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revision 1.277 by jmc, Tue Jan 12 20:43:00 2016 UTC revision 1.281 by jmc, Thu Feb 16 23:27:08 2017 UTC
# Line 32  Usage: "$0" [OPTIONS] Line 32  Usage: "$0" [OPTIONS]
32            "tools/adjoint_options/adjoint_oad" (for OpenAD built) or            "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
34    
35      -nooptfile | --nooptfile      -optfile NAME | --optfile NAME | -of NAME | --of NAME
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
36        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
37            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
38            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
# Line 698  get_pdepend_list()  { Line 697  get_pdepend_list()  {
697        echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""        echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
698        exit 1        exit 1
699      fi      fi
700        #echo "---- content of tmp file '.pd_tmp' :" ; cat .pd_tmp ; echo "---- end of file"
701      . ./.pd_tmp      . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
703  }  }
# Line 1408  for ac_option in "$@" ; do Line 1408  for ac_option in "$@" ; do
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410    
         -nooptfile | --nooptfile)  
             OPTFILE="NONE" ;;  
1411          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1412              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1413          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
# Line 1720  if test "x${AD_OPTFILE}" != xNONE ; then Line 1718  if test "x${AD_OPTFILE}" != xNONE ; then
1718  fi  fi
1719    
1720  #====================================================================  #====================================================================
1721    # Initialize INCLUDEDIRSMK from and optfile INCLUDEDIRS
1722    if test "x${INCLUDEDIRS}" != "x" ; then
1723     INCLUDEDIRSMK=${INCLUDEDIRS}
1724    fi
1725    
1726    #====================================================================
1727  #  Set default values if not set by the optfile  #  Set default values if not set by the optfile
1728  #  #
1729  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,  #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
# Line 2108  for d in $MODS ; do Line 2112  for d in $MODS ; do
2112          printf "$d "          printf "$d "
2113          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2114          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2115            SOURCEDIRSMK="$SOURCEDIRSMK $d"
2116            INCLUDEDIRSMK="$INCLUDEDIRSMK $d"
2117      fi      fi
2118  done  done
2119  echo  echo
# Line 2131  fi Line 2137  fi
2137    
2138  if test "x${TOOLSDIR}" = x ; then  if test "x${TOOLSDIR}" = x ; then
2139      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2140        TOOLSDIRMK='$(ROOTDIR)'"/tools"
2141    else
2142        TOOLSDIRMK=${TOOLSDIR}
2143  fi  fi
2144  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2145      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
# Line 2441  if  test "x${PKG_DEPEND}" != x ; then Line 2450  if  test "x${PKG_DEPEND}" != x ; then
2450              if test "x$p" = "x$pname" ; then pin="t" ; fi              if test "x$p" = "x$pname" ; then pin="t" ; fi
2451          done          done
2452    
2453          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (=), (+) or (-) rule ?
2454          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
2455          eval $tmp          eval $tmp
2456          plus="-"          plus="a"
2457          echo $dname | grep '^+' > /dev/null 2>&1          echo $dname | grep '^+' > /dev/null 2>&1
2458          RETVAL=$?          RETVAL=$?
2459          if test "x$RETVAL" = x0 ; then          if test "x$RETVAL" = x0 ; then plus="+" ; fi
2460              plus="+"          echo $dname | grep '^-' > /dev/null 2>&1
2461          fi          RETVAL=$?
2462            if test "x$RETVAL" = x0 ; then plus="-" ; fi
2463    
2464          #  Is $dname in the current $PACKAGES list?          #  Is $dname in the current $PACKAGES list?
2465          dname=`echo $dname | sed -e 's/^[+-]//'`          dname=`echo $dname | sed -e 's/^[=+-]//'`
2466          din="f"          din="f"
2467          for p in $PACKAGES ; do          for p in $PACKAGES ; do
2468              if test "x$p" = "x$dname" ; then              if test "x$p" = "x$dname" ; then
# Line 2461  if  test "x${PKG_DEPEND}" != x ; then Line 2471  if  test "x${PKG_DEPEND}" != x ; then
2471          done          done
2472    
2473          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2474          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" != "x-" -a "x$din" = xf ; then
2475              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2476              in_dis="f"              in_dis="f"
2477              for dis in $DISABLE ; do              for dis in $DISABLE ; do
# Line 2470  if  test "x${PKG_DEPEND}" != x ; then Line 2480  if  test "x${PKG_DEPEND}" != x ; then
2480                  fi                  fi
2481              done              done
2482              if test "x$in_dis" = xt ; then              if test "x$in_dis" = xt ; then
2483                  echo "Error: can't satisfy package dependencies:"                  if test "x$plus" = "x+" ; then
2484                  echo "  \"$dname\" is required by the dependency rules"                      echo "Error: can't satisfy package dependencies:"
2485                  echo "  but is disallowed by the DISABLE settings"                      echo "  \"$dname\" is required with pkg \"$pname\" (dependency rules)"
2486                  exit 1                      echo "  but is disallowed by the DISABLE settings"
2487                        exit 1
2488                    elif test "x$ck" = xt ; then
2489                    #- (=) is a weaker dependency rule: warning but no stop
2490                        echo    "Warning: pkg \"$dname\" is set DISABLE (from: \"$PKG_LIST\")"
2491                        echo -n "     but is recommended with pkg \"$pname\" (dependency rules)"
2492                        echo " <- ignores recommendation"
2493                    fi
2494              else              else
2495                  PACKAGES="$PACKAGES $dname"                  PACKAGES="$PACKAGES $dname"
2496                  ck=                  ck=
# Line 2483  if  test "x${PKG_DEPEND}" != x ; then Line 2500  if  test "x${PKG_DEPEND}" != x ; then
2500          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2501          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2502              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2503              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$dname\" was requested but is disallowed by"
2504              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$pname\""
2505              exit 1              exit 1
2506          fi          fi
2507          i=`echo "$i + 1" | bc -l`          i=`expr $i + 1`
2508          #i=$(( $i + 1 ))          #i=`echo "$i + 1" | bc -l`
2509      done      done
2510      ck=$ck"t"      ck=$ck"t"
2511    done    done
# Line 2496  if  test "x${PKG_DEPEND}" != x ; then Line 2513  if  test "x${PKG_DEPEND}" != x ; then
2513  fi  fi
2514  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2515      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2516        adrmk='$(ROOTDIR)'"/pkg/$i"
2517      if test -d $adr ; then      if test -d $adr ; then
2518          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2519          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2520            SOURCEDIRSMK="$SOURCEDIRSMK $adrmk"
2521            INCLUDEDIRSMK="$INCLUDEDIRSMK $adrmk"
2522          if test "x$i" = xautodiff ; then          if test "x$i" = xautodiff ; then
2523              AUTODIFF_PKG_USED=t              AUTODIFF_PKG_USED=t
2524          fi          fi
# Line 2554  BUILDDIR=${BUILDDIR:-.} Line 2574  BUILDDIR=${BUILDDIR:-.}
2574  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2575      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2576          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2577            adrmk='$(ROOTDIR)/'"$d/src"
2578          if test ! -d $adr ; then          if test ! -d $adr ; then
2579              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2580              echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2581              exit 1              exit 1
2582          else          else
2583              SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2584                SOURCEDIRSMK="$SOURCEDIRSMK $adrmk"
2585          fi          fi
2586          adr="$ROOTDIR/$d/inc"          adr="$ROOTDIR/$d/inc"
2587            adrmk='$(ROOTDIR)/'"$d/inc"
2588          if test ! -d $adr ; then          if test ! -d $adr ; then
2589              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2590              echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2591              exit 1              exit 1
2592          else          else
2593              INCLUDEDIRS="$INCLUDEDIRS $adr"              INCLUDEDIRS="$INCLUDEDIRS $adr"
2594                INCLUDEDIRSMK="$INCLUDEDIRSMK $adrmk"
2595          fi          fi
2596      done      done
2597  fi  fi
# Line 2667  if test "x$OPENAD" != x ; then Line 2691  if test "x$OPENAD" != x ; then
2691      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2692      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2693      OADTOOLS="$TOOLSDIR/OAD_support"      OADTOOLS="$TOOLSDIR/OAD_support"
2694        OADTOOLSMK='$(TOOLSDIR)/OAD_support'
2695      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2696      for i in "." $MODS $OADTOOLS ; do      for i in "." $MODS $OADTOOLS ; do
2697          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2711  printf 'F90_SRC_FILES = ' > $TMP.F90srcl Line 2736  printf 'F90_SRC_FILES = ' > $TMP.F90srcl
2736  printf 'H_SRC_FILES = '   > $TMP.hsrclist  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2737  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2738  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2739    alldirsmk=(${SOURCEDIRSMK} ${INCLUDEDIRSMK} ".")
2740    nd=0
2741  for d in $alldirs ; do  for d in $alldirs ; do
2742        dmk=${alldirsmk[${nd}]}
2743        nd=$((${nd}+1))
2744      deplist=      deplist=
2745      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2746      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
# Line 2814  for d in $alldirs ; do Line 2843  for d in $alldirs ; do
2843      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2844        if test "$d" != "." ; then        if test "$d" != "." ; then
2845          echo "" >> $TMP.srclinks          echo "" >> $TMP.srclinks
2846          echo "#  These files are linked from $d" >> $TMP.srclinks          echo "#  These files are linked from $dmk ( aka $d )" >> $TMP.srclinks
2847          echo "$deplist :" >> $TMP.srclinks          echo "$deplist :" >> $TMP.srclinks
2848  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2849  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2850  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2851          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $dmk >> $TMP.srclinks
2852        fi        fi
2853      fi      fi
2854  done  done
# Line 2876  cat >>$MAKEFILE <<EOF Line 2905  cat >>$MAKEFILE <<EOF
2905    
2906  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2907  BUILDDIR    = ${BUILDDIR}  BUILDDIR    = ${BUILDDIR}
2908  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRSMK}
2909  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRSMK}
2910  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2911  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2912  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIRMK}
2913  OADTOOLS    = ${OADTOOLS}  OADTOOLS    = ${OADTOOLSMK}
2914    
2915  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2916  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = \$(ROOTDIR)/pkg/autodiff
2917  EXE_AD      = ${EXE_AD}  EXE_AD      = ${EXE_AD}
2918  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2919  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
# Line 2998  depend: Line 3027  depend:
3027    
3028  lib: libmitgcmuv.a  lib: libmitgcmuv.a
3029    
3030  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(SPECIAL_FILES) \$(OBJFILES)
3031          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
3032          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
3033    
# Line 3474  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N Line 3503  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N
3503          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3504    
3505  # create sources files modules from header files containing common blocks  # create sources files modules from header files containing common blocks
3506  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk  %_mod.FF90 : %.h \$(OADTOOLS)/cb2mGetModules.csh \$(OADTOOLS)/cb2mGetModules.awk
3507          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk          \$(OADTOOLS)/cb2mGetModules.csh $< \$(OADTOOLS)/cb2mGetModules.awk
3508    
3509  # create new header files with USE statements for the new modules made above  # create new header files with USE statements for the new modules made above
3510  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk  %_mod.h : %.h \$(OADTOOLS)/cb2mGetHeaders.csh \$(OADTOOLS)/cb2mGetHeaders.awk
3511          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \$(OADTOOLS)/cb2mGetHeaders.csh $< \$(OADTOOLS)/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3512    
3513  # change the include directives of everybody to refer to  the new header files with the USE statements  # change the include directives of everybody to refer to  the new header files with the USE statements
3514  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash  %_cb2m.FF90 : %.F \$(OADTOOLS)/cb2mUseModules.bash
3515          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}          \$(OADTOOLS)/cb2mUseModules.bash $< ${MPI}
3516    
3517  # makefile debug rule  # makefile debug rule
3518  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3498  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FI Line 3527  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FI
3527    
3528  # replace stop statements (to avoid the implied unstructured control flow)  with print statements  # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3529  ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90  ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3530          cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90          cat \$< | sed -f \$(OADTOOLS)/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3531    
3532  # F -> WHIRL  # F -> WHIRL
3533  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
# Line 3521  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS Line 3550  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS
3550          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3551    
3552  # insert template directives  # insert template directives
3553  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \$(OADTOOLS)/insertTemplateDir.bash
3554          \${OADTOOLS}/insertTemplateDir.bash \$< \$@          \$(OADTOOLS)/insertTemplateDir.bash \$< \$@
3555    
3556  PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F  PPEXTRAS=\$(notdir \$(wildcard \$(OADTOOLS)/ad_template.*.F)) ad_inline.F
3557  # postprocess F'  # postprocess F'
3558  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3559          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
# Line 3539  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f Line 3568  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f
3568    
3569  # link the support files:  # link the support files:
3570  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3571          \$(LN) \${OADTOOLS}/\$@ .          \$(LN) \$(OADTOOLS)/\$@ .
3572    
3573  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3574    

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