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revision 1.258 by jmc, Fri Aug 16 16:36:32 2013 UTC revision 1.276 by jmc, Thu Jan 7 20:21:42 2016 UTC
# Line 19  Usage: "$0" [OPTIONS] Line 19  Usage: "$0" [OPTIONS]
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
34    
35      -nooptfile | --nooptfile      -nooptfile | --nooptfile
# Line 208  test_for_string_in_file() { Line 216  test_for_string_in_file() {
216  expand_pkg_groups() {  expand_pkg_groups() {
217      new_packages=      new_packages=
218      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
219          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221          matched=0          matched=0
222          for i in $PACKAGES ; do          for i in $PACKAGES ; do
223              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
224              RETVAL=$?              RETVAL=$?
225              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
226                  matched=1                  matched=1
# Line 224  expand_pkg_groups() { Line 232  expand_pkg_groups() {
232              fi              fi
233          done          done
234          PACKAGES=$new_packages          PACKAGES=$new_packages
235          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
236          return $matched          return $matched
237      else      else
238          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 1079  EOF Line 1087  EOF
1087  }  }
1088    
1089  check_lapack_libs()  {  check_lapack_libs()  {
1090      if test ! "x$SKIP_LAPACK_CHECK" = x ; then      if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
         return  
     fi  
1091      echo >> $LOGFILE      echo >> $LOGFILE
1092      echo "running: check_lapack_libs()" >> $LOGFILE      echo "running: check_lapack_libs()" >> $LOGFILE
1093      cat <<EOF > genmake_tla.F      cat <<EOF > genmake_tla.F
# Line 1277  GSL= Line 1283  GSL=
1283  DEVEL=  DEVEL=
1284  HAVE_TEST_L=  HAVE_TEST_L=
1285    
1286  # comment this line out to enable lapack test  # set this to "t" to enable lapack test
1287  SKIP_LAPACK_CHECK=t  CHECK_FOR_LAPACK=f
1288    
1289  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1290  HAVE_SYSTEM=  HAVE_SYSTEM=
# Line 1325  FS= Line 1331  FS=
1331  FS90=  FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337  TAF=  TAF=
1338  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1339  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 1351  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAP Line 1359  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAP
1359  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
# Line 1407  for ac_option in "$@" ; do Line 1415  for ac_option in "$@" ; do
1415          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1416              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1417    
1418            -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1423              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1424          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
# Line 1576  for ac_option in "$@" ; do Line 1588  for ac_option in "$@" ; do
1588    
1589  done  done
1590    
1591    #TMP=./genmk_$$
1592    #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_${USER}_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599    fi
1600    rm -f $TMP
1601    #echo "  temp files: $TMP.*"
1602    
1603  printf "  getting local config information:  "  printf "  getting local config information:  "
1604  if test -f $gm_local ; then  if test -f $gm_local ; then
1605      echo "using $gm_local"      echo "using $gm_local"
# Line 1668  fi Line 1692  fi
1692    
1693  echo "  getting AD_OPTFILE information:"  echo "  getting AD_OPTFILE information:"
1694  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1695      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699      else      else
1700          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701      fi      fi
1702  fi  fi
1703  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1938  else Line 1964  else
1964  fi  fi
1965  rm -f genmake_tcomp*  rm -f genmake_tcomp*
1966    
1967  printf "  Do we have the etime() command using $FC...  "  printf "  Do we have the etime() command using $FC... "
1968  cat > genmake_tcomp.$FS <<EOF  cat > genmake_tcomp.$FS <<EOF
1969        program hello        program hello
1970        REAL*4 ACTUAL, TARRAY(2)        REAL*4 actual, tarray(2)
1971        EXTERNAL ETIME        actual = -999.
1972        REAL*4 ETIME        call ETIME( tarray, actual )
1973        actual = etime( tarray )        if ( actual.ge.0. ) then
1974        print *, tarray          print *, 0, tarray, actual
1975          else
1976            print *, 1, tarray, actual
1977          endif
1978        end        end
1979  EOF  EOF
1980  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1  $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1981  RETVAL=$?  RETVAL=$?
1982  if test "x$RETVAL" = x0 ; then  if test "x$RETVAL" = x0 ; then
1983        echo -n 'c,'
1984        ./genmake_tcomp > genmake_tcomp.out 2>&1
1985        RETVAL=$?
1986    fi
1987    if test "x$RETVAL" = x0 ; then
1988        echo -n 'r:'
1989        RETVAL=`cat genmake_tcomp.out | $AWK '{print $1}'`
1990    fi
1991    if test "x$RETVAL" = x0 ; then
1992      HAVE_ETIME=t      HAVE_ETIME=t
1993      DEFINES="$DEFINES -DHAVE_ETIME"      DEFINES="$DEFINES -DHAVE_ETIME"
1994      echo "yes"      echo " yes"
1995  else  else
1996      HAVE_ETIME=      HAVE_ETIME=
1997      echo "no"      echo " no"
1998  fi  fi
1999    #mkdir chk_etime ; cp -p -f genmake_tcomp* chk_etime
2000  rm -f genmake_tcomp*  rm -f genmake_tcomp*
2001    
2002  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
# Line 2237  if test "x${PKG_GROUPS}" != x ; then Line 2276  if test "x${PKG_GROUPS}" != x ; then
2276  fi  fi
2277    
2278  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2279  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2280  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2281      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2282  done  done
2283  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2284      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2285      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2286  done  done
# Line 2259  for p in $PACKAGES ; do Line 2298  for p in $PACKAGES ; do
2298  done  done
2299  PACKAGES="$pack"  PACKAGES="$pack"
2300  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2301  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2302  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2303  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2304  for i in $PACKAGES ; do  for i in $PACKAGES ; do
# Line 2268  for i in $PACKAGES ; do Line 2307  for i in $PACKAGES ; do
2307          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2308          exit 1          exit 1
2309      fi      fi
2310      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2311  done  done
2312  PACKAGES=  PACKAGES=
2313  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2314      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2315  done  done
2316  rm -f ./.tmp_pack  rm -f $TMP.pack
2317  echo "    packages are: $PACKAGES"  echo "    packages are: $PACKAGES"
2318    
2319  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
# Line 2344  EOF Line 2383  EOF
2383      fi      fi
2384  fi  fi
2385    
2386  #  Check for package RADTRANS: if LAPACK is not available,  #  Make sure the openad package is enabled if using OpenAD
2387  #  then issue a warning that the direct radtrans solver is not available.  if test "x$OPENAD" != x ; then
2388  if test "x$HAVE_LAPACK" != xt ; then      echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
     echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1  
2389      RETVAL=$?      RETVAL=$?
2390      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" != x0 ; then
2391          cat <<EOF          cat <<EOF
 *********************************************************************  
 WARNING: the "radtrans" package was enabled but tests failed to  
   compile LAPACK applications.  This means that the direct radtrans  
   solver is not available and compilation will fail if it is enabled.  
   If you want to use the direct solver, please check that:  
2392    
   1) LAPACK is correctly installed for this compiler and  
   2) the LIBS variable (within the "optfile") specifies the correct  
      LAPACK library to link against.  
2393  *********************************************************************  *********************************************************************
2394    ERROR: when generating an adjoint with OpenAD, the openad package
2395      must be enabled.  Please add it to packages.conf.
2396    *********************************************************************
2397    
2398  EOF  EOF
2399            exit 1
2400      fi      fi
2401  fi  fi
2402    
# Line 2553  fi Line 2588  fi
2588    
2589  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2590  #  compiler.  #  compiler.
2591  if test -f ./adSrcFiles.tmp ; then  if test -f $TMP.adSrcFiles ; then
2592      rm -f ./adSrcFiles.tmp      rm -f $TMP.adSrcFiles
2593  fi  fi
2594  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2595  touch adSrcFiles.tmp  touch $TMP.adSrcFiles
2596  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2597      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2598      for j in $list_files ; do      for j in $list_files ; do
2599          cat $i/$j >> adSrcFiles.tmp          cat $i/$j >> $TMP.adSrcFiles
2600      done      done
2601  done  done
2602  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2603      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2604      mv -f adSrcFiles.tmp_f adSrcFiles.tmp      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2605  fi  fi
2606    
2607  echo  echo
# Line 2588  if test ! "x$DIVA" = x -a ! "x$MPI" = x Line 2623  if test ! "x$DIVA" = x -a ! "x$MPI" = x
2623  fi  fi
2624    
2625  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2626  rm -rf .links.tmp  rm -rf $TMP.links
2627  mkdir .links.tmp  mkdir $TMP.links
2628  touch .links.tmp/foo  touch $TMP.links/foo
2629  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2630      echo      echo
2631      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2632      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2607  if test ! -r ".links.tmp/foo" ; then Line 2642  if test ! -r ".links.tmp/foo" ; then
2642      echo      echo
2643      exit 1      exit 1
2644  fi  fi
2645  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2646    
2647  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2648      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
# Line 2616  if test "x$OPENAD" != x ; then Line 2651  if test "x$OPENAD" != x ; then
2651      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2652      OADTOOLS="$TOOLSDIR/OAD_support"      OADTOOLS="$TOOLSDIR/OAD_support"
2653      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2654      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2655          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
2656              OAD_DONT_COMPILE=$i"/dontCompile"              OAD_DONT_COMPILE=$i"/dontCompile"
2657              echo "     found $OAD_DONT_COMPILE"              echo "     found $OAD_DONT_COMPILE"
# Line 2624  if test "x$OPENAD" != x ; then Line 2659  if test "x$OPENAD" != x ; then
2659          fi          fi
2660      done      done
2661      echo "  looking for dontTransform file:  "      echo "  looking for dontTransform file:  "
2662      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2663          if test -r $i"/dontTransform" ; then          if test -r $i"/dontTransform" ; then
2664              OAD_DONT_TRANSFORM=$i"/dontTransform"              OAD_DONT_TRANSFORM=$i"/dontTransform"
2665              echo "     found $OAD_DONT_TRANSFORM"              echo "     found $OAD_DONT_TRANSFORM"
# Line 2632  if test "x$OPENAD" != x ; then Line 2667  if test "x$OPENAD" != x ; then
2667          fi          fi
2668      done      done
2669      echo "  looking for keepOriginal file:  "      echo "  looking for keepOriginal file:  "
2670      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2671          if test -r $i"/keepOriginal" ; then          if test -r $i"/keepOriginal" ; then
2672              OAD_KEEP_ORIGINAL=$i"/keepOriginal"              OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2673              echo "     found $OAD_KEEP_ORIGINAL"              echo "     found $OAD_KEEP_ORIGINAL"
# Line 2640  if test "x$OPENAD" != x ; then Line 2675  if test "x$OPENAD" != x ; then
2675          fi          fi
2676      done      done
2677      echo "  looking for cb2mFiles:  "      echo "  looking for cb2mFiles:  "
2678      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2679          if test -r $i"/cb2mFiles" ; then          if test -r $i"/cb2mFiles" ; then
2680              OAD_CB2M_FILES=$i"/cb2mFiles"              OAD_CB2M_FILES=$i"/cb2mFiles"
2681              echo "     found $OAD_CB2M_FILES"              echo "     found $OAD_CB2M_FILES"
# Line 2650  if test "x$OPENAD" != x ; then Line 2685  if test "x$OPENAD" != x ; then
2685      echo "   OpenAD exceptions:  "      echo "   OpenAD exceptions:  "
2686  fi  fi
2687    
2688  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > $TMP.srclinks
2689  echo "" >> srclinks.tmp  echo "" >> $TMP.srclinks
2690  printf 'F77_SRC_FILES = ' > F77srclist.tmp  printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2691  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp  printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2692  printf 'C_SRC_FILES = '   > csrclist.tmp  printf 'C_SRC_FILES = '   > $TMP.csrclist
2693  printf 'F90_SRC_FILES = ' > F90srclist.tmp  printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2694  printf 'H_SRC_FILES = '   > hsrclist.tmp  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2695  printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2696  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2697  for d in $alldirs ; do  for d in $alldirs ; do
2698      deplist=      deplist=
# Line 2667  for d in $alldirs ; do Line 2702  for d in $alldirs ; do
2702          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2703      fi      fi
2704      for sf in $sfiles ; do      for sf in $sfiles ; do
2705          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2706              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2707                  ignore_f=f                  ignore_f=f
2708                  case $d/$sf in                  case $d/$sf in
# Line 2692  for d in $alldirs ; do Line 2727  for d in $alldirs ; do
2727                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2728                              ignore_f=t                              ignore_f=t
2729                          else                          else
2730                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2731                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2732                          fi                          fi
2733                          ;;                          ;;
# Line 2701  for d in $alldirs ; do Line 2736  for d in $alldirs ; do
2736                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2737                      case $extn in                      case $extn in
2738                        F)                        F)
2739                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> $TMP.F77srclist
2740                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> $TMP.F77srclist
2741                          if test "x$OPENAD" = x ; then                          if test "x$OPENAD" = x ; then
2742                              basename=${sf%%.F}                              basename=${sf%%.F}
2743                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2744                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2745                                  echo    " \\"  >> nonADF77srclist.tmp                                  echo    " \\"  >> $TMP.nonADF77srclist
2746                                  printf " $sf" >> nonADF77srclist.tmp                                  printf " $sf" >> $TMP.nonADF77srclist
2747                              fi                              fi
2748                          else #- OpenAD case:                          else #- OpenAD case:
2749                              basename=${sf%%.F}                              basename=${sf%%.F}
2750                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2751                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2752                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2753                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2754                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2755                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2756                                  else                                  else
2757                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2758                                  fi                                  fi
# Line 2732  for d in $alldirs ; do Line 2767  for d in $alldirs ; do
2767                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2768                                  fi                                  fi
2769                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2770                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2771                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2772                                  fi                                  fi
2773                              fi                              fi
2774                          fi                          fi
2775                          ;;                          ;;
2776                      F90)                      F90)
2777                          echo    " \\"  >> F90srclist.tmp                          echo    " \\"  >> $TMP.F90srclist
2778                          printf " $sf" >> F90srclist.tmp                          printf " $sf" >> $TMP.F90srclist
2779                          ;;                          ;;
2780                      c)                      c)
2781                          echo    " \\"  >> csrclist.tmp                          echo    " \\"  >> $TMP.csrclist
2782                          printf " $sf" >> csrclist.tmp                          printf " $sf" >> $TMP.csrclist
2783                          ;;                          ;;
2784                      h)                      h)
2785                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> $TMP.hsrclist
2786                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> $TMP.hsrclist
2787                          ;;                          ;;
2788                      flow)                      flow)
2789                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> $TMP.ad_flow_files
2790                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> $TMP.ad_flow_files
2791                          ;;                          ;;
2792                     esac                     esac
2793                  fi                  fi
# Line 2761  for d in $alldirs ; do Line 2796  for d in $alldirs ; do
2796      done      done
2797      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2798        if test "$d" != "." ; then        if test "$d" != "." ; then
2799          echo "" >> srclinks.tmp          echo "" >> $TMP.srclinks
2800          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2801          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2802  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2803  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2804  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2805          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2806        fi        fi
2807      fi      fi
2808  done  done
2809  rm -rf .links.tmp  rm -rf $TMP.links
2810  echo "" >> F77srclist.tmp  echo "" >> $TMP.F77srclist
2811  echo "" >> nonADF77srclist.tmp  echo "" >> $TMP.nonADF77srclist
2812  echo "" >> csrclist.tmp  echo "" >> $TMP.csrclist
2813  echo "" >> F90srclist.tmp  echo "" >> $TMP.F90srclist
2814  echo "" >> hsrclist.tmp  echo "" >> $TMP.hsrclist
2815  echo "" >> ad_flow_files.tmp  echo "" >> $TMP.ad_flow_files
2816    
2817  CMDLINE=$0  CMDLINE=$0
2818  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
# Line 2879  CPPINCLUDES = ${CPPINCLUDES} Line 2914  CPPINCLUDES = ${CPPINCLUDES}
2914  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2915  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2916  # Optim./debug for FC  # Optim./debug for FC
2917  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}  FFLAGS = ${FFLAGS}
2918  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2919  # Optim./debug for FC  # Optim./debug for FC
2920  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2921  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
# Line 2899  MAKE = ${MAKE} Line 2934  MAKE = ${MAKE}
2934    
2935  EOF  EOF
2936    
2937  cat F77srclist.tmp      >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2938  cat nonADF77srclist.tmp >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2939  cat csrclist.tmp        >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2940  cat F90srclist.tmp      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2941  cat hsrclist.tmp        >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2942  cat ad_flow_files.tmp   >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2943    
2944  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2945    
2946  echo >> $MAKEFILE  echo >> $MAKEFILE
2947    
# Line 2956  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) Line 2991  links: \$(F77_SRC_FILES) \$(C_SRC_FILES)
2991    
2992  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2993    
 output.txt: \$(EXECUTABLE)  
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
   
2994  # remove most of the files that "make" generates  # remove most of the files that "make" generates
2995  clean:  clean:
2996          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
# Line 3103  done Line 3134  done
3134  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3135  echo >> $MAKEFILE  echo >> $MAKEFILE
3136  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3137  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3138  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3139      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3140      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3141  done  done
3142  echo >> $MAKEFILE  echo >> $MAKEFILE
3143  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3144    
3145    if test $CAT_SRC_FOR_TAF = 0 ; then
3146    cat >>$MAKEFILE <<EOF
3147    
3148    # ... Utilities ...
3149    remove_comments:
3150            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3151            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3152    adj_sed:
3153            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3154            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3155    ftl_sed:
3156            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3157            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3158    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3159    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3160    EOF
3161    fi
3162    
3163  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3164    
# Line 3133  ad_input_code.$FS: \$(AD_FILES) \$(AD_FL Line 3182  ad_input_code.$FS: \$(AD_FILES) \$(AD_FL
3182          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3183          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3184    
3185  ad_taf_output.$FS: ad_input_code.$FS  adtafonly:
         @-rm -f ad_input_code_ad.$FS  
3186          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3187          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3188          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3189    
3190  adtafonly:  EOF
3191    
3192    if test $CAT_SRC_FOR_TAF = 1 ; then
3193    cat >>$MAKEFILE <<EOF
3194    # ... send 1 file to TAF ...
3195    ad_taf_output.$FS: ad_input_code.$FS
3196            @-rm -f ad_input_code_ad.$FS ; echo ''
3197          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3198          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3199          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 3147  adtafonly: Line 3201  adtafonly:
3201  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3202          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3203    
3204  ad_tamc_output.$FS: ad_input_code.$FS  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS  
         cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS  
3205    
3206  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
         \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3207    
3208    else
3209    cat >>$MAKEFILE <<EOF
3210    # ... send multiple files to TAF ...
3211    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3212            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3213            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3214            @-rm -f ad_config.template
3215            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3216            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3217            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3218            \$(MAKE) -f \$(MAKEFILE) remove_comments
3219            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3220            \$(MAKE) -f \$(MAKEFILE) adj_sed
3221            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3222    
3223    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3224            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3225            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3226    
3227    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3228            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3229    
3230    EOF
3231    fi
3232    
3233    cat >>$MAKEFILE <<EOF
3234  adonlyfwd:  adonlyfwd:
3235          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3236    
3237  adtrick:  adtrick:
3238          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3239    
3240  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)  ad_tamc_output.$FS: ad_input_code.$FS
3241            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3242            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3243    
3244    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3245            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3246    
3247  # ... FTL ...  # ... FTL ...
3248  ftlall: ftl_exe_target  ftlall: ftl_exe_target
# Line 3182  ftl_input_code.$FS: \$(AD_FILES) Line 3264  ftl_input_code.$FS: \$(AD_FILES)
3264          @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3265          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3266    
3267  ftl_taf_output.$FS: ftl_input_code.$FS  ftltafonly:
         @-rm -f ftl_input_code_tl.$FS  
3268          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3269          ls -l ftl_input_code_tl.$FS          ls -l ftl_input_code_tl.$FS
3270          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3271    
3272  ftltafonly:  EOF
3273    
3274    if test $CAT_SRC_FOR_TAF = 1 ; then
3275    cat >>$MAKEFILE <<EOF
3276    # ... send 1 file to TAF ...
3277    ftl_taf_output.$FS: ftl_input_code.$FS
3278            @-rm -f ftl_input_code_tl.$FS ; echo ''
3279          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3280          ls -l ftl_input_code_tl.$FS          ls -l ftl_input_code_tl.$FS
3281          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
# Line 3196  ftltafonly: Line 3283  ftltafonly:
3283  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3284          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3285    
3286    EOF
3287    
3288    else
3289    cat >>$MAKEFILE <<EOF
3290    # ... send multiple files to TAF ...
3291    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3292            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3293            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3294            @-rm -f ad_config.template
3295            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3296            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3297            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3298            \$(MAKE) -f \$(MAKEFILE) remove_comments
3299            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3300            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3301            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3302    
3303    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3304            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3305            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3306    
3307    EOF
3308    fi
3309    
3310    cat >>$MAKEFILE <<EOF
3311  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3312          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3313          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
# Line 3238  if test "x$OPENAD" != x ; then Line 3350  if test "x$OPENAD" != x ; then
3350  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3351    
3352  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3353    # ... OpenAD ...
3354    
3355  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3356  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
# Line 3277  for i in `cat ${OAD_CB2M_FILES}` ; do Line 3390  for i in `cat ${OAD_CB2M_FILES}` ; do
3390    echo    " \\" >> $MAKEFILE    echo    " \\" >> $MAKEFILE
3391    printf " ${i}_mod.f$FS90" >> $MAKEFILE    printf " ${i}_mod.f$FS90" >> $MAKEFILE
3392  done  done
3393  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3394  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3395    basename=${i%%.f}    basename=${i%%.f}
3396    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
# Line 3287  for i in $AD_FILES ; do Line 3400  for i in $AD_FILES ; do
3400    fi    fi
3401  done  done
3402  echo >> $MAKEFILE  echo >> $MAKEFILE
3403  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3404    
3405  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3406    
3407  adAll: \$(EXE_AD)  adAll: ad_exe_target
3408  .PHONY: adAll  .PHONY: adAll
3409    
3410    ad_exe_target:
3411            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3412            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3413            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3414            @-rm -f ad_config.template
3415            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3416    
3417  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3418    
3419  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
# Line 3310  OAD_active.F90 \ Line 3430  OAD_active.F90 \
3430  OAD_cp.F90 \  OAD_cp.F90 \
3431  OAD_rev.F90 \  OAD_rev.F90 \
3432  OAD_tape.F90 \  OAD_tape.F90 \
3433    OAD_regular_cp.F90 \
3434  revolve.F90  revolve.F90
3435    
3436  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
# Line 3351  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N Line 3472  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N
3472  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
3473  .PHONY: small_f  .PHONY: small_f
3474    
 ad_output.txt: \$(EXE_AD)  
         @printf 'linking data files ... '  
         \$(LN) -f ../input_ad/data* ../input_ad/eedata .  
         \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .  
         @printf 'running ... '  
         @./\$(EXE_AD) > \$@  
   
3475  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3476          cat \$^ > \$@          cat \$^ > \$@
3477    
# Line 3393  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS Line 3507  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS
3507  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3508          \${OADTOOLS}/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3509    
3510  PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F  PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3511  # postprocess F'  # postprocess F'
3512  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3513          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3514          # the target is a placeholder to trigger a single execution of the rule          # the target is a placeholder to trigger a single execution of the rule
3515          touch \$@          touch \$@
3516  # put this so make knows about the postprocessing output  # put this so make knows about the postprocessing output
# Line 3407  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f Line 3521  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f
3521          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3522    
3523  # link the support files:  # link the support files:
3524  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3525          \$(LN) \${OADTOOLS}/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
3526    
3527  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3528    
3529  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3530    
# Line 3446  for i in $NOOPTFILES ; do Line 3560  for i in $NOOPTFILES ; do
3560  done  done
3561    
3562  echo "  Add rules for links"  echo "  Add rules for links"
3563  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3564  rm -f srclinks.tmp  rm -f $TMP.srclinks
3565    
3566  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3567  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE

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