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revision 1.136 by edhill, Thu Nov 24 17:52:15 2005 UTC revision 1.270 by jmc, Tue Feb 24 17:34:54 2015 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -nooptfile | --nooptfile
36          -optfile NAME | --optfile NAME | -of NAME | --of NAME
37          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
38              Use "NAME" as the optfile.  By default, an attempt will be
39              made to find an appropriate "standard" optfile in the
40              tools/build_options/ directory.
41    
42        -pdepend NAME | --pdepend NAME
43          -pdepend=NAME | --pdepend=NAME
44              Get package dependency information from "NAME".
45    
46        -pgroups NAME | --pgroups NAME
47          -pgroups=NAME | --pgroups=NAME
48              Get the package groups information from "NAME".
49    
50        -bash NAME
51              Explicitly specify the Bourne or BASH shell to use
52    
53        -make NAME | -m NAME
54          --make=NAME | -m=NAME
55              Use "NAME" for the MAKE program. The default is "make" but
56              many platforms, "gmake" is the preferred choice.
57    
58        -makefile NAME | -mf NAME
59          --makefile=NAME | -mf=NAME
60              Call the makefile "NAME".  The default is "Makefile".
61    
62        -makedepend NAME | -md NAME
63          --makedepend=NAME | -md=NAME
64              Use "NAME" for the MAKEDEPEND program.
65    
66        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
67          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
68              Specify the location of the MITgcm ROOTDIR as "NAME".
69              By default, genamke will try to find the location by
70              looking in parent directories (up to the 5th parent).
71    
72        -mods NAME | --mods NAME | -mo NAME | --mo NAME
73          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
74              Here, "NAME" specifies a list of directories that are
75              used for additional source code.  Files found in the
76              "mods list" are given preference over files of the same
77              name found elsewhere.
78    
79        -disable NAME | --disable NAME
80          -disable=NAME | --disable=NAME
81              Here "NAME" specifies a list of packages that we don't
82              want to use.  If this violates package dependencies,
83              genamke will exit with an error message.
84    
85        -enable NAME | --enable NAME
86          -enable=NAME | --enable=NAME
87              Here "NAME" specifies a list of packages that we wish
88              to specifically enable.  If this violates package
89              dependencies, genamke will exit with an error message.
90    
91        -standarddirs NAME | --standarddirs NAME
92          -standarddirs=NAME | --standarddirs=NAME
93              Here, "NAME" specifies a list of directories to be
94              used as the "standard" code.
95    
96        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
97          -fc=NAME | --fc=NAME
98              Use "NAME" as the fortran compiler.  By default, genmake
99              will search for a working compiler by trying a list of
100              "usual suspects" such as g77, f77, etc.
101    
102        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
103              Use "NAME" as the C compiler.  By default, genmake
104              will search for a working compiler by trying a list of
105              "usual suspects" such as gcc, c89, cc, etc.
106    
107        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
108              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
109              *only* works if CPP_EEOPTIONS.h allows this.
110    
111        -ignoretime | -ignore_time | --ignoretime | --ignore_time
112              Ignore all the "wall clock" routines entirely.  This will
113              not in any way hurt the model results -- it simply means
114              that the code that checks how long the model spends in
115              various routines will give junk values.
116    
117        -ts | --ts
118              Produce timing information per timestep
119        -papis | --papis
120              Produce summary MFlop/s (and IPC) with PAPI per timestep
121        -pcls | --pcls
122              Produce summary MFlop/s etc. with PCL per timestep
123        -foolad | --foolad
124              Fool the AD code generator
125        -papi | --papi
126              Performance analysis with PAPI
127        -pcl | --pcl
128              Performance analysis with PCL
129        -hpmt | --hpmt
130              Performance analysis with the HPM Toolkit
131    
132        -ieee | --ieee
133              use IEEE numerics.  Note that this option *only* works
134              if it is supported by the OPTFILE that is being used.
135        -devel | --devel
136              Add additional warning and debugging flags for development
137              (if supported by the OPTFILE); also switch to IEEE numerics.
138        -gsl | --gsl
139              Use GSL to control floating point rounding and precision
140    
141        -mpi | --mpi
142              Include MPI header files and link to MPI libraries
143        -mpi=PATH | --mpi=PATH
144              Include MPI header files and link to MPI libraries using MPI_ROOT
145              set to PATH. i.e. Include files from \$PATH/include, link to libraries
146              from \$PATH/lib and use binaries from \$PATH/bin.
147    
148        -omp | --omp
149              Activate OpenMP code + use Compiler option OMPFLAG
150        -omp=OMPFLAG | --omp=OMPFLAG
151              Activate OpenMP code + use Compiler option OMPFLAG
152    
153        -es | --es | -embed-source | --embed-source
154              Embed a tarball containing the full source code
155              (including the Makefile, etc.) used to build the
156              executable [off by default]
157    
158        -ds | --ds
159              Report genmake internal variables status (DUMPSTATE)
160              to file "genmake_state" (for debug purpose)
161    
162      While it is most often a single word, the "NAME" variables specified
163      above can in many cases be a space-delimited string such as:
164    
165        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
166        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
167        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
168    
169      which, depending upon your shell, may need to be single-quoted.
170    
171      For more detailed genmake documentation, please see:
172    
173        http://mitgcm.org/public/devel_HOWTO/
174    
175    EOF
176    
177        exit 1
178    }
179    
180  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
181  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
182  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
183      cpp_options=$1      cpp_options=$1
184      pkg=$2      pkg=$2
185      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
186      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
187      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
189  }  }
190    
191  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
192  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
193  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
194      cpp_options=$1      cpp_options=$1
195      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
196      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI" || exit 99      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI" || exit 99  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI" || exit 99  
197  }  }
198    
199  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 34  test_for_mpi_in_cpp_eeoptions() { Line 201  test_for_mpi_in_cpp_eeoptions() {
201  test_for_string_in_file() {  test_for_string_in_file() {
202      file=$1      file=$1
203      strng=$2      strng=$2
204      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
205      RETVAL=$?      RETVAL=$?
206      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
207          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
208          grep -i "$strng" $file          grep -i "$strng" $file
209          return 1          exit 99
210      fi      fi
211      return 0      return 0
212  }  }
# Line 48  test_for_string_in_file() { Line 215  test_for_string_in_file() {
215  # the package list.  # the package list.
216  expand_pkg_groups() {  expand_pkg_groups() {
217      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
218      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
219          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221          matched=0          matched=0
222          for i in $PACKAGES ; do          for i in $PACKAGES ; do
223              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
224              RETVAL=$?              RETVAL=$?
225              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
226                  matched=1                  matched=1
227                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
228                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
229                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
230              else              else
231                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
232              fi              fi
233          done          done
234          PACKAGES=$new_packages          PACKAGES=$new_packages
235          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
236          return $matched          return $matched
237      else      else
238          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 102  EOF Line 268  EOF
268              check_for_broken_Ff              check_for_broken_Ff
269          else          else
270              cat <<EOF 2>&1              cat <<EOF 2>&1
271  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
272    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
273    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
274    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
275    
276  EOF  EOF
# Line 129  EOF Line 295  EOF
295  .F.$tfs:  .F.$tfs:
296          $LN \$< \$@          $LN \$< \$@
297  EOF  EOF
298      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
299      RETVAL=$?      RETVAL=$?
300      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
301          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 137  EOF Line 303  EOF
303              FS90='fr9'              FS90='fr9'
304              check_for_broken_Ff              check_for_broken_Ff
305          else          else
306              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
307  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
308    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
309    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
310    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
311                echo ""
 EOF  
312              exit -1              exit -1
313              return              return
314          fi          fi
# Line 157  EOF Line 322  EOF
322      return      return
323  }  }
324    
   
325  look_for_makedepend()  {  look_for_makedepend()  {
326    
327      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 168  look_for_makedepend()  { Line 332  look_for_makedepend()  {
332      #      #
333      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
334      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
335      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
336      #      #
337      #  So the choices are, in order:      #  So the choices are, in order:
     #  
338      #    1) use the user-specified program      #    1) use the user-specified program
339      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
340      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
341      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
342        #             (faster, but can miss some dependencies)
343      #      #
344        echo >> $LOGFILE
345        echo "running: look_for_makedepend()" >> $LOGFILE
346        if test "x${MAKEDEPEND}" != x ; then
347            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
348            RETVAL=$?
349            if test x"$RETVAL" = x0 ; then
350                build_cyrus_makedepend
351                RETVAL=$?
352                if test "x$RETVAL" != x0 ; then
353                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
354                    MAKEDEPEND=
355                fi
356            else
357                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
358                RETVAL=$?
359                if test "x$RETVAL" = x0 ; then
360                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
361                fi
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
366          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
367          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
368          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
369  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
370  #  #
371  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
372  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
373  #   empty one to find and parse.  #   empty one to find and parse.
374  EOF  EOF
375          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 196  EOF Line 378  EOF
378        stop        stop
379        end        end
380  EOF  EOF
381          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
382          RV1=$?          RV1=$?
383            which makedepend > /dev/null 2>&1
384            RV2=$?
385            if test "x${RV2}" = x0 ; then
386                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
387                RV3=$? ; loc_msg='not working.'
388            else RV3=$RV2 ; loc_msg='not found.'
389            fi
390          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
391          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
392          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
393            if test "x${RV1}" = x0 ; then
394                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            elif test "x${RV3}" = x0 ; then
397                echo "    local tools/xmakedepend not working. Use system-default makedepend"
398              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
399                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
400          else          else
401              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
402                            echo -n "    Try to build cyrus-makedepend ..."
403              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
404              build_cyrus_makedepend              build_cyrus_makedepend
405              RETVAL=$?              RETVAL=$?
406              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
407                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
408                else
409                    echo "  Fails" ; echo "" >> $LOGFILE
410                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
411                    echo ""
412                    exit -1
413                    return
414              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
415          fi          fi
416      fi      fi
417  }  }
418    
   
419  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
420        echo >> $LOGFILE
421        echo "running: build_cyrus_makedepend()" >> $LOGFILE
422      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
423      (      (
424          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
425              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
426              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
427          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
428              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
429          fi          fi
# Line 241  build_cyrus_makedepend()  { Line 435  build_cyrus_makedepend()  {
435      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
436      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
437          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
438            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
439          return 0          return 0
440      else      else
441          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
442          return 1          return 1
443      fi      fi
444  }  }
445    
446  # Guess possible config options for this host  build_embed_encode()
447  find_possible_configs()  {  {
448        printf "  building the embed-encode utility...  "
449      tmp1=`uname`"_"`uname -m`      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
450      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
451      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`              echo
452      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
453      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`              echo
454      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`              EMBED_SRC=f
455      PLATFORM=$tmp3              return 1
456      echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32          fi
457      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`          clist="cc gcc c89 $CC"
458      echo "  The platform appears to be:  $PLATFORM"          for ic in $clist ; do
459                    comm="$ic -o encode_files encode_files.c"
460      echo "test" > test              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
461      ln -s ./test link              RETVAL=$?
462      RETVAL=$?              if test "x$RETVAL" = x0 ; then
463      if test "x${RETVAL}" = x0 ; then                  echo "OK"
464          LN="ln -s"                  return 0
465      else              fi
466          echo "Error: \"ln -s\" does not appear to work on this system!"          done
467          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          echo
468          exit 1          echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
469      fi          echo "      so it has been disabled"
470      rm -f test link          echo
471            EMBED_SRC=f
472      if test "x$CPP" = x ; then          return 1
         CPP="cpp -traditional -P"  
473      fi      fi
474        echo "OK"
475    }
476    
477      look_for_makedepend  #  look for possible C compilers
478    look_for_C_compilers() {
479      #================================================================      echo >> $LOGFILE
480      #  look for possible C compilers      echo "running: look_for_C_compilers()" >> $LOGFILE
481      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"      rm -f ./genmake_hello.c  ./genmake_hello
482      p_CC=      cat >> genmake_hello.c << EOF
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
483  #include <stdio.h>  #include <stdio.h>
484  int main(int argc, char **argv) {  int main(int argc, char **argv) {
485    printf("Hello!\n");    printf("Hello!\n");
486    return 0;    return 0;
487  }  }
488  EOF  EOF
489          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
490        p_CC=
491        for c in $tmp ; do
492            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
493            echo $COMM >> $LOGFILE
494            $COMM >> $LOGFILE 2>&1
495          RETVAL=$?          RETVAL=$?
496          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
497                echo " $c test successful" >> $LOGFILE
498              p_CC="$p_CC $c"              p_CC="$p_CC $c"
499          fi          fi
500      done      done
# Line 311  Error: No C compilers were found in your Line 510  Error: No C compilers were found in your
510  EOF  EOF
511          exit 1          exit 1
512      else      else
513          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
514          if test "x$CC" = x ; then          if test "x$CC" = x ; then
515              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
516              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
517          fi          fi
518      fi      fi
519        echo " --> set CC='$CC'" >> $LOGFILE
520    }
521    
522    # Guess possible config options for this host
523    find_possible_optfile()  {
524    
525        echo >> $LOGFILE
526        echo "running: find_possible_optfile()" >> $LOGFILE
527        tmp1=`uname`"_"`uname -m`
528        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
529        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
530        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
531        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
532        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
533        PLATFORM=$tmp3
534        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
535        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
536        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
537    
538      #================================================================      #================================================================
539      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
540      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
541        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
542      p_FC=      p_FC=
543      for c in $tmp ; do      rm -f ./genmake_hello.f
544          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
545        program hello        program hello
546        do i=1,3        do i=1,3
547          print *, 'hello world : ', i          print *, 'hello world : ', i
548        enddo        enddo
549        end        end
550  EOF  EOF
551          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
552            COMM="$f -o genmake_hello genmake_hello.f"
553            echo $COMM >> $LOGFILE
554            $COMM >> $LOGFILE 2>&1
555          RETVAL=$?          RETVAL=$?
556          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
557              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
558                p_FC="$p_FC $f"
559          fi          fi
560      done      done
561      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
562      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
563          cat 1>&2 <<EOF          cat 1>&2 <<EOF
564    
# Line 351  Error: No Fortran compilers were found i Line 571  Error: No Fortran compilers were found i
571  EOF  EOF
572          exit 1          exit 1
573      else      else
574          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
575      fi      fi
576    
577      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 361  EOF Line 580  EOF
580          for i in $p_FC ; do          for i in $p_FC ; do
581              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
582              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
583                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
584                  break                  break
585              fi              fi
586          done          done
# Line 370  EOF Line 589  EOF
589      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
590          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
591          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
592               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
593          fi          fi
594      fi      fi
595  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
596      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
597          cat 1>&2 <<EOF          cat 1>&2 <<EOF
598    
# Line 399  Error: No options file was found in:  $R Line 608  Error: No options file was found in:  $R
608  EOF  EOF
609          exit 1          exit 1
610      fi      fi
611        }
612  #     # look for possible MPI libraries  
613  #     mpi_libs=  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
614  #     mpi_fort=`which mpif77 2>/dev/null`  #  checking for additional included headers (in case of chain of included header)
615  #     RETVAL=$?  mpi_headers_do_local_copy() {
616  #     if test "x${RETVAL}" = x0 ; then  
617  #       cat >>test.f <<EOF      dBug=0
618  #       PROGRAM HELLO      rm -rf ./mpi_headers
619  #       DO 10, I=1,10      if test -d $MPIINCLUDEDIR ; then
620  #       PRINT *,'Hello World'  
621  #    10 CONTINUE          #----- check for additional headers (chain of included headers)
622  #       STOP          echo -n '  Check MPI headers ... '
623  #       END          listIni=$MPI_HEADER_FILES
624  # EOF          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
625  #       eval "$mpi_fort -showme test.f > out"          outp=$?
626  #       RETVAL=$?          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
627  #       if test "x${RETVAL}" = x0 ; then          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
628  #           a=`cat out`          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
629  #           for i in $a ; do  
630  #               case $i in          doCheck=1 ; list2copy='' ; list2check=$listIni
631  #                   -*)          while test $doCheck = 1 ; do
632  #                       mpi_libs="$mpi_libs $i" ;;            newList=''
633  #               esac            for i in $list2check ; do
634  #           done              if test -f $MPIINCLUDEDIR/$i ; then
635  #           echo "The MPI libs appear to be:"                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
636  #           echo "  "$mpi_libs                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
637  #       fi                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
638  #       rm -f test.f out                for j in $newInc ; do
639  #     fi                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
640                    outp=$?
641                    if test $outp != 0 ; then
642                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
643                      newList="$newList $j"
644                    fi
645                  done
646                  if test $dBug = 1 ; then echo "" ; fi
647                fi
648              done
649              if test "x$newList" = x ; then doCheck=0
650              else list2check=$newList ; list2copy="$list2copy $newList"
651              fi
652            done
653            list2copy="$MPI_HEADER_FILES $list2copy"
654            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
655    
656            #----- create local mpi_headers dir if we have files to copy
657            mkListInc=`echo $list2copy | wc -w`
658            if test $mkListInc != 0 ; then
659              echo 'create local "./mpi_headers" dir'
660              mkdir -p ./mpi_headers
661              INCLUDES="-I./mpi_headers $INCLUDES"
662              mkListInc=1
663            fi
664            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
665    
666            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
667            for i in $list2copy ; do
668              if test -f $MPIINCLUDEDIR/$i ; then
669                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
670                if test $i = 'mpif.h' ; then
671                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
672                fi
673                if test $mkListInc = 2 ; then
674                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
675                fi
676                if test $mkListInc = 1 ; then
677                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
678                fi
679              fi
680            done
681        else
682            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
683            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
684    #       exit -1
685        fi
686  }  }
687    
688  #  Parse the package dependency information  #  Parse the package dependency information
# Line 437  get_pdepend_list()  { Line 691  get_pdepend_list()  {
691      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
692      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
693      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
694          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
695          > ./.pd_tmp          > ./.pd_tmp
696        RETVAL=$?
697        if test ! "x${RETVAL}" = x0 ; then
698          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
699          exit 1
700        fi
701      . ./.pd_tmp      . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ts | --ts  
           Produce timing information per timestep  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
703  }  }
704    
705  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 571  get_fortran_c_namemangling()  { Line 707  get_fortran_c_namemangling()  {
707    
708      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
710          return 0          return 0
711      fi      fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
715        
716      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
717  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
718  EOF  EOF
719      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722      RETVAL=$?      RETVAL=$?
723      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
724          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
725          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
726    
727  WARNING: C test compile fails   WARNING: C test compile fails
728  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730  EOF  EOF
731          return 1          return 1
732      fi      fi
# Line 595  EOF Line 734  EOF
734      RETVAL=$?      RETVAL=$?
735      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
736          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
737          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
738    
739  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
740  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742  EOF  EOF
743          return 1          return 1
744      fi      fi
# Line 609  EOF Line 748  EOF
748        call tsub( string )        call tsub( string )
749        end        end
750  EOF  EOF
751      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754      RETVAL=$?      RETVAL=$?
755      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
756          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
757          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
758    
759  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762  EOF  EOF
763          return 1          return 1
764      fi      fi
# Line 625  EOF Line 766  EOF
766      RETVAL=$?      RETVAL=$?
767      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
768          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
769          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
770    
771  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
772  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774  EOF  EOF
775          return 1          return 1
776      fi      fi
# Line 655  EOF Line 796  EOF
796    
797      #  cleanup the testing files      #  cleanup the testing files
798      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
799    
800        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801    }
802    
803  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806      get_fortran_c_namemangling      get_fortran_c_namemangling
807      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
808  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 675  void FC_NAMEMANGLE(cloc) ( double *curti Line 819  void FC_NAMEMANGLE(cloc) ( double *curti
819   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
820  }  }
821  EOF  EOF
822      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> $LOGFILE
824        $COMM >> $LOGFILE 2>&1
825      RET_C=$?      RET_C=$?
826      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
827        program hello        program hello
# Line 685  EOF Line 831  EOF
831        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
832        end        end
833  EOF  EOF
834      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> $LOGFILE
836        $COMM >> $LOGFILE 2>&1
837      RET_F=$?      RET_F=$?
838      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839      RETVAL=$?      RETVAL=$?
840      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
841          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
842      fi      fi
843      rm -f genmake_tc*      rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845    }
846    
847    check_HAVE_SIGREG()  {
848        if test ! "x$HAVE_SIGREG" = x ; then
849            return
850        fi
851        echo >> $LOGFILE
852        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853        get_fortran_c_namemangling
854        cat <<EOF > genmake_tc_1.c
855    $FC_NAMEMANGLE
856    #include <stdlib.h>
857    #include <stdio.h>
858    #include <signal.h>
859    #include <errno.h>
860    #include <ucontext.h>
861    
862    int * ip;
863    
864    static void killhandler(
865        unsigned int sn, siginfo_t  si, struct ucontext *sc )
866    {
867        *ip = *ip + 1;
868        return;
869  }  }
870    
871    void FC_NAMEMANGLE(sigreg) (int * aip)
872    {
873        struct sigaction s;
874        ip = aip;
875        s.sa_flags = SA_SIGINFO;
876        s.sa_sigaction = (void *)killhandler;
877        if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
878            printf("Sigaction returned error = %d\n", errno);
879            exit(0);
880        }
881        return;
882    }
883    EOF
884        COMM="$CC $CFLAGS -c genmake_tc_1.c"
885        echo $COMM >> $LOGFILE
886        $COMM >> $LOGFILE 2>&1
887        RET_C=$?
888        cat <<EOF > genmake_tc_2.$FS
889          program hello
890          integer anint
891          common /iv/ anint
892          external sigreg
893          call sigreg(anint)
894          end
895    EOF
896        cat genmake_tc_2.$FS >> $LOGFILE
897        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898        echo $COMM >> $LOGFILE
899        $COMM >> $LOGFILE 2>&1
900        RETVAL=$?
901        if test "x$RETVAL" = x0 ; then
902            HAVE_SIGREG=t
903        fi
904        rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906    }
907    
908  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
909        if test ! "x$HAVE_SETRLSTK" = x ; then
910            return
911        fi
912        echo >> $LOGFILE
913        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914      get_fortran_c_namemangling      get_fortran_c_namemangling
915      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
916  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 713  void FC_NAMEMANGLE(setrlstk) () Line 926  void FC_NAMEMANGLE(setrlstk) ()
926      return;      return;
927  }  }
928  EOF  EOF
929      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
930        echo $COMM >> $LOGFILE
931        $COMM >> $LOGFILE 2>&1
932      RET_C=$?      RET_C=$?
933      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
934        program hello        program hello
# Line 721  EOF Line 936  EOF
936        call setrlstk()        call setrlstk()
937        end        end
938  EOF  EOF
939      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
940      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
942      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
943      RETVAL=$?      RETVAL=$?
944      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
945          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
946      fi      fi
947      rm -f genmake_tc*      rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949  }  }
950    
   
951  check_HAVE_STAT()  {  check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954      get_fortran_c_namemangling      get_fortran_c_namemangling
955      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
956  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 757  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 971  void FC_NAMEMANGLE(tfsize) ( int *nbyte
971          *nbyte = -1;          *nbyte = -1;
972  }  }
973  EOF  EOF
974      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
975        echo $COMM >> $LOGFILE
976        $COMM >> genmake_tc.log 2>&1
977      RET_C=$?      RET_C=$?
978      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
979        program hello        program hello
# Line 766  EOF Line 982  EOF
982        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
983        end        end
984  EOF  EOF
985      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
986      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
988      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
989      RETVAL=$?      RETVAL=$?
990      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
991          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
992      fi      fi
993      rm -f genmake_tc*      rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995  }  }
996    
   
997  check_netcdf_libs()  {  check_netcdf_libs()  {
998      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999          return          return
1000      fi      fi
1001      echo >> genmake_warnings      echo >> $LOGFILE
1002      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
1003      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
1004        program fgennc        program fgennc
1005  #include "netcdf.inc"  #include "netcdf.inc"
1006  EOF  EOF
1007      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1008          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1009      fi     #fi
1010      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1011        integer iret, ncid, xid        integer iret, ncid, xid
1012        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 804  EOF Line 1017  EOF
1017        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018        end        end
1019  EOF  EOF
1020      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1022      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023      RET_CPP=f      RET_CPP=f
1024      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
1026      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1027      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
1028          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
1029              >> genmake_tnc.log              >> genmake_tnc.log
# Line 818  EOF Line 1031  EOF
1031              >> genmake_tnc.log              >> genmake_tnc.log
1032      fi      fi
1033      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1034      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1035      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037      RET_COMPILE=$?      RET_COMPILE=$?
1038      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1039    
1040      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1041      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 833  EOF Line 1046  EOF
1046    
1047      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1048          HAVE_NETCDF=t          HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050      else      else
1051          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1052          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1056          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1057              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059          RET_COMPILE=$?          RET_COMPILE=$?
1060          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1063              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1064              HAVE_NETCDF=t              HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066            else
1067            # try again with "-lnetcdff" added to the libs
1068                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1072                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1073                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075                RET_COMPILE=$?
1076                echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078                if test "x$RET_COMPILE" = x0 ; then
1079                    LIBS="$LIBS -lnetcdff -lnetcdf"
1080                    HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082                fi
1083          fi          fi
1084      fi      fi
1085      rm -f genmake_tnc*      rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087  }  }
1088    
1089    check_lapack_libs()  {
1090        if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091        echo >> $LOGFILE
1092        echo "running: check_lapack_libs()" >> $LOGFILE
1093        cat <<EOF > genmake_tla.F
1094          program fgenla
1095          integer info
1096          integer ipiv( 2 )
1097          double precision ab( 4, 2 ), b( 2 )
1098          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099          data b / 1., 1. /
1100          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101          IF (info .NE. 0) write(*,*) 'Error:', info
1102          write(*,*) b
1103          end
1104    EOF
1105        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106        cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188    }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228    }
1229    
1230  ###############################################################################  ###############################################################################
1231  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 875  ENABLE= Line 1248  ENABLE=
1248  DISABLE=  DISABLE=
1249  # MAKEFILE=  # MAKEFILE=
1250  # MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  DUMPSTATE=t  PKG_GROUPS=
1253  PDEFAULT=  DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258    FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
# Line 892  NOOPTFILES= Line 1269  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270  MPI=  MPI=
1271  MPIPATH=  MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275  TS=  TS=
1276    PAPIS=
1277    PCLS=
1278    FOOLAD=
1279    PAPI=
1280    PCL=
1281    HPMT=
1282    GSL=
1283    DEVEL=
1284  HAVE_TEST_L=  HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1290  HAVE_SYSTEM=  HAVE_SYSTEM=
1291  HAVE_FDATE=  HAVE_FDATE=
1292  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1293  HAVE_CLOC=  HAVE_CLOC=
1294  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1295  HAVE_STAT=  HAVE_STAT=
1296  HAVE_NETCDF=  HAVE_NETCDF=
1297  HAVE_ETIME=  HAVE_ETIME=
1298  IGNORE_TIME=  IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
# Line 912  SOURCEDIRS= Line 1305  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311  G2ARGS=  G2ARGS=
1312  BASH=  BASH=
1313  PWD=`pwd`  PWD=`pwd`
1314  test "x$MAKE" = x  &&  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1315  test "x$AWK" = x   &&  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1316    EMBED_SRC=
1317  THISHOST=`hostname`  THISHOST=`hostname`
1318  THISCWD=`pwd`  THISCWD=`pwd`
1319  THISDATE=`date`  THISDATE=`date`
# Line 926  MACHINE=`uname -a` Line 1323  MACHINE=`uname -a`
1323  EXECUTABLE=  EXECUTABLE=
1324  EXEHOOK=  EXEHOOK=
1325  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1326  IEEE=  IEEE=
1327  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1328      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 935  FS= Line 1331  FS=
1331  FS90=  FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337  TAF=  TAF=
1338  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1339  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 947  FTL_TAF_FLAGS= Line 1345  FTL_TAF_FLAGS=
1345  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1346  TAMC_EXTRA=  TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1354  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355  gm_s2="FC CPP IEEE TS MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1359  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373  cat <<EOF  cat <<EOF
1374    
1375  GENMAKE :  GENMAKE :
1376    
1377  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1378  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1381    
1382  EOF  EOF
1383    
1384    LOGFILE="genmake.log"
1385    #- clean-up previous genmake logfiles:
1386    rm -f genmake_state genmake_*optfile $LOGFILE
1387    
1388  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1389    
1390  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1391  #parse_options  #parse_options
1392  ac_prev=  ac_prev=
1393  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1018  for ac_option in "$@" ; do Line 1400  for ac_option in "$@" ; do
1400          ac_prev=          ac_prev=
1401          continue          continue
1402      fi      fi
1403        
1404      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405        
1406      case $ac_option in      case $ac_option in
1407            
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410            
1411          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1412              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1413          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1414              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1415          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1416              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1417            
1418            -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1423              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1424          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1425              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1426            
1427          -pdepend | --pdepend)          -pdepend | --pdepend)
1428              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1429          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1430              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1431            
1432          -pdefault | --pdefault)          -pgroups | --pgroups)
1433              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1434          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1435              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1436            
1437          -make | --make | -m | --m)          -make | --make | -m | --m)
1438              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1439          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1440              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1441            
1442          -bash | --bash)          -bash | --bash)
1443              ac_prev=BASH ;;              ac_prev=BASH ;;
1444          -bash=* | --bash=*)          -bash=* | --bash=*)
1445              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1446            
1447          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1448              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1449          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1450              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1451            
1452          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1453              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1454          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1455              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1456            
1457          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1458              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1459              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1460              echo              echo
1461              usage              usage
1462              ;;              ;;
1463            
1464          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1465              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1466          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1467              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1468            
1469          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1470              ac_prev=MODS ;;              ac_prev=MODS ;;
1471          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1472              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1473            
1474          -disable | --disable)          -disable | --disable)
1475              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1476          -disable=* | --disable=*)          -disable=* | --disable=*)
1477              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1478            
1479          -enable | --enable)          -enable | --enable)
1480              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1481          -enable=* | --enable=*)          -enable=* | --enable=*)
1482              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1483            
1484          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1485              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1486          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1104  for ac_option in "$@" ; do Line 1490  for ac_option in "$@" ; do
1490  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1491  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1492  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1493            
1494          -cc | --cc)          -cc | --cc)
1495              ac_prev=CC ;;              ac_prev=CC ;;
1496          -cc=* | --cc=*)          -cc=* | --cc=*)
1497              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1498            
1499          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1500              ac_prev=FC ;;              ac_prev=FC ;;
1501          -fc=* | --fc=*)          -fc=* | --fc=*)
1502              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1503            
1504          -fs | --fs)          -fs | --fs)
1505              ac_prev=FS ;;              ac_prev=FS ;;
1506          -fs=* | --fs=*)          -fs=* | --fs=*)
1507              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1508            
1509          -fs90 | --fs90)          -fs90 | --fs90)
1510              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1511          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1512              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1513            
1514            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1515                USE_R4=true ;;
1516    
1517          -ieee | --ieee)          -ieee | --ieee)
1518              IEEE=true ;;              IEEE=true ;;
1519          -noieee | --noieee)          -noieee | --noieee)
1520              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1521            -devel | --devel)
1522                IEEE=true ; DEVEL=true ;;
1523            -gsl | --gsl)
1524                GSL=true ;;
1525    
1526          -ts | --ts)          -ts | --ts)
1527              TS=true ;;              TS=true ;;
1528            -papis | --papis)
1529                PAPIS=true ;;
1530            -pcls | --pcls)
1531                PCLS=true ;;
1532            -foolad | --foolad)
1533                FOOLAD=true ;;
1534            -papi | --papi)
1535                PAPI=true ;;
1536            -pcl | --pcl)
1537                PCL=true ;;
1538            -hpmt | --hpmt)
1539                HPMT=true ;;
1540    
1541          -mpi | --mpi)          -mpi | --mpi)
1542              MPI=true ;;              MPI=true ;;
1543          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1544              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1545              MPI=true ;;              MPI=true ;;
1546            
1547  #       -jam | --jam)          -omp | --omp)
1548  #           JAM=1 ;;              OMP=true ;;
1549  #       -nojam | --nojam)          -omp=* | --omp=*)
1550  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1551                        OMP=true ;;
1552    
1553          -ds | --ds)          -ds | --ds)
1554              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1555            
1556            -extra_flag | --extra_flag)
1557                ac_prev=FEXTRAFLAGS ;;
1558            -extra_flag=* | --extra_flag=*)
1559                FEXTRAFLAGS=$ac_optarg ;;
1560    
1561          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1562              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1563          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1156  for ac_option in "$@" ; do Line 1567  for ac_option in "$@" ; do
1567              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1568          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1569              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1570            
1571          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1572              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1573    
1574            -es | --es | -embed-source | --embed-source)
1575                EMBED_SRC=t ;;
1576    
1577          -*)          -*)
1578              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582          *)          *)
1583              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1584              usage              usage
1585              ;;              ;;
1586            
1587      esac      esac
1588        
1589  done  done
1590    
1591    #TMP=./genmk_$$
1592    #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_${USER}_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599    fi
1600    rm -f $TMP
1601    #echo "  temp files: $TMP.*"
1602    
1603    printf "  getting local config information:  "
1604    if test -f $gm_local ; then
1605        echo "using $gm_local"
1606        . $gm_local
1607    else
1608        echo "none found"
1609    fi
1610    
1611  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1612      echo      echo
1613      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1614      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1615      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1616      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1617        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1618        echo "WARNING: ignore \"./.genmakerc\" and continue."
1619      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1620  fi  fi
1621    
1622  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1623  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1624      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1625      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1626          ROOTDIR=".."          ROOTDIR=".."
1627      else      else
1628          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1629              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1630                  ROOTDIR=$d                  ROOTDIR=$d
1631                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1632                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1633                  break                  break
1634              fi              fi
1635          done          done
# Line 1215  if test ! -d ${ROOTDIR} ; then Line 1647  if test ! -d ${ROOTDIR} ; then
1647  fi  fi
1648    
1649  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1650  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1651      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1652        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1653    #-  remove ./BUILD_INFO.h file if older than version_file
1654        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1655            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1656            rm -f ./BUILD_INFO.h
1657        fi
1658  fi  fi
1659    
1660  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1661      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1662  fi  fi
1663    
1664  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1665  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1666      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1667          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1668          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1669          find_possible_configs          find_possible_optfile
1670      else      else
1671          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1672      fi      fi
# Line 1243  if test "x$OPTFILE" != xNONE ; then Line 1681  if test "x$OPTFILE" != xNONE ; then
1681              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1682              exit 1              exit 1
1683          fi          fi
1684          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1685              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1686          fi          fi
1687      else      else
# Line 1252  if test "x$OPTFILE" != xNONE ; then Line 1690  if test "x$OPTFILE" != xNONE ; then
1690      fi      fi
1691  fi  fi
1692    
1693  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1694  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1695      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699      else      else
1700          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701      fi      fi
1702  fi  fi
1703  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1270  if test "x${AD_OPTFILE}" != xNONE ; then Line 1710  if test "x${AD_OPTFILE}" != xNONE ; then
1710              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1711              exit 1              exit 1
1712          fi          fi
1713          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1714              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1715          fi          fi
1716      else      else
# Line 1298  Error: no Fortran compiler: please speci Line 1738  Error: no Fortran compiler: please speci
1738  EOF  EOF
1739      exit 1      exit 1
1740  fi  fi
1741    if test "x$GET_FC_VERSION" != x ; then
1742      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1743      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1744      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1745      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1746      if test -s genmake_fc_vers1 ; then
1747        cat genmake_fc_vers1 >> $LOGFILE
1748      else
1749        cat genmake_fc_vers2 >> $LOGFILE
1750      fi
1751      echo "<-- compiler version ----" >> $LOGFILE
1752      rm -f genmake_fc_vers1 genmake_fc_vers2
1753    fi
1754    
1755  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1756      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1757  fi  fi
1758    
1759  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1760      LINK=$FC      LINK=$FC
1761  fi  fi
# Line 1315  if test "x$MAKE" = x ; then Line 1763  if test "x$MAKE" = x ; then
1763      MAKE="make"      MAKE="make"
1764  fi  fi
1765  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1766      CPP=cpp      CPP="cpp -traditional -P"
1767  fi  fi
1768  #EH3 === UGLY ===  #EH3 === UGLY ===
1769  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1342  EOF Line 1790  EOF
1790  else  else
1791      rm -f test_cpp      rm -f test_cpp
1792  fi  fi
1793    
1794  look_for_makedepend  look_for_makedepend
1795    
1796    #  Check that soft-link command is set and usable
1797  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1798      LN="ln -s"      LN="ln -s"
1799  fi  fi
# Line 1352  RETVAL=$? Line 1803  RETVAL=$?
1803  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1804      cat <<EOF 1>&2      cat <<EOF 1>&2
1805    
1806  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1807    command in the optfile.    command in the optfile.
1808    
1809  EOF  EOF
# Line 1370  check_for_broken_Ff Line 1821  check_for_broken_Ff
1821    
1822  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1823        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1824        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1825    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1826    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1827    fi
1828    if test ! "x$OMP" = x ; then
1829          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1830          FFLAGS="$FFLAGS $OMPFLAG"
1831          F90FLAGS="$F90FLAGS $OMPFLAG"
1832          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1833    fi
1834    
1835    if test ! "x$USE_R4" = x ; then
1836          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1837          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1838  fi  fi
1839    
1840  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1841        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1842        DEFINES="$DEFINES -DTIME_PER_TIMESTEP"        if test ! "x$FOOLAD" = x ; then
1843                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1844          else
1845                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1846          fi
1847          PACKAGES="$PACKAGES showflops"
1848    fi
1849    if test ! "x$PAPIS" = x ; then
1850          echo "  Turning on PAPI flop summary per timestep"
1851          echo "  Please make sure PAPIINC, PAPILIB are defined"
1852          if test ! "x$FOOLAD" = x ; then
1853                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1854          else
1855                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1856          fi
1857          INCLUDES="$INCLUDES $PAPIINC"
1858          LIBS="$LIBS $PAPILIB"
1859          PACKAGES="$PACKAGES showflops"
1860    fi
1861    if test ! "x$PCLS" = x ; then
1862          echo "  Turning on PCL counter summary per timestep"
1863          echo "  Please make sure PCLINC, PCLLIB are defined"
1864          if test ! "x$FOOLAD" = x ; then
1865                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1866          else
1867                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1868          fi
1869          INCLUDES="$INCLUDES $PCLINC"
1870          LIBS="$LIBS $PCLLIB"
1871          PACKAGES="$PACKAGES showflops"
1872    fi
1873    if test ! "x$PAPI" = x ; then
1874          if test ! "x$PAPIS" = x ; then
1875              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1876              echo "  Sticking with PAPI flop summary per timestep!"
1877          else
1878              echo "  Turning on performance analysis with PAPI"
1879              echo "  Please make sure PAPIINC, PAPILIB are defined"
1880              DEFINES="$DEFINES -DUSE_PAPI"
1881              INCLUDES="$INCLUDES $PAPIINC"
1882              LIBS="$LIBS $PAPILIB"
1883          fi
1884    fi
1885    if test ! "x$PCL" = x ; then
1886          if test ! "x$PCLS" = x ; then
1887              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1888              echo "  Sticking with PCL flop summary per timestep!"
1889          else
1890              echo "  Turning on performance analysis with PCL"
1891              echo "  Please make sure PCLINC, PCLLIB are defined"
1892              DEFINES="$DEFINES -DUSE_PCL"
1893              INCLUDES="$INCLUDES $PCLINC"
1894              LIBS="$LIBS $PCLLIB"
1895          fi
1896    fi
1897    if test ! "x$HPMT" = x ; then
1898          if test ! "x$PAPI" = x ; then
1899              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1900              echo "  Sticking with PAPI!"
1901          else
1902            if test ! "x$PCL" = x ; then
1903              echo "  PCL and the HPM Toolkit cannot co-exist!"
1904              echo "  Sticking with PCL!"
1905            else
1906              echo "  Turning on performance analysis with the HPM Toolkit"
1907              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1908              DEFINES="$DEFINES -DUSE_LIBHPM"
1909              INCLUDES="$INCLUDES $HPMTINC"
1910              LIBS="$LIBS $HPMTLIB"
1911            fi
1912          fi
1913    fi
1914    if test ! "x$GSL" = x ; then
1915          echo "  Turning on use of GSL to control floating point calculations"
1916          echo "  Please make sure GSLINC, GSLLIB are defined"
1917          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1918          INCLUDES="$INCLUDES $GSLINC"
1919          LIBS="$LIBS $GSLLIB"
1920    fi
1921    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1922    if test ! "x$USE_EXTENDED_SRC" = x ; then
1923          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1924          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1925  fi  fi
1926    
1927  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
# Line 1443  rm -f genmake_tcomp* Line 1989  rm -f genmake_tcomp*
1989  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1990  check_HAVE_CLOC  check_HAVE_CLOC
1991  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1992        DEFINES="$DEFINES -DHAVE_CLOC"
1993      echo "yes"      echo "yes"
1994  else  else
1995      echo "no"      echo "no"
1996        if test "x$EMBED_SRC" = xt ; then
1997            echo "    WARNING: you requested file embedding but it has"
1998            echo "      been disabled since C code cannot be called"
1999            EMBED_SRC=
2000        fi
2001  fi  fi
2002  rm -f genmake_t*  rm -f genmake_t*
2003    
2004  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
2005  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
2006  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
2007        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2008        echo "yes"
2009    else
2010        echo "no"
2011    fi
2012    rm -f genmake_t*
2013    
2014    printf "  Can we register a signal handler using $FC...  "
2015    check_HAVE_SIGREG
2016    if test "x$HAVE_SIGREG" = xt ; then
2017        DEFINES="$DEFINES -DHAVE_SIGREG"
2018      echo "yes"      echo "yes"
2019  else  else
2020      echo "no"      echo "no"
# Line 1461  rm -f genmake_t* Line 2024  rm -f genmake_t*
2024  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2025  check_HAVE_STAT  check_HAVE_STAT
2026  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2027        DEFINES="$DEFINES -DHAVE_STAT"
2028      echo "yes"      echo "yes"
2029  else  else
2030      echo "no"      echo "no"
# Line 1470  rm -f genmake_t* Line 2034  rm -f genmake_t*
2034  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2035  check_netcdf_libs  check_netcdf_libs
2036  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2037        DEFINES="$DEFINES -DHAVE_NETCDF"
2038      echo "yes"      echo "yes"
2039  else  else
2040      echo "no"      echo "no"
2041  fi  fi
2042    
2043    printf "  Can we create LAPACK-enabled binaries...  "
2044    check_lapack_libs
2045    if test "x$HAVE_LAPACK" != x ; then
2046        DEFINES="$DEFINES -DHAVE_LAPACK"
2047        echo "yes"
2048    else
2049        echo "no"
2050    fi
2051    
2052    printf "  Can we call FLUSH intrinsic subroutine...  "
2053    check_HAVE_FLUSH
2054    if test "x$HAVE_FLUSH" = xt ; then
2055        DEFINES="$DEFINES -DHAVE_FLUSH"
2056        echo "yes"
2057    else
2058        echo "no"
2059    fi
2060    
2061  DEFINES="$DEFINES $IGNORE_TIME"  DEFINES="$DEFINES $IGNORE_TIME"
2062    if test "x$EMBED_SRC" = xt ; then
2063        build_embed_encode
2064    fi
2065    if test "x$EMBED_SRC" = xt ; then
2066        ENABLE="$ENABLE embed_files"
2067    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2068    fi
2069    
2070  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2071  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2072  for d in $MODS ; do  for d in $MODS ; do
2073      if test ! -d $d ; then      if test ! -d $d ; then
2074          echo          echo
2075          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2076          exit 1          exit 1
2077      else      else
2078          printf " $d"          printf "$d "
2079          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2080          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2081      fi      fi
2082  done  done
2083  echo  echo
2084    
2085  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2086      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2087  fi  #fi
2088    
2089  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2090      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1533  ERROR: neither of the two default script Line 2124  ERROR: neither of the two default script
2124      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2125      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2126    
2127    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2128    working version of this script.    working version of this script.
2129    
2130  EOF  EOF
# Line 1545  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2136  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2136    
2137  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2138    
2139    #  Set Standard Code Directories:
2140    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2141        STANDARDDIRS="eesupp model"
2142    fi
2143    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2144    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2145    ckM=$?
2146    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2147    ckE=$?
2148    if test $ckM = 0 -a $ckE = 1 ; then
2149        STANDARDDIRS="$STANDARDDIRS eesupp"
2150    fi
2151    
2152  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2153  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2154  #  they appear as regular source code  #  they appear as regular source code
2155  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2156      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2157      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2158        ) > make_eesupp.errors 2>&1
2159      RETVAL=$?      RETVAL=$?
2160      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2161          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2162      else      else
2163          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2164          cat make_eesupp.errors 1>&2          cat make_eesupp.errors 1>&2
2165          exit 1          exit 1
     fi  
 fi  
   
 #same for exch2  
 if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  
     echo "  Making source files in exch2 from  templates"  
     ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         rm -f make_exch2.errors  
     else  
         echo "Error: problem encountered while building source files in exch2:"  
         cat make_exch2.errors 1>&2  
         exit 1  
2166      fi      fi
2167  fi  fi
2168    
2169    #same for pkg/exch2 and pkg/regrid
2170    for pdir in exch2 regrid ; do
2171        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2172            echo "  Making source files in pkg/${pdir} from templates"
2173            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2174            ) > make_${pdir}.errors 2>&1
2175            RETVAL=$?
2176            if test "x${RETVAL}" = x0 ; then
2177                rm -f make_${pdir}.errors
2178            else
2179                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2180                cat make_${pdir}.errors 1>&2
2181                exit 1
2182            fi
2183        fi
2184    done
2185    
2186  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2187  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2188      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2189      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2190          PDEPEND=$tmp  fi
2191      else  if  test "x${PKG_DEPEND}" = x ; then
2192          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2193          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2194  else  else
2195      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2196          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2197          exit 1          exit 1
2198      fi      fi
2199        echo "  getting package dependency info from  $PKG_DEPEND"
2200    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2201        get_pdepend_list $PKG_DEPEND
2202  fi  fi
2203  echo "  getting package dependency info from  $PDEPEND"  
2204  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2205  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2206  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2207      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2208      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2209  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2210  if test ! "x${RETVAL}" = x0 ; then  fi
2211      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2212      exit 1          echo "Warning:  No package groups information was specified."
2213            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2214    else
2215        if test ! -r ${PKG_GROUPS} ; then
2216            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2217            exit 1
2218        fi
2219        echo "  getting package groups info from      $PKG_GROUPS"
2220  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2221    
2222  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2223  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2224  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2225  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2226      for i in "." $MODS ; do      for i in "." $MODS ; do
2227          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2228                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2229                  break                  break
2230          fi          fi
2231      done      done
2232  fi  fi
2233  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2234      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2235  fi      if test "x${PKG_GROUPS}" = x ; then
2236  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2237      echo "    default packages file disabled"          exit 1
2238        fi
2239  else  else
2240      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2241          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2242            exit 1
2243      else      else
2244          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2245          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2246          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2247          RETVAL=$?          RETVAL=$?
2248          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2249              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2250              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2251              exit 1              exit 1
2252          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2253      fi      fi
2254  fi  fi
2255    for i in $pkg_list ; do
2256        PACKAGES="$PACKAGES $i"
2257    done
2258    echo     "    before group expansion packages are:$PACKAGES"
2259    if test "x${PKG_GROUPS}" != x ; then
2260        RET=1
2261        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2262        echo "    after group expansion packages are: $PACKAGES"
2263    fi
2264    
2265  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2266    echo "" > $TMP.pack
2267  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2268      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2269  done  done
2270  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2271      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2272      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2273  done  done
# Line 1666  for p in $PACKAGES ; do Line 2285  for p in $PACKAGES ; do
2285  done  done
2286  PACKAGES="$pack"  PACKAGES="$pack"
2287  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2288  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2289  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2290  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2291  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2292      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2293      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2294          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2295          exit 1          exit 1
2296      fi      fi
2297      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2298  done  done
2299  PACKAGES=  PACKAGES=
2300  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2301      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2302  done  done
2303  rm -f ./.tmp_pack  rm -f $TMP.pack
2304  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2305    
2306  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2307  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2308  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2309  RETVAL=$?  mnc_in=$?
2310  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2311      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2312          cat <<EOF          cat <<EOF
   
2313  *********************************************************************  *********************************************************************
2314  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2315    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2316    
2317    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2318    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2319         NetCDF library to link against.         NetCDF library to link against.
2320    
2321    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2322  *********************************************************************  *********************************************************************
   
2323  EOF  EOF
2324          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2325          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2326      else      else
2327          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2328          RETVAL=$?          DISABLE="$DISABLE mnc"
2329          if test "x${RETVAL}" = x0 ; then      fi
2330              rm -f make_mnc.errors  else
2331          else      # we have NetCDF, we try to build MNC template files
2332              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2333              cat make_mnc.errors 1>&2      RETVAL=$?
2334        if test "x${RETVAL}" = x0 ; then
2335            rm -f make_mnc.errors
2336        else
2337            echo "Error: problem encountered while building source files in pkg/mnc:"
2338            cat make_mnc.errors 1>&2
2339            if test "x$mnc_in" = x0 ; then
2340              exit 1              exit 1
2341            else
2342                DISABLE="$DISABLE mnc"
2343          fi          fi
2344      fi      fi
2345  fi  fi
2346    
2347  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2348  ck=  #  then delete profiles from the list of available packages.
2349  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2350        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2351        RETVAL=$?
2352        if test "x$RETVAL" = x0 ; then
2353            cat <<EOF
2354    *********************************************************************
2355    WARNING: the "profiles" package was enabled but tests failed to
2356      compile NetCDF applications.  Please check that:
2357    
2358      1) NetCDF is correctly installed for this compiler and
2359      2) the LIBS variable (within the "optfile") specifies the correct
2360           NetCDF library to link against.
2361    
2362      Due to this failure, the "profiles" package is now DISABLED.
2363    *********************************************************************
2364    EOF
2365            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2366            DISABLE="$DISABLE profiles"
2367        else
2368        #  this prevent to add profiles (due to pdepend rules) if not available
2369            DISABLE="$DISABLE profiles"
2370        fi
2371    fi
2372    
2373    #  Make sure the openad package is enabled if using OpenAD
2374    if test "x$OPENAD" != x ; then
2375        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2376        RETVAL=$?
2377        if test "x$RETVAL" != x0 ; then
2378            cat <<EOF
2379    
2380    *********************************************************************
2381    ERROR: when generating an adjoint with OpenAD, the openad package
2382      must be enabled.  Please add it to packages.conf.
2383    *********************************************************************
2384    
2385    EOF
2386            exit 1
2387        fi
2388    fi
2389    
2390    if  test "x${PKG_DEPEND}" != x ; then
2391      echo "  applying package dependency rules"
2392      ck=
2393      while test "x$ck" != xtt ; do
2394      i=0      i=0
2395      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2396      rtot=$nname      rtot=$nname
2397      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2398    
2399          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2400          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1737  while test "x$ck" != xtt ; do Line 2406  while test "x$ck" != xtt ; do
2406                  pin="t"                  pin="t"
2407              fi              fi
2408          done          done
2409            #  or in the current $STANDARDDIRS list?
2410            for p in $STANDARDDIRS ; do
2411                if test "x$p" = "x$pname" ; then pin="t" ; fi
2412            done
2413    
2414          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2415          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1759  while test "x$ck" != xtt ; do Line 2432  while test "x$ck" != xtt ; do
2432    
2433          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2434          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2435                #echo "   " $pname ": need to add :" $dname
2436              in_dis="f"              in_dis="f"
2437              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2438                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1779  while test "x$ck" != xtt ; do Line 2453  while test "x$ck" != xtt ; do
2453          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2454          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2455              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2456              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2457              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2458              exit 1              exit 1
2459          fi          fi
2460          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2461          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2462      done      done
2463      ck=$ck"t"      ck=$ck"t"
2464  done    done
2465  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2466    fi
2467  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2468      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2469      if test -d $adr ; then      if test -d $adr ; then
# Line 1805  done Line 2480  done
2480    
2481  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2482  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2483  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2484  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2485  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2486  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2487  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 1823  for n in $names ; do Line 2498  for n in $names ; do
2498          done          done
2499          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2500              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2501              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2502          fi          fi
2503      fi      fi
2504  done  done
# Line 1834  for i in $PACKAGES ; do Line 2509  for i in $PACKAGES ; do
2509  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2510    
2511  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2512      case $i in      case $i in
2513          aim_v23)          aim_v23)
2514              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2515              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2516              ;;              ;;
2517      esac      esac
# Line 1844  for i in $PACKAGES ; do Line 2519  for i in $PACKAGES ; do
2519    
2520  done  done
2521    
2522  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2523  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2524  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2525      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2526          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 1881  for i in $spaths ; do Line 2553  for i in $spaths ; do
2553      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2554          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2555          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2556          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2557          for n in $names ; do          for n in $names ; do
2558              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2559          done          done
2560      fi      fi
2561      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2562      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2563          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2564          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2565  #**** not yet enabled ****  #**** not yet enabled ****
2566  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2567  #**** not yet enabled ****  #**** not yet enabled ****
# Line 1903  fi Line 2575  fi
2575    
2576  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2577  #  compiler.  #  compiler.
2578  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2579      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2580  fi  fi
2581  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2582    touch $TMP.adSrcFiles
2583  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2584      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2585      for j in $list_files ; do      for j in $list_files ; do
2586          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2587      done      done
2588  done  done
2589  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2590      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2591      mv -f ad_files_f ad_files      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2592  fi  fi
2593    
2594  echo  echo
# Line 1927  for i in $INCLUDEDIRS ; do Line 2600  for i in $INCLUDEDIRS ; do
2600      fi      fi
2601  done  done
2602    
2603    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2604        if test ! "x$MPIINCLUDEDIR" = x ; then
2605            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2606            #   checking for additional included headers (in case of chain of included
2607            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2608            mpi_headers_do_local_copy
2609        fi
2610    fi
2611    
2612  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2613  rm -rf .links.tmp  rm -rf $TMP.links
2614  mkdir .links.tmp  mkdir $TMP.links
2615  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2616  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2617  printf 'SRCFILES = '    > srclist.inc      echo
2618  printf 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2619  printf 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2620  printf 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2621  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2622        echo "   sane such as:"
2623        echo
2624        echo "      umask 0002"
2625        echo
2626        echo "   and please verify that you have the proper permissions for"
2627        echo "   creating sub-directories and then reading files created"
2628        echo "   within them."
2629        echo
2630        exit 1
2631    fi
2632    rm -f $TMP.links/foo
2633    
2634    if test "x$OPENAD" != x ; then
2635        OAD_DONT_COMPILE="/dev/null"
2636        OAD_DONT_TRANSFORM="/dev/null"
2637        OAD_KEEP_ORIGINAL="/dev/null"
2638        OAD_CB2M_FILES="/dev/null"
2639        OADTOOLS="$TOOLSDIR/OAD_support"
2640        echo "  looking for dontCompile file:  "
2641        for i in "." $MODS $OADTOOLS ; do
2642            if test -r $i"/dontCompile" ; then
2643                OAD_DONT_COMPILE=$i"/dontCompile"
2644                echo "     found $OAD_DONT_COMPILE"
2645                break
2646            fi
2647        done
2648        echo "  looking for dontTransform file:  "
2649        for i in "." $MODS $OADTOOLS ; do
2650            if test -r $i"/dontTransform" ; then
2651                OAD_DONT_TRANSFORM=$i"/dontTransform"
2652                echo "     found $OAD_DONT_TRANSFORM"
2653                break
2654            fi
2655        done
2656        echo "  looking for keepOriginal file:  "
2657        for i in "." $MODS $OADTOOLS ; do
2658            if test -r $i"/keepOriginal" ; then
2659                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2660                echo "     found $OAD_KEEP_ORIGINAL"
2661                break
2662            fi
2663        done
2664        echo "  looking for cb2mFiles:  "
2665        for i in "." $MODS $OADTOOLS ; do
2666            if test -r $i"/cb2mFiles" ; then
2667                OAD_CB2M_FILES=$i"/cb2mFiles"
2668                echo "     found $OAD_CB2M_FILES"
2669                break
2670            fi
2671        done
2672        echo "   OpenAD exceptions:  "
2673    fi
2674    
2675    echo "# This section creates symbolic links" > $TMP.srclinks
2676    echo "" >> $TMP.srclinks
2677    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2678    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2679    printf 'C_SRC_FILES = '   > $TMP.csrclist
2680    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2681    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2682    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2683  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2684  for d in $alldirs ; do  for d in $alldirs ; do
2685      deplist=      deplist=
2686      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2687      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2688        if test "x$OPENAD" != x ; then
2689            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2690        fi
2691      for sf in $sfiles ; do      for sf in $sfiles ; do
2692          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2693              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2694                  ignore_f=f                  ignore_f=f
2695                  case $d/$sf in                  case $d/$sf in
2696                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2697                            ignore_f=t
2698                          ;;                          ;;
2699                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2700                            ignore_f=t
2701                          ;;                          ;;
2702                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2703                            ignore_f=t
2704                          ;;                          ;;
2705                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2706                            ignore_f=t
2707                          ;;                          ;;
2708                    *)                    ./EMBEDDED_FILES.h)
2709                            ignore_f=t
2710                            ;;
2711                      *)
2712                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2713                          #  ignore all soft-links                          #  ignore all soft-links
2714                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2715                              ignore_f=t                              ignore_f=t
2716                          else                          else
2717                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2718                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2719                          fi                          fi
2720                          ;;                          ;;
2721                  esac                  esac
2722                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2723                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2724                      case $extn in                      case $extn in
2725                          F)                        F)
2726                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> $TMP.F77srclist
2727                              printf " $sf" >> srclist.inc                          printf " $sf" >> $TMP.F77srclist
2728                              ;;                          if test "x$OPENAD" = x ; then
2729                          F90)                              basename=${sf%%.F}
2730                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2731                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2732                              ;;                                  echo    " \\"  >> $TMP.nonADF77srclist
2733                          c)                                  printf " $sf" >> $TMP.nonADF77srclist
2734                              echo    " \\"  >> csrclist.inc                              fi
2735                              printf " $sf" >> csrclist.inc                          else #- OpenAD case:
2736                              ;;                              basename=${sf%%.F}
2737                          h)                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2738                              echo    " \\"  >> hlist.inc                              if test -z "$isAD" ; then
2739                              printf " $sf" >> hlist.inc                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2740                              ;;                                  if test -z "$toBeIgnored" ; then
2741                          flow)                                      echo    " \\"  >> $TMP.nonADF77srclist
2742                              echo    " \\"  >> ad_flow_files.inc                                      printf " $sf" >> $TMP.nonADF77srclist
2743                              printf " $sf" >> ad_flow_files.inc                                  else
2744                              ;;                                      echo "    not to be compiled   :  $sf"
2745                      esac                                  fi
2746                  fi                              else # file is initially listed as an AD file we want to exclude it
2747                                     # or we want to retain the untransformed version
2748                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2749                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2750                                    if test -n "$notToBeTransformed"; then
2751                                        echo "    not to be transformed:  $sf"
2752                                    fi
2753                                    if test -n "$untransformedVersionToBeKept" ; then
2754                                        echo "    original to be kept  :  $sf"
2755                                    fi
2756                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2757                                        echo    " \\"  >> $TMP.nonADF77srclist
2758                                        printf " $sf" >> $TMP.nonADF77srclist
2759                                    fi
2760                                fi
2761                            fi
2762                            ;;
2763                        F90)
2764                            echo    " \\"  >> $TMP.F90srclist
2765                            printf " $sf" >> $TMP.F90srclist
2766                            ;;
2767                        c)
2768                            echo    " \\"  >> $TMP.csrclist
2769                            printf " $sf" >> $TMP.csrclist
2770                            ;;
2771                        h)
2772                            echo    " \\"  >> $TMP.hsrclist
2773                            printf " $sf" >> $TMP.hsrclist
2774                            ;;
2775                        flow)
2776                            echo    " \\"  >> $TMP.ad_flow_files
2777                            printf " $sf" >> $TMP.ad_flow_files
2778                            ;;
2779                       esac
2780                    fi
2781              fi              fi
2782          fi          fi
2783      done      done
2784      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2785          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2786          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2787          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2788          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2789      fi  # We need to make sure that the link isn't already there.
2790    # This may happen when make thinks that a header file has to be "remade"
2791    # because a module it depends on has changed.  In this case we do nothing.
2792            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2793          fi
2794        fi
2795    done
2796    rm -rf $TMP.links
2797    echo "" >> $TMP.F77srclist
2798    echo "" >> $TMP.nonADF77srclist
2799    echo "" >> $TMP.csrclist
2800    echo "" >> $TMP.F90srclist
2801    echo "" >> $TMP.hsrclist
2802    echo "" >> $TMP.ad_flow_files
2803    
2804    CMDLINE=$0
2805    for xx in "$@" ; do nw=`echo $xx | wc -w`
2806        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2807                            else CMDLINE="$CMDLINE '$xx'" ; fi
2808  done  done
 rm -rf .links.tmp  
 echo "" >> srclist.inc  
 echo "" >> csrclist.inc  
 echo "" >> f90srclist.inc  
 echo "" >> hlist.inc  
 echo "" >> ad_flow_files.inc  
2809    
2810  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2811      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2812  fi  fi
2813  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2814  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2017  echo "#    $MACHINE" >> $MAKEFILE Line 2816  echo "#    $MACHINE" >> $MAKEFILE
2816  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2817  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2818  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2819  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2820  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2821  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2822    
# Line 2028  EXE_SVD=$EXECUTABLE"_svd" Line 2827  EXE_SVD=$EXECUTABLE"_svd"
2827  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2828  #  #
2829  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2830  #  #
2831  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2832  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2833  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2039  cat >>$MAKEFILE <<EOF Line 2838  cat >>$MAKEFILE <<EOF
2838  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2839  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2840  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2841  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2842  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2843  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2048  cat >>$MAKEFILE <<EOF Line 2845  cat >>$MAKEFILE <<EOF
2845  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2846    
2847  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2848  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2849  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2850  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2851  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2852  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2853  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2854    OADTOOLS    = ${OADTOOLS}
2855    
2856  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2857  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2066  DISABLED_PACKAGES = ${DISABLED_PACKAGES} Line 2864  DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2864    
2865  # These files are created by Makefile  # These files are created by Makefile
2866  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h  SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
   
2867  EOF  EOF
2868    
2869  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2870        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2871    else
2872        echo "EMBEDDED_FILES = " >>$MAKEFILE
2873    fi
2874    
2875    # extract default cpp search path so we can pass it to makedepend
2876    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2877    
2878  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2879  # Unix ln (link)  # Unix ln (link)
2880  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2881  # Dependency generator  # Dependency generator
2882  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2883  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2093  LINK = ${LINK} ${LDADD} Line 2895  LINK = ${LINK} ${LDADD}
2895  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2896  # Includes for CPP  # Includes for CPP
2897  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2898    # default CPP includes for makedepend
2899    CPPINCLUDES = ${CPPINCLUDES}
2900  # Flags for KPP  # Flags for KPP
2901  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2902  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2903  # Optim./debug for FC  # Optim./debug for FC
2904  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2905  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2906  # Optim./debug for FC  # Optim./debug for FC
2907  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2908  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2909    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2910  # Flags for CC  # Flags for CC
2911  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2912  # Files that should not be optimized  # Files that should not be optimized
# Line 2109  NOOPTFILES = ${NOOPTFILES} Line 2914  NOOPTFILES = ${NOOPTFILES}
2914  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2915  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2916  LIBS = ${LIBS}  LIBS = ${LIBS}
2917  # Name of the Mekfile  # Name of the makefile
2918  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2919    # Name of the make program
2920    MAKE = ${MAKE}
2921    
2922  EOF  EOF
2923    
2924  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2925  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2926  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2927  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2928  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2929    cat $TMP.ad_flow_files   >> $MAKEFILE
2930    
2931    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2932    
2933  echo >> $MAKEFILE  echo >> $MAKEFILE
2934  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2935  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2936  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2937    # hence the $FS and $FS90 here.
2938    # for fixed format f90 files we use ff90 or FF90 resp
2939    # but these are not expected to be the original source files
2940    
2941    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2942    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2943    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2944    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2945  echo >> $MAKEFILE  echo >> $MAKEFILE
2946  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2947  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2948    
2949  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2950    
2951  all: \$(EXECUTABLE)  all: fwd_exe_target
2952  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES)  fwd_exe_target:
2953            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2954            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2955            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2956            @-rm -f ad_config.template
2957            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2958    
2959    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2960          @echo Creating \$@ ...          @echo Creating \$@ ...
2961          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2962    
2963  depend:  depend:
2964          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2965          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2966          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2967          -rm -f makedepend.out          -rm -f makedepend.out
2968    
# Line 2145  lib: libmitgcmuv.a Line 2970  lib: libmitgcmuv.a
2970    
2971  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2972          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2973            ar d   libmitgcmuv.a main.o
2974    
2975  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2976    
2977  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2978    
2979  output.txt: \$(EXECUTABLE)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
2980    
2981    # remove most of the files that "make" generates
2982  clean:  clean:
2983          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2984            -rm -rf *.o
2985            -rm -rf *.$FS *.flowdir
2986            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2987    
2988    # remove most of the files that "make" and "make depend" generate
2989  Clean:  Clean:
2990          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2991          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2992          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2993          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2994    
2995    # remove also the executable, files that "genmake2" generates (except Makefile)
2996    #         and output from a run (plus log files from testreport)
2997  CLEAN:  CLEAN:
2998          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2999            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3000            -rm -f $LOGFILE genmake_state genmake_*optfile
3001            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3002            -rm -rf mpi_headers mnc_test_*
3003          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3004          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3005          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3006          -rm -f \$(EXECUTABLE) output.txt STD*          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3007            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3008            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3009            -rm -f oad_cp.[0-9][0-9][0-9].?????
3010    
 #eh3 Makefile: makefile  
3011  makefile:  makefile:
3012          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3013  cleanlinks:  cleanlinks:
3014          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3015    
3016  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
3017  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3018          @echo Creating \$@ ...          @echo Creating \$@ ...
3019          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3020  AD_CONFIG.h:  AD_CONFIG.h:
3021          @echo Creating \$@ ...          @echo Creating \$@ ...
3022          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3023  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3024          @echo Creating \$@ ...          @echo Creating \$@ ...
3025          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2194  test ! "x$THISUSER" = x && echo "      -echo Line 3033  test ! "x$THISUSER" = x && echo "      -echo
3033  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE  test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3034  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE  test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3035    
3036    if test "x$EMBED_SRC" = xt ; then
3037        cat >>$MAKEFILE <<EOF
3038    
3039    decode_files.o : EMBEDDED_FILES.h
3040    
3041    ##  \$(F77_PP_SRC_FILES)
3042    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3043            @echo Creating \$@ ...
3044            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3045            -rm -f all_fF.tar.gz
3046            -gzip all_fF.tar
3047    
3048    EMBEDDED_FILES.h : all_fF.tar.gz
3049            @echo Creating \$@ ...
3050            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3051    
3052    EOF
3053    fi
3054    
3055  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3056    
3057  # The normal chain of rules is (  .F - .$FS - .o  )  # The normal chain of rules is (  .F - .$FS - .o  )
# Line 2201  cat >>$MAKEFILE <<EOF Line 3059  cat >>$MAKEFILE <<EOF
3059  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3060  ## %.o : %.F  ## %.o : %.F
3061    
3062    # C preprocessing and replacing the _d in constants:
3063    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3064    
3065  .F.$FS:  .F.$FS:
3066          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3067  .$FS.o:  .$FS.o:
3068          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3069    .F.o:
3070            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3071  .F90.$FS90:  .F90.$FS90:
3072          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3073    .FF90.f$FS90:
3074            \$(CPPCMD)  > \$@
3075  .$FS90.o:  .$FS90.o:
3076          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3077    .f$FS90.o:
3078            cp \$< \$(basename  \$<).f90
3079            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3080  .c.o:  .c.o:
3081          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3082    .flow.flowdir:
3083            \$(CPPCMD) > \$@
3084    
3085  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3086  .F.p:  .F.p:
3087          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3088  .p.$FS:  .p.$FS:
3089          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3090    
3091    EOF
3092    
3093  #=========================================  #=========================================
3094  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3095    #===  for TAMC/TAF  ======================
3096    
3097    if test "x$OPENAD" = x ; then
3098    
3099    cat >>$MAKEFILE <<EOF
3100    
3101  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3102  TAF            = ${TAF}  TAF            = ${TAF}
3103    
3104  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3105  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3106    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3107    
3108  EOF  EOF
3109    
# Line 2234  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3112  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3112  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3113  for i in $ad_vars ; do  for i in $ad_vars ; do
3114      name=$i      name=$i
3115      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3116      eval $t1      eval $t1
3117      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3118      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3119  done  done
3120    
3121  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3122  echo >> $MAKEFILE  echo >> $MAKEFILE
3123  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3124  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3125  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3126      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3127      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3128  done  done
3129  echo >> $MAKEFILE  echo >> $MAKEFILE
3130  rm -f ad_files  rm -f $TMP.adSrcFiles
3131    
3132    if test $CAT_SRC_FOR_TAF = 0 ; then
3133    cat >>$MAKEFILE <<EOF
3134    
3135    # ... Utilities ...
3136    remove_comments:
3137            sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3138            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3139    adj_sed:
3140            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3141            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3142    ftl_sed:
3143            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3144            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3145    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3146    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3147    EOF
3148    fi
3149    
3150  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3151    
3152  # ... AD ...  # ... AD ...
3153  adall: ad_taf  adall: ad_exe_target
3154  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3155  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3156    
3157  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_exe_target:
3158          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3159            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3160            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3161            @-rm -f ad_config.template
3162            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3163    
3164    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3165            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3166          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3167          -rm -f ad_config.template          @-rm -f ad_config.template
3168          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3169          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3170          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3171    
3172  ad_taf_output.$FS: ad_input_code.$FS  adtafonly:
3173          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3174            ls -l ad_input_code_ad.$FS
3175          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3176    
3177  adtafonly:  EOF
3178    
3179    if test $CAT_SRC_FOR_TAF = 1 ; then
3180    cat >>$MAKEFILE <<EOF
3181    # ... send 1 file to TAF ...
3182    ad_taf_output.$FS: ad_input_code.$FS
3183            @-rm -f ad_input_code_ad.$FS ; echo ''
3184          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3185            ls -l ad_input_code_ad.$FS
3186          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3187    
3188  ad_taf: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3189          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3190    
3191  ad_tamc_output.$FS: ad_input_code.$FS  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
         \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS  
         cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS  
3192    
3193  ad_tamc: ad_tamc_output.o \$(OBJFILES)  EOF
3194          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)  
3195    else
3196    cat >>$MAKEFILE <<EOF
3197    # ... send multiple files to TAF ...
3198    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3199            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3200            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3201            @-rm -f ad_config.template
3202            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3203            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3204            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3205            \$(MAKE) -f \$(MAKEFILE) remove_comments
3206            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3207            \$(MAKE) -f \$(MAKEFILE) adj_sed
3208            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3209    
3210    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3211            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3212            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3213    
3214    adobj: ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3215            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3216    
3217    EOF
3218    fi
3219    
3220    cat >>$MAKEFILE <<EOF
3221  adonlyfwd:  adonlyfwd:
3222          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3223    
3224  adtrick:  adtrick:
3225          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3226    
3227    ad_tamc_output.$FS: ad_input_code.$FS
3228            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3229            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3230    
3231    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3232            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3233    
3234  # ... FTL ...  # ... FTL ...
3235  ftlall: ftl_taf  ftlall: ftl_exe_target
3236  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3237  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3238    
3239  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3240          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3241          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3242          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3243          @make \$(F77FILES)          @-rm -f ad_config.template
3244          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
         cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3245    
3246  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_input_code.$FS: \$(AD_FILES)
3247          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3248          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3249            @-rm -f ad_config.template
3250            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3251            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3252            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3253    
3254  ftltafonly:  ftltafonly:
3255          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3256          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          ls -l ftl_input_code_tl.$FS
3257            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3258    
3259    EOF
3260    
3261    if test $CAT_SRC_FOR_TAF = 1 ; then
3262    cat >>$MAKEFILE <<EOF
3263    # ... send 1 file to TAF ...
3264    ftl_taf_output.$FS: ftl_input_code.$FS
3265            @-rm -f ftl_input_code_tl.$FS ; echo ''
3266            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3267            ls -l ftl_input_code_tl.$FS
3268            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3269    
3270    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3271            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3272    
3273    EOF
3274    
3275    else
3276    cat >>$MAKEFILE <<EOF
3277    # ... send multiple files to TAF ...
3278    ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3279            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3280            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3281            @-rm -f ad_config.template
3282            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3283            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3284            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3285            \$(MAKE) -f \$(MAKEFILE) remove_comments
3286            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3287            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3288            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3289    
3290    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3291            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3292            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3293    
3294  ftl_taf: ftl_taf_output.o \$(OBJFILES)  EOF
3295          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)  fi
3296    
3297    cat >>$MAKEFILE <<EOF
3298  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3299          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3300          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3301    
3302  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3303          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3304    
3305  # ... SVD ...  # ... SVD ...
3306  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2342  svd_touch: Line 3322  svd_touch:
3322          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3323          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3324          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3325          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3326          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3327          -rm -f ftl_config.template          @-rm -f ad_config.template
3328    
3329  #=========================================  EOF
3330    
3331    fi
3332    
3333    #===  for OpenAD  ========================
3334    
3335    if test "x$OPENAD" != x ; then
3336    
3337    # ============ begin OpenAD specific section ==============
3338    
3339    cat >>$MAKEFILE <<EOF
3340    # ... OpenAD ...
3341    
3342    # all the source files linked from the various locations:
3343    ALL_LINKED_FILES= \
3344    \$(F77_SRC_FILES) \
3345    \$(C_SRC_FILES) \
3346    \$(H_SRC_FILES) \
3347    \$(F90_SRC_FILES) \
3348    \$(SPECIAL_FILES)
3349    
3350    ifndef OPENADROOT
3351      \$(error "Error:  environment variable OPENADROOT not defined!")
3352    endif
3353    
3354    ifndef XAIFSCHEMAROOT
3355      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3356    endif
3357    
3358    ifndef XAIFBOOSTERROOT
3359      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3360    endif
3361    
3362    EOF
3363    
3364    echo "  Add the source list for common block to module conversion "
3365    echo >> $MAKEFILE
3366    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3367    for i in `cat ${OAD_CB2M_FILES}` ; do
3368      echo    " \\" >> $MAKEFILE
3369      printf " $i" >> $MAKEFILE
3370    done
3371    echo >> $MAKEFILE
3372    
3373    echo "  Add the source list for AD code generation"
3374    echo >> $MAKEFILE
3375    printf "AD_FILES = " >> $MAKEFILE
3376    for i in `cat ${OAD_CB2M_FILES}` ; do
3377      echo    " \\" >> $MAKEFILE
3378      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3379    done
3380    AD_FILES=`cat $TMP.adSrcFiles`
3381    for i in $AD_FILES ; do
3382      basename=${i%%.f}
3383      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3384      if test -z "$toBeIgnored" ; then
3385        echo    " \\" >> $MAKEFILE
3386        printf " $i" >> $MAKEFILE
3387      fi
3388    done
3389    echo >> $MAKEFILE
3390    rm -f $TMP.adSrcFiles
3391    
3392    cat >>$MAKEFILE <<EOF
3393    
3394    adAll: ad_exe_target
3395    .PHONY: adAll
3396    
3397    ad_exe_target:
3398            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3399            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3400            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3401            @-rm -f ad_config.template
3402            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3403    
3404    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3405    
3406    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3407    
3408    .PHONY: adDepend
3409    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3410            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3411            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3412            -rm -f makedepend.out
3413    
3414    OPENAD_SUPPORT_F90_SRC_FILES = \
3415    w2f__types.F90 \
3416    OAD_active.F90 \
3417    OAD_cp.F90 \
3418    OAD_rev.F90 \
3419    OAD_tape.F90 \
3420    revolve.F90
3421    
3422    OPENAD_SUPPORT_C_SRC_FILES = \
3423    iaddr.c \
3424    timeRatio.c
3425    
3426    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3427            cat \$^ > \$@
3428    
3429    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3430            cat \$^ > \$@
3431    
3432    f95_test.out: f95_test_mods.f90 f95_test.f90
3433            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3434            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3435    
3436    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3437    
3438    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3439    
3440    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3441    
3442    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3443            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3444    
3445    # create sources files modules from header files containing common blocks
3446    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3447            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3448    
3449    # create new header files with USE statements for the new modules made above
3450    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3451            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3452    
3453    # change the include directives of everybody to refer to  the new header files with the USE statements
3454    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3455            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3456    
3457    # makefile debug rule
3458    small_f: \$(CB2M_F90_PP_SRC_FILES)
3459    .PHONY: small_f
3460    
3461    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3462            cat \$^ > \$@
3463    
3464    # canonicalizer
3465    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3466            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3467    
3468    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3469    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3470            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3471    
3472    # F -> WHIRL
3473    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3474            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3475    
3476    # WHIRL -> XAIF
3477    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3478            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3479    
3480    # XAIF -> XAIF'
3481    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3482            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3483    
3484    # XAIF' -> WHIRL'
3485    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3486            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3487    
3488    # WHIRL' -> F'
3489    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3490            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3491    
3492    # insert template directives
3493    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3494            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3495    
3496    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3497    # postprocess F'
3498    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3499            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3500            # the target is a placeholder to trigger a single execution of the rule
3501            touch \$@
3502    # put this so make knows about the postprocessing output
3503    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3504    
3505    # link the XAIF schema files
3506    %.xsd:
3507            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3508    
3509    # link the support files:
3510    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3511            \$(LN) \${OADTOOLS}/\$@ .
3512    
3513    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3514    
3515    # ============ end OpenAD specific section ==============
3516    
3517  EOF  EOF
3518    
3519    fi
3520    
3521    #=========================================
3522    
3523  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3524      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3525  fi  fi
# Line 2376  for i in $NOOPTFILES ; do Line 3546  for i in $NOOPTFILES ; do
3546  done  done
3547    
3548  echo "  Add rules for links"  echo "  Add rules for links"
3549  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3550  rm -f srclinks.tmp  rm -f $TMP.srclinks
3551    
3552  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3553  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 2385  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3555  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3555  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3556    
3557  # Create special header files  # Create special header files
3558  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3559  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3560      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3561  else  else
# Line 2399  else Line 3569  else
3569      fi      fi
3570  fi  fi
3571  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3572      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3573  fi  fi
3574    
   
3575  #  Write the "state" for future records  #  Write the "state" for future records
3576  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3577      printf "" > genmake_state      printf "" > genmake_state
3578      for i in $gm_state ; do      for i in $gm_state ; do
3579          t1="t2=\$$i"          t1="t2=\$$i"
3580          eval $t1          eval $t1
3581          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3582      done      done
3583  fi  fi

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