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revision 1.26 by heimbach, Thu Oct 30 19:11:45 2003 UTC revision 1.277 by jmc, Tue Jan 12 20:43:00 2016 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -nooptfile | --nooptfile
36          -optfile NAME | --optfile NAME | -of NAME | --of NAME
37          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
38              Use "NAME" as the optfile.  By default, an attempt will be
39              made to find an appropriate "standard" optfile in the
40              tools/build_options/ directory.
41    
42        -pdepend NAME | --pdepend NAME
43          -pdepend=NAME | --pdepend=NAME
44              Get package dependency information from "NAME".
45    
46        -pgroups NAME | --pgroups NAME
47          -pgroups=NAME | --pgroups=NAME
48              Get the package groups information from "NAME".
49    
50        -bash NAME
51              Explicitly specify the Bourne or BASH shell to use
52    
53        -make NAME | -m NAME
54          --make=NAME | -m=NAME
55              Use "NAME" for the MAKE program. The default is "make" but
56              many platforms, "gmake" is the preferred choice.
57    
58        -makefile NAME | -mf NAME
59          --makefile=NAME | -mf=NAME
60              Call the makefile "NAME".  The default is "Makefile".
61    
62        -makedepend NAME | -md NAME
63          --makedepend=NAME | -md=NAME
64              Use "NAME" for the MAKEDEPEND program.
65    
66        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
67          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
68              Specify the location of the MITgcm ROOTDIR as "NAME".
69              By default, genamke will try to find the location by
70              looking in parent directories (up to the 5th parent).
71    
72        -mods NAME | --mods NAME | -mo NAME | --mo NAME
73          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
74              Here, "NAME" specifies a list of directories that are
75              used for additional source code.  Files found in the
76              "mods list" are given preference over files of the same
77              name found elsewhere.
78    
79        -disable NAME | --disable NAME
80          -disable=NAME | --disable=NAME
81              Here "NAME" specifies a list of packages that we don't
82              want to use.  If this violates package dependencies,
83              genamke will exit with an error message.
84    
85        -enable NAME | --enable NAME
86          -enable=NAME | --enable=NAME
87              Here "NAME" specifies a list of packages that we wish
88              to specifically enable.  If this violates package
89              dependencies, genamke will exit with an error message.
90    
91        -standarddirs NAME | --standarddirs NAME
92          -standarddirs=NAME | --standarddirs=NAME
93              Here, "NAME" specifies a list of directories to be
94              used as the "standard" code.
95    
96        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
97          -fc=NAME | --fc=NAME
98              Use "NAME" as the fortran compiler.  By default, genmake
99              will search for a working compiler by trying a list of
100              "usual suspects" such as g77, f77, etc.
101    
102        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
103              Use "NAME" as the C compiler.  By default, genmake
104              will search for a working compiler by trying a list of
105              "usual suspects" such as gcc, c89, cc, etc.
106    
107        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
108              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
109              *only* works if CPP_EEOPTIONS.h allows this.
110    
111        -ignoretime | -ignore_time | --ignoretime | --ignore_time
112              Ignore all the "wall clock" routines entirely.  This will
113              not in any way hurt the model results -- it simply means
114              that the code that checks how long the model spends in
115              various routines will give junk values.
116    
117        -ts | --ts
118              Produce timing information per timestep
119        -papis | --papis
120              Produce summary MFlop/s (and IPC) with PAPI per timestep
121        -pcls | --pcls
122              Produce summary MFlop/s etc. with PCL per timestep
123        -foolad | --foolad
124              Fool the AD code generator
125        -papi | --papi
126              Performance analysis with PAPI
127        -pcl | --pcl
128              Performance analysis with PCL
129        -hpmt | --hpmt
130              Performance analysis with the HPM Toolkit
131    
132        -ieee | --ieee
133              use IEEE numerics.  Note that this option *only* works
134              if it is supported by the OPTFILE that is being used.
135        -devel | --devel
136              Add additional warning and debugging flags for development
137              (if supported by the OPTFILE); also switch to IEEE numerics.
138        -gsl | --gsl
139              Use GSL to control floating point rounding and precision
140    
141        -mpi | --mpi
142              Include MPI header files and link to MPI libraries
143        -mpi=PATH | --mpi=PATH
144              Include MPI header files and link to MPI libraries using MPI_ROOT
145              set to PATH. i.e. Include files from \$PATH/include, link to libraries
146              from \$PATH/lib and use binaries from \$PATH/bin.
147    
148        -omp | --omp
149              Activate OpenMP code + use Compiler option OMPFLAG
150        -omp=OMPFLAG | --omp=OMPFLAG
151              Activate OpenMP code + use Compiler option OMPFLAG
152    
153        -es | --es | -embed-source | --embed-source
154              Embed a tarball containing the full source code
155              (including the Makefile, etc.) used to build the
156              executable [off by default]
157    
158        -ds | --ds
159              Report genmake internal variables status (DUMPSTATE)
160              to file "genmake_state" (for debug purpose)
161    
162      While it is most often a single word, the "NAME" variables specified
163      above can in many cases be a space-delimited string such as:
164    
165        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
166        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
167        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
168    
169      which, depending upon your shell, may need to be single-quoted.
170    
171      For more detailed genmake documentation, please see:
172    
173        http://mitgcm.org/public/devel_HOWTO/
174    
175    EOF
176    
177        exit 1
178    }
179    
180  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
181  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
182  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
183      cpp_options=$1      cpp_options=$1
184      pkg=$2      pkg=$2
185      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
186      RETVAL=$?      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
187      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
188          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
189          exit 99  }
190      fi  
191      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
192      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
193      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
194          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
195          exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
196      fi      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
197      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  }
198    
199    # Search for particular string in a file. Return 1 if detected, 0 if not
200    # usage: test_for_string_in_file file string
201    test_for_string_in_file() {
202        file=$1
203        strng=$2
204        grep "$strng" $file > /dev/null 2>&1
205      RETVAL=$?      RETVAL=$?
206      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
207          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
208            grep -i "$strng" $file
209          exit 99          exit 99
210      fi      fi
211      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
212  }  }
213    
214  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
215  # the package list.  # the package list.
216  expand_pkg_groups() {  expand_pkg_groups() {
217      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
218      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
219          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221          matched=0          matched=0
222          for i in $PACKAGES ; do          for i in $PACKAGES ; do
223              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
224              RETVAL=$?              RETVAL=$?
225              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
226                  matched=1                  matched=1
227                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
228                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
229                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
230              else              else
231                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
232              fi              fi
233          done          done
234          PACKAGES=$new_packages          PACKAGES=$new_packages
235          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
236            return $matched
237      else      else
238          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
239      fi      fi
240  }  }
241    
242  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
243  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
244    check_for_broken_Ff()  {
245        #  Do we have defaults for $FS and/or $FS90 ?
246        tfs=f
247        tfs9=f90
248        if test "x$FS" != x ; then
249            tfs="$FS"
250        fi
251        if test "x$FS90" != x ; then
252            tfs9="$FS90"
253        fi
254    
255      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
256      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
257      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`        program hello
258      PLATFORM=`echo $tmp3 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        write(*,*) 'hi'
259      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        stop
260      echo "  The platform appears to be:  $PLATFORM"        end
261  #     if test "x$OFLIST" = x ; then  EOF
262  #       echo "  No pre-defined options files were found matching this platform"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "  but examples for other platforms can be found in:"  
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
263      RETVAL=$?      RETVAL=$?
264      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
265          LN="ln -s"          if test "x$FS" = x ; then
266                FS='for'
267                FS90='fr9'
268                check_for_broken_Ff
269            else
270                cat <<EOF 2>&1
271    ERROR: Your file system cannot distinguish between *.F and *.f files
272      (fails the "cp" test) and this program cannot find a suitable
273      replacement extension.  Please try a different build environment or
274      contact the <MITgcm-support@mitgcm.org> list for help.
275    
276    EOF
277                exit -1
278            fi
279            return
280        fi
281        rm -f genmake_hello.*
282    
283        #  Check the ability of ${MAKE} and ${LN} to use the current set
284        #  of extensions.
285        cat <<EOF >> genmake_hello.F
286          program hello
287          write(*,*) 'hi'
288          stop
289          end
290    EOF
291        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
292        cat <<EOF >> $MAKEFILE
293    .SUFFIXES:
294    .SUFFIXES: .$tfs .F
295    .F.$tfs:
296            $LN \$< \$@
297    EOF
298        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
299        RETVAL=$?
300        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
301            if test "x$FS" = x ; then
302                FS='for'
303                FS90='fr9'
304                check_for_broken_Ff
305            else
306                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
307                echo "       see simple makefile: '$MAKEFILE' (left here)"
308                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
309                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
310                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
311                echo ""
312                exit -1
313                return
314            fi
315        fi
316        rm -f genmake_hello.* $MAKEFILE
317        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
318    
319        #  If we make it here, use the extensions
320        FS=$tfs
321        FS90=$tfs9
322        return
323    }
324    
325    look_for_makedepend()  {
326    
327        #  The "original" makedepend is part of the Imake system that is
328        #  most often distributed with XFree86 or with an XFree86 source
329        #  package.  As a result, many machines (eg. generic Linux) do not
330        #  have a system-default "makedepend" available.  For those
331        #  systems, we have two fall-back options:
332        #
333        #    1) a makedepend implementation shipped with the cyrus-imapd
334        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
335        #    2) a local tools/xmakedepend shell script
336        #
337        #  So the choices are, in order:
338        #    1) use the user-specified program
339        #    2) use the local xmakedepend script (get all dependencies, but slower)
340        #    3) use a system-wide default
341        #    4) locally build and use the cyrus makedepend
342        #             (faster, but can miss some dependencies)
343        #
344        echo >> $LOGFILE
345        echo "running: look_for_makedepend()" >> $LOGFILE
346        if test "x${MAKEDEPEND}" != x ; then
347            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
348            RETVAL=$?
349            if test x"$RETVAL" = x0 ; then
350                build_cyrus_makedepend
351                RETVAL=$?
352                if test "x$RETVAL" != x0 ; then
353                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
354                    MAKEDEPEND=
355                fi
356            else
357                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
358                RETVAL=$?
359                if test "x$RETVAL" = x0 ; then
360                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
361                fi
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365        if test "x${MAKEDEPEND}" = x ; then
366            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
367            #  echo 'MAKEFILE="'$MAKEFILE'"'
368            cat <<EOF >> $MAKEFILE
369    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
370    #
371    #   Some "makedepend" implementations will die if they cannot
372    #   find a Makefile -- so this file is here to gives them an
373    #   empty one to find and parse.
374    EOF
375            cat <<EOF >> genmake_tc.f
376          program test
377          write(*,*) 'test'
378          stop
379          end
380    EOF
381            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
382            RV1=$?
383            which makedepend > /dev/null 2>&1
384            RV2=$?
385            if test "x${RV2}" = x0 ; then
386                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
387                RV3=$? ; loc_msg='not working.'
388            else RV3=$RV2 ; loc_msg='not found.'
389            fi
390            test -f $MAKEFILE  &&  rm -f $MAKEFILE
391            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
392            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
393            if test "x${RV1}" = x0 ; then
394                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            elif test "x${RV3}" = x0 ; then
397                echo "    local tools/xmakedepend not working. Use system-default makedepend"
398                MAKEDEPEND=makedepend
399                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
400            else
401                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
402                echo -n "    Try to build cyrus-makedepend ..."
403                #  Try to build the cyrus implementation
404                build_cyrus_makedepend
405                RETVAL=$?
406                if test "x$RETVAL" = x0 ; then
407                    echo "  Works"
408                else
409                    echo "  Fails" ; echo "" >> $LOGFILE
410                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
411                    echo ""
412                    exit -1
413                    return
414                fi
415            fi
416        fi
417    }
418    
419    build_cyrus_makedepend()  {
420        echo >> $LOGFILE
421        echo "running: build_cyrus_makedepend()" >> $LOGFILE
422        rm -f ./genmake_cy_md
423        (
424            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
425                &&  ./configure > /dev/null 2>&1  \
426                &&  $MAKE > /dev/null 2>&1
427            if test -x ./makedepend.exe ; then
428                $LN ./makedepend.exe ./makedepend
429            fi
430            ./makedepend ifparser.c > /dev/null 2>&1  \
431                &&  echo "true"
432        ) > ./genmake_cy_md
433        grep true ./genmake_cy_md > /dev/null 2>&1
434        RETVAL=$?
435        rm -f ./genmake_cy_md
436        if test "x$RETVAL" = x0 ; then
437            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
438            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
439            return 0
440      else      else
441          echo "Error: \"ln -s\" does not appear to work on this system!"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
442          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          return 1
         exit 1  
443      fi      fi
444      rm -f test link  }
445    
446      if test "x$CPP" = x ; then  build_embed_encode()
447          CPP="cpp -traditional -P"  {
448        printf "  building the embed-encode utility...  "
449        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
450            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
451                echo
452                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
453                echo
454                EMBED_SRC=f
455                return 1
456            fi
457            clist="cc gcc c89 $CC"
458            for ic in $clist ; do
459                comm="$ic -o encode_files encode_files.c"
460                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
461                RETVAL=$?
462                if test "x$RETVAL" = x0 ; then
463                    echo "OK"
464                    return 0
465                fi
466            done
467            echo
468            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
469            echo "      so it has been disabled"
470            echo
471            EMBED_SRC=f
472            return 1
473      fi      fi
474        echo "OK"
475    }
476    
477      # look for possible fortran compilers  #  look for possible C compilers
478      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  look_for_C_compilers() {
479      p_FC=      echo >> $LOGFILE
480        echo "running: look_for_C_compilers()" >> $LOGFILE
481        rm -f ./genmake_hello.c  ./genmake_hello
482        cat >> genmake_hello.c << EOF
483    #include <stdio.h>
484    int main(int argc, char **argv) {
485      printf("Hello!\n");
486      return 0;
487    }
488    EOF
489        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
490        p_CC=
491      for c in $tmp ; do      for c in $tmp ; do
492          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
493          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
494            $COMM >> $LOGFILE 2>&1
495            RETVAL=$?
496            if test "x${RETVAL}" = x0 ; then
497                echo " $c test successful" >> $LOGFILE
498                p_CC="$p_CC $c"
499            fi
500        done
501        rm -f ./genmake_hello.c ./genmake_hello
502        if test "x${p_CC}" = x ; then
503            cat 1>&2 <<EOF
504    
505    Error: No C compilers were found in your path.  Please specify one using:
506    
507        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
508        2) the CC or MITGCM_CC environment variables.
509    
510    EOF
511            exit 1
512        else
513            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
514            if test "x$CC" = x ; then
515                CC=`echo $p_CC | $AWK '{print $1}'`
516                echo "  Setting C compiler to: "$CC
517            fi
518        fi
519        echo " --> set CC='$CC'" >> $LOGFILE
520    }
521    
522    # Guess possible config options for this host
523    find_possible_optfile()  {
524    
525        echo >> $LOGFILE
526        echo "running: find_possible_optfile()" >> $LOGFILE
527        tmp1=`uname`"_"`uname -m`
528        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
529        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
530        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
531        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
532        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
533        PLATFORM=$tmp3
534        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
535        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
536        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
537    
538        #================================================================
539        #  look for possible FORTRAN compilers
540        echo "  look for possible FORTRAN compilers" >> $LOGFILE
541        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
542        p_FC=
543        rm -f ./genmake_hello.f
544        cat >> genmake_hello.f <<EOF
545        program hello        program hello
546        do i=1,3        do i=1,3
547          print *, 'hello world : ', i          print *, 'hello world : ', i
548        enddo        enddo
549        end        end
550  EOF  EOF
551          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
552            COMM="$f -o genmake_hello genmake_hello.f"
553            echo $COMM >> $LOGFILE
554            $COMM >> $LOGFILE 2>&1
555          RETVAL=$?          RETVAL=$?
556          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
557              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
558                p_FC="$p_FC $f"
559          fi          fi
560      done      done
561      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
562      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
563          cat 1>&2 <<EOF          cat 1>&2 <<EOF
564    
# Line 130  Error: No Fortran compilers were found i Line 566  Error: No Fortran compilers were found i
566    
567      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
568      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
569      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
570    
571  EOF  EOF
572          exit 1          exit 1
573      else      else
574          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
575      fi      fi
576    
577      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
578          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
579          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
580              OPTFILE=$p_OF          for i in $p_FC ; do
581              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
582              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
583              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
584                    break
585                fi
586            done
587        fi
588    
589        if test "x$OPTFILE" = x ; then
590            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
591            if test ! -r $OPTFILE ; then
592                 echo "  I looked for the file "$OPTFILE" but did not find it"
593          fi          fi
594      done      fi
595    
596      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
597          cat 1>&2 <<EOF          cat 1>&2 <<EOF
598    
# Line 166  Error: No options file was found in:  $R Line 608  Error: No options file was found in:  $R
608  EOF  EOF
609          exit 1          exit 1
610      fi      fi
611        }
612  #     # look for possible MPI libraries  
613  #     mpi_libs=  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
614  #     mpi_fort=`which mpif77 2>/dev/null`  #  checking for additional included headers (in case of chain of included header)
615  #     RETVAL=$?  mpi_headers_do_local_copy() {
616  #     if test "x${RETVAL}" = x0 ; then  
617  #       cat >>test.f <<EOF      dBug=0
618  #       PROGRAM HELLO      rm -rf ./mpi_headers
619  #       DO 10, I=1,10      if test -d $MPIINCLUDEDIR ; then
620  #       PRINT *,'Hello World'  
621  #    10 CONTINUE          #----- check for additional headers (chain of included headers)
622  #       STOP          echo -n '  Check MPI headers ... '
623  #       END          listIni=$MPI_HEADER_FILES
624  # EOF          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
625  #       eval "$mpi_fort -showme test.f > out"          outp=$?
626  #       RETVAL=$?          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
627  #       if test "x${RETVAL}" = x0 ; then          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
628  #           a=`cat out`          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
629  #           for i in $a ; do  
630  #               case $i in          doCheck=1 ; list2copy='' ; list2check=$listIni
631  #                   -*)          while test $doCheck = 1 ; do
632  #                       mpi_libs="$mpi_libs $i" ;;            newList=''
633  #               esac            for i in $list2check ; do
634  #           done              if test -f $MPIINCLUDEDIR/$i ; then
635  #           echo "The MPI libs appear to be:"                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
636  #           echo "  "$mpi_libs                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
637  #       fi                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
638  #       rm -f test.f out                for j in $newInc ; do
639  #     fi                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
640                    outp=$?
641                    if test $outp != 0 ; then
642                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
643                      newList="$newList $j"
644                    fi
645                  done
646                  if test $dBug = 1 ; then echo "" ; fi
647                fi
648              done
649              if test "x$newList" = x ; then doCheck=0
650              else list2check=$newList ; list2copy="$list2copy $newList"
651              fi
652            done
653            list2copy="$MPI_HEADER_FILES $list2copy"
654            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
655    
656            #----- create local mpi_headers dir if we have files to copy
657            mkListInc=`echo $list2copy | wc -w`
658            if test $mkListInc != 0 ; then
659              echo 'create local "./mpi_headers" dir'
660              mkdir -p ./mpi_headers
661              INCLUDES="-I./mpi_headers $INCLUDES"
662              mkListInc=1
663            fi
664            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
665    
666            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
667            for i in $list2copy ; do
668              if test -f $MPIINCLUDEDIR/$i ; then
669                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
670                if test $i = 'mpif.h' ; then
671                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
672                fi
673                if test $mkListInc = 2 ; then
674                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
675                fi
676                if test $mkListInc = 1 ; then
677                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
678                fi
679              fi
680            done
681        else
682            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
683            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
684    #       exit -1
685        fi
686  }  }
687    
688  #  Parse the package dependency information  #  Parse the package dependency information
# Line 204  get_pdepend_list()  { Line 691  get_pdepend_list()  {
691      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
692      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
693      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
694          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
695          > ./.pd_tmp          > ./.pd_tmp
696      source ./.pd_tmp      RETVAL=$?
697        if test ! "x${RETVAL}" = x0 ; then
698          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
699          exit 1
700        fi
701        . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
703    }
704    
705    #  Build a CPP macro to automate calling C routines from FORTRAN
706    get_fortran_c_namemangling()  {
707    
708        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709        if test ! "x$FC_NAMEMANGLE" = x ; then
710            return 0
711        fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714        default_nm="#define FC_NAMEMANGLE(X) X ## _"
715    
716        cat > genmake_test.c <<EOF
717    void tcall( char * string ) { tsub( string ); }
718    EOF
719        COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722        RETVAL=$?
723        if test "x$RETVAL" != x0 ; then
724            FC_NAMEMANGLE=$default_nm
725            cat <<EOF>> $LOGFILE
726    
727     WARNING: C test compile fails
728     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730    EOF
731            return 1
732        fi
733        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
734        RETVAL=$?
735        if test "x$RETVAL" != x0 ; then
736            FC_NAMEMANGLE=$default_nm
737            cat <<EOF>> $LOGFILE
738    
739     WARNING: The "nm" command failed.
740     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742    EOF
743            return 1
744        fi
745        cat > genmake_tcomp.$FS <<EOF
746          subroutine tcall( string )
747          character*(*) string
748          call tsub( string )
749          end
750    EOF
751        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754        RETVAL=$?
755        if test "x$RETVAL" != x0 ; then
756            FC_NAMEMANGLE=$default_nm
757            cat <<EOF>> $LOGFILE
758    
759     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762    EOF
763            return 1
764        fi
765        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
766        RETVAL=$?
767        if test "x$RETVAL" != x0 ; then
768            FC_NAMEMANGLE=$default_nm
769            cat <<EOF>> $LOGFILE
770    
771     WARNING: The "nm" command failed.
772     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774    EOF
775            return 1
776        fi
777    
778        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
779        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
780        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
781        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
782    
783        nmangle="X"
784        if test "x$c_a" != "x$f_a" ; then
785            comm="echo x$f_a | sed -e 's|x$c_a||'"
786            a=`eval $comm`
787            nmangle="$a ## $nmangle"
788        fi
789        if test "x$c_b" != "x$f_b" ; then
790            comm="echo x$f_b | sed -e 's|x$c_b||'"
791            b=`eval $comm`
792            nmangle="$nmangle ## $b"
793        fi
794    
795        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
796    
797      echo -n "PNAME = "${}      #  cleanup the testing files
798        rm -f genmake_tcomp.* genmake_test.*
799    
800        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801  }  }
802    
803    check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806        get_fortran_c_namemangling
807        cat <<EOF > genmake_tc_1.c
808    $FC_NAMEMANGLE
809    #include <stdio.h>
810    #include <stdlib.h>
811    #include <unistd.h>
812    #include <assert.h>
813    #include <sys/time.h>
814    void FC_NAMEMANGLE(cloc) ( double *curtim )
815    {
816     struct timeval tv1;
817     gettimeofday(&tv1 , (void *)NULL );
818     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
819     *curtim = *curtim/1.E6;
820    }
821    EOF
822        COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> $LOGFILE
824        $COMM >> $LOGFILE 2>&1
825        RET_C=$?
826        cat <<EOF > genmake_tc_2.$FS
827          program hello
828          REAL*8 wtime
829          external cloc
830          call cloc(wtime)
831          print *," HELLO WORLD", wtime
832          end
833    EOF
834        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> $LOGFILE
836        $COMM >> $LOGFILE 2>&1
837        RET_F=$?
838        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839        RETVAL=$?
840        if test "x$RETVAL" = x0 ; then
841            HAVE_CLOC=t
842        fi
843        rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845    }
846    
847  #  Explain usage  check_HAVE_SIGREG()  {
848  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
849      echo          return
850      echo "Usage: "$0" [OPTIONS]"      fi
851      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
852      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
854      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
855      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
856      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
857      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
858      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
859      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
860      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
861      echo "    -make NAME | -m NAME"  
862      echo "      --make=NAME | -m=NAME"  int * ip;
863      echo "    -makefile NAME | -mf NAME"  
864      echo "      --makefile=NAME | -mf=NAME"  static void killhandler(
865      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
866      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  {
867      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      *ip = *ip + 1;
868      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      return;
869      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  }
870      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
871      echo "    -disable NAME | --disable NAME"  void FC_NAMEMANGLE(sigreg) (int * aip)
872      echo "      -disable=NAME | --disable=NAME"  {
873      echo "    -enable NAME | --enable NAME"      struct sigaction s;
874      echo "      -enable=NAME | --enable=NAME"      ip = aip;
875      echo "    -standarddirs NAME | --standarddirs NAME"      s.sa_flags = SA_SIGINFO;
876      echo "      -standarddirs=NAME | --standarddirs=NAME"      s.sa_sigaction = (void *)killhandler;
877      echo "    -noopt NAME | --noopt NAME"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
878      echo "      -noopt=NAME | --noopt=NAME"          printf("Sigaction returned error = %d\n", errno);
879  #    echo "    -cpp NAME | --cpp NAME"          exit(0);
880  #    echo "      -cpp=NAME | --cpp=NAME"      }
881      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      return;
882      echo "      -fc=NAME | --fc=NAME"  }
883      echo "    -[no]ieee | --[no]ieee"  EOF
884      echo "    -[no]mpi | --[no]mpi"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
885      echo "    -[no]jam | --[no]jam"      echo $COMM >> $LOGFILE
886      echo      $COMM >> $LOGFILE 2>&1
887      echo "  and NAME is a string such as:"      RET_C=$?
888      echo      cat <<EOF > genmake_tc_2.$FS
889      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        program hello
890      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        integer anint
891      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        common /iv/ anint
892      echo        external sigreg
893      echo "  which, depending upon your shell, may need to be single-quoted"        call sigreg(anint)
894      echo "  if it contains spaces, dashes, or other special characters."        end
895      exit 1  EOF
896        cat genmake_tc_2.$FS >> $LOGFILE
897        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898        echo $COMM >> $LOGFILE
899        $COMM >> $LOGFILE 2>&1
900        RETVAL=$?
901        if test "x$RETVAL" = x0 ; then
902            HAVE_SIGREG=t
903        fi
904        rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906  }  }
907    
908  #eh3 # This is the generic configuration.  check_HAVE_SETRLSTK()  {
909  #eh3 set LN         = ( 'ln -s' )      if test ! "x$HAVE_SETRLSTK" = x ; then
910  #eh3 set CPP        = ( '/lib/cpp -P' )          return
911  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      fi
912  #eh3 set KPP        = (  )      echo >> $LOGFILE
913  #eh3 set FC         = ( 'f77' )      echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914  #eh3 set LINK       = $FC      get_fortran_c_namemangling
915  #eh3 set MAKEDEPEND = ( 'makedepend' )      cat <<EOF > genmake_tc_1.c
916  #eh3 set INCLUDES   = ( -I. )  $FC_NAMEMANGLE
917  #eh3 set FFLAGS     = (  )  #include <sys/time.h>
918  #eh3 set FOPTIM     = (  )  #include <sys/resource.h>
919  #eh3 set CFLAGS     = (  )  #include <unistd.h>
920  #eh3 set KFLAGS1    = (  )  void FC_NAMEMANGLE(setrlstk) ()
921  #eh3 set KFLAGS2    = (  )  {
922  #eh3 set LIBS       = (  )      struct rlimit rls;
923  #eh3 set KPPFILES   = (  )      rls.rlim_cur = RLIM_INFINITY;
924  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      rls.rlim_max = RLIM_INFINITY;
925  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      setrlimit(RLIMIT_STACK, &rls);
926        return;
927    }
928    EOF
929        COMM="$CC $CFLAGS -c genmake_tc_1.c"
930        echo $COMM >> $LOGFILE
931        $COMM >> $LOGFILE 2>&1
932        RET_C=$?
933        cat <<EOF > genmake_tc_2.$FS
934          program hello
935          external setrlstk
936          call setrlstk()
937          end
938    EOF
939        cat genmake_tc_2.$FS >> $LOGFILE
940        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941        echo $COMM >> $LOGFILE
942        $COMM >> $LOGFILE 2>&1
943        RETVAL=$?
944        if test "x$RETVAL" = x0 ; then
945            HAVE_SETRLSTK=t
946        fi
947        rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949    }
950    
951    check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954        get_fortran_c_namemangling
955        cat <<EOF > genmake_tc_1.c
956    $FC_NAMEMANGLE
957    #include <stdio.h>
958    #include <stdlib.h>
959    #include <unistd.h>
960    #include <sys/stat.h>
961    #include <sys/types.h>
962    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
963    {
964        char name[512];
965        struct stat astat;
966    
967        name[0] = 'a'; name[1] = '\0';
968        if (! stat(name, &astat))
969            *nbyte = (int)(astat.st_size);
970        else
971            *nbyte = -1;
972    }
973    EOF
974        COMM="$CC $CFLAGS -c genmake_tc_1.c"
975        echo $COMM >> $LOGFILE
976        $COMM >> genmake_tc.log 2>&1
977        RET_C=$?
978        cat <<EOF > genmake_tc_2.$FS
979          program hello
980          integer nbyte
981          call tfsize(nbyte)
982          print *," HELLO WORLD", nbyte
983          end
984    EOF
985        cat genmake_tc_2.$FS >> $LOGFILE
986        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987        echo $COMM >> $LOGFILE
988        $COMM >> genmake_tc.log 2>&1
989        RETVAL=$?
990        if test "x$RETVAL" = x0 ; then
991            HAVE_STAT=t
992        fi
993        rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995    }
996    
997    check_netcdf_libs()  {
998        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999            return
1000        fi
1001        echo >> $LOGFILE
1002        echo "running: check_netcdf_libs()" >> $LOGFILE
1003        cat <<EOF > genmake_tnc.F
1004          program fgennc
1005    #include "netcdf.inc"
1006    EOF
1007       #if test ! "x$MPI" = x ; then
1008       #    echo '#include "mpif.h"' >> genmake_tnc.F
1009       #fi
1010        cat <<EOF >> genmake_tnc.F
1011          integer iret, ncid, xid
1012          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1013          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014          iret = nf_def_dim(ncid, 'X', 11, xid)
1015          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1016          iret = nf_close(ncid)
1017          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018          end
1019    EOF
1020        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021        cat genmake_tnc.F >> genmake_tnc.log
1022        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023        RET_CPP=f
1024        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025        echo "$COMM" >> genmake_tnc.log
1026        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1027        if test "x$RET_CPP" = xf ; then
1028            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1029                >> genmake_tnc.log
1030            echo "    Please check that \$INCLUDES is properly set." \
1031                >> genmake_tnc.log
1032        fi
1033        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1034        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1035        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037        RET_COMPILE=$?
1038        cat genmake_tnc.log >> $LOGFILE
1039    
1040        #EH3  Remove test program execution for machines that either disallow
1041        #EH3  execution or cannot support it (eg. cross-compilers)
1042        #EH3
1043        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1044        #EH3 RETVAL=$?
1045        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1046    
1047        if test "x$RET_COMPILE" = x0 ; then
1048            HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050        else
1051            # try again with "-lnetcdf" added to the libs
1052            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1056            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1057                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059            RET_COMPILE=$?
1060            echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062            if test "x$RET_COMPILE" = x0 ; then
1063                LIBS="$LIBS -lnetcdf"
1064                HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066            else
1067            # try again with "-lnetcdff" added to the libs
1068                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1072                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1073                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075                RET_COMPILE=$?
1076                echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078                if test "x$RET_COMPILE" = x0 ; then
1079                    LIBS="$LIBS -lnetcdff -lnetcdf"
1080                    HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082                fi
1083            fi
1084        fi
1085        rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087    }
1088    
1089    check_lapack_libs()  {
1090        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091        echo >> $LOGFILE
1092        echo "running: check_lapack_libs()" >> $LOGFILE
1093        cat <<EOF > genmake_tla.F
1094          program fgenla
1095          integer info
1096          integer ipiv( 2 )
1097          double precision ab( 4, 2 ), b( 2 )
1098          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099          data b / 1., 1. /
1100          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101          IF (info .NE. 0) write(*,*) 'Error:', info
1102          write(*,*) b
1103          end
1104    EOF
1105        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106        cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188    }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228    }
1229    
1230    ###############################################################################
1231    #   Sequential part of script starts here
1232    ###############################################################################
1233    
1234  #  Set defaults here  #  Set defaults here
1235  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 290  PLATFORM= Line 1238  PLATFORM=
1238  LN=  LN=
1239  S64=  S64=
1240  KPP=  KPP=
1241  FC=  #FC=
1242    #CC=gcc
1243    #CPP=
1244  LINK=  LINK=
1245  DEFINES="-DWORDLENGTH=4"  DEFINES=
1246  PACKAGES=  PACKAGES=
1247  ENABLE=  ENABLE=
1248  DISABLE=  DISABLE=
1249  MAKEFILE=  # MAKEFILE=
1250  MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  DUMPSTATE=t  PKG_GROUPS=
1253  PDEFAULT=  DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258    FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
1265    #LDADD=
1266  LIBS=  LIBS=
1267  KPPFILES=  KPPFILES=
1268  NOOPTFILES=  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270    MPI=
1271    MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275    TS=
1276    PAPIS=
1277    PCLS=
1278    FOOLAD=
1279    PAPI=
1280    PCL=
1281    HPMT=
1282    GSL=
1283    DEVEL=
1284    HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289    # DEFINES checked by test compilation or command-line
1290    HAVE_SYSTEM=
1291    HAVE_FDATE=
1292    FC_NAMEMANGLE=
1293    HAVE_CLOC=
1294    # HAVE_SETRLSTK=
1295    HAVE_STAT=
1296    HAVE_NETCDF=
1297    HAVE_ETIME=
1298    IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
1304  SOURCEDIRS=  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311    G2ARGS=
1312    BASH=
1313  PWD=`pwd`  PWD=`pwd`
1314  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1315  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1316  THISHOSTNAME=`hostname`  EMBED_SRC=
1317    THISHOST=`hostname`
1318  THISCWD=`pwd`  THISCWD=`pwd`
1319  THISDATE=`date`  THISDATE=`date`
1320    THISUSER=`echo $USER`
1321    THISVER=
1322  MACHINE=`uname -a`  MACHINE=`uname -a`
1323  EXECUTABLE=  EXECUTABLE=
1324  EXEHOOK=  EXEHOOK=
1325  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1326  IEEE=  IEEE=
1327  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1328      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1329  fi  fi
1330    FS=
1331    FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337  TAF=  TAF=
1338  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1339  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 348  FTL_TAF_FLAGS= Line 1345  FTL_TAF_FLAGS=
1345  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1346  TAMC_EXTRA=  TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1354  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1359  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373    cat <<EOF
1374    
1375    GENMAKE :
1376    
1377    A program for GENerating MAKEfiles for the MITgcm project.
1378       For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380       http://mitgcm.org/public/docs.html
1381    
1382    EOF
1383    
1384    LOGFILE="genmake.log"
1385    #- clean-up previous genmake logfiles:
1386    rm -f genmake_state genmake_*optfile $LOGFILE
1387    
 echo  
1388  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1389    
1390  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1391  #parse_options  #parse_options
1392  ac_prev=  ac_prev=
1393  for ac_option ; do  for ac_option in "$@" ; do
1394    
1395        G2ARGS="$G2ARGS \"$ac_option\""
1396    
1397      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1398      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 406  for ac_option ; do Line 1400  for ac_option ; do
1400          ac_prev=          ac_prev=
1401          continue          continue
1402      fi      fi
1403        
1404      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405        
1406      case $ac_option in      case $ac_option in
1407            
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410            
1411          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1412              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1413          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1414              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1415          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1416              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1417            
1418          -adoptfile | --adoptfile | -ad | --ad)          -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422            -adoptfile | --adoptfile | -adof | --adof)
1423              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1424          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1425              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1426            
1427          -pdepend | --pdepend)          -pdepend | --pdepend)
1428              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1429          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1430              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1431            
1432          -pdefault | --pdefault)          -pgroups | --pgroups)
1433              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1434          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1435              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1436            
1437          -make | --make | -m | --m)          -make | --make | -m | --m)
1438              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1439          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1440              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1441            
1442          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1443                ac_prev=BASH ;;
1444            -bash=* | --bash=*)
1445                BASH=$ac_optarg ;;
1446    
1447            -makedepend | --makedepend | -md | --md)
1448                ac_prev=MAKEDEPEND ;;
1449            -makedepend=* | --makedepend=* | -md=* | --md=*)
1450                MAKEDEPEND=$ac_optarg ;;
1451    
1452            -makefile | --makefile | -mf | --mf)
1453              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1454          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1455              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1456            
1457          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1458              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1459          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1460              PLATFORM=$ac_optarg ;;              echo
1461                        usage
1462                ;;
1463    
1464          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1465              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1466          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1467              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1468            
1469          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1470              ac_prev=MODS ;;              ac_prev=MODS ;;
1471          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1472              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1473            
1474          -disable | --disable)          -disable | --disable)
1475              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1476          -disable=* | --disable=*)          -disable=* | --disable=*)
1477              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1478            
1479          -enable | --enable)          -enable | --enable)
1480              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1481          -enable=* | --enable=*)          -enable=* | --enable=*)
1482              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1483            
1484          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1485              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1486          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1487              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1488    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1489  #           -cpp | --cpp)  #           -cpp | --cpp)
1490  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1491  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1492  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1493                
1494            -cc | --cc)
1495                ac_prev=CC ;;
1496            -cc=* | --cc=*)
1497                CC=$ac_optarg ;;
1498    
1499          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1500              ac_prev=FC ;;              ac_prev=FC ;;
1501          -fc=* | --fc=*)          -fc=* | --fc=*)
1502              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1503            
1504            -fs | --fs)
1505                ac_prev=FS ;;
1506            -fs=* | --fs=*)
1507                FS=$ac_optarg ;;
1508    
1509            -fs90 | --fs90)
1510                ac_prev=FS90 ;;
1511            -fs90=* | --fs90=*)
1512                FS90=$ac_optarg ;;
1513    
1514            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1515                USE_R4=true ;;
1516    
1517          -ieee | --ieee)          -ieee | --ieee)
1518              IEEE=true ;;              IEEE=true ;;
1519          -noieee | --noieee)          -noieee | --noieee)
1520              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1521                    -devel | --devel)
1522                IEEE=true ; DEVEL=true ;;
1523            -gsl | --gsl)
1524                GSL=true ;;
1525    
1526            -ts | --ts)
1527                TS=true ;;
1528            -papis | --papis)
1529                PAPIS=true ;;
1530            -pcls | --pcls)
1531                PCLS=true ;;
1532            -foolad | --foolad)
1533                FOOLAD=true ;;
1534            -papi | --papi)
1535                PAPI=true ;;
1536            -pcl | --pcl)
1537                PCL=true ;;
1538            -hpmt | --hpmt)
1539                HPMT=true ;;
1540    
1541          -mpi | --mpi)          -mpi | --mpi)
1542              MPI=true ;;              MPI=true ;;
1543          -nompi | --nompi)          -mpi=* | --mpi=*)
1544              MPI= ;;              MPIPATH=$ac_optarg
1545                        MPI=true ;;
1546          -jam | --jam)  
1547              JAM=1 ;;          -omp | --omp)
1548          -nojam | --nojam)              OMP=true ;;
1549              JAM=0 ;;          -omp=* | --omp=*)
1550                        OMPFLAG=$ac_optarg
1551                OMP=true ;;
1552    
1553          -ds | --ds)          -ds | --ds)
1554              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1555            
1556            -extra_flag | --extra_flag)
1557                ac_prev=FEXTRAFLAGS ;;
1558            -extra_flag=* | --extra_flag=*)
1559                FEXTRAFLAGS=$ac_optarg ;;
1560    
1561          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1562              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1563          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 519  for ac_option ; do Line 1568  for ac_option ; do
1568          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1569              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1570    
1571            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1572                IGNORE_TIME="-DIGNORE_TIME" ;;
1573    
1574            -es | --es | -embed-source | --embed-source)
1575                EMBED_SRC=t ;;
1576    
1577          -*)          -*)
1578              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582          *)          *)
1583              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1584              usage              usage
1585              ;;              ;;
1586            
1587      esac      esac
1588        
1589  done  done
1590    
1591    #TMP=./genmk_$$
1592    #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_${USER}_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599    fi
1600    rm -f $TMP
1601    #echo "  temp files: $TMP.*"
1602    
1603    printf "  getting local config information:  "
1604    if test -f $gm_local ; then
1605        echo "using $gm_local"
1606        . $gm_local
1607    else
1608        echo "none found"
1609    fi
1610    
1611  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1612      echo      echo
1613      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1614      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1615      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1616      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1617        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1618        echo "WARNING: ignore \"./.genmakerc\" and continue."
1619      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1620  fi  fi
1621    
1622    #  Find the MITgcm ${ROOTDIR}
1623  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1624      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1625        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1626          ROOTDIR=".."          ROOTDIR=".."
1627      else      else
1628          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1629              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1630                  ROOTDIR=$d                  ROOTDIR=$d
1631                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1632                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1633                  break                  break
1634              fi              fi
1635          done          done
# Line 570  if test ! -d ${ROOTDIR} ; then Line 1646  if test ! -d ${ROOTDIR} ; then
1646      exit 1      exit 1
1647  fi  fi
1648    
1649  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1650    version_file="${ROOTDIR}/doc/tag-index"
1651    if test -f $version_file ; then
1652        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1653    #-  remove ./BUILD_INFO.h file if older than version_file
1654        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1655            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1656            rm -f ./BUILD_INFO.h
1657        fi
1658    fi
1659    
1660    if test "x$MAKEFILE" = x ; then
1661        MAKEFILE="Makefile"
1662    fi
1663    
1664    echo "  getting OPTFILE information:"
1665  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1666      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1667          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1668          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1669          find_possible_configs          find_possible_optfile
1670      else      else
1671          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1672      fi      fi
# Line 583  fi Line 1674  fi
1674  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1675      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1676          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1677          source "$OPTFILE"          . "$OPTFILE"
1678          RETVAL=$?          RETVAL=$?
1679          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1680              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1681              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1682              exit 1              exit 1
1683          fi          fi
1684          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1685              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1686          fi          fi
1687      else      else
# Line 599  if test "x$OPTFILE" != xNONE ; then Line 1690  if test "x$OPTFILE" != xNONE ; then
1690      fi      fi
1691  fi  fi
1692    
1693  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1694  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1695      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699      else      else
1700          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701      fi      fi
1702  fi  fi
1703  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1704      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1705          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1706          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1707          RETVAL=$?          RETVAL=$?
1708          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1709              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1710              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1711              exit 1              exit 1
1712          fi          fi
1713          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1714              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1715          fi          fi
1716      else      else
# Line 626  if test "x${AD_OPTFILE}" != xNONE ; then Line 1719  if test "x${AD_OPTFILE}" != xNONE ; then
1719      fi      fi
1720  fi  fi
1721    
1722  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1723  #  and abort!  #  Set default values if not set by the optfile
1724    #
1725    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1726    #  either set defaults or complain and abort!
1727    if test ! "x$BASH" = x ; then
1728        # add a trailing space so that it works within the Makefile syntax (see below)
1729        BASH="$BASH "
1730    fi
1731  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1732      cat <<EOF 1>&2      cat <<EOF 1>&2
1733    
# Line 638  Error: no Fortran compiler: please speci Line 1738  Error: no Fortran compiler: please speci
1738  EOF  EOF
1739      exit 1      exit 1
1740  fi  fi
1741    if test "x$GET_FC_VERSION" != x ; then
1742      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1743      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1744      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1745      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1746      if test -s genmake_fc_vers1 ; then
1747        cat genmake_fc_vers1 >> $LOGFILE
1748      else
1749        cat genmake_fc_vers2 >> $LOGFILE
1750      fi
1751      echo "<-- compiler version ----" >> $LOGFILE
1752      rm -f genmake_fc_vers1 genmake_fc_vers2
1753    fi
1754    
1755    if test "x$CC" = x ; then
1756        look_for_C_compilers
1757    fi
1758    
1759  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1760      LINK=$FC      LINK=$FC
1761  fi  fi
1762    if test "x$MAKE" = x ; then
1763        MAKE="make"
1764    fi
1765  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1766      CPP="cpp"      CPP="cpp -traditional -P"
1767  fi  fi
1768    #EH3 === UGLY ===
1769    #  The following is an ugly little hack to check for $CPP in /lib/ and
1770    #  it should eventually be replaced with a more general function that
1771    #  searches a combo of the user's path and a list of "usual suspects"
1772    #  to find the correct location for binaries such as $CPP.
1773    for i in " " "/lib/" ; do
1774        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1775    done
1776    #EH3 === UGLY ===
1777  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1778  RETVAL=$?  RETVAL=$?
1779  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 653  Error: C pre-processor "$CPP" failed the Line 1783  Error: C pre-processor "$CPP" failed the
1783    
1784    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1785    2) the "./genmake_local" file    2) the "./genmake_local" file
1786      3) with the CPP environment variable
1787    
1788  EOF  EOF
1789      exit 1      exit 1
1790  else  else
1791      rm -f test_cpp      rm -f test_cpp
1792  fi  fi
1793  if test "x$MAKEDEPEND" = x ; then  
1794      MAKEDEPEND=makedepend  look_for_makedepend
1795    
1796    #  Check that soft-link command is set and usable
1797    if test "x$LN" = x ; then
1798        LN="ln -s"
1799    fi
1800    echo "test" > genmake_test_ln
1801    $LN genmake_test_ln genmake_tlink
1802    RETVAL=$?
1803    if test "x$RETVAL" != x0 ; then
1804        cat <<EOF 1>&2
1805    
1806    Error: The command "$LN" failed -- please specify a working soft-link
1807      command in the optfile.
1808    
1809    EOF
1810        exit 1
1811    fi
1812    test -L genmake_tlink > /dev/null 2>&1
1813    RETVAL=$?
1814    if test "x$RETVAL" = x0 ; then
1815        HAVE_TEST_L=t
1816    fi
1817    rm -f genmake_test_ln genmake_tlink
1818    
1819    #  Check for broken *.F/*.f handling and fix if possible
1820    check_for_broken_Ff
1821    
1822    if test ! "x$MPI" = x ; then
1823          echo "  Turning on MPI cpp macros"
1824          DEFINES="$DEFINES -DALLOW_USE_MPI"
1825    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1826    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1827    fi
1828    if test ! "x$OMP" = x ; then
1829          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1830          FFLAGS="$FFLAGS $OMPFLAG"
1831          F90FLAGS="$F90FLAGS $OMPFLAG"
1832          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1833    fi
1834    
1835    if test ! "x$USE_R4" = x ; then
1836          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1837          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1838    fi
1839    
1840    if test ! "x$TS" = x ; then
1841          echo "  Turning on timing per timestep"
1842          if test ! "x$FOOLAD" = x ; then
1843                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1844          else
1845                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1846          fi
1847          PACKAGES="$PACKAGES showflops"
1848    fi
1849    if test ! "x$PAPIS" = x ; then
1850          echo "  Turning on PAPI flop summary per timestep"
1851          echo "  Please make sure PAPIINC, PAPILIB are defined"
1852          if test ! "x$FOOLAD" = x ; then
1853                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1854          else
1855                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1856          fi
1857          INCLUDES="$INCLUDES $PAPIINC"
1858          LIBS="$LIBS $PAPILIB"
1859          PACKAGES="$PACKAGES showflops"
1860    fi
1861    if test ! "x$PCLS" = x ; then
1862          echo "  Turning on PCL counter summary per timestep"
1863          echo "  Please make sure PCLINC, PCLLIB are defined"
1864          if test ! "x$FOOLAD" = x ; then
1865                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1866          else
1867                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1868          fi
1869          INCLUDES="$INCLUDES $PCLINC"
1870          LIBS="$LIBS $PCLLIB"
1871          PACKAGES="$PACKAGES showflops"
1872    fi
1873    if test ! "x$PAPI" = x ; then
1874          if test ! "x$PAPIS" = x ; then
1875              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1876              echo "  Sticking with PAPI flop summary per timestep!"
1877          else
1878              echo "  Turning on performance analysis with PAPI"
1879              echo "  Please make sure PAPIINC, PAPILIB are defined"
1880              DEFINES="$DEFINES -DUSE_PAPI"
1881              INCLUDES="$INCLUDES $PAPIINC"
1882              LIBS="$LIBS $PAPILIB"
1883          fi
1884    fi
1885    if test ! "x$PCL" = x ; then
1886          if test ! "x$PCLS" = x ; then
1887              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1888              echo "  Sticking with PCL flop summary per timestep!"
1889          else
1890              echo "  Turning on performance analysis with PCL"
1891              echo "  Please make sure PCLINC, PCLLIB are defined"
1892              DEFINES="$DEFINES -DUSE_PCL"
1893              INCLUDES="$INCLUDES $PCLINC"
1894              LIBS="$LIBS $PCLLIB"
1895          fi
1896    fi
1897    if test ! "x$HPMT" = x ; then
1898          if test ! "x$PAPI" = x ; then
1899              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1900              echo "  Sticking with PAPI!"
1901          else
1902            if test ! "x$PCL" = x ; then
1903              echo "  PCL and the HPM Toolkit cannot co-exist!"
1904              echo "  Sticking with PCL!"
1905            else
1906              echo "  Turning on performance analysis with the HPM Toolkit"
1907              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1908              DEFINES="$DEFINES -DUSE_LIBHPM"
1909              INCLUDES="$INCLUDES $HPMTINC"
1910              LIBS="$LIBS $HPMTLIB"
1911            fi
1912          fi
1913    fi
1914    if test ! "x$GSL" = x ; then
1915          echo "  Turning on use of GSL to control floating point calculations"
1916          echo "  Please make sure GSLINC, GSLLIB are defined"
1917          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1918          INCLUDES="$INCLUDES $GSLINC"
1919          LIBS="$LIBS $GSLLIB"
1920    fi
1921    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1922    if test ! "x$USE_EXTENDED_SRC" = x ; then
1923          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1924          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1925    fi
1926    
1927    printf "\n===  Checking system libraries  ===\n"
1928    printf "  Do we have the system() command using $FC...  "
1929    cat > genmake_tcomp.$FS <<EOF
1930          program hello
1931          call system('echo hi')
1932          end
1933    EOF
1934    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1935    RETVAL=$?
1936    if test "x$RETVAL" = x0 ; then
1937        HAVE_SYSTEM=t
1938        DEFINES="$DEFINES -DHAVE_SYSTEM"
1939        echo "yes"
1940    else
1941        HAVE_SYSTEM=
1942        echo "no"
1943    fi
1944    rm -f genmake_tcomp*
1945    
1946    printf "  Do we have the fdate() command using $FC...  "
1947    cat > genmake_tcomp.$FS <<EOF
1948          program hello
1949          CHARACTER*(128) string
1950          string = ' '
1951          call fdate( string )
1952          print *, string
1953          end
1954    EOF
1955    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1956    RETVAL=$?
1957    if test "x$RETVAL" = x0 ; then
1958        HAVE_FDATE=t
1959        DEFINES="$DEFINES -DHAVE_FDATE"
1960        echo "yes"
1961    else
1962        HAVE_FDATE=
1963        echo "no"
1964    fi
1965    rm -f genmake_tcomp*
1966    
1967    printf "  Do we have the etime() command using $FC... "
1968    cat > genmake_tcomp_1.$FS <<EOF
1969          program hello
1970          REAL*4 actual, tarray(2)
1971          EXTERNAL ETIME
1972          REAL*4 ETIME
1973          actual = ETIME( tarray )
1974          print *, tarray
1975          end
1976    EOF
1977    $FC $FFLAGS -o genmake_tcomp_1 genmake_tcomp_1.$FS > genmake_tcomp.log 2>&1
1978    RETVAL=$?
1979    if test "x$RETVAL" = x0 ; then
1980        HAVE_ETIME='Fct'
1981        DEFINES="$DEFINES -DHAVE_ETIME_FCT"
1982        echo " yes (${HAVE_ETIME})"
1983    else
1984      cat > genmake_tcomp_2.$FS <<EOF
1985          program hello
1986          REAL*4 actual, tarray(2)
1987          actual = -999.
1988          call ETIME( tarray, actual )
1989          if ( actual.ge.0. ) then
1990            print *, 0, tarray, actual
1991          else
1992            print *, 1, tarray, actual
1993          endif
1994          end
1995    EOF
1996      $FC $FFLAGS -o genmake_tcomp_2 genmake_tcomp_2.$FS >> genmake_tcomp.log 2>&1
1997      RETVAL=$?
1998      if test "x$RETVAL" = x0 ; then
1999        echo -n 'c,'
2000        ./genmake_tcomp_2 > genmake_tcomp_2.out 2>&1
2001        RETVAL=$?
2002      fi
2003      if test "x$RETVAL" = x0 ; then
2004        echo -n 'r:'
2005        RETVAL=`cat genmake_tcomp_2.out | $AWK '{print $1}'`
2006      fi
2007      if test "x$RETVAL" = x0 ; then
2008        HAVE_ETIME='SbR'
2009        DEFINES="$DEFINES -DHAVE_ETIME_SBR"
2010        echo " yes (${HAVE_ETIME})"
2011      else
2012        HAVE_ETIME=
2013        echo " no"
2014      fi
2015    fi
2016    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2017    rm -f genmake_tcomp*
2018    
2019    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
2020    check_HAVE_CLOC
2021    if test "x$HAVE_CLOC" != x ; then
2022        DEFINES="$DEFINES -DHAVE_CLOC"
2023        echo "yes"
2024    else
2025        echo "no"
2026        if test "x$EMBED_SRC" = xt ; then
2027            echo "    WARNING: you requested file embedding but it has"
2028            echo "      been disabled since C code cannot be called"
2029            EMBED_SRC=
2030        fi
2031    fi
2032    rm -f genmake_t*
2033    
2034    printf "  Can we unlimit the stack size using $FC...  "
2035    check_HAVE_SETRLSTK
2036    if test "x$HAVE_SETRLSTK" = xt ; then
2037        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2038        echo "yes"
2039    else
2040        echo "no"
2041    fi
2042    rm -f genmake_t*
2043    
2044    printf "  Can we register a signal handler using $FC...  "
2045    check_HAVE_SIGREG
2046    if test "x$HAVE_SIGREG" = xt ; then
2047        DEFINES="$DEFINES -DHAVE_SIGREG"
2048        echo "yes"
2049    else
2050        echo "no"
2051    fi
2052    rm -f genmake_t*
2053    
2054    printf "  Can we use stat() through C calls...  "
2055    check_HAVE_STAT
2056    if test "x$HAVE_STAT" != x ; then
2057        DEFINES="$DEFINES -DHAVE_STAT"
2058        echo "yes"
2059    else
2060        echo "no"
2061    fi
2062    rm -f genmake_t*
2063    
2064    printf "  Can we create NetCDF-enabled binaries...  "
2065    check_netcdf_libs
2066    if test "x$HAVE_NETCDF" != x ; then
2067        DEFINES="$DEFINES -DHAVE_NETCDF"
2068        echo "yes"
2069    else
2070        echo "no"
2071    fi
2072    
2073    printf "  Can we create LAPACK-enabled binaries...  "
2074    check_lapack_libs
2075    if test "x$HAVE_LAPACK" != x ; then
2076        DEFINES="$DEFINES -DHAVE_LAPACK"
2077        echo "yes"
2078    else
2079        echo "no"
2080    fi
2081    
2082    printf "  Can we call FLUSH intrinsic subroutine...  "
2083    check_HAVE_FLUSH
2084    if test "x$HAVE_FLUSH" = xt ; then
2085        DEFINES="$DEFINES -DHAVE_FLUSH"
2086        echo "yes"
2087    else
2088        echo "no"
2089    fi
2090    
2091    DEFINES="$DEFINES $IGNORE_TIME"
2092    if test "x$EMBED_SRC" = xt ; then
2093        build_embed_encode
2094    fi
2095    if test "x$EMBED_SRC" = xt ; then
2096        ENABLE="$ENABLE embed_files"
2097    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2098  fi  fi
2099    
2100  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2101  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2102  for d in $MODS ; do  for d in $MODS ; do
2103      if test ! -d $d ; then      if test ! -d $d ; then
2104          echo          echo
2105          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2106          exit 1          exit 1
2107      else      else
2108          echo -n " $d"          printf "$d "
2109          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2110          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2111      fi      fi
2112  done  done
2113  echo  echo
2114    
2115  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2116      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2117  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2118    
2119  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2120      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2121        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2122          EXEDIR=../exe          EXEDIR=../exe
2123      else      else
2124          EXEDIR=.          EXEDIR=.
# Line 701  if test "x${TOOLSDIR}" = x ; then Line 2133  if test "x${TOOLSDIR}" = x ; then
2133      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2134  fi  fi
2135  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2136      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2137      exit 1      exit 1
2138  fi  fi
2139  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2140      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2141        RETVAL=$?
2142        if test "x${RETVAL}" = x0 ; then
2143            S64='$(TOOLSDIR)/set64bitConst.sh'
2144        else
2145            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2146            RETVAL=$?
2147            if test "x${RETVAL}" = x0 ; then
2148                S64='$(TOOLSDIR)/set64bitConst.csh'
2149            else
2150                cat <<EOF
2151    
2152    ERROR: neither of the two default scripts:
2153    
2154        ${TOOLSDIR}/set64bitConst.sh
2155        ${TOOLSDIR}/set64bitConst.csh
2156    
2157      are working so please check paths or specify (with \$S64) a
2158      working version of this script.
2159    
2160    EOF
2161                exit 1
2162            fi
2163        fi
2164  fi  fi
2165    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2166    
2167  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2168    
2169    #  Set Standard Code Directories:
2170    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2171        STANDARDDIRS="eesupp model"
2172    fi
2173    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2174    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2175    ckM=$?
2176    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2177    ckE=$?
2178    if test $ckM = 0 -a $ckE = 1 ; then
2179        STANDARDDIRS="$STANDARDDIRS eesupp"
2180    fi
2181    
2182  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2183  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2184  #  they appear as regular source code  #  they appear as regular source code
2185  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2186      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2187      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2188        ) > make_eesupp.errors 2>&1
2189      RETVAL=$?      RETVAL=$?
2190      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2191          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2192      else      else
2193          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2194          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2195          exit 1          exit 1
2196      fi      fi
2197  fi  fi
2198    
2199    #same for pkg/exch2 and pkg/regrid
2200    for pdir in exch2 regrid ; do
2201        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2202            echo "  Making source files in pkg/${pdir} from templates"
2203            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2204            ) > make_${pdir}.errors 2>&1
2205            RETVAL=$?
2206            if test "x${RETVAL}" = x0 ; then
2207                rm -f make_${pdir}.errors
2208            else
2209                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2210                cat make_${pdir}.errors 1>&2
2211                exit 1
2212            fi
2213        fi
2214    done
2215    
2216  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2217  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2218      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2219      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2220          PDEPEND=$tmp  fi
2221      else  if  test "x${PKG_DEPEND}" = x ; then
2222          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2223          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2224  else  else
2225      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2226          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2227          exit 1          exit 1
2228      fi      fi
2229        echo "  getting package dependency info from  $PKG_DEPEND"
2230    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2231        get_pdepend_list $PKG_DEPEND
2232  fi  fi
2233  echo "  getting package dependency info from  $PDEPEND"  
2234  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2235  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2236  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2237      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2238      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2239  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2240  if test ! "x${RETVAL}" = x0 ; then  fi
2241      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2242      exit 1          echo "Warning:  No package groups information was specified."
2243            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2244    else
2245        if test ! -r ${PKG_GROUPS} ; then
2246            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2247            exit 1
2248        fi
2249        echo "  getting package groups info from      $PKG_GROUPS"
2250  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2251    
2252  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2253  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2254  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2255  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2256      for i in "." $MODS ; do      for i in "." $MODS ; do
2257          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2258                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2259                  break                  break
2260          fi          fi
2261      done      done
2262  fi  fi
2263  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2264      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2265  fi      if test "x${PKG_GROUPS}" = x ; then
2266  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2267      echo "default packages file disabled"          exit 1
2268        fi
2269  else  else
2270      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2271          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2272          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2273      else      else
2274          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2275          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2276          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2277          RETVAL=$?          RETVAL=$?
2278          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2279              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2280              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2281              exit 1              exit 1
2282          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2283      fi      fi
2284  fi  fi
2285    for i in $pkg_list ; do
2286        PACKAGES="$PACKAGES $i"
2287    done
2288    echo     "    before group expansion packages are:$PACKAGES"
2289    if test "x${PKG_GROUPS}" != x ; then
2290        RET=1
2291        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2292        echo "    after group expansion packages are: $PACKAGES"
2293    fi
2294    
2295  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2296    echo "" > $TMP.pack
2297    for i in $PACKAGES ; do
2298        echo $i >> $TMP.pack
2299    done
2300    for i in `grep  "-" $TMP.pack` ; do
2301        j=`echo $i | sed 's/[-]//'`
2302        DISABLE="$DISABLE $j"
2303    done
2304  pack=  pack=
2305  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2306      addit="t"      addit="t"
# Line 810  for p in $PACKAGES ; do Line 2315  for p in $PACKAGES ; do
2315  done  done
2316  PACKAGES="$pack"  PACKAGES="$pack"
2317  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2318  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2319  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2320    # Test if each explicitly referenced package exists
2321  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2322      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2323          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2324            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2325          exit 1          exit 1
2326      fi      fi
2327      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2328  done  done
2329  pack=`cat ./.tmp_pack | sort | uniq`  PACKAGES=
2330  rm -f ./.tmp_pack  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2331  PACKAGES=      PACKAGES="$PACKAGES $i"
2332  for i in $pack ; do  done
2333      PACKAGES="$PACKAGES $i"  rm -f $TMP.pack
2334  done  echo "    packages are: $PACKAGES"
2335  echo "    packages are:  $PACKAGES"  
2336    #  Check for package MNC: if NetCDF is available, then build the MNC
2337    #  template files ; otherwise, delete mnc from the list of packages.
2338    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2339    mnc_in=$?
2340    if test "x$HAVE_NETCDF" != xt ; then
2341        if test "x$mnc_in" = x0 ; then
2342            cat <<EOF
2343    *********************************************************************
2344    WARNING: the "mnc" package was enabled but tests failed to compile
2345      NetCDF applications.  Please check that:
2346    
2347      1) NetCDF is correctly installed for this compiler and
2348      2) the LIBS variable (within the "optfile") specifies the correct
2349           NetCDF library to link against.
2350    
2351      Due to this failure, the "mnc" package is now DISABLED.
2352    *********************************************************************
2353    EOF
2354            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2355            DISABLE="$DISABLE mnc"
2356        else
2357        #  this prevent to add mnc (due to pdepend rules) if not available
2358            DISABLE="$DISABLE mnc"
2359        fi
2360    else
2361        # we have NetCDF, we try to build MNC template files
2362        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2363        RETVAL=$?
2364        if test "x${RETVAL}" = x0 ; then
2365            rm -f make_mnc.errors
2366        else
2367            echo "Error: problem encountered while building source files in pkg/mnc:"
2368            cat make_mnc.errors 1>&2
2369            if test "x$mnc_in" = x0 ; then
2370                exit 1
2371            else
2372                DISABLE="$DISABLE mnc"
2373            fi
2374        fi
2375    fi
2376    
2377    #  Check for package PROFILES: if NetCDF is not available,
2378    #  then delete profiles from the list of available packages.
2379    if test "x$HAVE_NETCDF" != xt ; then
2380        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2381        RETVAL=$?
2382        if test "x$RETVAL" = x0 ; then
2383            cat <<EOF
2384    *********************************************************************
2385    WARNING: the "profiles" package was enabled but tests failed to
2386      compile NetCDF applications.  Please check that:
2387    
2388      1) NetCDF is correctly installed for this compiler and
2389      2) the LIBS variable (within the "optfile") specifies the correct
2390           NetCDF library to link against.
2391    
2392      Due to this failure, the "profiles" package is now DISABLED.
2393    *********************************************************************
2394    EOF
2395            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2396            DISABLE="$DISABLE profiles"
2397        else
2398        #  this prevent to add profiles (due to pdepend rules) if not available
2399            DISABLE="$DISABLE profiles"
2400        fi
2401    fi
2402    
2403    #  Make sure the openad package is enabled if using OpenAD
2404    if test "x$OPENAD" != x ; then
2405        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2406        RETVAL=$?
2407        if test "x$RETVAL" != x0 ; then
2408            cat <<EOF
2409    
2410    *********************************************************************
2411    ERROR: when generating an adjoint with OpenAD, the openad package
2412      must be enabled.  Please add it to packages.conf.
2413    *********************************************************************
2414    
2415    EOF
2416            exit 1
2417        fi
2418    fi
2419    
2420  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2421  ck=    echo "  applying package dependency rules"
2422  while test "x$ck" != xtt ; do    ck=
2423      while test "x$ck" != xtt ; do
2424      i=0      i=0
2425      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2426      rtot=$nname      rtot=$nname
2427      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2428    
2429          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2430          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 845  while test "x$ck" != xtt ; do Line 2436  while test "x$ck" != xtt ; do
2436                  pin="t"                  pin="t"
2437              fi              fi
2438          done          done
2439            #  or in the current $STANDARDDIRS list?
2440            for p in $STANDARDDIRS ; do
2441                if test "x$p" = "x$pname" ; then pin="t" ; fi
2442            done
2443    
2444          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2445          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 867  while test "x$ck" != xtt ; do Line 2462  while test "x$ck" != xtt ; do
2462    
2463          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2464          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2465                #echo "   " $pname ": need to add :" $dname
2466              in_dis="f"              in_dis="f"
2467              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2468                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 887  while test "x$ck" != xtt ; do Line 2483  while test "x$ck" != xtt ; do
2483          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2484          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2485              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2486              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2487              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2488              exit 1              exit 1
2489          fi          fi
2490          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2491            #i=$(( $i + 1 ))
2492      done      done
2493      ck=$ck"t"      ck=$ck"t"
2494  done    done
2495  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2496    fi
2497  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2498      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2499      if test -d $adr ; then      if test -d $adr ; then
# Line 910  for i in $PACKAGES ; do Line 2508  for i in $PACKAGES ; do
2508      fi      fi
2509  done  done
2510    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2511  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2512  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2513  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2514  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2515  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2516  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2517  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2518  all_pack=  all_pack=
2519    DISABLED_PACKAGES=
2520  for n in $names ; do  for n in $names ; do
2521      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2522          has_pack="f"          has_pack="f"
# Line 959  for n in $names ; do Line 2527  for n in $names ; do
2527              fi              fi
2528          done          done
2529          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2530              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2531              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2532          fi          fi
2533      fi      fi
2534  done  done
2535  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2536  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2537      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2538      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2539  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2540    
2541  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2542      case $i in      case $i in
2543          aim_v23)          aim_v23)
2544              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2545              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2546              ;;              ;;
2547      esac      esac
2548  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2549    
2550  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2551    
2552  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2553  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2554  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2555      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2556            adr="$ROOTDIR/$d/src"
2557            if test ! -d $adr ; then
2558                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2559                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2560                exit 1
2561            else
2562                SOURCEDIRS="$SOURCEDIRS $adr"
2563            fi
2564            adr="$ROOTDIR/$d/inc"
2565            if test ! -d $adr ; then
2566                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2567                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2568                exit 1
2569            else
2570                INCLUDEDIRS="$INCLUDEDIRS $adr"
2571            fi
2572        done
2573  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2574    
2575  echo "  Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2576  echo "    of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2577  CPP_OPTIONS=  CPP_OPTIONS=
2578    CPP_EEOPTIONS=
2579  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2580    names=`ls -1 "$ROOTDIR/pkg"`
2581  for i in $spaths ; do  for i in $spaths ; do
2582      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2583      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2584          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2585          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2586          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2587            for n in $names ; do
2588                test_for_package_in_cpp_options $CPP_OPTIONS $n
2589            done
2590        fi
2591        try="$i/CPP_EEOPTIONS.h"
2592        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2593            echo "    found CPP_EEOPTIONS=\"$try\""
2594            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2595    #**** not yet enabled ****
2596    #        test_for_mpi_in_cpp_eeoptions $try
2597    #**** not yet enabled ****
2598            CPP_EEOPTIONS="$try"
2599      fi      fi
2600  done  done
2601  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2602      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2603      exit 1      exit 1
2604  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2605    
2606  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2607  #  compiler.  #  compiler.
2608  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2609      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2610  fi  fi
2611  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2612    touch $TMP.adSrcFiles
2613  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2614      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2615      for j in $list_files ; do      for j in $list_files ; do
2616          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2617      done      done
2618  done  done
2619    if test ! "x"$FS = "x.f" ; then
2620  cat <<EOF > adjoint_sed      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2621  s/call adopen(/call adopen ( mythid,\\      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2622       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2623    
2624  echo  echo
2625  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2626  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2627  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2628      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2629          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2630      fi      fi
2631  done  done
2632    
2633    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2634        if test ! "x$MPIINCLUDEDIR" = x ; then
2635            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2636            #   checking for additional included headers (in case of chain of included
2637            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2638            mpi_headers_do_local_copy
2639        fi
2640    fi
2641    
2642  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2643  rm -rf .links.tmp  rm -rf $TMP.links
2644  mkdir .links.tmp  mkdir $TMP.links
2645  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2646  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2647  echo -n 'SRCFILES = '    > srclist.inc      echo
2648  echo -n 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2649  echo -n 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2650  echo -n 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2651  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2652        echo "   sane such as:"
2653        echo
2654        echo "      umask 0002"
2655        echo
2656        echo "   and please verify that you have the proper permissions for"
2657        echo "   creating sub-directories and then reading files created"
2658        echo "   within them."
2659        echo
2660        exit 1
2661    fi
2662    rm -f $TMP.links/foo
2663    
2664    if test "x$OPENAD" != x ; then
2665        OAD_DONT_COMPILE="/dev/null"
2666        OAD_DONT_TRANSFORM="/dev/null"
2667        OAD_KEEP_ORIGINAL="/dev/null"
2668        OAD_CB2M_FILES="/dev/null"
2669        OADTOOLS="$TOOLSDIR/OAD_support"
2670        echo "  looking for dontCompile file:  "
2671        for i in "." $MODS $OADTOOLS ; do
2672            if test -r $i"/dontCompile" ; then
2673                OAD_DONT_COMPILE=$i"/dontCompile"
2674                echo "     found $OAD_DONT_COMPILE"
2675                break
2676            fi
2677        done
2678        echo "  looking for dontTransform file:  "
2679        for i in "." $MODS $OADTOOLS ; do
2680            if test -r $i"/dontTransform" ; then
2681                OAD_DONT_TRANSFORM=$i"/dontTransform"
2682                echo "     found $OAD_DONT_TRANSFORM"
2683                break
2684            fi
2685        done
2686        echo "  looking for keepOriginal file:  "
2687        for i in "." $MODS $OADTOOLS ; do
2688            if test -r $i"/keepOriginal" ; then
2689                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2690                echo "     found $OAD_KEEP_ORIGINAL"
2691                break
2692            fi
2693        done
2694        echo "  looking for cb2mFiles:  "
2695        for i in "." $MODS $OADTOOLS ; do
2696            if test -r $i"/cb2mFiles" ; then
2697                OAD_CB2M_FILES=$i"/cb2mFiles"
2698                echo "     found $OAD_CB2M_FILES"
2699                break
2700            fi
2701        done
2702        echo "   OpenAD exceptions:  "
2703    fi
2704    
2705    echo "# This section creates symbolic links" > $TMP.srclinks
2706    echo "" >> $TMP.srclinks
2707    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2708    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2709    printf 'C_SRC_FILES = '   > $TMP.csrclist
2710    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2711    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2712    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2713  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2714  for d in $alldirs ; do  for d in $alldirs ; do
2715      deplist=      deplist=
2716      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2717      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2718        if test "x$OPENAD" != x ; then
2719            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2720        fi
2721      for sf in $sfiles ; do      for sf in $sfiles ; do
2722          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2723              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2724                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2725                  touch .links.tmp/$sf                  case $d/$sf in
2726                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2727                  case $extn in                          ignore_f=t
2728                      F)                          ;;
2729                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2730                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2731                            ;;
2732                      ./FC_NAMEMANGLE.h)
2733                            ignore_f=t
2734                            ;;
2735                      ./BUILD_INFO.h)
2736                            ignore_f=t
2737                            ;;
2738                      ./EMBEDDED_FILES.h)
2739                            ignore_f=t
2740                            ;;
2741                      *)
2742                            #  For the local directory *ONLY*,
2743                            #  ignore all soft-links
2744                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2745                                ignore_f=t
2746                            else
2747                                touch $TMP.links/$sf
2748                                deplist="$deplist $sf"
2749                            fi
2750                            ;;
2751                    esac
2752                    if test "x$ignore_f" = xf ; then
2753                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2754                        case $extn in
2755                          F)
2756                            echo    " \\"  >> $TMP.F77srclist
2757                            printf " $sf" >> $TMP.F77srclist
2758                            if test "x$OPENAD" = x ; then
2759                                basename=${sf%%.F}
2760                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2761                                if test -z "$isAD" ; then
2762                                    echo    " \\"  >> $TMP.nonADF77srclist
2763                                    printf " $sf" >> $TMP.nonADF77srclist
2764                                fi
2765                            else #- OpenAD case:
2766                                basename=${sf%%.F}
2767                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2768                                if test -z "$isAD" ; then
2769                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2770                                    if test -z "$toBeIgnored" ; then
2771                                        echo    " \\"  >> $TMP.nonADF77srclist
2772                                        printf " $sf" >> $TMP.nonADF77srclist
2773                                    else
2774                                        echo "    not to be compiled   :  $sf"
2775                                    fi
2776                                else # file is initially listed as an AD file we want to exclude it
2777                                     # or we want to retain the untransformed version
2778                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2779                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2780                                    if test -n "$notToBeTransformed"; then
2781                                        echo "    not to be transformed:  $sf"
2782                                    fi
2783                                    if test -n "$untransformedVersionToBeKept" ; then
2784                                        echo "    original to be kept  :  $sf"
2785                                    fi
2786                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2787                                        echo    " \\"  >> $TMP.nonADF77srclist
2788                                        printf " $sf" >> $TMP.nonADF77srclist
2789                                    fi
2790                                fi
2791                            fi
2792                          ;;                          ;;
2793                      F90)                      F90)
2794                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2795                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2796                          ;;                          ;;
2797                      c)                      c)
2798                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2799                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2800                          ;;                          ;;
2801                      h)                      h)
2802                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2803                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2804                          ;;                          ;;
2805                      flow)                      flow)
2806                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> $TMP.ad_flow_files
2807                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> $TMP.ad_flow_files
2808                          ;;                          ;;
2809                  esac                     esac
2810                    fi
2811              fi              fi
2812          fi          fi
2813      done      done
2814      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2815          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2816          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2817          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2818          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2819    # We need to make sure that the link isn't already there.
2820    # This may happen when make thinks that a header file has to be "remade"
2821    # because a module it depends on has changed.  In this case we do nothing.
2822            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2823          fi
2824      fi      fi
2825  done  done
2826  rm -rf .links.tmp  rm -rf $TMP.links
2827  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2828  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2829  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2830  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2831  echo "" >> ad_flow_files.inc  echo "" >> $TMP.hsrclist
2832    echo "" >> $TMP.ad_flow_files
2833    
2834    CMDLINE=$0
2835    for xx in "$@" ; do nw=`echo $xx | wc -w`
2836        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2837                            else CMDLINE="$CMDLINE '$xx'" ; fi
2838    done
2839    
2840  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2841      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2842  fi  fi
2843  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2844  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1171  echo "#    $MACHINE" >> $MAKEFILE Line 2846  echo "#    $MACHINE" >> $MAKEFILE
2846  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2847  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2848  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2849  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2850  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2851  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2852    
2853  EXE_AD=$EXECUTABLE"_ad"  EXE_AD=$EXECUTABLE"_ad"
2854  EXE_FTL=$EXECUTABLE"_ftl"  EXE_FTL=$EXECUTABLE"_ftl"
2855  EXE_SVD=$EXECUTABLE"_svd"  EXE_SVD=$EXECUTABLE"_svd"
2856    
2857  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2858  #  #
2859    # OPTFILE="$OPTFILE"
2860    #
2861  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2862  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2863  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1191  cat >>$MAKEFILE <<EOF Line 2868  cat >>$MAKEFILE <<EOF
2868  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2869  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2870  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2871  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2872  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2873  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1200  cat >>$MAKEFILE <<EOF Line 2875  cat >>$MAKEFILE <<EOF
2875  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2876    
2877  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2878  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2879  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2880  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2881  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2882  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2883  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2884    OADTOOLS    = ${OADTOOLS}
2885    
2886  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2887  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 1213  EXE_AD      = ${EXE_AD} Line 2889  EXE_AD      = ${EXE_AD}
2889  EXE_FTL     = ${EXE_FTL}  EXE_FTL     = ${EXE_FTL}
2890  EXE_SVD     = ${EXE_SVD}  EXE_SVD     = ${EXE_SVD}
2891    
2892    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2893    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2894    
2895    # These files are created by Makefile
2896    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2897  EOF  EOF
2898    
2899  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2900        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2901    else
2902        echo "EMBEDDED_FILES = " >>$MAKEFILE
2903    fi
2904    
2905    # extract default cpp search path so we can pass it to makedepend
2906    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2907    
2908  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2909  # Unix ln (link)  # Unix ln (link)
2910  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2911  # Dependency generator  # Dependency generator
2912  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2913  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1230  KPP = ${KPP} Line 2916  KPP = ${KPP}
2916  FC = ${FC}  FC = ${FC}
2917  # Fortran compiler  # Fortran compiler
2918  F90C = ${F90C}  F90C = ${F90C}
2919    # C compiler
2920    CC = ${CC}
2921  # Link editor  # Link editor
2922  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2923    
2924  # Defines for CPP  # Defines for CPP
2925  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2926  # Includes for CPP  # Includes for CPP
2927  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2928    # default CPP includes for makedepend
2929    CPPINCLUDES = ${CPPINCLUDES}
2930  # Flags for KPP  # Flags for KPP
2931  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2932  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2933  # Optim./debug for FC  # Optim./debug for FC
2934  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS}
2935  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2936  # Optim./debug for FC  # Optim./debug for FC
2937  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2938  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2939    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2940  # Flags for CC  # Flags for CC
2941  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2942  # Files that should not be optimized  # Files that should not be optimized
2943  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2944  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2945  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2946  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2947  # Name of the Mekfile  # Name of the makefile
2948  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2949    # Name of the make program
2950    MAKE = ${MAKE}
2951    
2952  EOF  EOF
2953    
2954  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2955  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2956  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2957  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2958  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2959  echo               >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2960  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
2961  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2962  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2963    echo >> $MAKEFILE
2964    
2965  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  # add definitions for preprocessed sources
2966  rm -f ad_flow_files.inc  # and note that not all systems allow case sensitive extensions
2967    # hence the $FS and $FS90 here.
2968    # for fixed format f90 files we use ff90 or FF90 resp
2969    # but these are not expected to be the original source files
2970    
2971    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2972    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2973    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2974    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2975    echo >> $MAKEFILE
2976    echo '.SUFFIXES:' >> $MAKEFILE
2977    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2978    
2979  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2980    
2981  .SUFFIXES:  all: fwd_exe_target
2982  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2983            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2984            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2985            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2986            @-rm -f ad_config.template
2987            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2988    
2989  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2990  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2991          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2992    
2993  depend:  depend:
2994          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2995          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2996          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2997            -rm -f makedepend.out
2998    
2999    lib: libmitgcmuv.a
3000    
3001  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  libmitgcmuv.a: \$(OBJFILES)
3002            ar rcv libmitgcmuv.a \$(OBJFILES)
3003            ar d   libmitgcmuv.a main.o
3004    
3005  small_f: \$(F77FILES) \$(F90FILES)  obj: \$(OBJFILES)
3006    
3007  output.txt: \$(EXECUTABLE)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
3008    
3009    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
3010    
3011    # remove most of the files that "make" generates
3012  clean:  clean:
3013          -cat AD_CONFIG.template > AD_CONFIG.h          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
3014          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.o
3015            -rm -rf *.$FS *.flowdir
3016            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
3017    
3018    # remove most of the files that "make" and "make depend" generate
3019  Clean:  Clean:
3020          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
3021          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
3022          -rm -f Makefile.bak genmake_state genmake_*optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
3023            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
3024    
3025    # remove also the executable, files that "genmake2" generates (except Makefile)
3026    #         and output from a run (plus log files from testreport)
3027  CLEAN:  CLEAN:
3028          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
3029            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3030            -rm -f $LOGFILE genmake_state genmake_*optfile
3031            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3032            -rm -rf mpi_headers mnc_test_*
3033          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3034          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3035          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3036          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3037            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3038            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3039            -rm -f oad_cp.[0-9][0-9][0-9].?????
3040    
 #eh3 Makefile: makefile  
3041  makefile:  makefile:
3042          ${0} $@          $THIS_SCRIPT $G2ARGS
3043  cleanlinks:  cleanlinks:
3044          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3045    
3046  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
3047  .F.f:  ${PACKAGES_DOT_H}:
3048          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
3049  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3050    AD_CONFIG.h:
3051            @echo Creating \$@ ...
3052            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3053    FC_NAMEMANGLE.h:
3054            @echo Creating \$@ ...
3055            echo "$FC_NAMEMANGLE" > \$@
3056    
3057    BUILD_INFO.h:
3058            @echo Creating \$@ ...
3059    EOF
3060    
3061    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3062    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3063    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3064    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3065    
3066    if test "x$EMBED_SRC" = xt ; then
3067        cat >>$MAKEFILE <<EOF
3068    
3069    decode_files.o : EMBEDDED_FILES.h
3070    
3071    ##  \$(F77_PP_SRC_FILES)
3072    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3073            @echo Creating \$@ ...
3074            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3075            -rm -f all_fF.tar.gz
3076            -gzip all_fF.tar
3077    
3078    EMBEDDED_FILES.h : all_fF.tar.gz
3079            @echo Creating \$@ ...
3080            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3081    
3082    EOF
3083    fi
3084    
3085    cat >>$MAKEFILE <<EOF
3086    
3087    # The normal chain of rules is (  .F - .$FS - .o  )
3088    
3089    ## This nullifies any default implicit rules concerning these two file types:
3090    ## %.o : %.F
3091    
3092    # C preprocessing and replacing the _d in constants:
3093    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3094    
3095    .F.$FS:
3096            \$(CPPCMD)  > \$@
3097    .$FS.o:
3098            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3099    .F.o:
3100          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3101  .F90.f90:  .F90.$FS90:
3102          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3103  .f90.o:  .FF90.f$FS90:
3104            \$(CPPCMD)  > \$@
3105    .$FS90.o:
3106          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3107    .f$FS90.o:
3108            cp \$< \$(basename  \$<).f90
3109            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3110  .c.o:  .c.o:
3111          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3112    .flow.flowdir:
3113            \$(CPPCMD) > \$@
3114    
3115  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3116  .F.p:  .F.p:
3117          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3118  .p.f:  .p.$FS:
3119          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3120    
3121    EOF
3122    
3123  #=========================================  #=========================================
3124  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3125    #===  for TAMC/TAF  ======================
3126    
3127    if test "x$OPENAD" = x ; then
3128    
3129    cat >>$MAKEFILE <<EOF
3130    
3131  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3132  TAF            = ${TAF}  TAF            = ${TAF}
3133    
3134  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3135  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3136    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3137    
3138  EOF  EOF
3139    
# Line 1346  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3142  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3142  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3143  for i in $ad_vars ; do  for i in $ad_vars ; do
3144      name=$i      name=$i
3145      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3146      eval $t1      eval $t1
3147      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3148      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3149  done  done
3150    
3151  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3152  echo >> $MAKEFILE  echo >> $MAKEFILE
3153  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3154  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3155  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3156      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3157      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3158  done  done
3159  echo >> $MAKEFILE  echo >> $MAKEFILE
3160  rm -f ad_files  rm -f $TMP.adSrcFiles
3161    
3162    if test $CAT_SRC_FOR_TAF = 0 ; then
3163    cat >>$MAKEFILE <<EOF
3164    
3165    # ... Utilities ...
3166    remove_comments:
3167            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3168            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3169    adj_sed:
3170            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3171            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3172    ftl_sed:
3173            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3174            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3175    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3176    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3177    EOF
3178    fi
3179    
3180  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3181    
3182  # ... AD ...  # ... AD ...
3183  adall: ad_taf  adall: ad_exe_target
3184  adtaf: ad_taf_output.f  adtaf: ad_taf_output.$FS
3185  adtamc: ad_tamc_output.f  adtamc: ad_tamc_output.$FS
3186    
3187    ad_exe_target:
3188            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3189            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3190            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191            @-rm -f ad_config.template
3192            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3193    
3194  ad_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3195            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3196          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3197          @make \$(F77FILES)          @-rm -f ad_config.template
3198          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3199          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3200            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3201  ad_taf_output.f: ad_input_code.f  
3202          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  adtafonly:
3203          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3204            ls -l ad_input_code_ad.$FS
3205  ad_taf: ad_taf_output.o \$(OBJFILES)          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
         \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)  
   
 ad_tamc_output.f: ad_input_code.f  
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  
         cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f  
3206    
3207  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
3208          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3209    if test $CAT_SRC_FOR_TAF = 1 ; then
3210    cat >>$MAKEFILE <<EOF
3211    # ... send 1 file to TAF ...
3212    ad_taf_output.$FS: ad_input_code.$FS
3213            @-rm -f ad_input_code_ad.$FS ; echo ''
3214            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3215            ls -l ad_input_code_ad.$FS
3216            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3217    
3218    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3219            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3220    
3221    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3222    
3223    EOF
3224    
3225    else
3226    cat >>$MAKEFILE <<EOF
3227    # ... send multiple files to TAF ...
3228    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3229            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3230            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3231            @-rm -f ad_config.template
3232            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3233            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3234            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3235            \$(MAKE) -f \$(MAKEFILE) remove_comments
3236            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3237            \$(MAKE) -f \$(MAKEFILE) adj_sed
3238            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3239    
3240    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3241            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3242            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3243    
3244    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3245            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3246    
3247    EOF
3248    fi
3249    
3250    cat >>$MAKEFILE <<EOF
3251    adonlyfwd:
3252            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3253    
3254    adtrick:
3255            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3256    
3257    ad_tamc_output.$FS: ad_input_code.$FS
3258            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3259            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3260    
3261    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3262            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3263    
3264  # ... FTL ...  # ... FTL ...
3265  ftlall: ftl_taf  ftlall: ftl_exe_target
3266  ftltaf: ftl_taf_output.f  ftltaf: ftl_taf_output.$FS
3267  ftltamc: ftl_tamc_output.f  ftltamc: ftl_tamc_output.$FS
3268    
3269  ftl_input_code.f: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3270          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3271          @make \$(F77FILES)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3272          @make \$(AD_FLOW_FILES)          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3273          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.f          @-rm -f ad_config.template
3274            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
 ftl_taf_output.f: ftl_input_code.f  
         \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_taf_output.f  
   
 ftl_taf: ftl_taf_output.o \$(OBJFILES)  
         \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  
   
 ftl_tamc_output.f: ftl_input_code.f  
         \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.f  
         cat ftl_input_code_ftl.f | sed -f adjoint_sed > ftl_tamc_output.f  
3275    
3276  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_input_code.$FS: \$(AD_FILES)
3277          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3278            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3279            @-rm -f ad_config.template
3280            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3281            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3282            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3283    
3284    ftltafonly:
3285            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3286            ls -l ftl_input_code_tl.$FS
3287            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3288    
3289    EOF
3290    
3291    if test $CAT_SRC_FOR_TAF = 1 ; then
3292    cat >>$MAKEFILE <<EOF
3293    # ... send 1 file to TAF ...
3294    ftl_taf_output.$FS: ftl_input_code.$FS
3295            @-rm -f ftl_input_code_tl.$FS ; echo ''
3296            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3297            ls -l ftl_input_code_tl.$FS
3298            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3299    
3300    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3301            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3302    
3303    EOF
3304    
3305    else
3306    cat >>$MAKEFILE <<EOF
3307    # ... send multiple files to TAF ...
3308    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3309            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3310            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3311            @-rm -f ad_config.template
3312            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3313            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3314            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3315            \$(MAKE) -f \$(MAKEFILE) remove_comments
3316            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3317            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3318            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3319    
3320    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3321            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3322            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3323    
3324    EOF
3325    fi
3326    
3327    cat >>$MAKEFILE <<EOF
3328    ftl_tamc_output.$FS: ftl_input_code.$FS
3329            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3330            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3331    
3332    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3333            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3334    
3335  # ... SVD ...  # ... SVD ...
3336  svd: svd_taf  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3337  svd_taf_f: svd_taf_output.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3338            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3339    svdall: svd_touch svd_taf
3340    
3341    svd_taf: \$(OBJFILES)
3342            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3343    
3344            @echo "--->>> Only COMPILE svd code! <<<---"
3345            @echo "--->>> Assumes you previously <<<---"
3346            @echo "--->>> did make svdtaf        <<<---"
3347    
3348    svd_touch:
3349            @echo "--->>> Only COMPILE svd code! <<<---"
3350            @echo "--->>> Assumes you previously <<<---"
3351            @echo "--->>> did make svdtaf        <<<---"
3352            touch ad_taf_output.$FS ftl_taf_output.$FS
3353            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3354            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3355            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3356            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3357            @-rm -f ad_config.template
3358    
3359    EOF
3360    
3361    fi
3362    
3363  svd_input_code.f: \$(SRCFILES)  #===  for OpenAD  ========================
         cmp svd_config.template AD_CONFIG.h || cat svd_config.template > AD_CONFIG.h  
         @make \$(F77FILES)  
         @make \$(AD_FLOW_FILES)  
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > svd_input_code.f  
   
 svd_taf_output.f: svd_input_code.f  
         \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) svd_input_code.f  
         cat svd_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f  
3364    
3365  svd_taf: svd_taf_output.o \$(OBJFILES)  if test "x$OPENAD" != x ; then
         \$(LINK) -o ${EXE_SVD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
3366    
3367    # ============ begin OpenAD specific section ==============
3368    
3369  #=========================================  cat >>$MAKEFILE <<EOF
3370    # ... OpenAD ...
3371    
3372    # all the source files linked from the various locations:
3373    ALL_LINKED_FILES= \
3374    \$(F77_SRC_FILES) \
3375    \$(C_SRC_FILES) \
3376    \$(H_SRC_FILES) \
3377    \$(F90_SRC_FILES) \
3378    \$(SPECIAL_FILES)
3379    
3380    ifndef OPENADROOT
3381      \$(error "Error:  environment variable OPENADROOT not defined!")
3382    endif
3383    
3384    ifndef XAIFSCHEMAROOT
3385      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3386    endif
3387    
3388    ifndef XAIFBOOSTERROOT
3389      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3390    endif
3391    
3392    EOF
3393    
3394    echo "  Add the source list for common block to module conversion "
3395    echo >> $MAKEFILE
3396    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3397    for i in `cat ${OAD_CB2M_FILES}` ; do
3398      echo    " \\" >> $MAKEFILE
3399      printf " $i" >> $MAKEFILE
3400    done
3401    echo >> $MAKEFILE
3402    
3403    echo "  Add the source list for AD code generation"
3404    echo >> $MAKEFILE
3405    printf "AD_FILES = " >> $MAKEFILE
3406    for i in `cat ${OAD_CB2M_FILES}` ; do
3407      echo    " \\" >> $MAKEFILE
3408      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3409    done
3410    AD_FILES=`cat $TMP.adSrcFiles`
3411    for i in $AD_FILES ; do
3412      basename=${i%%.f}
3413      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3414      if test -z "$toBeIgnored" ; then
3415        echo    " \\" >> $MAKEFILE
3416        printf " $i" >> $MAKEFILE
3417      fi
3418    done
3419    echo >> $MAKEFILE
3420    rm -f $TMP.adSrcFiles
3421    
3422    cat >>$MAKEFILE <<EOF
3423    
3424    adAll: ad_exe_target
3425    .PHONY: adAll
3426    
3427    ad_exe_target:
3428            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3429            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3430            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3431            @-rm -f ad_config.template
3432            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3433    
3434    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3435    
3436    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3437    
3438    .PHONY: adDepend
3439    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3440            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3441            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3442            -rm -f makedepend.out
3443    
3444    OPENAD_SUPPORT_F90_SRC_FILES = \
3445    w2f__types.F90 \
3446    OAD_active.F90 \
3447    OAD_cp.F90 \
3448    OAD_rev.F90 \
3449    OAD_tape.F90 \
3450    OAD_regular_cp.F90 \
3451    revolve.F90
3452    
3453    OPENAD_SUPPORT_C_SRC_FILES = \
3454    iaddr.c \
3455    timeRatio.c
3456    
3457    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3458            cat \$^ > \$@
3459    
3460    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3461            cat \$^ > \$@
3462    
3463    f95_test.out: f95_test_mods.f90 f95_test.f90
3464            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3465            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3466    
3467    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3468    
3469    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3470    
3471    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3472    
3473    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3474            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3475    
3476    # create sources files modules from header files containing common blocks
3477    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3478            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3479    
3480    # create new header files with USE statements for the new modules made above
3481    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3482            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3483    
3484    # change the include directives of everybody to refer to  the new header files with the USE statements
3485    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3486            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3487    
3488    # makefile debug rule
3489    small_f: \$(CB2M_F90_PP_SRC_FILES)
3490    .PHONY: small_f
3491    
3492    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3493            cat \$^ > \$@
3494    
3495    # canonicalizer
3496    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3497            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3498    
3499    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3500    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3501            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3502    
3503    # F -> WHIRL
3504    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3505            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3506    
3507    # WHIRL -> XAIF
3508    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3509            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3510    
3511    # XAIF -> XAIF'
3512    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3513            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3514    
3515    # XAIF' -> WHIRL'
3516    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3517            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3518    
3519    # WHIRL' -> F'
3520    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3521            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3522    
3523    # insert template directives
3524    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3525            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3526    
3527    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3528    # postprocess F'
3529    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3530            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3531            # the target is a placeholder to trigger a single execution of the rule
3532            touch \$@
3533    # put this so make knows about the postprocessing output
3534    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3535    
3536    # link the XAIF schema files
3537    %.xsd:
3538            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3539    
3540    # link the support files:
3541    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3542            \$(LN) \${OADTOOLS}/\$@ .
3543    
3544    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3545    
3546    # ============ end OpenAD specific section ==============
3547    
3548  EOF  EOF
3549    
3550    fi
3551    
3552    #=========================================
3553    
3554  if test "x$EXE