            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2662            mpi_headers_do_local_copy
2663        fi
2664    fi
2665    
2666  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2667  rm -rf .links.tmp  rm -rf $TMP.links
2668  mkdir .links.tmp  mkdir $TMP.links
2669  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2670  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2671  echo -n 'SRCFILES = '    > srclist.inc      echo
2672  echo -n 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2673  echo -n 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2674  echo -n 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2675  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2676        echo "   sane such as:"
2677        echo
2678        echo "      umask 0002"
2679        echo
2680        echo "   and please verify that you have the proper permissions for"
2681        echo "   creating sub-directories and then reading files created"
2682        echo "   within them."
2683        echo
2684        exit 1
2685    fi
2686    rm -f $TMP.links/foo
2687    
2688    if test "x$OPENAD" != x ; then
2689        OAD_DONT_COMPILE="/dev/null"
2690        OAD_DONT_TRANSFORM="/dev/null"
2691        OAD_KEEP_ORIGINAL="/dev/null"
2692        OAD_CB2M_FILES="/dev/null"
2693        OADTOOLS="$TOOLSDIR/OAD_support"
2694        OADTOOLSMK='$(TOOLSDIR)/OAD_support'
2695        echo "  looking for dontCompile file:  "
2696        for i in "." $MODS $OADTOOLS ; do
2697            if test -r $i"/dontCompile" ; then
2698                OAD_DONT_COMPILE=$i"/dontCompile"
2699                echo "     found $OAD_DONT_COMPILE"
2700                break
2701            fi
2702        done
2703        echo "  looking for dontTransform file:  "
2704        for i in "." $MODS $OADTOOLS ; do
2705            if test -r $i"/dontTransform" ; then
2706                OAD_DONT_TRANSFORM=$i"/dontTransform"
2707                echo "     found $OAD_DONT_TRANSFORM"
2708                break
2709            fi
2710        done
2711        echo "  looking for keepOriginal file:  "
2712        for i in "." $MODS $OADTOOLS ; do
2713            if test -r $i"/keepOriginal" ; then
2714                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2715                echo "     found $OAD_KEEP_ORIGINAL"
2716                break
2717            fi
2718        done
2719        echo "  looking for cb2mFiles:  "
2720        for i in "." $MODS $OADTOOLS ; do
2721            if test -r $i"/cb2mFiles" ; then
2722                OAD_CB2M_FILES=$i"/cb2mFiles"
2723                echo "     found $OAD_CB2M_FILES"
2724                break
2725            fi
2726        done
2727        echo "   OpenAD exceptions:  "
2728    fi
2729    
2730    echo "# This section creates symbolic links" > $TMP.srclinks
2731    echo "" >> $TMP.srclinks
2732    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2733    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2734    printf 'C_SRC_FILES = '   > $TMP.csrclist
2735    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2736    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2737    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2738  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2739    alldirsmk=(${SOURCEDIRSMK} ${INCLUDEDIRSMK} ".")
2740    nd=0
2741  for d in $alldirs ; do  for d in $alldirs ; do
2742        dmk=${alldirsmk[${nd}]}
2743        nd=$((${nd}+1))
2744      deplist=      deplist=
2745      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2746      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2747        if test "x$OPENAD" != x ; then
2748            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2749        fi
2750      for sf in $sfiles ; do      for sf in $sfiles ; do
2751          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2752              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2753                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2754                  touch .links.tmp/$sf                  case $d/$sf in
2755                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2756                  case $extn in                          ignore_f=t
2757                      F)                          ;;
2758                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2759                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2760                            ;;
2761                      ./FC_NAMEMANGLE.h)
2762                            ignore_f=t
2763                            ;;
2764                      ./BUILD_INFO.h)
2765                            ignore_f=t
2766                            ;;
2767                      ./EMBEDDED_FILES.h)
2768                            ignore_f=t
2769                            ;;
2770                      *)
2771                            #  For the local directory *ONLY*,
2772                            #  ignore all soft-links
2773                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2774                                ignore_f=t
2775                            else
2776                                touch $TMP.links/$sf
2777                                deplist="$deplist $sf"
2778                            fi
2779                            ;;
2780                    esac
2781                    if test "x$ignore_f" = xf ; then
2782                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2783                        case $extn in
2784                          F)
2785                            echo    " \\"  >> $TMP.F77srclist
2786                            printf " $sf" >> $TMP.F77srclist
2787                            if test "x$OPENAD" = x ; then
2788                                basename=${sf%%.F}
2789                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2790                                if test -z "$isAD" ; then
2791                                    echo    " \\"  >> $TMP.nonADF77srclist
2792                                    printf " $sf" >> $TMP.nonADF77srclist
2793                                fi
2794                            else #- OpenAD case:
2795                                basename=${sf%%.F}
2796                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2797                                if test -z "$isAD" ; then
2798                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2799                                    if test -z "$toBeIgnored" ; then
2800                                        echo    " \\"  >> $TMP.nonADF77srclist
2801                                        printf " $sf" >> $TMP.nonADF77srclist
2802                                    else
2803                                        echo "    not to be compiled   :  $sf"
2804                                    fi
2805                                else # file is initially listed as an AD file we want to exclude it
2806                                     # or we want to retain the untransformed version
2807                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2808                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2809                                    if test -n "$notToBeTransformed"; then
2810                                        echo "    not to be transformed:  $sf"
2811                                    fi
2812                                    if test -n "$untransformedVersionToBeKept" ; then
2813                                        echo "    original to be kept  :  $sf"
2814                                    fi
2815                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2816                                        echo    " \\"  >> $TMP.nonADF77srclist
2817                                        printf " $sf" >> $TMP.nonADF77srclist
2818                                    fi
2819                                fi
2820                            fi
2821                          ;;                          ;;
2822                      F90)                      F90)
2823                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2824                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2825                          ;;                          ;;
2826                      c)                      c)
2827                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2828                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2829                          ;;                          ;;
2830                      h)                      h)
2831                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2832                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2833                          ;;                          ;;
2834                      flow)                      flow)
2835                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> $TMP.ad_flow_files
2836                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> $TMP.ad_flow_files
2837                          ;;                          ;;
2838                  esac                     esac
2839                    fi
2840              fi              fi
2841          fi          fi
2842      done      done
2843      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2844          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2845          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2846          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $dmk ( aka $d )" >> $TMP.srclinks
2847          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2848    # We need to make sure that the link isn't already there.
2849    # This may happen when make thinks that a header file has to be "remade"
2850    # because a module it depends on has changed.  In this case we do nothing.
2851            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $dmk >> $TMP.srclinks
2852          fi
2853      fi      fi
2854  done  done
2855  rm -rf .links.tmp  rm -rf $TMP.links
2856  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2857  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2858  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2859  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2860  echo "" >> ad_flow_files.inc  echo "" >> $TMP.hsrclist
2861    echo "" >> $TMP.ad_flow_files
2862    
2863    CMDLINE=$0
2864    for xx in "$@" ; do nw=`echo $xx | wc -w`
2865        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2866                            else CMDLINE="$CMDLINE '$xx'" ; fi
2867    done
2868    
2869  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2870      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2871  fi  fi
2872  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2873  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1147  echo "#    $MACHINE" >> $MAKEFILE Line 2875  echo "#    $MACHINE" >> $MAKEFILE
2875  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2876  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2877  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2878  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2879  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2880  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2881    
2882    EXE_AD=$EXECUTABLE"_ad"
2883    EXE_FTL=$EXECUTABLE"_ftl"
2884    EXE_SVD=$EXECUTABLE"_svd"
2885    
2886  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2887  #  #
2888    # OPTFILE="$OPTFILE"
2889    #
2890  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2891  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2892  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1162  cat >>$MAKEFILE <<EOF Line 2897  cat >>$MAKEFILE <<EOF
2897  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2898  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2899  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2900  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2901  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2902  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1171  cat >>$MAKEFILE <<EOF Line 2904  cat >>$MAKEFILE <<EOF
2904  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2905    
2906  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2907  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2908  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRSMK}
2909  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRSMK}
2910  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2911  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2912  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIRMK}
2913    OADTOOLS    = ${OADTOOLSMK}
2914    
2915  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2916  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = \$(ROOTDIR)/pkg/autodiff
2917    EXE_AD      = ${EXE_AD}
2918    EXE_FTL     = ${EXE_FTL}
2919    EXE_SVD     = ${EXE_SVD}
2920    
2921    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2922    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2923    
2924    # These files are created by Makefile
2925    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2926  EOF  EOF
2927    
2928  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2929        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2930    else
2931        echo "EMBEDDED_FILES = " >>$MAKEFILE
2932    fi
2933    
2934    # extract default cpp search path so we can pass it to makedepend
2935    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2936    
2937  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2938  # Unix ln (link)  # Unix ln (link)
2939  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2940  # Dependency generator  # Dependency generator
2941  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2942  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1198  KPP = ${KPP} Line 2945  KPP = ${KPP}
2945  FC = ${FC}  FC = ${FC}
2946  # Fortran compiler  # Fortran compiler
2947  F90C = ${F90C}  F90C = ${F90C}
2948    # C compiler
2949    CC = ${CC}
2950  # Link editor  # Link editor
2951  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2952    
2953  # Defines for CPP  # Defines for CPP
2954  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2955  # Includes for CPP  # Includes for CPP
2956  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2957    # default CPP includes for makedepend
2958    CPPINCLUDES = ${CPPINCLUDES}
2959  # Flags for KPP  # Flags for KPP
2960  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2961  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2962  # Optim./debug for FC  # Optim./debug for FC
2963  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
2964  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2965  # Optim./debug for FC  # Optim./debug for FC
2966  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2967  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2968    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2969  # Flags for CC  # Flags for CC
2970  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2971  # Files that should not be optimized  # Files that should not be optimized
2972  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2973  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2974  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2975  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2976  # Name of the Mekfile  # Name of the makefile
2977  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2978    # Name of the make program
2979    MAKE = ${MAKE}
2980    
2981  EOF  EOF
2982    
2983  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2984  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2985  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2986  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2987  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2988  echo               >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2989    
2990  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2991  rm -f ad_flow_files.inc  
2992    echo >> $MAKEFILE
2993    
2994    # add definitions for preprocessed sources
2995    # and note that not all systems allow case sensitive extensions
2996    # hence the $FS and $FS90 here.
2997    # for fixed format f90 files we use ff90 or FF90 resp
2998    # but these are not expected to be the original source files
2999    
3000    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
3001    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
3002    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
3003    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
3004    echo >> $MAKEFILE
3005    echo '.SUFFIXES:' >> $MAKEFILE
3006    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
3007    
3008  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3009    
3010  .SUFFIXES:  all: fwd_exe_target
3011  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
3012            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
3013            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3014            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3015            @-rm -f ad_config.template
3016            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
3017    
3018  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
3019  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
3020          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
3021    
3022  depend:  depend:
3023          @make links          @\$(MAKE) -f \$(MAKEFILE) links
3024          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
3025          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3026            -rm -f makedepend.out
3027    
3028    lib: libmitgcmuv.a
3029    
3030    libmitgcmuv.a: \$(SPECIAL_FILES) \$(OBJFILES)
3031            ar rcv libmitgcmuv.a \$(OBJFILES)
3032            ar d   libmitgcmuv.a main.o
3033    
3034  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  obj: \$(OBJFILES)
3035    
3036  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
3037    
3038  output.txt: \$(EXECUTABLE)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
3039    
3040    # remove most of the files that "make" generates
3041  clean:  clean:
3042          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
3043            -rm -rf *.o
3044            -rm -rf *.$FS *.flowdir
3045            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
3046    
3047    # remove most of the files that "make" and "make depend" generate
3048  Clean:  Clean:
3049          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3050          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3051          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3052            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3053    
3054    # remove also the executable, files that "genmake2" generates (except Makefile)
3055    #         and output from a run (plus log files from testreport)
3056  CLEAN:  CLEAN:
3057          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3058            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3059            -rm -f $LOGFILE genmake_state genmake_*optfile
3060            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3061            -rm -rf mpi_headers mnc_test_*
3062          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3063          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3064          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3065          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3066            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3067            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3068            -rm -f oad_cp.[0-9][0-9][0-9].?????
3069    
 Makefile: makefile  
3070  makefile:  makefile:
3071          ${0} $@          $THIS_SCRIPT $G2ARGS
3072  cleanlinks:  cleanlinks:
3073          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3074    
3075  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
3076  .F.f:  ${PACKAGES_DOT_H}:
3077          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
3078  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3079    AD_CONFIG.h:
3080            @echo Creating \$@ ...
3081            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3082    FC_NAMEMANGLE.h:
3083            @echo Creating \$@ ...
3084            echo "$FC_NAMEMANGLE" > \$@
3085    
3086    BUILD_INFO.h:
3087            @echo Creating \$@ ...
3088    EOF
3089    
3090    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3091    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3092    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3093    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3094    
3095    if test "x$EMBED_SRC" = xt ; then
3096        cat >>$MAKEFILE <<EOF
3097    
3098    decode_files.o : EMBEDDED_FILES.h
3099    
3100    ##  \$(F77_PP_SRC_FILES)
3101    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3102            @echo Creating \$@ ...
3103            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3104            -rm -f all_fF.tar.gz
3105            -gzip all_fF.tar
3106    
3107    EMBEDDED_FILES.h : all_fF.tar.gz
3108            @echo Creating \$@ ...
3109            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3110    
3111    EOF
3112    fi
3113    
3114    cat >>$MAKEFILE <<EOF
3115    
3116    # The normal chain of rules is (  .F - .$FS - .o  )
3117    
3118    ## This nullifies any default implicit rules concerning these two file types:
3119    ## %.o : %.F
3120    
3121    # C preprocessing and replacing the _d in constants:
3122    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3123    
3124    .F.$FS:
3125            \$(CPPCMD)  > \$@
3126    .$FS.o:
3127          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3128  .F90.f90:  .F.o:
3129          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3130  .f90.o:  .F90.$FS90:
3131            \$(CPPCMD)  > \$@
3132    .FF90.f$FS90:
3133            \$(CPPCMD)  > \$@
3134    .$FS90.o:
3135          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3136    .f$FS90.o:
3137            cp \$< \$(basename  \$<).f90
3138            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3139  .c.o:  .c.o:
3140          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3141    .flow.flowdir:
3142            \$(CPPCMD) > \$@
3143    
3144  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3145  .F.p:  .F.p:
3146          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3147  .p.f:  .p.$FS:
3148          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3149    
3150    EOF
3151    
3152  #=========================================  #=========================================
3153  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3154    #===  for TAMC/TAF  ======================
3155    
3156    if test "x$OPENAD" = x ; then
3157    
3158    cat >>$MAKEFILE <<EOF
3159    
3160  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3161  TAF            = ${TAF}  TAF            = ${TAF}
3162    
3163    TAF_EXTRA      = ${TAF_EXTRA}
3164    TAMC_EXTRA     = ${TAMC_EXTRA}
3165    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3166    
3167  EOF  EOF
3168    
3169  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"  ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
# Line 1310  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3171  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3171  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3172  for i in $ad_vars ; do  for i in $ad_vars ; do
3173      name=$i      name=$i
3174      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3175      eval $t1      eval $t1
3176      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3177      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3178  done  done
3179    
3180  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3181  echo >> $MAKEFILE  echo >> $MAKEFILE
3182  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3183  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3184  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3185      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3186      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3187  done  done
3188  echo >> $MAKEFILE  echo >> $MAKEFILE
3189    rm -f $TMP.adSrcFiles
3190    
3191    if test $CAT_SRC_FOR_TAF = 0 ; then
3192    cat >>$MAKEFILE <<EOF
3193    
3194    # ... Utilities ...
3195    remove_comments:
3196            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3197            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3198    adj_sed:
3199            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3200            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3201    ftl_sed:
3202            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3203            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3204    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3205    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3206    EOF
3207    fi
3208    
3209    cat >>$MAKEFILE <<EOF
3210    
3211    # ... AD ...
3212    adall: ad_exe_target
3213    adtaf: ad_taf_output.$FS
3214    adtamc: ad_tamc_output.$FS
3215    
3216    ad_exe_target:
3217            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3218            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3219            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3220            @-rm -f ad_config.template
3221            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3222    
3223    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3224            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3225            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3226            @-rm -f ad_config.template
3227            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3228            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3229            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3230    
3231    adtafonly:
3232            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3233            ls -l ad_input_code_ad.$FS
3234            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3235    
3236    EOF
3237    
3238    if test $CAT_SRC_FOR_TAF = 1 ; then
3239  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3240    # ... send 1 file to TAF ...
3241    ad_taf_output.$FS: ad_input_code.$FS
3242            @-rm -f ad_input_code_ad.$FS ; echo ''
3243            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3244            ls -l ad_input_code_ad.$FS
3245            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3246    
3247    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3248            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3249    
3250    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3251    
3252  ad_input_code.f: \$(F77FILES)  EOF
3253          @make \$(AD_FLOW_FILES)  
3254          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f  else
3255    cat >>$MAKEFILE <<EOF
3256    # ... send multiple files to TAF ...
3257    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3258            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3259            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3260            @-rm -f ad_config.template
3261            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3262            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3263            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3264            \$(MAKE) -f \$(MAKEFILE) remove_comments
3265            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3266            \$(MAKE) -f \$(MAKEFILE) adj_sed
3267            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3268    
3269    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3270            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3271            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3272    
3273    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3274            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3275    
3276  ad_taf_output.f: ad_input_code.f  EOF
3277          \$(TAF) \$(AD_TAF_FLAGS) ad_input_code.f  fi
         cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f  
3278    
3279  ad_taf: ad_taf_output.o \$(OBJFILES)  cat >>$MAKEFILE <<EOF
3280          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  adonlyfwd:
3281            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3282    
3283    adtrick:
3284            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3285    
3286  ad_tamc_output.f: ad_input_code.f  ad_tamc_output.$FS: ad_input_code.$FS
3287          \$(TAMC) \$(AD_TAMC_FLAGS) ad_input_code.f          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3288          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3289    
3290  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3291          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3292    
3293    # ... FTL ...
3294    ftlall: ftl_exe_target
3295    ftltaf: ftl_taf_output.$FS
3296    ftltamc: ftl_tamc_output.$FS
3297    
3298    ftl_exe_target:
3299            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3300            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3301            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3302            @-rm -f ad_config.template
3303            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3304    
3305    ftl_input_code.$FS: \$(AD_FILES)
3306            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3307            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3308            @-rm -f ad_config.template
3309            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3310            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3311            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3312    
3313    ftltafonly:
3314            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3315            ls -l ftl_input_code_tl.$FS
3316            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3317    
3318  flt_taf_output.f: ad_input_code.f  EOF
         \$(TAF) \$(FTL_TAF_FLAGS) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  
3319    
3320  flt_taf: flt_taf_output.o \$(OBJFILES)  if test $CAT_SRC_FOR_TAF = 1 ; then
3321          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)  cat >>$MAKEFILE <<EOF
3322    # ... send 1 file to TAF ...
3323    ftl_taf_output.$FS: ftl_input_code.$FS
3324            @-rm -f ftl_input_code_tl.$FS ; echo ''
3325            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3326            ls -l ftl_input_code_tl.$FS
3327            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3328    
3329    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3330            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3331    
3332    EOF
3333    
3334  #=========================================  else
3335    cat >>$MAKEFILE <<EOF
3336    # ... send multiple files to TAF ...
3337    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3338            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3339            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3340            @-rm -f ad_config.template
3341            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3342            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3343            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3344            \$(MAKE) -f \$(MAKEFILE) remove_comments
3345            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3346            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3347            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3348    
3349    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3350            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3351            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3352    
3353    EOF
3354    fi
3355    
3356    cat >>$MAKEFILE <<EOF
3357    ftl_tamc_output.$FS: ftl_input_code.$FS
3358            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3359            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3360    
3361    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3362            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3363    
3364    # ... SVD ...
3365    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3366            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3367            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3368    svdall: svd_touch svd_taf
3369    
3370    svd_taf: \$(OBJFILES)
3371            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3372    
3373            @echo "--->>> Only COMPILE svd code! <<<---"
3374            @echo "--->>> Assumes you previously <<<---"
3375            @echo "--->>> did make svdtaf        <<<---"
3376    
3377    svd_touch:
3378            @echo "--->>> Only COMPILE svd code! <<<---"
3379            @echo "--->>> Assumes you previously <<<---"
3380            @echo "--->>> did make svdtaf        <<<---"
3381            touch ad_taf_output.$FS ftl_taf_output.$FS
3382            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3383            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3384            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3385            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3386            @-rm -f ad_config.template
3387    
3388    EOF
3389    
3390    fi
3391    
3392    #===  for OpenAD  ========================
3393    
3394    if test "x$OPENAD" != x ; then
3395    
3396    # ============ begin OpenAD specific section ==============
3397    
3398    cat >>$MAKEFILE <<EOF
3399    # ... OpenAD ...
3400    
3401    # all the source files linked from the various locations:
3402    ALL_LINKED_FILES= \
3403    \$(F77_SRC_FILES) \
3404    \$(C_SRC_FILES) \
3405    \$(H_SRC_FILES) \
3406    \$(F90_SRC_FILES) \
3407    \$(SPECIAL_FILES)
3408    
3409    ifndef OPENADROOT
3410      \$(error "Error:  environment variable OPENADROOT not defined!")
3411    endif
3412    
3413    ifndef XAIFSCHEMAROOT
3414      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3415    endif
3416    
3417    ifndef XAIFBOOSTERROOT
3418      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3419    endif
3420    
3421  EOF  EOF
3422    
3423    echo "  Add the source list for common block to module conversion "
3424    echo >> $MAKEFILE
3425    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3426    for i in `cat ${OAD_CB2M_FILES}` ; do
3427      echo    " \\" >> $MAKEFILE
3428      printf " $i" >> $MAKEFILE
3429    done
3430    echo >> $MAKEFILE
3431    
3432    echo "  Add the source list for AD code generation"
3433    echo >> $MAKEFILE
3434    printf "AD_FILES = " >> $MAKEFILE
3435    for i in `cat ${OAD_CB2M_FILES}` ; do
3436      echo    " \\" >> $MAKEFILE
3437      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3438    done
3439    AD_FILES=`cat $TMP.adSrcFiles`
3440    for i in $AD_FILES ; do
3441      basename=${i%%.f}
3442      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3443      if test -z "$toBeIgnored" ; then
3444        echo    " \\" >> $MAKEFILE
3445        printf " $i" >> $MAKEFILE
3446      fi
3447    done
3448    echo >> $MAKEFILE
3449    rm -f $TMP.adSrcFiles
3450    
3451    cat >>$MAKEFILE <<EOF
3452    
3453    adAll: ad_exe_target
3454    .PHONY: adAll
3455    
3456    ad_exe_target:
3457            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3458            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3459            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3460            @-rm -f ad_config.template
3461            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3462    
3463    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3464    
3465    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3466    
3467    .PHONY: adDepend
3468    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3469            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3470            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3471            -rm -f makedepend.out
3472    
3473    OPENAD_SUPPORT_F90_SRC_FILES = \
3474    w2f__types.F90 \
3475    OAD_active.F90 \
3476    OAD_cp.F90 \
3477    OAD_rev.F90 \
3478    OAD_tape.F90 \
3479    OAD_regular_cp.F90 \
3480    revolve.F90
3481    
3482    OPENAD_SUPPORT_C_SRC_FILES = \
3483    iaddr.c \
3484    timeRatio.c
3485    
3486    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3487            cat \$^ > \$@
3488    
3489    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3490            cat \$^ > \$@
3491    
3492    f95_test.out: f95_test_mods.f90 f95_test.f90
3493            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3494            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3495    
3496    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3497    
3498    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3499    
3500    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3501    
3502    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3503            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3504    
3505    # create sources files modules from header files containing common blocks
3506    %_mod.FF90 : %.h \$(OADTOOLS)/cb2mGetModules.csh \$(OADTOOLS)/cb2mGetModules.awk
3507            \$(OADTOOLS)/cb2mGetModules.csh $< \$(OADTOOLS)/cb2mGetModules.awk
3508    
3509    # create new header files with USE statements for the new modules made above
3510    %_mod.h : %.h \$(OADTOOLS)/cb2mGetHeaders.csh \$(OADTOOLS)/cb2mGetHeaders.awk