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revision 1.17 by edhill, Tue Oct 21 20:10:12 2003 UTC revision 1.269 by jmc, Thu Feb 19 20:48:43 2015 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -nocat4ad | -dog4ad | -ncad | -dad
26              do not concatenate (cat) source code sent to TAF
27              resulting in compilation of multiple files
28    
29        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
30          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
31              Use "NAME" as the adoptfile.  By default, the file at
32              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
33              "tools/adjoint_options/adjoint_default" will be used.
34    
35        -nooptfile | --nooptfile
36          -optfile NAME | --optfile NAME | -of NAME | --of NAME
37          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
38              Use "NAME" as the optfile.  By default, an attempt will be
39              made to find an appropriate "standard" optfile in the
40              tools/build_options/ directory.
41    
42        -pdepend NAME | --pdepend NAME
43          -pdepend=NAME | --pdepend=NAME
44              Get package dependency information from "NAME".
45    
46        -pgroups NAME | --pgroups NAME
47          -pgroups=NAME | --pgroups=NAME
48              Get the package groups information from "NAME".
49    
50        -bash NAME
51              Explicitly specify the Bourne or BASH shell to use
52    
53        -make NAME | -m NAME
54          --make=NAME | -m=NAME
55              Use "NAME" for the MAKE program. The default is "make" but
56              many platforms, "gmake" is the preferred choice.
57    
58        -makefile NAME | -mf NAME
59          --makefile=NAME | -mf=NAME
60              Call the makefile "NAME".  The default is "Makefile".
61    
62        -makedepend NAME | -md NAME
63          --makedepend=NAME | -md=NAME
64              Use "NAME" for the MAKEDEPEND program.
65    
66        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
67          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
68              Specify the location of the MITgcm ROOTDIR as "NAME".
69              By default, genamke will try to find the location by
70              looking in parent directories (up to the 5th parent).
71    
72        -mods NAME | --mods NAME | -mo NAME | --mo NAME
73          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
74              Here, "NAME" specifies a list of directories that are
75              used for additional source code.  Files found in the
76              "mods list" are given preference over files of the same
77              name found elsewhere.
78    
79        -disable NAME | --disable NAME
80          -disable=NAME | --disable=NAME
81              Here "NAME" specifies a list of packages that we don't
82              want to use.  If this violates package dependencies,
83              genamke will exit with an error message.
84    
85        -enable NAME | --enable NAME
86          -enable=NAME | --enable=NAME
87              Here "NAME" specifies a list of packages that we wish
88              to specifically enable.  If this violates package
89              dependencies, genamke will exit with an error message.
90    
91        -standarddirs NAME | --standarddirs NAME
92          -standarddirs=NAME | --standarddirs=NAME
93              Here, "NAME" specifies a list of directories to be
94              used as the "standard" code.
95    
96        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
97          -fc=NAME | --fc=NAME
98              Use "NAME" as the fortran compiler.  By default, genmake
99              will search for a working compiler by trying a list of
100              "usual suspects" such as g77, f77, etc.
101    
102        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
103              Use "NAME" as the C compiler.  By default, genmake
104              will search for a working compiler by trying a list of
105              "usual suspects" such as gcc, c89, cc, etc.
106    
107        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
108              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
109              *only* works if CPP_EEOPTIONS.h allows this.
110    
111        -ignoretime | -ignore_time | --ignoretime | --ignore_time
112              Ignore all the "wall clock" routines entirely.  This will
113              not in any way hurt the model results -- it simply means
114              that the code that checks how long the model spends in
115              various routines will give junk values.
116    
117        -ts | --ts
118              Produce timing information per timestep
119        -papis | --papis
120              Produce summary MFlop/s (and IPC) with PAPI per timestep
121        -pcls | --pcls
122              Produce summary MFlop/s etc. with PCL per timestep
123        -foolad | --foolad
124              Fool the AD code generator
125        -papi | --papi
126              Performance analysis with PAPI
127        -pcl | --pcl
128              Performance analysis with PCL
129        -hpmt | --hpmt
130              Performance analysis with the HPM Toolkit
131    
132        -ieee | --ieee
133              use IEEE numerics.  Note that this option *only* works
134              if it is supported by the OPTFILE that is being used.
135        -devel | --devel
136              Add additional warning and debugging flags for development
137              (if supported by the OPTFILE); also switch to IEEE numerics.
138        -gsl | --gsl
139              Use GSL to control floating point rounding and precision
140    
141        -mpi | --mpi
142              Include MPI header files and link to MPI libraries
143        -mpi=PATH | --mpi=PATH
144              Include MPI header files and link to MPI libraries using MPI_ROOT
145              set to PATH. i.e. Include files from \$PATH/include, link to libraries
146              from \$PATH/lib and use binaries from \$PATH/bin.
147    
148        -omp | --omp
149              Activate OpenMP code + use Compiler option OMPFLAG
150        -omp=OMPFLAG | --omp=OMPFLAG
151              Activate OpenMP code + use Compiler option OMPFLAG
152    
153        -es | --es | -embed-source | --embed-source
154              Embed a tarball containing the full source code
155              (including the Makefile, etc.) used to build the
156              executable [off by default]
157    
158        -ds | --ds
159              Report genmake internal variables status (DUMPSTATE)
160              to file "genmake_state" (for debug purpose)
161    
162      While it is most often a single word, the "NAME" variables specified
163      above can in many cases be a space-delimited string such as:
164    
165        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
166        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
167        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
168    
169      which, depending upon your shell, may need to be single-quoted.
170    
171      For more detailed genmake documentation, please see:
172    
173        http://mitgcm.org/public/devel_HOWTO/
174    
175    EOF
176    
177        exit 1
178    }
179    
180  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
181  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
182  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
183      cpp_options=$1      cpp_options=$1
184      pkg=$2      pkg=$2
185      grep -i "#define.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
186      RETVAL=$?      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
187      if test "x${RETVAL}" = x0 ; then      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
188          echo "Error: In $cpp_options there is an illegal line: #define ALLOW_$pkg"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
189          exit 99  }
190      fi  
191      grep -i "#undef.*ALLOW_$pkg" $cpp_options > /dev/null 2>&1  # Search for particular CPP #cmds associated with MPI
192      RETVAL=$?  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
193      if test "x${RETVAL}" = x0 ; then  test_for_mpi_in_cpp_eeoptions() {
194          echo "Error: In $cpp_options there is an illegal line: #undef ALLOW_$pkg"      cpp_options=$1
195          exit 99      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
196      fi      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
197      grep -i "#define.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1  }
198    
199    # Search for particular string in a file. Return 1 if detected, 0 if not
200    # usage: test_for_string_in_file file string
201    test_for_string_in_file() {
202        file=$1
203        strng=$2
204        grep "$strng" $file > /dev/null 2>&1
205      RETVAL=$?      RETVAL=$?
206      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
207          echo "Error: In $cpp_options there is an illegal line: #define DISABLE_$pkg"          printf "Error: In $file there is an illegal line: "
208            grep -i "$strng" $file
209          exit 99          exit 99
210      fi      fi
211      grep -i "#undef.*DISABLE_$pkg" $cpp_options > /dev/null 2>&1      return 0
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         echo "Error: In $cpp_options there is an illegal line: #undef DISABLE_$pkg"  
         exit 99  
    fi  
212  }  }
213    
214  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to  # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
215  # the package list.  # the package list.
216  expand_pkg_groups() {  expand_pkg_groups() {
217      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
218      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
219          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
220          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
221          matched=0          matched=0
222          for i in $PACKAGES ; do          for i in $PACKAGES ; do
223              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
224              RETVAL=$?              RETVAL=$?
225              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
226                  matched=1                  matched=1
227                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
228                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
229                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
230              else              else
231                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
232              fi              fi
233          done          done
234          PACKAGES=$new_packages          PACKAGES=$new_packages
235          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
236            return $matched
237      else      else
238          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
239      fi      fi
240  }  }
241    
242  # Guess possible config options for this host  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
243  find_possible_configs()  {  #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
244    check_for_broken_Ff()  {
245        #  Do we have defaults for $FS and/or $FS90 ?
246        tfs=f
247        tfs9=f90
248        if test "x$FS" != x ; then
249            tfs="$FS"
250        fi
251        if test "x$FS90" != x ; then
252            tfs9="$FS90"
253        fi
254    
255      tmp1=`uname`"_"`uname -m`      #  First check the ability to create a *.F/.f pair.
256      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat <<EOF >> genmake_hello.F
257      PLATFORM=`echo $tmp2 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`        program hello
258      OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`        write(*,*) 'hi'
259      echo "  The platform appears to be:  $PLATFORM"        stop
260  #     if test "x$OFLIST" = x ; then        end
261  #       echo "  No pre-defined options files were found matching this platform"  EOF
262  #       echo "  but examples for other platforms can be found in:"      cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
 #       echo "    $ROOTDIR/tools/build_options"  
 #     else  
 #       echo "  Options files (located in $ROOTDIR/tools/build_options) that"  
 #       echo "  may work with this machine are:"  
 #       for i in $OFLIST ; do  
 #           echo "    $i"  
 #       done  
 #     fi  
       
     echo "test" > test  
     ln -s ./test link  
263      RETVAL=$?      RETVAL=$?
264      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
265          LN="ln -s"          if test "x$FS" = x ; then
266                FS='for'
267                FS90='fr9'
268                check_for_broken_Ff
269            else
270                cat <<EOF 2>&1
271    ERROR: Your file system cannot distinguish between *.F and *.f files
272      (fails the "cp" test) and this program cannot find a suitable
273      replacement extension.  Please try a different build environment or
274      contact the <MITgcm-support@mitgcm.org> list for help.
275    
276    EOF
277                exit -1
278            fi
279            return
280        fi
281        rm -f genmake_hello.*
282    
283        #  Check the ability of ${MAKE} and ${LN} to use the current set
284        #  of extensions.
285        cat <<EOF >> genmake_hello.F
286          program hello
287          write(*,*) 'hi'
288          stop
289          end
290    EOF
291        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
292        cat <<EOF >> $MAKEFILE
293    .SUFFIXES:
294    .SUFFIXES: .$tfs .F
295    .F.$tfs:
296            $LN \$< \$@
297    EOF
298        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
299        RETVAL=$?
300        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
301            if test "x$FS" = x ; then
302                FS='for'
303                FS90='fr9'
304                check_for_broken_Ff
305            else
306                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
307                echo "       see simple makefile: '$MAKEFILE' (left here)"
308                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
309                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
310                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
311                echo ""
312                exit -1
313                return
314            fi
315        fi
316        rm -f genmake_hello.* $MAKEFILE
317        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
318    
319        #  If we make it here, use the extensions
320        FS=$tfs
321        FS90=$tfs9
322        return
323    }
324    
325    look_for_makedepend()  {
326    
327        #  The "original" makedepend is part of the Imake system that is
328        #  most often distributed with XFree86 or with an XFree86 source
329        #  package.  As a result, many machines (eg. generic Linux) do not
330        #  have a system-default "makedepend" available.  For those
331        #  systems, we have two fall-back options:
332        #
333        #    1) a makedepend implementation shipped with the cyrus-imapd
334        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
335        #    2) a local tools/xmakedepend shell script
336        #
337        #  So the choices are, in order:
338        #    1) use the user-specified program
339        #    2) use the local xmakedepend script (get all dependencies, but slower)
340        #    3) use a system-wide default
341        #    4) locally build and use the cyrus makedepend
342        #             (faster, but can miss some dependencies)
343        #
344        echo >> $LOGFILE
345        echo "running: look_for_makedepend()" >> $LOGFILE
346        if test "x${MAKEDEPEND}" != x ; then
347            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
348            RETVAL=$?
349            if test x"$RETVAL" = x0 ; then
350                build_cyrus_makedepend
351                RETVAL=$?
352                if test "x$RETVAL" != x0 ; then
353                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
354                    MAKEDEPEND=
355                fi
356            else
357                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
358                RETVAL=$?
359                if test "x$RETVAL" = x0 ; then
360                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
361                fi
362                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
363            fi
364        fi
365        if test "x${MAKEDEPEND}" = x ; then
366            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
367            #  echo 'MAKEFILE="'$MAKEFILE'"'
368            cat <<EOF >> $MAKEFILE
369    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
370    #
371    #   Some "makedepend" implementations will die if they cannot
372    #   find a Makefile -- so this file is here to gives them an
373    #   empty one to find and parse.
374    EOF
375            cat <<EOF >> genmake_tc.f
376          program test
377          write(*,*) 'test'
378          stop
379          end
380    EOF
381            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
382            RV1=$?
383            which makedepend > /dev/null 2>&1
384            RV2=$?
385            if test "x${RV2}" = x0 ; then
386                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
387                RV3=$? ; loc_msg='not working.'
388            else RV3=$RV2 ; loc_msg='not found.'
389            fi
390            test -f $MAKEFILE  &&  rm -f $MAKEFILE
391            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
392            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
393            if test "x${RV1}" = x0 ; then
394                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396            elif test "x${RV3}" = x0 ; then
397                echo "    local tools/xmakedepend not working. Use system-default makedepend"
398                MAKEDEPEND=makedepend
399                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
400            else
401                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
402                echo -n "    Try to build cyrus-makedepend ..."
403                #  Try to build the cyrus implementation
404                build_cyrus_makedepend
405                RETVAL=$?
406                if test "x$RETVAL" = x0 ; then
407                    echo "  Works"
408                else
409                    echo "  Fails" ; echo "" >> $LOGFILE
410                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
411                    echo ""
412                    exit -1
413                    return
414                fi
415            fi
416        fi
417    }
418    
419    build_cyrus_makedepend()  {
420        echo >> $LOGFILE
421        echo "running: build_cyrus_makedepend()" >> $LOGFILE
422        rm -f ./genmake_cy_md
423        (
424            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
425                &&  ./configure > /dev/null 2>&1  \
426                &&  $MAKE > /dev/null 2>&1
427            if test -x ./makedepend.exe ; then
428                $LN ./makedepend.exe ./makedepend
429            fi
430            ./makedepend ifparser.c > /dev/null 2>&1  \
431                &&  echo "true"
432        ) > ./genmake_cy_md
433        grep true ./genmake_cy_md > /dev/null 2>&1
434        RETVAL=$?
435        rm -f ./genmake_cy_md
436        if test "x$RETVAL" = x0 ; then
437            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
438            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
439            return 0
440      else      else
441          echo "Error: \"ln -s\" does not appear to work on this system!"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
442          echo "  For help, please contact <MITgcm-support@mitgcm.org>."          return 1
         exit 1  
443      fi      fi
444      rm -f test link  }
445    
446      if test "x$CPP" = x ; then  build_embed_encode()
447          CPP="cpp -traditional -P"  {
448        printf "  building the embed-encode utility...  "
449        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
450            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
451                echo
452                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
453                echo
454                EMBED_SRC=f
455                return 1
456            fi
457            clist="cc gcc c89 $CC"
458            for ic in $clist ; do
459                comm="$ic -o encode_files encode_files.c"
460                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
461                RETVAL=$?
462                if test "x$RETVAL" = x0 ; then
463                    echo "OK"
464                    return 0
465                fi
466            done
467            echo
468            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
469            echo "      so it has been disabled"
470            echo
471            EMBED_SRC=f
472            return 1
473      fi      fi
474        echo "OK"
475    }
476    
477      # look for possible fortran compilers  #  look for possible C compilers
478      tmp="$MITGCM_FC $FC g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95"  look_for_C_compilers() {
479      p_FC=      echo >> $LOGFILE
480        echo "running: look_for_C_compilers()" >> $LOGFILE
481        rm -f ./genmake_hello.c  ./genmake_hello
482        cat >> genmake_hello.c << EOF
483    #include <stdio.h>
484    int main(int argc, char **argv) {
485      printf("Hello!\n");
486      return 0;
487    }
488    EOF
489        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
490        p_CC=
491      for c in $tmp ; do      for c in $tmp ; do
492          rm -f ./hello.f ./hello          COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
493          cat >> hello.f <<EOF          echo $COMM >> $LOGFILE
494            $COMM >> $LOGFILE 2>&1
495            RETVAL=$?
496            if test "x${RETVAL}" = x0 ; then
497                echo " $c test successful" >> $LOGFILE
498                p_CC="$p_CC $c"
499            fi
500        done
501        rm -f ./genmake_hello.c ./genmake_hello
502        if test "x${p_CC}" = x ; then
503            cat 1>&2 <<EOF
504    
505    Error: No C compilers were found in your path.  Please specify one using:
506    
507        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
508        2) the CC or MITGCM_CC environment variables.
509    
510    EOF
511            exit 1
512        else
513            echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
514            if test "x$CC" = x ; then
515                CC=`echo $p_CC | $AWK '{print $1}'`
516                echo "  Setting C compiler to: "$CC
517            fi
518        fi
519        echo " --> set CC='$CC'" >> $LOGFILE
520    }
521    
522    # Guess possible config options for this host
523    find_possible_optfile()  {
524    
525        echo >> $LOGFILE
526        echo "running: find_possible_optfile()" >> $LOGFILE
527        tmp1=`uname`"_"`uname -m`
528        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
529        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
530        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
531        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
532        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
533        PLATFORM=$tmp3
534        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
535        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
536        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
537    
538        #================================================================
539        #  look for possible FORTRAN compilers
540        echo "  look for possible FORTRAN compilers" >> $LOGFILE
541        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
542        p_FC=
543        rm -f ./genmake_hello.f
544        cat >> genmake_hello.f <<EOF
545        program hello        program hello
546        do i=1,3        do i=1,3
547          print *, 'hello world : ', i          print *, 'hello world : ', i
548        enddo        enddo
549        end        end
550  EOF  EOF
551          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
552            COMM="$f -o genmake_hello genmake_hello.f"
553            echo $COMM >> $LOGFILE
554            $COMM >> $LOGFILE 2>&1
555          RETVAL=$?          RETVAL=$?
556          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
557              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
558                p_FC="$p_FC $f"
559          fi          fi
560      done      done
561        rm -f ./genmake_hello.f ./genmake_hello
562      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
563          cat 1>&2 <<EOF          cat 1>&2 <<EOF
564    
# Line 128  Error: No Fortran compilers were found i Line 566  Error: No Fortran compilers were found i
566    
567      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),      1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
568      2) a command-line option (eg. "-fc NAME"), or      2) a command-line option (eg. "-fc NAME"), or
569      3) the MITGCM_FC environment variable.      3) the FC or MITGCM_FC environment variables.
570    
571  EOF  EOF
572          exit 1          exit 1
573      else      else
574          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
         if test "x$FC" = x ; then  
             FC=`echo $p_FC | $AWK '{print $1}'`  
         fi  
575      fi      fi
576    
577      for i in $p_FC ; do      #  Use the first of the compilers found in the current PATH
578          p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i      #  that has a correctly-named optfile
579          if test -r $p_OF ; then      if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
580              OPTFILE=$p_OF          for i in $p_FC ; do
581              echo "  The options file:  $p_OF"              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
582              echo "    appears to match so we'll use it."              if test -r $OPTFILE ; then
583              break                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
584                    break
585                fi
586            done
587        fi
588    
589        if test "x$OPTFILE" = x ; then
590            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
591            if test ! -r $OPTFILE ; then
592                 echo "  I looked for the file "$OPTFILE" but did not find it"
593          fi          fi
594      done      fi
595    
596      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
597          cat 1>&2 <<EOF          cat 1>&2 <<EOF
598    
# Line 164  Error: No options file was found in:  $R Line 608  Error: No options file was found in:  $R
608  EOF  EOF
609          exit 1          exit 1
610      fi      fi
611        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
612    
613    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
614    #  checking for additional included headers (in case of chain of included header)
615    mpi_headers_do_local_copy() {
616    
617        dBug=0
618        rm -rf ./mpi_headers
619        if test -d $MPIINCLUDEDIR ; then
620    
621            #----- check for additional headers (chain of included headers)
622            echo -n '  Check MPI headers ... '
623            listIni=$MPI_HEADER_FILES
624            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
625            outp=$?
626            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
627            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
628            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
629    
630            doCheck=1 ; list2copy='' ; list2check=$listIni
631            while test $doCheck = 1 ; do
632              newList=''
633              for i in $list2check ; do
634                if test -f $MPIINCLUDEDIR/$i ; then
635                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
636                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
637                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
638                  for j in $newInc ; do
639                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
640                    outp=$?
641                    if test $outp != 0 ; then
642                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
643                      newList="$newList $j"
644                    fi
645                  done
646                  if test $dBug = 1 ; then echo "" ; fi
647                fi
648              done
649              if test "x$newList" = x ; then doCheck=0
650              else list2check=$newList ; list2copy="$list2copy $newList"
651              fi
652            done
653            list2copy="$MPI_HEADER_FILES $list2copy"
654            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
655    
656            #----- create local mpi_headers dir if we have files to copy
657            mkListInc=`echo $list2copy | wc -w`
658            if test $mkListInc != 0 ; then
659              echo 'create local "./mpi_headers" dir'
660              mkdir -p ./mpi_headers
661              INCLUDES="-I./mpi_headers $INCLUDES"
662              mkListInc=1
663            fi
664            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
665    
666            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
667            for i in $list2copy ; do
668              if test -f $MPIINCLUDEDIR/$i ; then
669                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
670                if test $i = 'mpif.h' ; then
671                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
672                fi
673                if test $mkListInc = 2 ; then
674                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
675                fi
676                if test $mkListInc = 1 ; then
677                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
678                fi
679              fi
680            done
681        else
682            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
683            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
684    #       exit -1
685        fi
686  }  }
687    
688  #  Parse the package dependency information  #  Parse the package dependency information
# Line 202  get_pdepend_list()  { Line 691  get_pdepend_list()  {
691      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
692      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
693      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
694          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
695          > ./.pd_tmp          > ./.pd_tmp
696      source ./.pd_tmp      RETVAL=$?
697        if test ! "x${RETVAL}" = x0 ; then
698          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
699          exit 1
700        fi
701        . ./.pd_tmp
702      rm -f ./.pd_tmp      rm -f ./.pd_tmp
703    }
704    
705    #  Build a CPP macro to automate calling C routines from FORTRAN
706    get_fortran_c_namemangling()  {
707    
708        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
709        if test ! "x$FC_NAMEMANGLE" = x ; then
710            return 0
711        fi
712        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
713    
714        default_nm="#define FC_NAMEMANGLE(X) X ## _"
715    
716        cat > genmake_test.c <<EOF
717    void tcall( char * string ) { tsub( string ); }
718    EOF
719        COMM="$CC $CFLAGS -c genmake_test.c"
720        echo ' '$COMM >> $LOGFILE
721        $COMM >> $LOGFILE 2>&1
722        RETVAL=$?
723        if test "x$RETVAL" != x0 ; then
724            FC_NAMEMANGLE=$default_nm
725            cat <<EOF>> $LOGFILE
726    
727     WARNING: C test compile fails
728     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
729     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
730    EOF
731            return 1
732        fi
733        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
734        RETVAL=$?
735        if test "x$RETVAL" != x0 ; then
736            FC_NAMEMANGLE=$default_nm
737            cat <<EOF>> $LOGFILE
738    
739     WARNING: The "nm" command failed.
740     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
741     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
742    EOF
743            return 1
744        fi
745        cat > genmake_tcomp.$FS <<EOF
746          subroutine tcall( string )
747          character*(*) string
748          call tsub( string )
749          end
750    EOF
751        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
752        echo ' '$COMM >> $LOGFILE
753        $COMM >> $LOGFILE 2>&1
754        RETVAL=$?
755        if test "x$RETVAL" != x0 ; then
756            FC_NAMEMANGLE=$default_nm
757            cat <<EOF>> $LOGFILE
758    
759     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
760     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
761     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
762    EOF
763            return 1
764        fi
765        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
766        RETVAL=$?
767        if test "x$RETVAL" != x0 ; then
768            FC_NAMEMANGLE=$default_nm
769            cat <<EOF>> $LOGFILE
770    
771     WARNING: The "nm" command failed.
772     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
773     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
774    EOF
775            return 1
776        fi
777    
778        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
779        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
780        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
781        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
782    
783      echo -n "PNAME = "${}      nmangle="X"
784        if test "x$c_a" != "x$f_a" ; then
785            comm="echo x$f_a | sed -e 's|x$c_a||'"
786            a=`eval $comm`
787            nmangle="$a ## $nmangle"
788        fi
789        if test "x$c_b" != "x$f_b" ; then
790            comm="echo x$f_b | sed -e 's|x$c_b||'"
791            b=`eval $comm`
792            nmangle="$nmangle ## $b"
793        fi
794    
795        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
796    
797        #  cleanup the testing files
798        rm -f genmake_tcomp.* genmake_test.*
799    
800        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
801  }  }
802    
803    check_HAVE_CLOC()  {
804        echo >> $LOGFILE
805        echo "running: check_HAVE_CLOC()" >> $LOGFILE
806        get_fortran_c_namemangling
807        cat <<EOF > genmake_tc_1.c
808    $FC_NAMEMANGLE
809    #include <stdio.h>
810    #include <stdlib.h>
811    #include <unistd.h>
812    #include <assert.h>
813    #include <sys/time.h>
814    void FC_NAMEMANGLE(cloc) ( double *curtim )
815    {
816     struct timeval tv1;
817     gettimeofday(&tv1 , (void *)NULL );
818     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
819     *curtim = *curtim/1.E6;
820    }
821    EOF
822        COMM="$CC $CFLAGS -c genmake_tc_1.c"
823        echo $COMM >> $LOGFILE
824        $COMM >> $LOGFILE 2>&1
825        RET_C=$?
826        cat <<EOF > genmake_tc_2.$FS
827          program hello
828          REAL*8 wtime
829          external cloc
830          call cloc(wtime)
831          print *," HELLO WORLD", wtime
832          end
833    EOF
834        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
835        echo $COMM >> $LOGFILE
836        $COMM >> $LOGFILE 2>&1
837        RET_F=$?
838        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
839        RETVAL=$?
840        if test "x$RETVAL" = x0 ; then
841            HAVE_CLOC=t
842        fi
843        rm -f genmake_tc*
844        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
845    }
846    
847  #  Explain usage  check_HAVE_SIGREG()  {
848  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
849      echo          return
850      echo "Usage: "$0" [OPTIONS]"      fi
851      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
852      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
853      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
854      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
855      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
856      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
857      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
858      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
859      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
860      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
861      echo "    -make NAME | -m NAME"  
862      echo "      --make=NAME | -m=NAME"  int * ip;
863      echo "    -makefile NAME | -mf NAME"  
864      echo "      --makefile=NAME | -mf=NAME"  static void killhandler(
865      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
866      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  {
867      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      *ip = *ip + 1;
868      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      return;
869      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  }
870      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
871      echo "    -disable NAME | --disable NAME"  void FC_NAMEMANGLE(sigreg) (int * aip)
872      echo "      -disable=NAME | --disable=NAME"  {
873      echo "    -enable NAME | --enable NAME"      struct sigaction s;
874      echo "      -enable=NAME | --enable=NAME"      ip = aip;
875      echo "    -standarddirs NAME | --standarddirs NAME"      s.sa_flags = SA_SIGINFO;
876      echo "      -standarddirs=NAME | --standarddirs=NAME"      s.sa_sigaction = (void *)killhandler;
877      echo "    -noopt NAME | --noopt NAME"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
878      echo "      -noopt=NAME | --noopt=NAME"          printf("Sigaction returned error = %d\n", errno);
879  #    echo "    -cpp NAME | --cpp NAME"          exit(0);
880  #    echo "      -cpp=NAME | --cpp=NAME"      }
881      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"      return;
882      echo "      -fc=NAME | --fc=NAME"  }
883      echo "    -[no]ieee | --[no]ieee"  EOF
884      echo "    -[no]mpi | --[no]mpi"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
885      echo "    -[no]jam | --[no]jam"      echo $COMM >> $LOGFILE
886      echo      $COMM >> $LOGFILE 2>&1
887      echo "  and NAME is a string such as:"      RET_C=$?
888      echo      cat <<EOF > genmake_tc_2.$FS
889      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"        program hello
890      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"        integer anint
891      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        common /iv/ anint
892      echo        external sigreg
893      echo "  which, depending upon your shell, may need to be single-quoted"        call sigreg(anint)
894      echo "  if it contains spaces, dashes, or other special characters."        end
895      exit 1  EOF
896        cat genmake_tc_2.$FS >> $LOGFILE
897        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
898        echo $COMM >> $LOGFILE
899        $COMM >> $LOGFILE 2>&1
900        RETVAL=$?
901        if test "x$RETVAL" = x0 ; then
902            HAVE_SIGREG=t
903        fi
904        rm -f genmake_tc*
905        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
906    }
907    
908    check_HAVE_SETRLSTK()  {
909        if test ! "x$HAVE_SETRLSTK" = x ; then
910            return
911        fi
912        echo >> $LOGFILE
913        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
914        get_fortran_c_namemangling
915        cat <<EOF > genmake_tc_1.c
916    $FC_NAMEMANGLE
917    #include <sys/time.h>
918    #include <sys/resource.h>
919    #include <unistd.h>
920    void FC_NAMEMANGLE(setrlstk) ()
921    {
922        struct rlimit rls;
923        rls.rlim_cur = RLIM_INFINITY;
924        rls.rlim_max = RLIM_INFINITY;
925        setrlimit(RLIMIT_STACK, &rls);
926        return;
927    }
928    EOF
929        COMM="$CC $CFLAGS -c genmake_tc_1.c"
930        echo $COMM >> $LOGFILE
931        $COMM >> $LOGFILE 2>&1
932        RET_C=$?
933        cat <<EOF > genmake_tc_2.$FS
934          program hello
935          external setrlstk
936          call setrlstk()
937          end
938    EOF
939        cat genmake_tc_2.$FS >> $LOGFILE
940        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
941        echo $COMM >> $LOGFILE
942        $COMM >> $LOGFILE 2>&1
943        RETVAL=$?
944        if test "x$RETVAL" = x0 ; then
945            HAVE_SETRLSTK=t
946        fi
947        rm -f genmake_tc*
948        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
949    }
950    
951    check_HAVE_STAT()  {
952        echo >> $LOGFILE
953        echo "running: check_HAVE_STAT()" >> $LOGFILE
954        get_fortran_c_namemangling
955        cat <<EOF > genmake_tc_1.c
956    $FC_NAMEMANGLE
957    #include <stdio.h>
958    #include <stdlib.h>
959    #include <unistd.h>
960    #include <sys/stat.h>
961    #include <sys/types.h>
962    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
963    {
964        char name[512];
965        struct stat astat;
966    
967        name[0] = 'a'; name[1] = '\0';
968        if (! stat(name, &astat))
969            *nbyte = (int)(astat.st_size);
970        else
971            *nbyte = -1;
972    }
973    EOF
974        COMM="$CC $CFLAGS -c genmake_tc_1.c"
975        echo $COMM >> $LOGFILE
976        $COMM >> genmake_tc.log 2>&1
977        RET_C=$?
978        cat <<EOF > genmake_tc_2.$FS
979          program hello
980          integer nbyte
981          call tfsize(nbyte)
982          print *," HELLO WORLD", nbyte
983          end
984    EOF
985        cat genmake_tc_2.$FS >> $LOGFILE
986        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
987        echo $COMM >> $LOGFILE
988        $COMM >> genmake_tc.log 2>&1
989        RETVAL=$?
990        if test "x$RETVAL" = x0 ; then
991            HAVE_STAT=t
992        fi
993        rm -f genmake_tc*
994        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
995    }
996    
997    check_netcdf_libs()  {
998        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
999            return
1000        fi
1001        echo >> $LOGFILE
1002        echo "running: check_netcdf_libs()" >> $LOGFILE
1003        cat <<EOF > genmake_tnc.F
1004          program fgennc
1005    #include "netcdf.inc"
1006    EOF
1007       #if test ! "x$MPI" = x ; then
1008       #    echo '#include "mpif.h"' >> genmake_tnc.F
1009       #fi
1010        cat <<EOF >> genmake_tnc.F
1011          integer iret, ncid, xid
1012          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
1013          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014          iret = nf_def_dim(ncid, 'X', 11, xid)
1015          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1016          iret = nf_close(ncid)
1017          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1018          end
1019    EOF
1020        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1021        cat genmake_tnc.F >> genmake_tnc.log
1022        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1023        RET_CPP=f
1024        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1025        echo "$COMM" >> genmake_tnc.log
1026        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1027        if test "x$RET_CPP" = xf ; then
1028            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1029                >> genmake_tnc.log
1030            echo "    Please check that \$INCLUDES is properly set." \
1031                >> genmake_tnc.log
1032        fi
1033        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1034        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1035        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1036            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1037        RET_COMPILE=$?
1038        cat genmake_tnc.log >> $LOGFILE
1039    
1040        #EH3  Remove test program execution for machines that either disallow
1041        #EH3  execution or cannot support it (eg. cross-compilers)
1042        #EH3
1043        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1044        #EH3 RETVAL=$?
1045        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1046    
1047        if test "x$RET_COMPILE" = x0 ; then
1048            HAVE_NETCDF=t
1049            echo "check_netcdf: successful" >> $LOGFILE
1050        else
1051            # try again with "-lnetcdf" added to the libs
1052            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1053            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1054            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1055            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1056            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1057                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1058                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1059            RET_COMPILE=$?
1060            echo >> $LOGFILE
1061            cat genmake_tnc.log >> $LOGFILE
1062            if test "x$RET_COMPILE" = x0 ; then
1063                LIBS="$LIBS -lnetcdf"
1064                HAVE_NETCDF=t
1065                echo "check_netcdf: successful" >> $LOGFILE
1066            else
1067            # try again with "-lnetcdff" added to the libs
1068                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1069                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1070                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1071                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1072                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1073                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1074                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1075                RET_COMPILE=$?
1076                echo >> $LOGFILE
1077                cat genmake_tnc.log >> $LOGFILE
1078                if test "x$RET_COMPILE" = x0 ; then
1079                    LIBS="$LIBS -lnetcdff -lnetcdf"
1080                    HAVE_NETCDF=t
1081                    echo "check_netcdf: successful" >> $LOGFILE
1082                fi
1083            fi
1084        fi
1085        rm -f genmake_tnc*
1086        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1087  }  }
1088    
1089  #eh3 # This is the generic configuration.  check_lapack_libs()  {
1090  #eh3 set LN         = ( 'ln -s' )      if test "x$CHECK_FOR_LAPACK" = xf ; then return ; fi
1091  #eh3 set CPP        = ( '/lib/cpp -P' )      echo >> $LOGFILE
1092  #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )      echo "running: check_lapack_libs()" >> $LOGFILE
1093  #eh3 set KPP        = (  )      cat <<EOF > genmake_tla.F
1094  #eh3 set FC         = ( 'f77' )        program fgenla
1095  #eh3 set LINK       = $FC        integer info
1096  #eh3 set MAKEDEPEND = ( 'makedepend' )        integer ipiv( 2 )
1097  #eh3 set INCLUDES   = ( -I. )        double precision ab( 4, 2 ), b( 2 )
1098  #eh3 set FFLAGS     = (  )        data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1099  #eh3 set FOPTIM     = (  )        data b / 1., 1. /
1100  #eh3 set CFLAGS     = (  )        call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1101  #eh3 set KFLAGS1    = (  )        IF (info .NE. 0) write(*,*) 'Error:', info
1102  #eh3 set KFLAGS2    = (  )        write(*,*) b
1103  #eh3 set LIBS       = (  )        end
1104  #eh3 set KPPFILES   = (  )  EOF
1105  #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )      echo "===  genmake_tla.F  >>>" > genmake_tla.log
1106  #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )      cat genmake_tla.F >> genmake_tla.log
1107        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1108        RET_CPP=f
1109        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1110        echo "$COMM" >> genmake_tla.log
1111        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1112        if test "x$RET_CPP" = xf ; then
1113            echo "  WARNING: CPP failed to pre-process the lapack test." \
1114                >> genmake_tla.log
1115            echo "    Please check that \$INCLUDES is properly set." \
1116                >> genmake_tla.log
1117        fi
1118        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1119        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1120        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1121            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1122        RET_COMPILE=$?
1123        cat genmake_tla.log >> $LOGFILE
1124    
1125        # test program execution not always possible (see check_netcdf_libs)
1126        #
1127        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1128        #RETVAL=$?
1129        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1130    
1131        if test "x$RET_COMPILE" = x0 ; then
1132            HAVE_LAPACK=t
1133            echo "check_lapack: successful" >> $LOGFILE
1134        else
1135            # try again with "-llapack" added to the libs
1136            echo "==> try again with added '-llapack'" > genmake_tla.log
1137            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1138            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1139            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1140            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1141                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1142                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1143            RET_COMPILE=$?
1144            echo >> $LOGFILE
1145            cat genmake_tla.log >> $LOGFILE
1146            if test "x$RET_COMPILE" = x0 ; then
1147                LIBS="$LIBS -llapack"
1148                HAVE_LAPACK=t
1149                echo "check_lapack: successful" >> $LOGFILE
1150            else
1151            # try again with "-lf77blas -lcblas" added to the libs
1152                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1153                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1154                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1155                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1156                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1157                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1158                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1159                RET_COMPILE=$?
1160                echo >> $LOGFILE
1161                cat genmake_tla.log >> $LOGFILE
1162                if test "x$RET_COMPILE" = x0 ; then
1163                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1164                    HAVE_LAPACK=t
1165                    echo "check_lapack: successful" >> $LOGFILE
1166                else
1167                # try again with "-latlas" added to the libs
1168                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1169                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1170                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1171                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1172                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1173                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1174                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1175                    RET_COMPILE=$?
1176                    echo >> $LOGFILE
1177                    cat genmake_tla.log >> $LOGFILE
1178                    if test "x$RET_COMPILE" = x0 ; then
1179                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1180                        HAVE_LAPACK=t
1181                        echo "check_lapack: successful" >> $LOGFILE
1182                    fi
1183                fi
1184            fi
1185        fi
1186        rm -f genmake_tla*
1187        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1188    }
1189    
1190    check_HAVE_FLUSH()  {
1191        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1192            return
1193        fi
1194        echo >> $LOGFILE
1195        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1196        cat <<EOF > genmake_tflsh.$FS
1197          program fgenflsh
1198          integer iounit
1199          character*9 fname
1200          iounit = 26
1201          fname = 'tmp.tflsh'
1202          open(iounit,FILE=fname,STATUS='unknown')
1203          write(iounit,*) 'genmake_tflsh: hello'
1204          call flush(iounit)
1205          close(iounit)
1206          end
1207    EOF
1208        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1209        cat genmake_tflsh.$FS >> genmake_tflsh.log
1210        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1211    
1212        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1213        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1214        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1215            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1216        RET_COMPILE=$?
1217    
1218        if test "x$RET_COMPILE" = x0 ; then
1219            HAVE_FLUSH=t
1220            #cat genmake_tflsh.log >> $LOGFILE
1221            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1222        else
1223            HAVE_FLUSH=f
1224            cat genmake_tflsh.log >> $LOGFILE
1225        fi
1226        rm -f genmake_tflsh*
1227        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1228    }
1229    
1230    ###############################################################################
1231    #   Sequential part of script starts here
1232    ###############################################################################
1233    
1234  #  Set defaults here  #  Set defaults here
1235  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 288  PLATFORM= Line 1238  PLATFORM=
1238  LN=  LN=
1239  S64=  S64=
1240  KPP=  KPP=
1241  FC=  #FC=
1242    #CC=gcc
1243    #CPP=
1244  LINK=  LINK=
1245  DEFINES="-DWORDLENGTH=4"  DEFINES=
1246  PACKAGES=  PACKAGES=
1247  ENABLE=  ENABLE=
1248  DISABLE=  DISABLE=
1249  MAKEFILE=  # MAKEFILE=
1250  MAKEDEPEND=  # MAKEDEPEND=
1251  PDEPEND=  PKG_DEPEND=
1252  DUMPSTATE=t  PKG_GROUPS=
1253  PDEFAULT=  DUMPSTATE=f
1254  OPTFILE=  OPTFILE=
1255  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1256  FFLAGS=  FFLAGS=
1257  FOPTIM=  FOPTIM=
1258    FEXTRAFLAGS=
1259    USE_EXTENDED_SRC=
1260    EXTENDED_SRC_FLAG=
1261    GET_FC_VERSION=
1262  CFLAGS=  CFLAGS=
1263  KFLAGS1=  KFLAGS1=
1264  KFLAGS2=  KFLAGS2=
1265    #LDADD=
1266  LIBS=  LIBS=
1267  KPPFILES=  KPPFILES=
1268  NOOPTFILES=  NOOPTFILES=
1269  NOOPTFLAGS=  NOOPTFLAGS=
1270    MPI=
1271    MPIPATH=
1272    OMP=
1273    OMPFLAG=
1274    USE_R4=
1275    TS=
1276    PAPIS=
1277    PCLS=
1278    FOOLAD=
1279    PAPI=
1280    PCL=
1281    HPMT=
1282    GSL=
1283    DEVEL=
1284    HAVE_TEST_L=
1285    
1286    # set this to "t" to enable lapack test
1287    CHECK_FOR_LAPACK=f
1288    
1289    # DEFINES checked by test compilation or command-line
1290    HAVE_SYSTEM=
1291    HAVE_FDATE=
1292    FC_NAMEMANGLE=
1293    HAVE_CLOC=
1294    # HAVE_SETRLSTK=
1295    HAVE_STAT=
1296    HAVE_NETCDF=
1297    HAVE_ETIME=
1298    IGNORE_TIME=
1299    HAVE_LAPACK=
1300    HAVE_FLUSH=
1301    
1302  MODS=  MODS=
1303  TOOLSDIR=  TOOLSDIR=
1304  SOURCEDIRS=  SOURCEDIRS=
1305  INCLUDEDIRS=  INCLUDEDIRS=
1306  STANDARDDIRS=  STANDARDDIRS="USE_THE_DEFAULT"
1307    
1308    #- local config file
1309    gm_local="genmake_local"
1310    
1311    G2ARGS=
1312    BASH=
1313  PWD=`pwd`  PWD=`pwd`
1314  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1315  AWK=awk  test "x$AWK" = x   &&  AWK=awk
1316  THISHOSTNAME=`hostname`  EMBED_SRC=
1317    THISHOST=`hostname`
1318  THISCWD=`pwd`  THISCWD=`pwd`
1319  THISDATE=`date`  THISDATE=`date`
1320    THISUSER=`echo $USER`
1321    THISVER=
1322  MACHINE=`uname -a`  MACHINE=`uname -a`
1323  EXECUTABLE=  EXECUTABLE=
1324  EXEHOOK=  EXEHOOK=
1325  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1326  IEEE=  IEEE=
1327  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1328      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
1329  fi  fi
1330    FS=
1331    FS90=
1332    
1333  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1334    OPENAD=
1335  AD_OPTFILE=  AD_OPTFILE=
1336    CAT_SRC_FOR_TAF=1
1337  TAF=  TAF=
1338  AD_TAF_FLAGS=  AD_TAF_FLAGS=
1339  FTL_TAF_FLAGS=  FTL_TAF_FLAGS=
# Line 346  FTL_TAF_FLAGS= Line 1345  FTL_TAF_FLAGS=
1345  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1346  TAMC_EXTRA=  TAMC_EXTRA=
1347    
1348    DIVA=
1349    MPIINCLUDEDIR=
1350    MPI_HEADER_FILES=
1351    LOCAL_MPI_HEADERS=
1352    
1353  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1354  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1355  gm_s2="FC IEEE MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1356    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1357    
1358  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1359  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1360  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1361  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1362  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1363    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1364    
1365  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1366  gm_s7="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1367  gm_s8="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1368  gm_s9="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1369    
1370  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8 $gm_s9"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1371    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1372    
1373    cat <<EOF
1374    
1375    GENMAKE :
1376    
1377    A program for GENerating MAKEfiles for the MITgcm project.
1378       For a quick list of options, use "genmake2 -h"
1379    or for more detail see the Developer's HOWTO manual at:
1380       http://mitgcm.org/public/docs.html
1381    
1382    EOF
1383    
1384    LOGFILE="genmake.log"
1385    #- clean-up previous genmake logfiles:
1386    rm -f genmake_state genmake_*optfile $LOGFILE
1387    
 echo  
1388  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         source $i/$gm_local  
         break  
     fi  
 done  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1389    
1390  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1391  #parse_options  #parse_options
1392  ac_prev=  ac_prev=
1393  for ac_option ; do  for ac_option in "$@" ; do
1394    
1395        G2ARGS="$G2ARGS \"$ac_option\""
1396    
1397      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1398      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 404  for ac_option ; do Line 1400  for ac_option ; do
1400          ac_prev=          ac_prev=
1401          continue          continue
1402      fi      fi
1403        
1404      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1405        
1406      case $ac_option in      case $ac_option in
1407            
1408          -help | --help | -h | --h)          -help | --help | -h | --h)
1409              usage ;;              usage ;;
1410            
1411          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1412              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1413          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1414              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1415          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1416              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1417            
1418          -adoptfile | --adoptfile | -ad | --ad)          -oad | --oad)
1419                OPENAD="true" ; ALWAYS_USE_F90=1 ;;
1420            -nocat4ad | -dog4ad | -ncad | -dad)
1421                CAT_SRC_FOR_TAF=0 ;;
1422            -adoptfile | --adoptfile | -adof | --adof)
1423              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1424          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1425              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1426            
1427          -pdepend | --pdepend)          -pdepend | --pdepend)
1428              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1429          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1430              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1431            
1432          -pdefault | --pdefault)          -pgroups | --pgroups)
1433              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1434          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1435              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1436            
1437          -make | --make | -m | --m)          -make | --make | -m | --m)
1438              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1439          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1440              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1441            
1442          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1443                ac_prev=BASH ;;
1444            -bash=* | --bash=*)
1445                BASH=$ac_optarg ;;
1446    
1447            -makedepend | --makedepend | -md | --md)
1448                ac_prev=MAKEDEPEND ;;
1449            -makedepend=* | --makedepend=* | -md=* | --md=*)
1450                MAKEDEPEND=$ac_optarg ;;
1451    
1452            -makefile | --makefile | -mf | --mf)
1453              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1454          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1455              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1456            
1457          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1458              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1459          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1460              PLATFORM=$ac_optarg ;;              echo
1461                        usage
1462                ;;
1463    
1464          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1465              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1466          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1467              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1468            
1469          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1470              ac_prev=MODS ;;              ac_prev=MODS ;;
1471          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1472              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1473            
1474          -disable | --disable)          -disable | --disable)
1475              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1476          -disable=* | --disable=*)          -disable=* | --disable=*)
1477              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1478            
1479          -enable | --enable)          -enable | --enable)
1480              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1481          -enable=* | --enable=*)          -enable=* | --enable=*)
1482              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1483            
1484          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1485              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1486          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
1487              STANDARDDIRS=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1488    
         -noopt | --noopt)  
             ac_prev=NOOPT ;;  
         -noopt=* | --noopt=*)  
             NOOPT=$ac_optarg ;;  
           
1489  #           -cpp | --cpp)  #           -cpp | --cpp)
1490  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1491  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1492  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1493                
1494            -cc | --cc)
1495                ac_prev=CC ;;
1496            -cc=* | --cc=*)
1497                CC=$ac_optarg ;;
1498    
1499          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1500              ac_prev=FC ;;              ac_prev=FC ;;
1501          -fc=* | --fc=*)          -fc=* | --fc=*)
1502              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1503            
1504            -fs | --fs)
1505                ac_prev=FS ;;
1506            -fs=* | --fs=*)
1507                FS=$ac_optarg ;;
1508    
1509            -fs90 | --fs90)
1510                ac_prev=FS90 ;;
1511            -fs90=* | --fs90=*)
1512                FS90=$ac_optarg ;;
1513    
1514            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1515                USE_R4=true ;;
1516    
1517          -ieee | --ieee)          -ieee | --ieee)
1518              IEEE=true ;;              IEEE=true ;;
1519          -noieee | --noieee)          -noieee | --noieee)
1520              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1521                    -devel | --devel)
1522                IEEE=true ; DEVEL=true ;;
1523            -gsl | --gsl)
1524                GSL=true ;;
1525    
1526            -ts | --ts)
1527                TS=true ;;
1528            -papis | --papis)
1529                PAPIS=true ;;
1530            -pcls | --pcls)
1531                PCLS=true ;;
1532            -foolad | --foolad)
1533                FOOLAD=true ;;
1534            -papi | --papi)
1535                PAPI=true ;;
1536            -pcl | --pcl)
1537                PCL=true ;;
1538            -hpmt | --hpmt)
1539                HPMT=true ;;
1540    
1541          -mpi | --mpi)          -mpi | --mpi)
1542              MPI=true ;;              MPI=true ;;
1543          -nompi | --nompi)          -mpi=* | --mpi=*)
1544              MPI= ;;              MPIPATH=$ac_optarg
1545                        MPI=true ;;
1546          -jam | --jam)  
1547              JAM=1 ;;          -omp | --omp)
1548          -nojam | --nojam)              OMP=true ;;
1549              JAM=0 ;;          -omp=* | --omp=*)
1550                        OMPFLAG=$ac_optarg
1551                OMP=true ;;
1552    
1553          -ds | --ds)          -ds | --ds)
1554              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1555            
1556            -extra_flag | --extra_flag)
1557                ac_prev=FEXTRAFLAGS ;;
1558            -extra_flag=* | --extra_flag=*)
1559                FEXTRAFLAGS=$ac_optarg ;;
1560    
1561          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1562              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1563          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 517  for ac_option ; do Line 1568  for ac_option ; do
1568          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1569              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1570    
1571            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1572                IGNORE_TIME="-DIGNORE_TIME" ;;
1573    
1574            -es | --es | -embed-source | --embed-source)
1575                EMBED_SRC=t ;;
1576    
1577          -*)          -*)
1578              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582          *)          *)
1583              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1584              usage              usage
1585              ;;              ;;
1586            
1587      esac      esac
1588        
1589  done  done
1590    
1591    #TMP=./genmk_$$
1592    #- try to put temporary files in system-local /tmp dir
1593    TMP=/tmp/genmk_$$
1594    touch $TMP ; retVal=$?
1595    if [ $retVal -eq 0 ] ; then
1596      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1597    else
1598      TMP=./genmk_$$
1599    fi
1600    rm -f $TMP
1601    #echo "  temp files: $TMP.*"
1602    
1603    printf "  getting local config information:  "
1604    if test -f $gm_local ; then
1605        echo "using $gm_local"
1606        . $gm_local
1607    else
1608        echo "none found"
1609    fi
1610    
1611  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1612      echo      echo
1613      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1614      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1615      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1616      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1617        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1618        echo "WARNING: ignore \"./.genmakerc\" and continue."
1619      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1620  fi  fi
1621    
1622    #  Find the MITgcm ${ROOTDIR}
1623  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1624      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1625        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1626          ROOTDIR=".."          ROOTDIR=".."
1627      else      else
1628          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1629              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1630                  ROOTDIR=$d                  ROOTDIR=$d
1631                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1632                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1633                  break                  break
1634              fi              fi
1635          done          done
# Line 568  if test ! -d ${ROOTDIR} ; then Line 1646  if test ! -d ${ROOTDIR} ; then
1646      exit 1      exit 1
1647  fi  fi
1648    
1649  echo "  getting OPTFILE information:  "  #  Find the MITgcm ${THISVER}
1650    version_file="${ROOTDIR}/doc/tag-index"
1651    if test -f $version_file ; then
1652        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1653    #-  remove ./BUILD_INFO.h file if older than version_file
1654        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1655            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1656            rm -f ./BUILD_INFO.h
1657        fi
1658    fi
1659    
1660    if test "x$MAKEFILE" = x ; then
1661        MAKEFILE="Makefile"
1662    fi
1663    
1664    echo "  getting OPTFILE information:"
1665  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1666      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1667          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1668          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1669          find_possible_configs          find_possible_optfile
1670      else      else
1671          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1672      fi      fi
# Line 581  fi Line 1674  fi
1674  if test "x$OPTFILE" != xNONE ; then  if test "x$OPTFILE" != xNONE ; then
1675      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then      if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1676          echo "    using OPTFILE=\"$OPTFILE\""          echo "    using OPTFILE=\"$OPTFILE\""
1677          source "$OPTFILE"          . "$OPTFILE"
1678          RETVAL=$?          RETVAL=$?
1679          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1680              echo -n "Error: failed to source OPTFILE \"$OPTFILE\""              printf "Error: failed to source OPTFILE \"$OPTFILE\""
1681              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1682              exit 1              exit 1
1683          fi          fi
1684          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1685              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1686          fi          fi
1687      else      else
# Line 597  if test "x$OPTFILE" != xNONE ; then Line 1690  if test "x$OPTFILE" != xNONE ; then
1690      fi      fi
1691  fi  fi
1692    
1693  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1694  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1695      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1696            AD_OPTFILE=$MITGCM_AD_OF
1697        elif test "x$OPENAD" = x ; then
1698          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1699      else      else
1700          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1701      fi      fi
1702  fi  fi
1703  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
1704      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then      if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1705          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""          echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1706          source "$AD_OPTFILE"          . "$AD_OPTFILE"
1707          RETVAL=$?          RETVAL=$?
1708          if test "x$RETVAL" != x0 ; then          if test "x$RETVAL" != x0 ; then
1709              echo -n "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""              printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1710              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1711              exit 1              exit 1
1712          fi          fi
1713          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1714              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1715          fi          fi
1716      else      else
# Line 624  if test "x${AD_OPTFILE}" != xNONE ; then Line 1719  if test "x${AD_OPTFILE}" != xNONE ; then
1719      fi      fi
1720  fi  fi
1721    
1722  #  Check that FC, LINK, CPP, and S64 are defined.  If not, complain  #====================================================================
1723  #  and abort!  #  Set default values if not set by the optfile
1724    #
1725    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1726    #  either set defaults or complain and abort!
1727    if test ! "x$BASH" = x ; then
1728        # add a trailing space so that it works within the Makefile syntax (see below)
1729        BASH="$BASH "
1730    fi
1731  if test "x$FC" = x ; then  if test "x$FC" = x ; then
1732      cat <<EOF 1>&2      cat <<EOF 1>&2
1733    
# Line 636  Error: no Fortran compiler: please speci Line 1738  Error: no Fortran compiler: please speci
1738  EOF  EOF
1739      exit 1      exit 1
1740  fi  fi
1741    if test "x$GET_FC_VERSION" != x ; then
1742      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1743      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1744      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1745      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1746      if test -s genmake_fc_vers1 ; then
1747        cat genmake_fc_vers1 >> $LOGFILE
1748      else
1749        cat genmake_fc_vers2 >> $LOGFILE
1750      fi
1751      echo "<-- compiler version ----" >> $LOGFILE
1752      rm -f genmake_fc_vers1 genmake_fc_vers2
1753    fi
1754    
1755    if test "x$CC" = x ; then
1756        look_for_C_compilers
1757    fi
1758    
1759  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1760      LINK=$FC      LINK=$FC
1761  fi  fi
1762    if test "x$MAKE" = x ; then
1763        MAKE="make"
1764    fi
1765  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1766      CPP="cpp"      CPP="cpp -traditional -P"
1767  fi  fi
1768    #EH3 === UGLY ===
1769    #  The following is an ugly little hack to check for $CPP in /lib/ and
1770    #  it should eventually be replaced with a more general function that
1771    #  searches a combo of the user's path and a list of "usual suspects"
1772    #  to find the correct location for binaries such as $CPP.
1773    for i in " " "/lib/" ; do
1774        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1775    done
1776    #EH3 === UGLY ===
1777  echo "#define A a" | $CPP > test_cpp 2>&1  echo "#define A a" | $CPP > test_cpp 2>&1
1778  RETVAL=$?  RETVAL=$?
1779  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
# Line 651  Error: C pre-processor "$CPP" failed the Line 1783  Error: C pre-processor "$CPP" failed the
1783    
1784    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"    1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1785    2) the "./genmake_local" file    2) the "./genmake_local" file
1786      3) with the CPP environment variable
1787    
1788  EOF  EOF
1789      exit 1      exit 1
1790  else  else
1791      rm -f test_cpp      rm -f test_cpp
1792  fi  fi
1793  if test "x$MAKEDEPEND" = x ; then  
1794      MAKEDEPEND=makedepend  look_for_makedepend
1795    
1796    #  Check that soft-link command is set and usable
1797    if test "x$LN" = x ; then
1798        LN="ln -s"
1799    fi
1800    echo "test" > genmake_test_ln
1801    $LN genmake_test_ln genmake_tlink
1802    RETVAL=$?
1803    if test "x$RETVAL" != x0 ; then
1804        cat <<EOF 1>&2
1805    
1806    Error: The command "$LN" failed -- please specify a working soft-link
1807      command in the optfile.
1808    
1809    EOF
1810        exit 1
1811    fi
1812    test -L genmake_tlink > /dev/null 2>&1
1813    RETVAL=$?
1814    if test "x$RETVAL" = x0 ; then
1815        HAVE_TEST_L=t
1816    fi
1817    rm -f genmake_test_ln genmake_tlink
1818    
1819    #  Check for broken *.F/*.f handling and fix if possible
1820    check_for_broken_Ff
1821    
1822    if test ! "x$MPI" = x ; then
1823          echo "  Turning on MPI cpp macros"
1824          DEFINES="$DEFINES -DALLOW_USE_MPI"
1825    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1826    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1827    fi
1828    if test ! "x$OMP" = x ; then
1829          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1830          FFLAGS="$FFLAGS $OMPFLAG"
1831          F90FLAGS="$F90FLAGS $OMPFLAG"
1832          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1833    fi
1834    
1835    if test ! "x$USE_R4" = x ; then
1836          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1837          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1838    fi
1839    
1840    if test ! "x$TS" = x ; then
1841          echo "  Turning on timing per timestep"
1842          if test ! "x$FOOLAD" = x ; then
1843                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1844          else
1845                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1846          fi
1847          PACKAGES="$PACKAGES showflops"
1848    fi
1849    if test ! "x$PAPIS" = x ; then
1850          echo "  Turning on PAPI flop summary per timestep"
1851          echo "  Please make sure PAPIINC, PAPILIB are defined"
1852          if test ! "x$FOOLAD" = x ; then
1853                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1854          else
1855                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1856          fi
1857          INCLUDES="$INCLUDES $PAPIINC"
1858          LIBS="$LIBS $PAPILIB"
1859          PACKAGES="$PACKAGES showflops"
1860    fi
1861    if test ! "x$PCLS" = x ; then
1862          echo "  Turning on PCL counter summary per timestep"
1863          echo "  Please make sure PCLINC, PCLLIB are defined"
1864          if test ! "x$FOOLAD" = x ; then
1865                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1866          else
1867                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1868          fi
1869          INCLUDES="$INCLUDES $PCLINC"
1870          LIBS="$LIBS $PCLLIB"
1871          PACKAGES="$PACKAGES showflops"
1872    fi
1873    if test ! "x$PAPI" = x ; then
1874          if test ! "x$PAPIS" = x ; then
1875              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1876              echo "  Sticking with PAPI flop summary per timestep!"
1877          else
1878              echo "  Turning on performance analysis with PAPI"
1879              echo "  Please make sure PAPIINC, PAPILIB are defined"
1880              DEFINES="$DEFINES -DUSE_PAPI"
1881              INCLUDES="$INCLUDES $PAPIINC"
1882              LIBS="$LIBS $PAPILIB"
1883          fi
1884    fi
1885    if test ! "x$PCL" = x ; then
1886          if test ! "x$PCLS" = x ; then
1887              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1888              echo "  Sticking with PCL flop summary per timestep!"
1889          else
1890              echo "  Turning on performance analysis with PCL"
1891              echo "  Please make sure PCLINC, PCLLIB are defined"
1892              DEFINES="$DEFINES -DUSE_PCL"
1893              INCLUDES="$INCLUDES $PCLINC"
1894              LIBS="$LIBS $PCLLIB"
1895          fi
1896    fi
1897    if test ! "x$HPMT" = x ; then
1898          if test ! "x$PAPI" = x ; then
1899              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1900              echo "  Sticking with PAPI!"
1901          else
1902            if test ! "x$PCL" = x ; then
1903              echo "  PCL and the HPM Toolkit cannot co-exist!"
1904              echo "  Sticking with PCL!"
1905            else
1906              echo "  Turning on performance analysis with the HPM Toolkit"
1907              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1908              DEFINES="$DEFINES -DUSE_LIBHPM"
1909              INCLUDES="$INCLUDES $HPMTINC"
1910              LIBS="$LIBS $HPMTLIB"
1911            fi
1912          fi
1913    fi
1914    if test ! "x$GSL" = x ; then
1915          echo "  Turning on use of GSL to control floating point calculations"
1916          echo "  Please make sure GSLINC, GSLLIB are defined"
1917          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1918          INCLUDES="$INCLUDES $GSLINC"
1919          LIBS="$LIBS $GSLLIB"
1920    fi
1921    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1922    if test ! "x$USE_EXTENDED_SRC" = x ; then
1923          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1924          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1925    fi
1926    
1927    printf "\n===  Checking system libraries  ===\n"
1928    printf "  Do we have the system() command using $FC...  "
1929    cat > genmake_tcomp.$FS <<EOF
1930          program hello
1931          call system('echo hi')
1932          end
1933    EOF
1934    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1935    RETVAL=$?
1936    if test "x$RETVAL" = x0 ; then
1937        HAVE_SYSTEM=t
1938        DEFINES="$DEFINES -DHAVE_SYSTEM"
1939        echo "yes"
1940    else
1941        HAVE_SYSTEM=
1942        echo "no"
1943    fi
1944    rm -f genmake_tcomp*
1945    
1946    printf "  Do we have the fdate() command using $FC...  "
1947    cat > genmake_tcomp.$FS <<EOF
1948          program hello
1949          CHARACTER*(128) string
1950          string = ' '
1951          call fdate( string )
1952          print *, string
1953          end
1954    EOF
1955    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1956    RETVAL=$?
1957    if test "x$RETVAL" = x0 ; then
1958        HAVE_FDATE=t
1959        DEFINES="$DEFINES -DHAVE_FDATE"
1960        echo "yes"
1961    else
1962        HAVE_FDATE=
1963        echo "no"
1964    fi
1965    rm -f genmake_tcomp*
1966    
1967    printf "  Do we have the etime() command using $FC...  "
1968    cat > genmake_tcomp.$FS <<EOF
1969          program hello
1970          REAL*4 ACTUAL, TARRAY(2)
1971          EXTERNAL ETIME
1972          REAL*4 ETIME
1973          actual = etime( tarray )
1974          print *, tarray
1975          end
1976    EOF
1977    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1978    RETVAL=$?
1979    if test "x$RETVAL" = x0 ; then
1980        HAVE_ETIME=t
1981        DEFINES="$DEFINES -DHAVE_ETIME"
1982        echo "yes"
1983    else
1984        HAVE_ETIME=
1985        echo "no"
1986    fi
1987    rm -f genmake_tcomp*
1988    
1989    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1990    check_HAVE_CLOC
1991    if test "x$HAVE_CLOC" != x ; then
1992        DEFINES="$DEFINES -DHAVE_CLOC"
1993        echo "yes"
1994    else
1995        echo "no"
1996        if test "x$EMBED_SRC" = xt ; then
1997            echo "    WARNING: you requested file embedding but it has"
1998            echo "      been disabled since C code cannot be called"
1999            EMBED_SRC=
2000        fi
2001    fi
2002    rm -f genmake_t*
2003    
2004    printf "  Can we unlimit the stack size using $FC...  "
2005    check_HAVE_SETRLSTK
2006    if test "x$HAVE_SETRLSTK" = xt ; then
2007        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2008        echo "yes"
2009    else
2010        echo "no"
2011    fi
2012    rm -f genmake_t*
2013    
2014    printf "  Can we register a signal handler using $FC...  "
2015    check_HAVE_SIGREG
2016    if test "x$HAVE_SIGREG" = xt ; then
2017        DEFINES="$DEFINES -DHAVE_SIGREG"
2018        echo "yes"
2019    else
2020        echo "no"
2021    fi
2022    rm -f genmake_t*
2023    
2024    printf "  Can we use stat() through C calls...  "
2025    check_HAVE_STAT
2026    if test "x$HAVE_STAT" != x ; then
2027        DEFINES="$DEFINES -DHAVE_STAT"
2028        echo "yes"
2029    else
2030        echo "no"
2031    fi
2032    rm -f genmake_t*
2033    
2034    printf "  Can we create NetCDF-enabled binaries...  "
2035    check_netcdf_libs
2036    if test "x$HAVE_NETCDF" != x ; then
2037        DEFINES="$DEFINES -DHAVE_NETCDF"
2038        echo "yes"
2039    else
2040        echo "no"
2041    fi
2042    
2043    printf "  Can we create LAPACK-enabled binaries...  "
2044    check_lapack_libs
2045    if test "x$HAVE_LAPACK" != x ; then
2046        DEFINES="$DEFINES -DHAVE_LAPACK"
2047        echo "yes"
2048    else
2049        echo "no"
2050    fi
2051    
2052    printf "  Can we call FLUSH intrinsic subroutine...  "
2053    check_HAVE_FLUSH
2054    if test "x$HAVE_FLUSH" = xt ; then
2055        DEFINES="$DEFINES -DHAVE_FLUSH"
2056        echo "yes"
2057    else
2058        echo "no"
2059    fi
2060    
2061    DEFINES="$DEFINES $IGNORE_TIME"
2062    if test "x$EMBED_SRC" = xt ; then
2063        build_embed_encode
2064    fi
2065    if test "x$EMBED_SRC" = xt ; then
2066        ENABLE="$ENABLE embed_files"
2067    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2068  fi  fi
2069    
2070  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2071  echo -n "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2072  for d in $MODS ; do  for d in $MODS ; do
2073      if test ! -d $d ; then      if test ! -d $d ; then
2074          echo          echo
2075          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2076          exit 1          exit 1
2077      else      else
2078          echo -n " $d"          printf "$d "
2079          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2080          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2081      fi      fi
2082  done  done
2083  echo  echo
2084    
2085  if test "x$MAKEFILE" = x ; then  #if test "x${PLATFORM}" = x ; then
2086      MAKEFILE="Makefile"  #    PLATFORM=$p_PLATFORM
2087  fi  #fi
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
 fi  
2088    
2089  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2090      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2091        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2092          EXEDIR=../exe          EXEDIR=../exe
2093      else      else
2094          EXEDIR=.          EXEDIR=.
# Line 699  if test "x${TOOLSDIR}" = x ; then Line 2103  if test "x${TOOLSDIR}" = x ; then
2103      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2104  fi  fi
2105  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2106      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2107      exit 1      exit 1
2108  fi  fi
2109  if test "x$S64" = x ; then  if test "x$S64" = x ; then
2110      S64='$(TOOLSDIR)/set64bitConst.sh'      echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2111        RETVAL=$?
2112        if test "x${RETVAL}" = x0 ; then
2113            S64='$(TOOLSDIR)/set64bitConst.sh'
2114        else
2115            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2116            RETVAL=$?
2117            if test "x${RETVAL}" = x0 ; then
2118                S64='$(TOOLSDIR)/set64bitConst.csh'
2119            else
2120                cat <<EOF
2121    
2122    ERROR: neither of the two default scripts:
2123    
2124        ${TOOLSDIR}/set64bitConst.sh
2125        ${TOOLSDIR}/set64bitConst.csh
2126    
2127      are working so please check paths or specify (with \$S64) a
2128      working version of this script.
2129    
2130    EOF
2131                exit 1
2132            fi
2133        fi
2134  fi  fi
2135    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2136    
2137  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2138    
2139    #  Set Standard Code Directories:
2140    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2141        STANDARDDIRS="eesupp model"
2142    fi
2143    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2144    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2145    ckM=$?
2146    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2147    ckE=$?
2148    if test $ckM = 0 -a $ckE = 1 ; then
2149        STANDARDDIRS="$STANDARDDIRS eesupp"
2150    fi
2151    
2152  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2153  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2154  #  they appear as regular source code  #  they appear as regular source code
2155  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2156      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2157      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2158        ) > make_eesupp.errors 2>&1
2159      RETVAL=$?      RETVAL=$?
2160      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2161          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2162      else      else
2163          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2164          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2165          exit 1          exit 1
2166      fi      fi
2167  fi  fi
2168    
2169    #same for pkg/exch2 and pkg/regrid
2170    for pdir in exch2 regrid ; do
2171        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2172            echo "  Making source files in pkg/${pdir} from templates"
2173            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2174            ) > make_${pdir}.errors 2>&1
2175            RETVAL=$?
2176            if test "x${RETVAL}" = x0 ; then
2177                rm -f make_${pdir}.errors
2178            else
2179                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2180                cat make_${pdir}.errors 1>&2
2181                exit 1
2182            fi
2183        fi
2184    done
2185    
2186  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2187  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2188      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2189      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2190          PDEPEND=$tmp  fi
2191      else  if  test "x${PKG_DEPEND}" = x ; then
2192          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2193          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2194  else  else
2195      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2196          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2197          exit 1          exit 1
2198      fi      fi
2199        echo "  getting package dependency info from  $PKG_DEPEND"
2200    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2201        get_pdepend_list $PKG_DEPEND
2202  fi  fi
2203  echo "  getting package dependency info from  $PDEPEND"  
2204  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2205  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2206  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2207      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2208      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2209  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2210  if test ! "x${RETVAL}" = x0 ; then  fi
2211      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2212      exit 1          echo "Warning:  No package groups information was specified."
2213            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2214    else
2215        if test ! -r ${PKG_GROUPS} ; then
2216            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2217            exit 1
2218        fi
2219        echo "  getting package groups info from      $PKG_GROUPS"
2220  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2221    
2222  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2223  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2224  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2225  echo  -n "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2226      for i in "." $MODS ; do      for i in "." $MODS ; do
2227          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2228                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2229                  break                  break
2230          fi          fi
2231      done      done
2232  fi  fi
2233  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2234      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2235  fi      if test "x${PKG_GROUPS}" = x ; then
2236  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2237      echo "default packages file disabled"          exit 1
2238        fi
2239  else  else
2240      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2241          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2242          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2243      else      else
2244          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2245          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2246          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2247          RETVAL=$?          RETVAL=$?
2248          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2249              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2250              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2251              exit 1              exit 1
2252          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         expand_pkg_groups  
         echo "    after group expansion packages are:  $PACKAGES"  
2253      fi      fi
2254  fi  fi
2255    for i in $pkg_list ; do
2256        PACKAGES="$PACKAGES $i"
2257    done
2258    echo     "    before group expansion packages are:$PACKAGES"
2259    if test "x${PKG_GROUPS}" != x ; then
2260        RET=1
2261        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2262        echo "    after group expansion packages are: $PACKAGES"
2263    fi
2264    
2265  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2266    echo "" > $TMP.pack
2267    for i in $PACKAGES ; do
2268        echo $i >> $TMP.pack
2269    done
2270    for i in `grep  "-" $TMP.pack` ; do
2271        j=`echo $i | sed 's/[-]//'`
2272        DISABLE="$DISABLE $j"
2273    done
2274  pack=  pack=
2275  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2276      addit="t"      addit="t"
# Line 805  for p in $PACKAGES ; do Line 2282  for p in $PACKAGES ; do
2282      if test "x$addit" = xt ; then      if test "x$addit" = xt ; then
2283          pack="$pack $p"          pack="$pack $p"
2284      fi      fi
2285  done  done
2286  PACKAGES="$pack"  PACKAGES="$pack"
2287  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2288  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2289  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2290  for i in $PACKAGES ; do  # Test if each explicitly referenced package exists
2291      if test ! -d "$ROOTDIR/pkg/$i" ; then  for i in $PACKAGES ; do
2292          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      j=`echo $i | sed 's/[-+]//'`
2293          exit 1      if test ! -d "$ROOTDIR/pkg/$j" ; then
2294            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2295            exit 1
2296        fi
2297        echo $i >> $TMP.pack
2298    done
2299    PACKAGES=
2300    for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2301        PACKAGES="$PACKAGES $i"
2302    done
2303    rm -f $TMP.pack
2304    echo "    packages are: $PACKAGES"
2305    
2306    #  Check for package MNC: if NetCDF is available, then build the MNC
2307    #  template files ; otherwise, delete mnc from the list of packages.
2308    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2309    mnc_in=$?
2310    if test "x$HAVE_NETCDF" != xt ; then
2311        if test "x$mnc_in" = x0 ; then
2312            cat <<EOF
2313    *********************************************************************
2314    WARNING: the "mnc" package was enabled but tests failed to compile
2315      NetCDF applications.  Please check that:
2316    
2317      1) NetCDF is correctly installed for this compiler and
2318      2) the LIBS variable (within the "optfile") specifies the correct
2319           NetCDF library to link against.
2320    
2321      Due to this failure, the "mnc" package is now DISABLED.
2322    *********************************************************************
2323    EOF
2324            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2325            DISABLE="$DISABLE mnc"
2326        else
2327        #  this prevent to add mnc (due to pdepend rules) if not available
2328            DISABLE="$DISABLE mnc"
2329        fi
2330    else
2331        # we have NetCDF, we try to build MNC template files
2332        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2333        RETVAL=$?
2334        if test "x${RETVAL}" = x0 ; then
2335            rm -f make_mnc.errors
2336        else
2337            echo "Error: problem encountered while building source files in pkg/mnc:"
2338            cat make_mnc.errors 1>&2
2339            if test "x$mnc_in" = x0 ; then
2340                exit 1
2341            else
2342                DISABLE="$DISABLE mnc"
2343            fi
2344        fi
2345    fi
2346    
2347    #  Check for package PROFILES: if NetCDF is not available,
2348    #  then delete profiles from the list of available packages.
2349    if test "x$HAVE_NETCDF" != xt ; then
2350        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2351        RETVAL=$?
2352        if test "x$RETVAL" = x0 ; then
2353            cat <<EOF
2354    *********************************************************************
2355    WARNING: the "profiles" package was enabled but tests failed to
2356      compile NetCDF applications.  Please check that:
2357    
2358      1) NetCDF is correctly installed for this compiler and
2359      2) the LIBS variable (within the "optfile") specifies the correct
2360           NetCDF library to link against.
2361    
2362      Due to this failure, the "profiles" package is now DISABLED.
2363    *********************************************************************
2364    EOF
2365            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2366            DISABLE="$DISABLE profiles"
2367        else
2368        #  this prevent to add profiles (due to pdepend rules) if not available
2369            DISABLE="$DISABLE profiles"
2370        fi
2371    fi
2372    
2373    #  Make sure the openad package is enabled if using OpenAD
2374    if test "x$OPENAD" != x ; then
2375        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2376        RETVAL=$?
2377        if test "x$RETVAL" != x0 ; then
2378            cat <<EOF
2379    
2380    *********************************************************************
2381    ERROR: when generating an adjoint with OpenAD, the openad package
2382      must be enabled.  Please add it to packages.conf.
2383    *********************************************************************
2384    
2385    EOF
2386            exit 1
2387      fi      fi
2388      echo $i >> ./.tmp_pack  fi
 done  
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
 PACKAGES=  
 for i in $pack ; do  
     PACKAGES="$PACKAGES $i"  
 done  
 echo "    packages are:  $PACKAGES"  
2389    
2390  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2391  ck=    echo "  applying package dependency rules"
2392  while test "x$ck" != xtt ; do    ck=
2393      while test "x$ck" != xtt ; do
2394      i=0      i=0
2395      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2396      rtot=$nname      rtot=$nname
2397      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2398    
2399          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2400          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 843  while test "x$ck" != xtt ; do Line 2406  while test "x$ck" != xtt ; do
2406                  pin="t"                  pin="t"
2407              fi              fi
2408          done          done
2409            #  or in the current $STANDARDDIRS list?
2410            for p in $STANDARDDIRS ; do
2411                if test "x$p" = "x$pname" ; then pin="t" ; fi
2412            done
2413    
2414          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2415          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 865  while test "x$ck" != xtt ; do Line 2432  while test "x$ck" != xtt ; do
2432    
2433          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2434          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2435                #echo "   " $pname ": need to add :" $dname
2436              in_dis="f"              in_dis="f"
2437              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2438                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 885  while test "x$ck" != xtt ; do Line 2453  while test "x$ck" != xtt ; do
2453          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2454          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2455              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2456              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2457              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2458              exit 1              exit 1
2459          fi          fi
2460          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2461            #i=$(( $i + 1 ))
2462      done      done
2463      ck=$ck"t"      ck=$ck"t"
2464  done    done
2465  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2466    fi
2467  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2468      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2469      if test -d $adr ; then      if test -d $adr ; then
# Line 908  for i in $PACKAGES ; do Line 2478  for i in $PACKAGES ; do
2478      fi      fi
2479  done  done
2480    
 #  This is compatible with the old genmake.  The "DISABLE_*" flags  
 #  need to be replaced by the "ALLOW_*" flags set below.  
 #  
 # echo -n "  Setting package-specific CPP flags:  "  
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
2481  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2482  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2483  cat <<EOF >$PACKAGES_DOT_H".tmp"  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2484  C=== GENMAKE v2 ===  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 C  The following defines have been set by GENMAKE, so please do not  
 C  edit anything below these comments.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 #ifndef PACKAGES_H  
 #define PACKAGES_H  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2485  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2486  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2487  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2488  all_pack=  all_pack=
2489    DISABLED_PACKAGES=
2490  for n in $names ; do  for n in $names ; do
2491      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2492          has_pack="f"          has_pack="f"
# Line 957  for n in $names ; do Line 2497  for n in $names ; do
2497              fi              fi
2498          done          done
2499          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2500              undef=`echo "ALLOW_$n" | $AWK '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2501              echo "#undef $undef" >> $PACKAGES_DOT_H".tmp"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
 #           DEFINES="$DEFINES -U$undef"  
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2502          fi          fi
2503      fi      fi
2504  done  done
2505  cat <<EOF >>$PACKAGES_DOT_H".tmp"  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2506  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2507      def=`echo "ALLOW_$i" | $AWK '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2508      echo "#define $def" >> $PACKAGES_DOT_H".tmp"      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2509  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2510    
2511  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2512      case $i in      case $i in
2513          aim_v23)          aim_v23)
2514              echo "#define   ALLOW_AIM" >> $PACKAGES_DOT_H".tmp"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2515              DEFINES="$DEFINES -DALLOW_AIM"              echo "Warning: ALLOW_AIM is set to enable aim_v23."
             echo "Warning: ALLOW_AIM is set to enable aim_v23. This is REALLY ugly Jean-Michel :-)"  
2516              ;;              ;;
2517      esac      esac
2518  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2519    
2520  done  done
 cat <<EOF >>$PACKAGES_DOT_H".tmp"  
   
 #endif /* PACKAGES_H */  
 EOF  
   
 if test ! -f $PACKAGES_DOT_H ; then  
     mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
 else  
     cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     RETVAL=$?  
     if test "x$RETVAL" = x0 ; then  
         rm -f $PACKAGES_DOT_H".tmp"  
     else  
         mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"  
         mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H  
     fi  
 fi  
2521    
2522  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2523  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2524  if test "x$STANDARDDIRS" = x ; then  if test "x$STANDARDDIRS" != x ; then
2525      STANDARDDIRS="eesupp model"      for d in $STANDARDDIRS ; do
2526            adr="$ROOTDIR/$d/src"
2527            if test ! -d $adr ; then
2528                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2529                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2530                exit 1
2531            else
2532                SOURCEDIRS="$SOURCEDIRS $adr"
2533            fi
2534            adr="$ROOTDIR/$d/inc"
2535            if test ! -d $adr ; then
2536                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2537                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2538                exit 1
2539            else
2540                INCLUDEDIRS="$INCLUDEDIRS $adr"
2541            fi
2542        done
2543  fi  fi
 for d in $STANDARDDIRS ; do  
     adr="$ROOTDIR/$d/src"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         SOURCEDIRS="$SOURCEDIRS $adr"  
     fi  
     adr="$ROOTDIR/$d/inc"  
     if test ! -d $adr ; then  
         echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""  
         echo "  is correct and that you correctly specified the STANDARDDIRS option"  
         exit 1  
     else  
         INCLUDEDIRS="$INCLUDEDIRS $adr"  
     fi  
 done  
2544    
2545  echo " Searching for CPP_OPTIONS.h in order to warn about the presence"  echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2546  echo " of \"#define ALLOW_PKGNAME\"-type statements:"  echo "    of \"#define \"-type statements that are no longer allowed:"
2547  CPP_OPTIONS=  CPP_OPTIONS=
2548    CPP_EEOPTIONS=
2549  spaths=". $INCLUDEDIRS"  spaths=". $INCLUDEDIRS"
2550    names=`ls -1 "$ROOTDIR/pkg"`
2551  for i in $spaths ; do  for i in $spaths ; do
2552      try="$i/CPP_OPTIONS.h"      try="$i/CPP_OPTIONS.h"
2553      #  echo -n "    trying $try : "      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
     if test -f $try -a -r $try ; then  
2554          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2555          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2556          break          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2557            for n in $names ; do
2558                test_for_package_in_cpp_options $CPP_OPTIONS $n
2559            done
2560        fi
2561        try="$i/CPP_EEOPTIONS.h"
2562        if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2563            echo "    found CPP_EEOPTIONS=\"$try\""
2564            # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2565    #**** not yet enabled ****
2566    #        test_for_mpi_in_cpp_eeoptions $try
2567    #**** not yet enabled ****
2568            CPP_EEOPTIONS="$try"
2569      fi      fi
2570  done  done
2571  if test "x$CPP_OPTIONS" = x ; then  if test "x$CPP_OPTIONS" = x ; then
2572      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"      echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2573      exit 1      exit 1
2574  fi  fi
 # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h  
 names=`ls -1 "$ROOTDIR/pkg"`  
 for n in $names ; do  
     test_for_package_in_cpp_options $CPP_OPTIONS $n  
 done  
   
2575    
2576  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2577  #  compiler.  #  compiler.
2578  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2579      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2580  fi  fi
2581  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2582    touch $TMP.adSrcFiles
2583  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2584      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2585      for j in $list_files ; do      for j in $list_files ; do
2586          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2587      done      done
2588  done  done
2589    if test ! "x"$FS = "x.f" ; then
2590  cat <<EOF > adjoint_sed      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2591  s/call adopen(/call adopen ( mythid,\\      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2592       \&           /g  fi
 s/call adclose(/call adclose( mythid,\\  
      \&           /g  
 s/call adread(/call adread ( mythid,\\  
      \&           /g  
 s/call adwrite(/call adwrite( mythid,\\  
      \&           /g  
   
 EOF  
2593    
2594  echo  echo
2595  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2596  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2597  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2598      if ! test -d $i ; then      if test ! -d $i ; then
 #       INCLUDES="$INCLUDES -I$i"  
 #   else  
2599          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2600      fi      fi
2601  done  done
2602    
2603    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2604        if test ! "x$MPIINCLUDEDIR" = x ; then
2605            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2606            #   checking for additional included headers (in case of chain of included
2607            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2608            mpi_headers_do_local_copy
2609        fi
2610    fi
2611    
2612  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2613  rm -rf .links.tmp  rm -rf $TMP.links
2614  mkdir .links.tmp  mkdir $TMP.links
2615  echo "# This section creates symbolic links" > srclinks.tmp  touch $TMP.links/foo
2616  echo "" >> srclinks.tmp  if test ! -r "$TMP.links/foo" ; then
2617  echo -n 'SRCFILES = '    > srclist.inc      echo
2618  echo -n 'CSRCFILES = '   > csrclist.inc      echo "ERROR : something is wrong with your directory permissions or"
2619  echo -n 'F90SRCFILES = ' > f90srclist.inc      echo "   your user file-creation mask (\"umask\") since creating a"
2620  echo -n 'HEADERFILES = ' > hlist.inc      echo "   sub-dir, touch-ing a file within it, and then reading it is"
2621  echo -n 'AD_FLOW_FILES = ' > ad_flow_files.inc      echo "   not working.  Please try setting your umask to something"
2622        echo "   sane such as:"
2623        echo
2624        echo "      umask 0002"
2625        echo
2626        echo "   and please verify that you have the proper permissions for"
2627        echo "   creating sub-directories and then reading files created"
2628        echo "   within them."
2629        echo
2630        exit 1
2631    fi
2632    rm -f $TMP.links/foo
2633    
2634    if test "x$OPENAD" != x ; then
2635        OAD_DONT_COMPILE="/dev/null"
2636        OAD_DONT_TRANSFORM="/dev/null"
2637        OAD_KEEP_ORIGINAL="/dev/null"
2638        OAD_CB2M_FILES="/dev/null"
2639        OADTOOLS="$TOOLSDIR/OAD_support"
2640        echo "  looking for dontCompile file:  "
2641        for i in "." $MODS $OADTOOLS ; do
2642            if test -r $i"/dontCompile" ; then
2643                OAD_DONT_COMPILE=$i"/dontCompile"
2644                echo "     found $OAD_DONT_COMPILE"
2645                break
2646            fi
2647        done
2648        echo "  looking for dontTransform file:  "
2649        for i in "." $MODS $OADTOOLS ; do
2650            if test -r $i"/dontTransform" ; then
2651                OAD_DONT_TRANSFORM=$i"/dontTransform"
2652                echo "     found $OAD_DONT_TRANSFORM"
2653                break
2654            fi
2655        done
2656        echo "  looking for keepOriginal file:  "
2657        for i in "." $MODS $OADTOOLS ; do
2658            if test -r $i"/keepOriginal" ; then
2659                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2660                echo "     found $OAD_KEEP_ORIGINAL"
2661                break
2662            fi
2663        done
2664        echo "  looking for cb2mFiles:  "
2665        for i in "." $MODS $OADTOOLS ; do
2666            if test -r $i"/cb2mFiles" ; then
2667                OAD_CB2M_FILES=$i"/cb2mFiles"
2668                echo "     found $OAD_CB2M_FILES"
2669                break
2670            fi
2671        done
2672        echo "   OpenAD exceptions:  "
2673    fi
2674    
2675    echo "# This section creates symbolic links" > $TMP.srclinks
2676    echo "" >> $TMP.srclinks
2677    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2678    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2679    printf 'C_SRC_FILES = '   > $TMP.csrclist
2680    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2681    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2682    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2683  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2684  for d in $alldirs ; do  for d in $alldirs ; do
2685      deplist=      deplist=
2686      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2687      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2688        if test "x$OPENAD" != x ; then
2689            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2690        fi
2691      for sf in $sfiles ; do      for sf in $sfiles ; do
2692          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2693              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2694                  extn=`echo $sf | $AWK -F '.' '{print $NF}'`                  ignore_f=f
2695                  touch .links.tmp/$sf                  case $d/$sf in
2696                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2697                  case $extn in                          ignore_f=t
2698                      F)                          ;;
2699                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2700                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2701                            ;;
2702                      ./FC_NAMEMANGLE.h)
2703                            ignore_f=t
2704                            ;;
2705                      ./BUILD_INFO.h)
2706                            ignore_f=t
2707                            ;;
2708                      ./EMBEDDED_FILES.h)
2709                            ignore_f=t
2710                            ;;
2711                      *)
2712                            #  For the local directory *ONLY*,
2713                            #  ignore all soft-links
2714                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2715                                ignore_f=t
2716                            else
2717                                touch $TMP.links/$sf
2718                                deplist="$deplist $sf"
2719                            fi
2720                            ;;
2721                    esac
2722                    if test "x$ignore_f" = xf ; then
2723                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2724                        case $extn in
2725                          F)
2726                            echo    " \\"  >> $TMP.F77srclist
2727                            printf " $sf" >> $TMP.F77srclist
2728                            if test "x$OPENAD" = x ; then
2729                                basename=${sf%%.F}
2730                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2731                                if test -z "$isAD" ; then
2732                                    echo    " \\"  >> $TMP.nonADF77srclist
2733                                    printf " $sf" >> $TMP.nonADF77srclist
2734                                fi
2735                            else #- OpenAD case:
2736                                basename=${sf%%.F}
2737                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2738                                if test -z "$isAD" ; then
2739                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2740                                    if test -z "$toBeIgnored" ; then
2741                                        echo    " \\"  >> $TMP.nonADF77srclist
2742                                        printf " $sf" >> $TMP.nonADF77srclist
2743                                    else
2744                                        echo "    not to be compiled   :  $sf"
2745                                    fi
2746                                else # file is initially listed as an AD file we want to exclude it
2747                                     # or we want to retain the untransformed version
2748                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2749                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2750                                    if test -n "$notToBeTransformed"; then
2751                                        echo "    not to be transformed:  $sf"
2752                                    fi
2753                                    if test -n "$untransformedVersionToBeKept" ; then
2754                                        echo "    original to be kept  :  $sf"
2755                                    fi
2756                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2757                                        echo    " \\"  >> $TMP.nonADF77srclist
2758                                        printf " $sf" >> $TMP.nonADF77srclist
2759                                    fi
2760                                fi
2761                            fi
2762                          ;;                          ;;
2763                      F90)                      F90)
2764                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> $TMP.F90srclist
2765                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> $TMP.F90srclist
2766                          ;;                          ;;
2767                      c)                      c)
2768                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> $TMP.csrclist
2769                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> $TMP.csrclist
2770                          ;;                          ;;
2771                      h)                      h)
2772                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> $TMP.hsrclist
2773                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> $TMP.hsrclist
2774                          ;;                          ;;
2775                      flow)                      flow)
2776                          echo    " \\"  >> ad_flow_files.inc                          echo    " \\"  >> $TMP.ad_flow_files
2777                          echo -n " $sf" >> ad_flow_files.inc                          printf " $sf" >> $TMP.ad_flow_files
2778                          ;;                          ;;
2779                  esac                     esac
2780                    fi
2781              fi              fi
2782          fi          fi
2783      done      done
2784      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2785          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2786          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2787          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2788          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2789    # We need to make sure that the link isn't already there.
2790    # This may happen when make thinks that a header file has to be "remade"
2791    # because a module it depends on has changed.  In this case we do nothing.
2792            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2793          fi
2794      fi      fi
2795  done  done
2796  rm -rf .links.tmp  rm -rf $TMP.links
2797  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2798  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2799  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2800  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2801  echo "" >> ad_flow_files.inc  echo "" >> $TMP.hsrclist
2802    echo "" >> $TMP.ad_flow_files
2803    
2804    CMDLINE=$0
2805    for xx in "$@" ; do nw=`echo $xx | wc -w`
2806        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2807                            else CMDLINE="$CMDLINE '$xx'" ; fi
2808    done
2809    
2810  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2811      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2812  fi  fi
2813  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2814  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 1169  echo "#    $MACHINE" >> $MAKEFILE Line 2816  echo "#    $MACHINE" >> $MAKEFILE
2816  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2817  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2818  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2819  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2820  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2821  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2822    
2823    EXE_AD=$EXECUTABLE"_ad"
2824    EXE_FTL=$EXECUTABLE"_ftl"
2825    EXE_SVD=$EXECUTABLE"_svd"
2826    
2827  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2828  #  #
2829    # OPTFILE="$OPTFILE"
2830    #
2831  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2832  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2833  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 1184  cat >>$MAKEFILE <<EOF Line 2838  cat >>$MAKEFILE <<EOF
2838  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2839  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2840  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2841  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2842  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2843  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 1193  cat >>$MAKEFILE <<EOF Line 2845  cat >>$MAKEFILE <<EOF
2845  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2846    
2847  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2848  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2849  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2850  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2851  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2852  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2853  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2854    OADTOOLS    = ${OADTOOLS}
2855    
2856  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2857  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2858    EXE_AD      = ${EXE_AD}
2859    EXE_FTL     = ${EXE_FTL}
2860    EXE_SVD     = ${EXE_SVD}
2861    
2862    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2863    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2864    
2865    # These files are created by Makefile
2866    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2867  EOF  EOF
2868    
2869  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2870        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2871    else
2872        echo "EMBEDDED_FILES = " >>$MAKEFILE
2873    fi
2874    
2875    # extract default cpp search path so we can pass it to makedepend
2876    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2877    
2878  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2879  # Unix ln (link)  # Unix ln (link)
2880  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2881  # Dependency generator  # Dependency generator
2882  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2883  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 1220  KPP = ${KPP} Line 2886  KPP = ${KPP}
2886  FC = ${FC}  FC = ${FC}
2887  # Fortran compiler  # Fortran compiler
2888  F90C = ${F90C}  F90C = ${F90C}
2889    # C compiler
2890    CC = ${CC}
2891  # Link editor  # Link editor
2892  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2893    
2894  # Defines for CPP  # Defines for CPP
2895  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2896  # Includes for CPP  # Includes for CPP
2897  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2898    # default CPP includes for makedepend
2899    CPPINCLUDES = ${CPPINCLUDES}
2900  # Flags for KPP  # Flags for KPP
2901  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2902  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2903  # Optim./debug for FC  # Optim./debug for FC
2904  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2905  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2906  # Optim./debug for FC  # Optim./debug for FC
2907  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2908  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2909    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2910  # Flags for CC  # Flags for CC
2911  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2912  # Files that should not be optimized  # Files that should not be optimized
2913  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2914  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2915  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2916  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2917  # Name of the Mekfile  # Name of the makefile
2918  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2919    # Name of the make program
2920    MAKE = ${MAKE}
2921    
2922  EOF  EOF
2923    
2924  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2925  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2926  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2927  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2928  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2929  echo               >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
 echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  
 echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  
 echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2930    
2931  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2932  rm -f ad_flow_files.inc  
2933    echo >> $MAKEFILE
2934    
2935    # add definitions for preprocessed sources
2936    # and note that not all systems allow case sensitive extensions
2937    # hence the $FS and $FS90 here.
2938    # for fixed format f90 files we use ff90 or FF90 resp
2939    # but these are not expected to be the original source files
2940    
2941    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2942    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2943    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2944    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2945    echo >> $MAKEFILE
2946    echo '.SUFFIXES:' >> $MAKEFILE
2947    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2948    
2949  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2950    
2951  .SUFFIXES:  all: fwd_exe_target
2952  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2953            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2954            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2955            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2956            @-rm -f ad_config.template
2957            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2958    
2959  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2960  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2961          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2962    
2963  depend:  depend:
2964          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2965          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2966          ${TOOLSDIR}/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2967            -rm -f makedepend.out
2968    
2969    lib: libmitgcmuv.a
2970    
2971    libmitgcmuv.a: \$(OBJFILES)
2972            ar rcv libmitgcmuv.a \$(OBJFILES)
2973            ar d   libmitgcmuv.a main.o
2974    
2975  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  obj: \$(OBJFILES)
2976    
2977  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2978    
2979  output.txt: \$(EXECUTABLE)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
         @printf 'running ... '  
         @\$(EXECUTABLE) > \$@  
2980    
2981    # remove most of the files that "make" generates
2982  clean:  clean:
2983          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2984            -rm -rf *.o
2985            -rm -rf *.$FS *.flowdir
2986            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2987    
2988    # remove most of the files that "make" and "make depend" generate
2989  Clean:  Clean:
2990          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2991          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2992          -rm -f Makefile.bak genmake_state genmake_optfile make.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2993            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2994    
2995    # remove also the executable, files that "genmake2" generates (except Makefile)
2996    #         and output from a run (plus log files from testreport)
2997  CLEAN:  CLEAN:
2998          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2999            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
3000            -rm -f $LOGFILE genmake_state genmake_*optfile
3001            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3002            -rm -rf mpi_headers mnc_test_*
3003          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3004          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3005          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3006          -rm -f \$(EXECUTABLE) output.txt          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3007            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3008            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3009            -rm -f oad_cp.[0-9][0-9][0-9].?????
3010    
 Makefile: makefile  
3011  makefile:  makefile:
3012          ${0} $@          $THIS_SCRIPT $G2ARGS
3013  cleanlinks:  cleanlinks:
3014          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3015    
3016  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
3017  .F.f:  ${PACKAGES_DOT_H}:
3018          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
3019  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3020    AD_CONFIG.h:
3021            @echo Creating \$@ ...
3022            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3023    FC_NAMEMANGLE.h:
3024            @echo Creating \$@ ...
3025            echo "$FC_NAMEMANGLE" > \$@
3026    
3027    BUILD_INFO.h:
3028            @echo Creating \$@ ...
3029    EOF
3030    
3031    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3032    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3033    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3034    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3035    
3036    if test "x$EMBED_SRC" = xt ; then
3037        cat >>$MAKEFILE <<EOF
3038    
3039    decode_files.o : EMBEDDED_FILES.h
3040    
3041    ##  \$(F77_PP_SRC_FILES)
3042    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3043            @echo Creating \$@ ...
3044            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3045            -rm -f all_fF.tar.gz
3046            -gzip all_fF.tar
3047    
3048    EMBEDDED_FILES.h : all_fF.tar.gz
3049            @echo Creating \$@ ...
3050            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3051    
3052    EOF
3053    fi
3054    
3055    cat >>$MAKEFILE <<EOF
3056    
3057    # The normal chain of rules is (  .F - .$FS - .o  )
3058    
3059    ## This nullifies any default implicit rules concerning these two file types:
3060    ## %.o : %.F
3061    
3062    # C preprocessing and replacing the _d in constants:
3063    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3064    
3065    .F.$FS:
3066            \$(CPPCMD)  > \$@
3067    .$FS.o:
3068          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3069  .F90.f90:  .F.o:
3070          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3071  .f90.o:  .F90.$FS90:
3072            \$(CPPCMD)  > \$@
3073    .FF90.f$FS90:
3074            \$(CPPCMD)  > \$@
3075    .$FS90.o:
3076          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3077    .f$FS90.o:
3078            cp \$< \$(basename  \$<).f90
3079            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3080  .c.o:  .c.o:
3081          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3082    .flow.flowdir:
3083            \$(CPPCMD) > \$@
3084    
3085  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3086  .F.p:  .F.p:
3087          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3088  .p.f:  .p.$FS:
3089          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3090    
3091    EOF
3092    
3093  #=========================================  #=========================================
3094  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3095    #===  for TAMC/TAF  ======================
3096    
3097    if test "x$OPENAD" = x ; then
3098    
3099    cat >>$MAKEFILE <<EOF
3100    
3101  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3102  TAF            = ${TAF}  TAF            = ${TAF}
3103    
3104  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3105  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3106    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3107    
3108  EOF  EOF
3109    
# Line 1335  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3112  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3112  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3113  for i in $ad_vars ; do  for i in $ad_vars ; do
3114      name=$i      name=$i
3115      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3116      eval $t1      eval $t1
3117      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3118      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3119  done  done
3120    
3121  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3122  echo >> $MAKEFILE  echo >> $MAKEFILE
3123  echo -n "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3124  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3125  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3126      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3127      echo -n " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3128  done  done
3129  echo >> $MAKEFILE  echo >> $MAKEFILE
3130    rm -f $TMP.adSrcFiles
3131    
3132    if test $CAT_SRC_FOR_TAF = 0 ; then
3133  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3134    
3135  ad_input_code.f: \$(F77FILES)  # ... Utilities ...
3136          @make \$(AD_FLOW_FILES)  remove_comments:
3137          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.f          sed -i.bak -f \$(TOOLSDIR)/remove_comments_sed \$(AD_FILES)
3138            @-rm -f \$(AD_FILES:.$FS=.$FS.bak)
3139    adj_sed:
3140            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_ad.$FS)
3141            @-rm -f \$(AD_FILES:.$FS=_ad.$FS.bak)
3142    ftl_sed:
3143            sed -i.bak -f \$(TOOLSDIR)/adjoint_sed \$(AD_FILES:.$FS=_tl.$FS)
3144            @-rm -f \$(AD_FILES:.$FS=_tl.$FS.bak)
3145    adobjfiles: \$(AD_FILES:.$FS=_ad.o)
3146    ftlobjfiles: \$(AD_FILES:.$FS=_tl.o)
3147    EOF
3148    fi
3149    
3150    cat >>$MAKEFILE <<EOF
3151    
3152  # ... AD ...  # ... AD ...
3153  ad_taf_output.f: ad_input_code.f  adall: ad_exe_target
3154          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  adtaf: ad_taf_output.$FS
3155          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_taf_output.f  adtamc: ad_tamc_output.$FS
3156    
3157  ad_taf: ad_taf_output.o \$(OBJFILES)  ad_exe_target:
3158          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3159            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3160  ad_tamc_output.f: ad_input_code.f          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3161          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f          @-rm -f ad_config.template
3162          cat ad_input_code_ad.f | sed -f adjoint_sed > ad_tamc_output.f          \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3163    
3164    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3165            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3166            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3167            @-rm -f ad_config.template
3168            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3169            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3170            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3171    
3172    adtafonly:
3173            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3174            ls -l ad_input_code_ad.$FS
3175            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3176    
3177    EOF
3178    
3179    if test $CAT_SRC_FOR_TAF = 1 ; then
3180    cat >>$MAKEFILE <<EOF
3181    # ... send 1 file to TAF ...
3182    ad_taf_output.$FS: ad_input_code.$FS
3183            @-rm -f ad_input_code_ad.$FS ; echo ''
3184            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3185            ls -l ad_input_code_ad.$FS
3186            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3187    
3188    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3189            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3190    
3191    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3192    
3193    EOF
3194    
3195    else
3196    cat >>$MAKEFILE <<EOF
3197    # ... send multiple files to TAF ...
3198    ad_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3199            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3200            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3201            @-rm -f ad_config.template
3202            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3203            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3204            @-rm -f \$(AD_FILES:.$FS=_ad.$FS) \$(AD_FILES:.$FS=_ad.o); echo ''
3205            \$(MAKE) -f \$(MAKEFILE) remove_comments
3206            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) \$(FLOWFILES) \$(AD_FILES)
3207            \$(MAKE) -f \$(MAKEFILE) adj_sed
3208            \$(MAKE) -f \$(MAKEFILE) adobjfiles
3209            cat \$(AD_FILES:.$FS=_ad.$FS) > ad_taf_output.$FS
3210    
3211    \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3212            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3213    
3214    adobj: \$(AD_FILES:.$FS=_ad.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3215    
3216    EOF
3217    fi
3218    
3219    cat >>$MAKEFILE <<EOF
3220    adonlyfwd:
3221            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3222    
3223    adtrick:
3224            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3225    
3226    ad_tamc_output.$FS: ad_input_code.$FS
3227            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3228            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3229    
3230  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3231          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3232    
3233    # ... FTL ...
3234    ftlall: ftl_exe_target
3235    ftltaf: ftl_taf_output.$FS
3236    ftltamc: ftl_tamc_output.$FS
3237    
3238    ftl_exe_target:
3239            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3240            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3241            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3242            @-rm -f ad_config.template
3243            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3244    
3245    ftl_input_code.$FS: \$(AD_FILES)
3246            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3247            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3248            @-rm -f ad_config.template
3249            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3250            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3251            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3252    
3253    ftltafonly:
3254            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3255            ls -l ftl_input_code_tl.$FS
3256            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3257    
3258    EOF
3259    
3260    if test $CAT_SRC_FOR_TAF = 1 ; then
3261    cat >>$MAKEFILE <<EOF
3262    # ... send 1 file to TAF ...
3263    ftl_taf_output.$FS: ftl_input_code.$FS
3264            @-rm -f ftl_input_code_tl.$FS ; echo ''
3265            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3266            ls -l ftl_input_code_tl.$FS
3267            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3268    
3269    \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3270            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3271    
3272    EOF
3273    
3274  # ... FLT ...  else
3275  flt_taf_output.f: ad_input_code.f  cat >>$MAKEFILE <<EOF
3276          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f  # ... send multiple files to TAF ...
3277          cat ad_input_code_ad.f | sed -f adjoint_sed > flt_taf_output.f  ftl_taf_output.$FS: \$(AD_FLOW_FILES) \$(AD_FILES)
3278            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3279            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3280            @-rm -f ad_config.template
3281            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3282            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3283            @-rm -f \$(AD_FILES:.$FS=_tl.$FS) \$(AD_FILES:.$FS=_tl.o); echo ''
3284            \$(MAKE) -f \$(MAKEFILE) remove_comments
3285            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) \$(AD_FLOW_FILES) \$(AD_FILES)
3286            \$(MAKE) -f \$(MAKEFILE) ftl_sed
3287            \$(MAKE) -f \$(MAKEFILE) ftlobjfiles
3288            cat \$(AD_FILES:.$FS=_tl.$FS) > ftl_taf_output.$FS
3289    
3290  flt_taf: flt_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.$FS \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3291          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(AD_FILES:.$FS=_tl.o) \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3292    
3293  flt_tamc_output.f: ad_input_code.f  EOF
3294          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.f  fi
         cat ad_input_code_ad.f | sed -f adjoint_sed > flt_tamc_output.f  
3295    
3296  flt_tamc: flt_tamc_output.o \$(OBJFILES)  cat >>$MAKEFILE <<EOF
3297          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) flt_tamc_output.o \$(LIBS)  ftl_tamc_output.$FS: ftl_input_code.$FS
3298            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3299            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3300    
3301    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3302            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3303    
3304  # ... SVD ...  # ... SVD ...
3305  svd_taf_output.f: ad_input_code.f  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3306          \$(TAF) \$(SVD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.f          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3307          cat ad_input_code_ad.f | sed -f adjoint_sed > svd_taf_output.f          @echo "--->>> Do make svdall afterwards to compile. <<<---"
3308    svdall: svd_touch svd_taf
3309    
3310    svd_taf: \$(OBJFILES)
3311            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3312    
3313            @echo "--->>> Only COMPILE svd code! <<<---"
3314            @echo "--->>> Assumes you previously <<<---"
3315            @echo "--->>> did make svdtaf        <<<---"
3316    
3317    svd_touch:
3318            @echo "--->>> Only COMPILE svd code! <<<---"
3319            @echo "--->>> Assumes you previously <<<---"
3320            @echo "--->>> did make svdtaf        <<<---"
3321            touch ad_taf_output.$FS ftl_taf_output.$FS
3322            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3323            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3324            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3325            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3326            @-rm -f ad_config.template
3327    
3328  svd_taf: svd_taf_output.o \$(OBJFILES)  EOF
3329          \$(LINK) -o ${EXECUTABLE} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) svd_taf_output.o \$(LIBS)  
3330    fi
3331    
3332    #===  for OpenAD  ========================
3333    
3334  #=========================================  if test "x$OPENAD" != x ; then
3335    
3336    # ============ begin OpenAD specific section ==============
3337    
3338    cat >>$MAKEFILE <<EOF
3339    # ... OpenAD ...
3340    
3341    # all the source files linked from the various locations:
3342    ALL_LINKED_FILES= \
3343    \$(F77_SRC_FILES) \
3344    \$(C_SRC_FILES) \
3345    \$(H_SRC_FILES) \
3346    \$(F90_SRC_FILES) \
3347    \$(SPECIAL_FILES)
3348    
3349    ifndef OPENADROOT
3350      \$(error "Error:  environment variable OPENADROOT not defined!")
3351    endif