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revision 1.260 by jmc, Thu Aug 22 01:10:53 2013 UTC revision 1.272 by heimbach, Fri Jul 3 21:33:55 2015 UTC
# Line 19  Usage: "$0" [OPTIONS] Line 19  Usage: "$0" [OPTIONS]
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
34    
35      -nooptfile | --nooptfile      -nooptfile | --nooptfile
# Line 1079  EOF Line 1087  EOF
1087  }  }
1088    
1089  check_lapack_libs()  {  check_lapack_libs()  {
1090      if test ! "x$SKIP_LAPACK_CHECK" = x ; then      if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
         return  
     fi  
1091      echo >> $LOGFILE      echo >> $LOGFILE
1092      echo "running: check_lapack_libs()" >> $LOGFILE      echo "running: check_lapack_libs()" >> $LOGFILE
1093      cat <<EOF > genmake_tla.F      cat <<EOF > genmake_tla.F
# Line 1277  GSL= Line 1283  GSL=
1283  DEVEL=  DEVEL=
1284  HAVE_TEST_L=  HAVE_TEST_L=
1285    
1286  # comment this line out to enable lapack test  # set this to "t" to enable lapack test
1287  SKIP_LAPACK_CHECK=t  CHECK_FOR_LAPACK=f
1288    
1289  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1290  HAVE_SYSTEM=  HAVE_SYSTEM=
# Line 1325  FS= Line 1331  FS=
1331  FS90=  FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335    OPENAD_DIVA=
1336  AD_OPTFILE=  AD_OPTFILE=
1337    CAT_SRC_FOR_TAF=1
1338  TAF=  TAF=
1339  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1340  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 1355  gm_s7="TMP THISHOST THISUSER THISDATE TH Line 1364  gm_s7="TMP THISHOST THISUSER THISDATE TH
1364  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1365    
1366  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1367  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1368  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1369  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1370    
# Line 1407  for ac_option in "$@" ; do Line 1416  for ac_option in "$@" ; do
1416          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1417              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1418    
1419            -oad | --oad)
1420                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1421            -nocat4ad | -dog4ad | -ncad | -dad)
1422                CAT_SRC_FOR_TAF=0 ;;
1423          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1424              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1425          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1426              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1427    
1428            -diva | --diva)
1429                OPENAD_DIVA="ALLOW_OPENAD_DIVA=" ;;
1430    
1431          -pdepend | --pdepend)          -pdepend | --pdepend)
1432              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1433          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
# Line 1576  for ac_option in "$@" ; do Line 1592  for ac_option in "$@" ; do
1592    
1593  done  done
1594    
1595  TMP=./genmk_$$  #TMP=./genmk_$$
1596  #- try to put temporary files in system-local /tmp dir  #- try to put temporary files in system-local /tmp dir
1597  #TMP=/tmp/genmk_$$  TMP=/tmp/genmk_${USER}_$$
1598  #touch $TMP ; retVal=$?  touch $TMP ; retVal=$?
1599  #if [ $retVal -eq 0 ] ; then  if [ $retVal -eq 0 ] ; then
1600  #  if test ! -r $TMP ; then TMP=./genmk_$$ ; fi    if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1601  #else  else
1602  #  TMP=./genmk_$$    TMP=./genmk_$$
1603  #fi  fi
1604  #rm -f $TMP  rm -f $TMP
1605  ##echo "  temp files: $TMP.*"  #echo "  temp files: $TMP.*"
1606    
1607  printf "  getting local config information:  "  printf "  getting local config information:  "
1608  if test -f $gm_local ; then  if test -f $gm_local ; then
# Line 1680  fi Line 1696  fi
1696    
1697  echo "  getting AD_OPTFILE information:"  echo "  getting AD_OPTFILE information:"
1698  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1699      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1700            AD_OPTFILE=$MITGCM_AD_OF
1701        elif test "x$OPENAD" = x ; then
1702          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1703      else      else
1704          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1705      fi      fi
1706  fi  fi
1707  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 2356  EOF Line 2374  EOF
2374      fi      fi
2375  fi  fi
2376    
2377  #  Check for package RADTRANS: if LAPACK is not available,  #  Make sure the openad package is enabled if using OpenAD
2378  #  then issue a warning that the direct radtrans solver is not available.  if test "x$OPENAD" != x ; then
2379  if test "x$HAVE_LAPACK" != xt ; then      echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
     echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1  
2380      RETVAL=$?      RETVAL=$?
2381      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" != x0 ; then
2382          cat <<EOF          cat <<EOF
 *********************************************************************  
 WARNING: the "radtrans" package was enabled but tests failed to  
   compile LAPACK applications.  This means that the direct radtrans  
   solver is not available and compilation will fail if it is enabled.  
   If you want to use the direct solver, please check that:  
2383    
   1) LAPACK is correctly installed for this compiler and  
   2) the LIBS variable (within the "optfile") specifies the correct  
      LAPACK library to link against.  
2384  *********************************************************************  *********************************************************************
2385    ERROR: when generating an adjoint with OpenAD, the openad package
2386      must be enabled.  Please add it to packages.conf.
2387    *********************************************************************
2388    
2389  EOF  EOF
2390            exit 1
2391      fi      fi
2392  fi  fi
2393    
# Line 2628  if test "x$OPENAD" != x ; then Line 2642  if test "x$OPENAD" != x ; then
2642      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2643      OADTOOLS="$TOOLSDIR/OAD_support"      OADTOOLS="$TOOLSDIR/OAD_support"
2644      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2645      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2646          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
2647              OAD_DONT_COMPILE=$i"/dontCompile"              OAD_DONT_COMPILE=$i"/dontCompile"
2648              echo "     found $OAD_DONT_COMPILE"              echo "     found $OAD_DONT_COMPILE"
# Line 2636  if test "x$OPENAD" != x ; then Line 2650  if test "x$OPENAD" != x ; then
2650          fi          fi
2651      done      done
2652      echo "  looking for dontTransform file:  "      echo "  looking for dontTransform file:  "
2653      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2654          if test -r $i"/dontTransform" ; then          if test -r $i"/dontTransform" ; then
2655              OAD_DONT_TRANSFORM=$i"/dontTransform"              OAD_DONT_TRANSFORM=$i"/dontTransform"
2656              echo "     found $OAD_DONT_TRANSFORM"              echo "     found $OAD_DONT_TRANSFORM"
# Line 2644  if test "x$OPENAD" != x ; then Line 2658  if test "x$OPENAD" != x ; then
2658          fi          fi
2659      done      done
2660      echo "  looking for keepOriginal file:  "      echo "  looking for keepOriginal file:  "
2661      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2662          if test -r $i"/keepOriginal" ; then          if test -r $i"/keepOriginal" ; then
2663              OAD_KEEP_ORIGINAL=$i"/keepOriginal"              OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2664              echo "     found $OAD_KEEP_ORIGINAL"              echo "     found $OAD_KEEP_ORIGINAL"
# Line 2652  if test "x$OPENAD" != x ; then Line 2666  if test "x$OPENAD" != x ; then
2666          fi          fi
2667      done      done
2668      echo "  looking for cb2mFiles:  "      echo "  looking for cb2mFiles:  "
2669      for i in "." $MODS ; do      for i in "." $MODS $OADTOOLS ; do
2670          if test -r $i"/cb2mFiles" ; then          if test -r $i"/cb2mFiles" ; then
2671              OAD_CB2M_FILES=$i"/cb2mFiles"              OAD_CB2M_FILES=$i"/cb2mFiles"
2672              echo "     found $OAD_CB2M_FILES"              echo "     found $OAD_CB2M_FILES"
# Line 2880  F90C = ${F90C} Line 2894  F90C = ${F90C}
2894  CC = ${CC}  CC = ${CC}
2895  # Link editor  # Link editor
2896  LINK = ${LINK} ${LDADD}  LINK = ${LINK} ${LDADD}
2897    export $OPENAD_DIVA
2898    
2899  # Defines for CPP  # Defines for CPP
2900  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
# Line 2891  CPPINCLUDES = ${CPPINCLUDES} Line 2906  CPPINCLUDES = ${CPPINCLUDES}
2906  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2907  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2908  # Optim./debug for FC  # Optim./debug for FC
2909  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}  FFLAGS = ${FFLAGS}
2910  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM} ${FEXTRAFLAGS}
2911  # Optim./debug for FC  # Optim./debug for FC
2912  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2913  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
# Line 2968  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) Line 2983  links: \$(F77_SRC_FILES) \$(C_SRC_FILES)
2983    
2984  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2985    
 output.txt: \$(EXECUTABLE)  
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
   
2986  # remove most of the files that "make" generates  # remove most of the files that "make" generates
2987  clean:  clean:
2988          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
# Line 3123  done Line 3134  done
3134  echo >> $MAKEFILE  echo >> $MAKEFILE
3135  rm -f $TMP.adSrcFiles  rm -f $TMP.adSrcFiles
3136    
3137    if test $CAT_SRC_FOR_TAF = 0 ; then
3138    cat >>$MAKEFILE <<EOF
3139    
3140    # ... Utilities ...
3141    remove_comments:
3142            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3143            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3144    adj_sed:
3145            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3146            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3147    ftl_sed:
3148            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3149            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3150    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3151    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3152    EOF
3153    fi
3154    
3155  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3156    
3157  # ... AD ...  # ... AD ...
# Line 3145  ad_input_code.$FS: \$(AD_FILES) \$(AD_FL Line 3174  ad_input_code.$FS: \$(AD_FILES) \$(AD_FL
3174          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3175          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3176    
3177  ad_taf_output.$FS: ad_input_code.$FS  adtafonly:
         @-rm -f ad_input_code_ad.$FS ; echo ''  
3178          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3179          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3180          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3181    
3182  adtafonly:  EOF
3183    
3184    if test $CAT_SRC_FOR_TAF = 1 ; then
3185    cat >>$MAKEFILE <<EOF
3186    # ... send 1 file to TAF ...
3187    ad_taf_output.$FS: ad_input_code.$FS
3188            @-rm -f ad_input_code_ad.$FS ; echo ''
3189          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3190          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3191          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 3159  adtafonly: Line 3193  adtafonly:
3193  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3194          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3195    
3196  ad_tamc_output.$FS: ad_input_code.$FS  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS  
         cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS  
3197    
3198  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
3199          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3200    else
3201    cat >>$MAKEFILE <<EOF
3202    # ... send multiple files to TAF ...
3203    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3204            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3205            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3206            @-rm -f ad_config.template
3207            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3208            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3209            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3210            \$(MAKE) -f \$(MAKEFILE) remove_comments
3211            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3212            \$(MAKE) -f \$(MAKEFILE) adj_sed
3213            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3214    
3215    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3216            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3217            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3218    
3219    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3220            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3221    
3222    EOF
3223    fi
3224    
3225    cat >>$MAKEFILE <<EOF
3226  adonlyfwd:  adonlyfwd:
3227          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3228    
3229  adtrick:  adtrick:
3230          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3231    
3232  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)  ad_tamc_output.$FS: ad_input_code.$FS
3233            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3234            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3235    
3236    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3237            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3238    
3239  # ... FTL ...  # ... FTL ...
3240  ftlall: ftl_exe_target  ftlall: ftl_exe_target
# Line 3194  ftl_input_code.$FS: \$(AD_FILES) Line 3256  ftl_input_code.$FS: \$(AD_FILES)
3256          @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3257          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3258    
3259  ftl_taf_output.$FS: ftl_input_code.$FS  ftltafonly:
         @-rm -f ftl_input_code_tl.$FS ; echo ''  
3260          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3261          ls -l ftl_input_code_tl.$FS          ls -l ftl_input_code_tl.$FS
3262          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3263    
3264  ftltafonly:  EOF
3265    
3266    if test $CAT_SRC_FOR_TAF = 1 ; then
3267    cat >>$MAKEFILE <<EOF
3268    # ... send 1 file to TAF ...
3269    ftl_taf_output.$FS: ftl_input_code.$FS
3270            @-rm -f ftl_input_code_tl.$FS ; echo ''
3271          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3272          ls -l ftl_input_code_tl.$FS          ls -l ftl_input_code_tl.$FS
3273          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
# Line 3208  ftltafonly: Line 3275  ftltafonly:
3275  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3276          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3277    
3278    EOF
3279    
3280    else
3281    cat >>$MAKEFILE <<EOF
3282    # ... send multiple files to TAF ...
3283    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3284            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3285            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3286            @-rm -f ad_config.template
3287            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3288            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3289            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3290            \$(MAKE) -f \$(MAKEFILE) remove_comments
3291            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3292            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3293            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3294    
3295    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3296            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3297            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3298    
3299    EOF
3300    fi
3301    
3302    cat >>$MAKEFILE <<EOF
3303  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3304          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3305          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
# Line 3250  if test "x$OPENAD" != x ; then Line 3342  if test "x$OPENAD" != x ; then
3342  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3343    
3344  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3345    # ... OpenAD ...
3346    
3347  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3348  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
# Line 3303  rm -f $TMP.adSrcFiles Line 3396  rm -f $TMP.adSrcFiles
3396    
3397  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3398    
3399  adAll: \$(EXE_AD)  adAll: ad_exe_target
3400  .PHONY: adAll  .PHONY: adAll
3401    
3402    ad_exe_target:
3403            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3404            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3405            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3406            @-rm -f ad_config.template
3407            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3408    
3409  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3410    
3411  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
# Line 3322  OAD_active.F90 \ Line 3422  OAD_active.F90 \
3422  OAD_cp.F90 \  OAD_cp.F90 \
3423  OAD_rev.F90 \  OAD_rev.F90 \
3424  OAD_tape.F90 \  OAD_tape.F90 \
3425    OAD_regular_cp.F90 \
3426  revolve.F90  revolve.F90
3427    
3428  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
# Line 3363  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N Line 3464  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N
3464  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
3465  .PHONY: small_f  .PHONY: small_f
3466    
 ad_output.txt: \$(EXE_AD)  
         @printf 'linking data files ... '  
         \$(LN) -f ../input_ad/data* ../input_ad/eedata .  
         \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .  
         @printf 'running ... '  
         @./\$(EXE_AD) > \$@  
   
3467  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3468          cat \$^ > \$@          cat \$^ > \$@
3469    

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