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revision 1.211 by jmc, Tue Nov 2 22:45:07 2010 UTC revision 1.265 by jmc, Fri Apr 4 21:34:01 2014 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
26          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
27              Use "NAME" as the adoptfile.  By default, the file at
28              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
29              "tools/adjoint_options/adjoint_default" will be used.
30    
31        -nooptfile | --nooptfile
32          -optfile NAME | --optfile NAME | -of NAME | --of NAME
33          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
34              Use "NAME" as the optfile.  By default, an attempt will be
35              made to find an appropriate "standard" optfile in the
36              tools/build_options/ directory.
37    
38        -pdepend NAME | --pdepend NAME
39          -pdepend=NAME | --pdepend=NAME
40              Get package dependency information from "NAME".
41    
42        -pgroups NAME | --pgroups NAME
43          -pgroups=NAME | --pgroups=NAME
44              Get the package groups information from "NAME".
45    
46        -bash NAME
47              Explicitly specify the Bourne or BASH shell to use
48    
49        -make NAME | -m NAME
50          --make=NAME | -m=NAME
51              Use "NAME" for the MAKE program. The default is "make" but
52              many platforms, "gmake" is the preferred choice.
53    
54        -makefile NAME | -mf NAME
55          --makefile=NAME | -mf=NAME
56              Call the makefile "NAME".  The default is "Makefile".
57    
58        -makedepend NAME | -md NAME
59          --makedepend=NAME | -md=NAME
60              Use "NAME" for the MAKEDEPEND program.
61    
62        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
63          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
64              Specify the location of the MITgcm ROOTDIR as "NAME".
65              By default, genamke will try to find the location by
66              looking in parent directories (up to the 5th parent).
67    
68        -mods NAME | --mods NAME | -mo NAME | --mo NAME
69          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
70              Here, "NAME" specifies a list of directories that are
71              used for additional source code.  Files found in the
72              "mods list" are given preference over files of the same
73              name found elsewhere.
74    
75        -disable NAME | --disable NAME
76          -disable=NAME | --disable=NAME
77              Here "NAME" specifies a list of packages that we don't
78              want to use.  If this violates package dependencies,
79              genamke will exit with an error message.
80    
81        -enable NAME | --enable NAME
82          -enable=NAME | --enable=NAME
83              Here "NAME" specifies a list of packages that we wish
84              to specifically enable.  If this violates package
85              dependencies, genamke will exit with an error message.
86    
87        -standarddirs NAME | --standarddirs NAME
88          -standarddirs=NAME | --standarddirs=NAME
89              Here, "NAME" specifies a list of directories to be
90              used as the "standard" code.
91    
92        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
93          -fc=NAME | --fc=NAME
94              Use "NAME" as the fortran compiler.  By default, genmake
95              will search for a working compiler by trying a list of
96              "usual suspects" such as g77, f77, etc.
97    
98        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
99              Use "NAME" as the C compiler.  By default, genmake
100              will search for a working compiler by trying a list of
101              "usual suspects" such as gcc, c89, cc, etc.
102    
103        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
104              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
105              *only* works if CPP_EEOPTIONS.h allows this.
106    
107        -ignoretime | -ignore_time | --ignoretime | --ignore_time
108              Ignore all the "wall clock" routines entirely.  This will
109              not in any way hurt the model results -- it simply means
110              that the code that checks how long the model spends in
111              various routines will give junk values.
112    
113        -ts | --ts
114              Produce timing information per timestep
115        -papis | --papis
116              Produce summary MFlop/s (and IPC) with PAPI per timestep
117        -pcls | --pcls
118              Produce summary MFlop/s etc. with PCL per timestep
119        -foolad | --foolad
120              Fool the AD code generator
121        -papi | --papi
122              Performance analysis with PAPI
123        -pcl | --pcl
124              Performance analysis with PCL
125        -hpmt | --hpmt
126              Performance analysis with the HPM Toolkit
127    
128        -ieee | --ieee
129              use IEEE numerics.  Note that this option *only* works
130              if it is supported by the OPTFILE that is being used.
131        -devel | --devel
132              Add additional warning and debugging flags for development
133              (if supported by the OPTFILE); also switch to IEEE numerics.
134        -gsl | --gsl
135              Use GSL to control floating point rounding and precision
136    
137        -mpi | --mpi
138              Include MPI header files and link to MPI libraries
139        -mpi=PATH | --mpi=PATH
140              Include MPI header files and link to MPI libraries using MPI_ROOT
141              set to PATH. i.e. Include files from \$PATH/include, link to libraries
142              from \$PATH/lib and use binaries from \$PATH/bin.
143    
144        -omp | --omp
145              Activate OpenMP code + use Compiler option OMPFLAG
146        -omp=OMPFLAG | --omp=OMPFLAG
147              Activate OpenMP code + use Compiler option OMPFLAG
148    
149        -es | --es | -embed-source | --embed-source
150              Embed a tarball containing the full source code
151              (including the Makefile, etc.) used to build the
152              executable [off by default]
153    
154        -ds | --ds
155              Report genmake internal variables status (DUMPSTATE)
156              to file "genmake_state" (for debug purpose)
157    
158      While it is most often a single word, the "NAME" variables specified
159      above can in many cases be a space-delimited string such as:
160    
161        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
162        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
163        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
164    
165      which, depending upon your shell, may need to be single-quoted.
166    
167      For more detailed genmake documentation, please see:
168    
169        http://mitgcm.org/public/devel_HOWTO/
170    
171    EOF
172    
173        exit 1
174    }
175    
176  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
177  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
178  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
179      cpp_options=$1      cpp_options=$1
180      pkg=$2      pkg=$2
181      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
182      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
183      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
184      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
193  }  }
194    
195  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 197  test_for_mpi_in_cpp_eeoptions() {
197  test_for_string_in_file() {  test_for_string_in_file() {
198      file=$1      file=$1
199      strng=$2      strng=$2
200      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
201      RETVAL=$?      RETVAL=$?
202      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
203          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
204          grep -i "$strng" $file          grep -i "$strng" $file
205          exit 99          exit 99
206      fi      fi
207      return 0      return 0
# Line 57  test_for_string_in_file() { Line 212  test_for_string_in_file() {
212  expand_pkg_groups() {  expand_pkg_groups() {
213      new_packages=      new_packages=
214      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
215          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
216          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
217          matched=0          matched=0
218          for i in $PACKAGES ; do          for i in $PACKAGES ; do
219              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
220              RETVAL=$?              RETVAL=$?
221              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
222                  matched=1                  matched=1
# Line 73  expand_pkg_groups() { Line 228  expand_pkg_groups() {
228              fi              fi
229          done          done
230          PACKAGES=$new_packages          PACKAGES=$new_packages
231          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
232          return $matched          return $matched
233      else      else
234          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 136  EOF Line 291  EOF
291  .F.$tfs:  .F.$tfs:
292          $LN \$< \$@          $LN \$< \$@
293  EOF  EOF
294      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
295      RETVAL=$?      RETVAL=$?
296      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
297          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 144  EOF Line 299  EOF
299              FS90='fr9'              FS90='fr9'
300              check_for_broken_Ff              check_for_broken_Ff
301          else          else
302              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
303  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
304    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
305    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
306    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
307                echo ""
 EOF  
308              exit -1              exit -1
309              return              return
310          fi          fi
# Line 164  EOF Line 318  EOF
318      return      return
319  }  }
320    
   
321  look_for_makedepend()  {  look_for_makedepend()  {
322    
323      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 175  look_for_makedepend()  { Line 328  look_for_makedepend()  {
328      #      #
329      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
330      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
331      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
332      #      #
333      #  So the choices are, in order:      #  So the choices are, in order:
     #  
334      #    1) use the user-specified program      #    1) use the user-specified program
335      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
336      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
337      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
338        #             (faster, but can miss some dependencies)
339      #      #
340        echo >> $LOGFILE
341        echo "running: look_for_makedepend()" >> $LOGFILE
342        if test "x${MAKEDEPEND}" != x ; then
343            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
344            RETVAL=$?
345            if test x"$RETVAL" = x0 ; then
346                build_cyrus_makedepend
347                RETVAL=$?
348                if test "x$RETVAL" != x0 ; then
349                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
350                    MAKEDEPEND=
351                fi
352            else
353                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
354                RETVAL=$?
355                if test "x$RETVAL" = x0 ; then
356                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
357                fi
358                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
359            fi
360        fi
361      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
362          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
363          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
364          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
# Line 203  EOF Line 374  EOF
374        stop        stop
375        end        end
376  EOF  EOF
377          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
378          RV1=$?          RV1=$?
379            which makedepend > /dev/null 2>&1
380            RV2=$?
381            if test "x${RV2}" = x0 ; then
382                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
383                RV3=$? ; loc_msg='not working.'
384            else RV3=$RV2 ; loc_msg='not found.'
385            fi
386          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
387          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
388          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
389            if test "x${RV1}" = x0 ; then
390                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            elif test "x${RV3}" = x0 ; then
393                echo "    local tools/xmakedepend not working. Use system-default makedepend"
394              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396          else          else
397              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
398                echo -n "    Try to build cyrus-makedepend ..."
399              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
400              build_cyrus_makedepend              build_cyrus_makedepend
401              RETVAL=$?              RETVAL=$?
402              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
403                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
404                else
405                    echo "  Fails" ; echo "" >> $LOGFILE
406                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
407                    echo ""
408                    exit -1
409                    return
410              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
411          fi          fi
412      fi      fi
413  }  }
414    
   
415  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
416        echo >> $LOGFILE
417        echo "running: build_cyrus_makedepend()" >> $LOGFILE
418      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
419      (      (
420          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
421              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
422              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
423          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
424              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
425          fi          fi
# Line 248  build_cyrus_makedepend()  { Line 431  build_cyrus_makedepend()  {
431      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
432      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
433          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
434            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
435          return 0          return 0
436      else      else
437          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
438          return 1          return 1
439      fi      fi
440  }  }
441    
   
442  build_embed_encode()  build_embed_encode()
443  {  {
444      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
445      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
446          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
447              echo              echo
448              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
449              echo              echo
450              EMBED_SRC=f              EMBED_SRC=f
451              return 1              return 1
452          fi          fi
453          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
454          for ic in $clist ; do          for ic in $clist ; do
455              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 274  build_embed_encode() Line 457  build_embed_encode()
457              RETVAL=$?              RETVAL=$?
458              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
459                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
460                  return 0                  return 0
461              fi              fi
462          done          done
# Line 286  build_embed_encode() Line 468  build_embed_encode()
468          return 1          return 1
469      fi      fi
470      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
471  }  }
472    
473    #  look for possible C compilers
474  # Guess possible config options for this host  look_for_C_compilers() {
475  find_possible_configs()  {      echo >> $LOGFILE
476        echo "running: look_for_C_compilers()" >> $LOGFILE
477      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
478      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
   
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
479  #include <stdio.h>  #include <stdio.h>
480  int main(int argc, char **argv) {  int main(int argc, char **argv) {
481    printf("Hello!\n");    printf("Hello!\n");
482    return 0;    return 0;
483  }  }
484  EOF  EOF
485          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
486        p_CC=
487        for c in $tmp ; do
488            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
489            echo $COMM >> $LOGFILE
490            $COMM >> $LOGFILE 2>&1
491          RETVAL=$?          RETVAL=$?
492          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
493                echo " $c test successful" >> $LOGFILE
494              p_CC="$p_CC $c"              p_CC="$p_CC $c"
495          fi          fi
496      done      done
# Line 353  Error: No C compilers were found in your Line 506  Error: No C compilers were found in your
506  EOF  EOF
507          exit 1          exit 1
508      else      else
509          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
510          if test "x$CC" = x ; then          if test "x$CC" = x ; then
511              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
512              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
513          fi          fi
514      fi      fi
515        echo " --> set CC='$CC'" >> $LOGFILE
516    }
517    
518    # Guess possible config options for this host
519    find_possible_optfile()  {
520    
521        echo >> $LOGFILE
522        echo "running: find_possible_optfile()" >> $LOGFILE
523        tmp1=`uname`"_"`uname -m`
524        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
525        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
526        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
527        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
528        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
529        PLATFORM=$tmp3
530        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
531        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
532        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
533    
534      #================================================================      #================================================================
535      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
536      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
537        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
538      p_FC=      p_FC=
539      for c in $tmp ; do      rm -f ./genmake_hello.f
540          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
541        program hello        program hello
542        do i=1,3        do i=1,3
543          print *, 'hello world : ', i          print *, 'hello world : ', i
544        enddo        enddo
545        end        end
546  EOF  EOF
547          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
548            COMM="$f -o genmake_hello genmake_hello.f"
549            echo $COMM >> $LOGFILE
550            $COMM >> $LOGFILE 2>&1
551          RETVAL=$?          RETVAL=$?
552          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
553              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
554                p_FC="$p_FC $f"
555          fi          fi
556      done      done
557      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
558      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
559          cat 1>&2 <<EOF          cat 1>&2 <<EOF
560    
# Line 393  Error: No Fortran compilers were found i Line 567  Error: No Fortran compilers were found i
567  EOF  EOF
568          exit 1          exit 1
569      else      else
570          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
571      fi      fi
572    
573      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 403  EOF Line 576  EOF
576          for i in $p_FC ; do          for i in $p_FC ; do
577              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
578              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
579                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
580                  break                  break
581              fi              fi
582          done          done
# Line 412  EOF Line 585  EOF
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
587          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
588               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
589          fi          fi
590      fi      fi
591  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
592      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
593          cat 1>&2 <<EOF          cat 1>&2 <<EOF
594    
# Line 441  Error: No options file was found in:  $R Line 604  Error: No options file was found in:  $R
604  EOF  EOF
605          exit 1          exit 1
606      fi      fi
607    }
608    
609    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
610    #  checking for additional included headers (in case of chain of included header)
611    mpi_headers_do_local_copy() {
612    
613        dBug=0
614        rm -rf ./mpi_headers
615        if test -d $MPIINCLUDEDIR ; then
616    
617  #     # look for possible MPI libraries          #----- check for additional headers (chain of included headers)
618  #     mpi_libs=          echo -n '  Check MPI headers ... '
619  #     mpi_fort=`which mpif77 2>/dev/null`          listIni=$MPI_HEADER_FILES
620  #     RETVAL=$?          echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
621  #     if test "x${RETVAL}" = x0 ; then          outp=$?
622  #       cat >>test.f <<EOF          #- always check mpif.h (the only mpi-header included in standard MITgcm code)
623  #       PROGRAM HELLO          if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
624  #       DO 10, I=1,10          if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
625  #       PRINT *,'Hello World'  
626  #    10 CONTINUE          doCheck=1 ; list2copy='' ; list2check=$listIni
627  #       STOP          while test $doCheck = 1 ; do
628  #       END            newList=''
629  # EOF            for i in $list2check ; do
630  #       eval "$mpi_fort -showme test.f > out"              if test -f $MPIINCLUDEDIR/$i ; then
631  #       RETVAL=$?                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
632  #       if test "x${RETVAL}" = x0 ; then                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
633  #           a=`cat out`                if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
634  #           for i in $a ; do                for j in $newInc ; do
635  #               case $i in                  echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
636  #                   -*)                  outp=$?
637  #                       mpi_libs="$mpi_libs $i" ;;                  if test $outp != 0 ; then
638  #               esac                    if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
639  #           done                    newList="$newList $j"
640  #           echo "The MPI libs appear to be:"                  fi
641  #           echo "  "$mpi_libs                done
642  #       fi                if test $dBug = 1 ; then echo "" ; fi
643  #       rm -f test.f out              fi
644  #     fi            done
645              if test "x$newList" = x ; then doCheck=0
646              else list2check=$newList ; list2copy="$list2copy $newList"
647              fi
648            done
649            list2copy="$MPI_HEADER_FILES $list2copy"
650            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
651    
652            #----- create local mpi_headers dir if we have files to copy
653            mkListInc=`echo $list2copy | wc -w`
654            if test $mkListInc != 0 ; then
655              echo 'create local "./mpi_headers" dir'
656              mkdir -p ./mpi_headers
657              INCLUDES="-I./mpi_headers $INCLUDES"
658              mkListInc=1
659            fi
660            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
661    
662            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
663            for i in $list2copy ; do
664              if test -f $MPIINCLUDEDIR/$i ; then
665                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
666                if test $i = 'mpif.h' ; then
667                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
668                fi
669                if test $mkListInc = 2 ; then
670                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
671                fi
672                if test $mkListInc = 1 ; then
673                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
674                fi
675              fi
676            done
677        else
678            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
679            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
680    #       exit -1
681        fi
682  }  }
683    
684  #  Parse the package dependency information  #  Parse the package dependency information
# Line 488  get_pdepend_list()  { Line 696  get_pdepend_list()  {
696      fi      fi
697      . ./.pd_tmp      . ./.pd_tmp
698      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pgroups NAME | --pgroups NAME  
       -pgroups=NAME | --pgroups=NAME  
           Get the package groups information from "NAME".  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4  
           Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)  
           *only* works if CPP_EEOPTIONS.h allows this.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -omp | --omp  
           Activate OpenMP code + use Compiler option OMPFLAG  
     -omp=OMPFLAG | --omp=OMPFLAG  
           Activate OpenMP code + use Compiler option OMPFLAG  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/public/devel_HOWTO/  
   
 EOF  
   
     exit 1  
699  }  }
700    
701  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 654  get_fortran_c_namemangling()  { Line 703  get_fortran_c_namemangling()  {
703    
704      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
705      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
706          return 0          return 0
707      fi      fi
708      echo "running: get_fortran_c_namemangling()" >> $LOGFILE      echo " running: get_fortran_c_namemangling()" >> $LOGFILE
709    
710      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
711    
712      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
713  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
714  EOF  EOF
715      $MAKE genmake_test.o >> $LOGFILE 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
716        echo ' '$COMM >> $LOGFILE
717        $COMM >> $LOGFILE 2>&1
718      RETVAL=$?      RETVAL=$?
719      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
720          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
721          cat <<EOF>> $LOGFILE          cat <<EOF>> $LOGFILE
722    
723  WARNING: C test compile fails   WARNING: C test compile fails
724  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
725  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
726  EOF  EOF
727          return 1          return 1
728      fi      fi
# Line 681  EOF Line 732  EOF
732          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
733          cat <<EOF>> $LOGFILE          cat <<EOF>> $LOGFILE
734    
735  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
736  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
737  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
738  EOF  EOF
739          return 1          return 1
740      fi      fi
# Line 693  EOF Line 744  EOF
744        call tsub( string )        call tsub( string )
745        end        end
746  EOF  EOF
747      $FC $FFLAGS -c genmake_tcomp.$FS >> $LOGFILE 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
748        echo ' '$COMM >> $LOGFILE
749        $COMM >> $LOGFILE 2>&1
750      RETVAL=$?      RETVAL=$?
751      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
752          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
753          cat <<EOF>> $LOGFILE          cat <<EOF>> $LOGFILE
754    
755  WARNING: FORTRAN test compile fails -- please see '$LOGFILE'   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
756  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
757  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
758  EOF  EOF
759          return 1          return 1
760      fi      fi
# Line 711  EOF Line 764  EOF
764          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
765          cat <<EOF>> $LOGFILE          cat <<EOF>> $LOGFILE
766    
767  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
768  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
769  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
770  EOF  EOF
771          return 1          return 1
772      fi      fi
# Line 739  EOF Line 792  EOF
792    
793      #  cleanup the testing files      #  cleanup the testing files
794      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
795    
796        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
797    }
798    
799  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
800      echo >> $LOGFILE      echo >> $LOGFILE
# Line 781  EOF Line 835  EOF
835      RETVAL=$?      RETVAL=$?
836      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
837          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
838      fi      fi
839      rm -f genmake_tc*      rm -f genmake_tc*
840        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
841  }  }
842    
   
843  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
844      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
845          return          return
# Line 843  EOF Line 896  EOF
896      RETVAL=$?      RETVAL=$?
897      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
898          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
899      fi      fi
900      rm -f genmake_tc*      rm -f genmake_tc*
901        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
902  }  }
903    
   
904  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
905      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
906          return          return
907      fi      fi
# Line 891  EOF Line 939  EOF
939      RETVAL=$?      RETVAL=$?
940      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
941          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
942      fi      fi
943      rm -f genmake_tc*      rm -f genmake_tc*
944        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
945  }  }
946    
   
947  check_HAVE_STAT()  {  check_HAVE_STAT()  {
948      echo >> $LOGFILE      echo >> $LOGFILE
949      echo "running: check_HAVE_STAT()" >> $LOGFILE      echo "running: check_HAVE_STAT()" >> $LOGFILE
# Line 938  EOF Line 985  EOF
985      RETVAL=$?      RETVAL=$?
986      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
987          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
988      fi      fi
989      rm -f genmake_tc*      rm -f genmake_tc*
990        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
991  }  }
992    
   
993  check_netcdf_libs()  {  check_netcdf_libs()  {
994      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
995          return          return
# Line 954  check_netcdf_libs()  { Line 1000  check_netcdf_libs()  {
1000        program fgennc        program fgennc
1001  #include "netcdf.inc"  #include "netcdf.inc"
1002  EOF  EOF
1003      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1004          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1005      fi     #fi
1006      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1007        integer iret, ncid, xid        integer iret, ncid, xid
1008        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 1033  EOF Line 1079  EOF
1079          fi          fi
1080      fi      fi
1081      rm -f genmake_tnc*      rm -f genmake_tnc*
1082        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1083    }
1084    
1085    check_lapack_libs()  {
1086        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1087            return
1088        fi
1089        echo >> $LOGFILE
1090        echo "running: check_lapack_libs()" >> $LOGFILE
1091        cat <<EOF > genmake_tla.F
1092          program fgenla
1093          integer info
1094          integer ipiv( 2 )
1095          double precision ab( 4, 2 ), b( 2 )
1096          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1097          data b / 1., 1. /
1098          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1099          IF (info .NE. 0) write(*,*) 'Error:', info
1100          write(*,*) b
1101          end
1102    EOF
1103        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1104        cat genmake_tla.F >> genmake_tla.log
1105        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1106        RET_CPP=f
1107        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1108        echo "$COMM" >> genmake_tla.log
1109        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1110        if test "x$RET_CPP" = xf ; then
1111            echo "  WARNING: CPP failed to pre-process the lapack test." \
1112                >> genmake_tla.log
1113            echo "    Please check that \$INCLUDES is properly set." \
1114                >> genmake_tla.log
1115        fi
1116        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1117        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1118        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1119            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1120        RET_COMPILE=$?
1121        cat genmake_tla.log >> $LOGFILE
1122    
1123        # test program execution not always possible (see check_netcdf_libs)
1124        #
1125        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1126        #RETVAL=$?
1127        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1128    
1129        if test "x$RET_COMPILE" = x0 ; then
1130            HAVE_LAPACK=t
1131            echo "check_lapack: successful" >> $LOGFILE
1132        else
1133            # try again with "-llapack" added to the libs
1134            echo "==> try again with added '-llapack'" > genmake_tla.log
1135            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1136            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1137            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1138            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1139                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1140                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1141            RET_COMPILE=$?
1142            echo >> $LOGFILE
1143            cat genmake_tla.log >> $LOGFILE
1144            if test "x$RET_COMPILE" = x0 ; then
1145                LIBS="$LIBS -llapack"
1146                HAVE_LAPACK=t
1147                echo "check_lapack: successful" >> $LOGFILE
1148            else
1149            # try again with "-lf77blas -lcblas" added to the libs
1150                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1151                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1152                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1153                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1154                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1155                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1156                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1157                RET_COMPILE=$?
1158                echo >> $LOGFILE
1159                cat genmake_tla.log >> $LOGFILE
1160                if test "x$RET_COMPILE" = x0 ; then
1161                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1162                    HAVE_LAPACK=t
1163                    echo "check_lapack: successful" >> $LOGFILE
1164                else
1165                # try again with "-latlas" added to the libs
1166                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1167                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1168                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1169                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1170                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1171                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1172                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1173                    RET_COMPILE=$?
1174                    echo >> $LOGFILE
1175                    cat genmake_tla.log >> $LOGFILE
1176                    if test "x$RET_COMPILE" = x0 ; then
1177                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1178                        HAVE_LAPACK=t
1179                        echo "check_lapack: successful" >> $LOGFILE
1180                    fi
1181                fi
1182            fi
1183        fi
1184        rm -f genmake_tla*
1185        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1186  }  }
1187    
1188    check_HAVE_FLUSH()  {
1189        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1190            return
1191        fi
1192        echo >> $LOGFILE
1193        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1194        cat <<EOF > genmake_tflsh.$FS
1195          program fgenflsh
1196          integer iounit
1197          character*9 fname
1198          iounit = 26
1199          fname = 'tmp.tflsh'
1200          open(iounit,FILE=fname,STATUS='unknown')
1201          write(iounit,*) 'genmake_tflsh: hello'
1202          call flush(iounit)
1203          close(iounit)
1204          end
1205    EOF
1206        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1207        cat genmake_tflsh.$FS >> genmake_tflsh.log
1208        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1209    
1210        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1211        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1212        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1213            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1214        RET_COMPILE=$?
1215    
1216        if test "x$RET_COMPILE" = x0 ; then
1217            HAVE_FLUSH=t
1218            #cat genmake_tflsh.log >> $LOGFILE
1219            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1220        else
1221            HAVE_FLUSH=f
1222            cat genmake_tflsh.log >> $LOGFILE
1223        fi
1224        rm -f genmake_tflsh*
1225        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1226    }
1227    
1228  ###############################################################################  ###############################################################################
1229  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1068  FOPTIM= Line 1256  FOPTIM=
1256  FEXTRAFLAGS=  FEXTRAFLAGS=
1257  USE_EXTENDED_SRC=  USE_EXTENDED_SRC=
1258  EXTENDED_SRC_FLAG=  EXTENDED_SRC_FLAG=
1259    GET_FC_VERSION=
1260  CFLAGS=  CFLAGS=
1261  KFLAGS1=  KFLAGS1=
1262  KFLAGS2=  KFLAGS2=
# Line 1092  GSL= Line 1281  GSL=
1281  DEVEL=  DEVEL=
1282  HAVE_TEST_L=  HAVE_TEST_L=
1283    
1284    # comment this line out to enable lapack test
1285    SKIP_LAPACK_CHECK=t
1286    
1287  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1288  HAVE_SYSTEM=  HAVE_SYSTEM=
1289  HAVE_FDATE=  HAVE_FDATE=
# Line 1102  HAVE_STAT= Line 1294  HAVE_STAT=
1294  HAVE_NETCDF=  HAVE_NETCDF=
1295  HAVE_ETIME=  HAVE_ETIME=
1296  IGNORE_TIME=  IGNORE_TIME=
1297    HAVE_LAPACK=
1298    HAVE_FLUSH=
1299    
1300  MODS=  MODS=
1301  TOOLSDIR=  TOOLSDIR=
# Line 1109  SOURCEDIRS= Line 1303  SOURCEDIRS=
1303  INCLUDEDIRS=  INCLUDEDIRS=
1304  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1305    
1306    #- local config file
1307    gm_local="genmake_local"
1308    
1309  G2ARGS=  G2ARGS=
1310  BASH=  BASH=
1311  PWD=`pwd`  PWD=`pwd`
# Line 1124  MACHINE=`uname -a` Line 1321  MACHINE=`uname -a`
1321  EXECUTABLE=  EXECUTABLE=
1322  EXEHOOK=  EXEHOOK=
1323  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1324  IEEE=  IEEE=
1325  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1326      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1133  FS= Line 1329  FS=
1329  FS90=  FS90=
1330    
1331  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1332    OPENAD=
1333  AD_OPTFILE=  AD_OPTFILE=
1334  TAF=  TAF=
1335  AD_TAF_FLAGS=  AD_TAF_FLAGS=
# Line 1145  FTL_TAF_FLAGS= Line 1342  FTL_TAF_FLAGS=
1342  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1343  TAMC_EXTRA=  TAMC_EXTRA=
1344    
1345    DIVA=
1346    MPIINCLUDEDIR=
1347    MPI_HEADER_FILES=
1348    LOCAL_MPI_HEADERS=
1349    
1350  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1351  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS MAKEFILE MAKEDEPEND PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1352  gm_s2="FC IEEE USE_R4 TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1353    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1354    
1355  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1356  gm_s3="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1357  gm_s4="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1358  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1359  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1360  gm_s7="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1361    
1362  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1363  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1364  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1365  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1366    
1367  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1368  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1369    
1370  cat <<EOF  cat <<EOF
# Line 1180  LOGFILE="genmake.log" Line 1383  LOGFILE="genmake.log"
1383  rm -f genmake_state genmake_*optfile $LOGFILE  rm -f genmake_state genmake_*optfile $LOGFILE
1384    
1385  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1386    
1387  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1388  #parse_options  #parse_options
# Line 1208  for ac_option in "$@" ; do Line 1401  for ac_option in "$@" ; do
1401      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1402    
1403      case $ac_option in      case $ac_option in
1404            
1405          -help | --help | -h | --h)          -help | --help | -h | --h)
1406              usage ;;              usage ;;
1407            
1408          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1409              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1410          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1411              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1412          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1413              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1414            
1415            -oad | --oad)
1416                OPENAD="true" ;;
1417          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1418              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1419          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1420              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1421            
1422          -pdepend | --pdepend)          -pdepend | --pdepend)
1423              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1424          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1425              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1426            
1427          -pgroups | --pgroups)          -pgroups | --pgroups)
1428              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1429          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1430              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1431            
1432          -make | --make | -m | --m)          -make | --make | -m | --m)
1433              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1434          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1435              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1436            
1437          -bash | --bash)          -bash | --bash)
1438              ac_prev=BASH ;;              ac_prev=BASH ;;
1439          -bash=* | --bash=*)          -bash=* | --bash=*)
1440              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1441            
1442          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1443              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1444          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1445              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1446            
1447          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1448              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1449          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1450              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1451            
1452          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1453              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1454              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1455              echo              echo
1456              usage              usage
1457              ;;              ;;
1458            
1459          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1460              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1461          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1462              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1463            
1464          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1465              ac_prev=MODS ;;              ac_prev=MODS ;;
1466          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1467              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1468            
1469          -disable | --disable)          -disable | --disable)
1470              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1471          -disable=* | --disable=*)          -disable=* | --disable=*)
1472              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1473            
1474          -enable | --enable)          -enable | --enable)
1475              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1476          -enable=* | --enable=*)          -enable=* | --enable=*)
1477              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1478            
1479          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1480              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1481          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1290  for ac_option in "$@" ; do Line 1485  for ac_option in "$@" ; do
1485  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1486  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1487  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1488            
1489          -cc | --cc)          -cc | --cc)
1490              ac_prev=CC ;;              ac_prev=CC ;;
1491          -cc=* | --cc=*)          -cc=* | --cc=*)
1492              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1493            
1494          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1495              ac_prev=FC ;;              ac_prev=FC ;;
1496          -fc=* | --fc=*)          -fc=* | --fc=*)
1497              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1498            
1499          -fs | --fs)          -fs | --fs)
1500              ac_prev=FS ;;              ac_prev=FS ;;
1501          -fs=* | --fs=*)          -fs=* | --fs=*)
1502              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1503            
1504          -fs90 | --fs90)          -fs90 | --fs90)
1505              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1506          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1507              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
           
         -ieee | --ieee)  
             IEEE=true ;;  
         -noieee | --noieee)  
             IEEE= ;;  
1508    
1509          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1510              USE_R4=true ;;              USE_R4=true ;;
1511    
1512            -ieee | --ieee)
1513                IEEE=true ;;
1514            -noieee | --noieee)
1515                echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1516            -devel | --devel)
1517                IEEE=true ; DEVEL=true ;;
1518            -gsl | --gsl)
1519                GSL=true ;;
1520    
1521          -ts | --ts)          -ts | --ts)
1522              TS=true ;;              TS=true ;;
1523          -papis | --papis)          -papis | --papis)
# Line 1334  for ac_option in "$@" ; do Line 1533  for ac_option in "$@" ; do
1533          -hpmt | --hpmt)          -hpmt | --hpmt)
1534              HPMT=true ;;              HPMT=true ;;
1535    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1536          -mpi | --mpi)          -mpi | --mpi)
1537              MPI=true ;;              MPI=true ;;
1538          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1539              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1540              MPI=true ;;              MPI=true ;;
1541            
1542          -omp | --omp)          -omp | --omp)
1543              OMP=true ;;              OMP=true ;;
1544          -omp=* | --omp=*)          -omp=* | --omp=*)
1545              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1546              OMP=true ;;              OMP=true ;;
1547            
1548          -ds | --ds)          -ds | --ds)
1549              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1550            
1551            -extra_flag | --extra_flag)
1552                ac_prev=FEXTRAFLAGS ;;
1553            -extra_flag=* | --extra_flag=*)
1554                FEXTRAFLAGS=$ac_optarg ;;
1555    
1556          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1557              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1558          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1364  for ac_option in "$@" ; do Line 1562  for ac_option in "$@" ; do
1562              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1563          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1564              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1565            
1566          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1567              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1568    
# Line 1375  for ac_option in "$@" ; do Line 1573  for ac_option in "$@" ; do
1573              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1574              usage              usage
1575              ;;              ;;
1576            
1577          *)          *)
1578              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582      esac      esac
1583    
1584  done  done
1585    
1586    #TMP=./genmk_$$
1587    #- try to put temporary files in system-local /tmp dir
1588    TMP=/tmp/genmk_$$
1589    touch $TMP ; retVal=$?
1590    if [ $retVal -eq 0 ] ; then
1591      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1592    else
1593      TMP=./genmk_$$
1594    fi
1595    rm -f $TMP
1596    #echo "  temp files: $TMP.*"
1597    
1598    printf "  getting local config information:  "
1599    if test -f $gm_local ; then
1600        echo "using $gm_local"
1601        . $gm_local
1602    else
1603        echo "none found"
1604    fi
1605    
1606  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1607      echo      echo
1608      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1609      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1610      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1611      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1612      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1613      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1614      echo      echo
# Line 1406  if test "x${ROOTDIR}" = x ; then Line 1623  if test "x${ROOTDIR}" = x ; then
1623          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1624              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1625                  ROOTDIR=$d                  ROOTDIR=$d
1626                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1627                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1628                  break                  break
1629              fi              fi
1630          done          done
# Line 1439  if test "x$MAKEFILE" = x ; then Line 1656  if test "x$MAKEFILE" = x ; then
1656      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1657  fi  fi
1658    
1659  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1660  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1661      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1662          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1663          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1664          find_possible_configs          find_possible_optfile
1665      else      else
1666          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1667      fi      fi
# Line 1468  if test "x$OPTFILE" != xNONE ; then Line 1685  if test "x$OPTFILE" != xNONE ; then
1685      fi      fi
1686  fi  fi
1687    
1688  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1689  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1690      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1691            AD_OPTFILE=$MITGCM_AD_OF
1692        elif test "x$OPENAD" = x ; then
1693          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1694      else      else
1695          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1696      fi      fi
1697  fi  fi
1698  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1514  Error: no Fortran compiler: please speci Line 1733  Error: no Fortran compiler: please speci
1733  EOF  EOF
1734      exit 1      exit 1
1735  fi  fi
1736    if test "x$GET_FC_VERSION" != x ; then
1737      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1738      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1739      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1740      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1741      if test -s genmake_fc_vers1 ; then
1742        cat genmake_fc_vers1 >> $LOGFILE
1743      else
1744        cat genmake_fc_vers2 >> $LOGFILE
1745      fi
1746      echo "<-- compiler version ----" >> $LOGFILE
1747      rm -f genmake_fc_vers1 genmake_fc_vers2
1748    fi
1749    
1750  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1751      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1752  fi  fi
1753    
1754  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1755      LINK=$FC      LINK=$FC
1756  fi  fi
# Line 1531  if test "x$MAKE" = x ; then Line 1758  if test "x$MAKE" = x ; then
1758      MAKE="make"      MAKE="make"
1759  fi  fi
1760  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1761      CPP=cpp      CPP="cpp -traditional -P"
1762  fi  fi
1763  #EH3 === UGLY ===  #EH3 === UGLY ===
1764  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1558  EOF Line 1785  EOF
1785  else  else
1786      rm -f test_cpp      rm -f test_cpp
1787  fi  fi
1788    
1789  look_for_makedepend  look_for_makedepend
1790    
1791    #  Check that soft-link command is set and usable
1792  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1793      LN="ln -s"      LN="ln -s"
1794  fi  fi
# Line 1568  RETVAL=$? Line 1798  RETVAL=$?
1798  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1799      cat <<EOF 1>&2      cat <<EOF 1>&2
1800    
1801  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1802    command in the optfile.    command in the optfile.
1803    
1804  EOF  EOF
# Line 1586  check_for_broken_Ff Line 1816  check_for_broken_Ff
1816    
1817  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1818        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1819        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1820    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1821    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1822  fi  fi
1823  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1824        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1603  fi Line 1835  fi
1835  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1836        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1837        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1838              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1839        else        else
1840              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1841        fi        fi
# Line 1639  if test ! "x$PAPI" = x ; then Line 1871  if test ! "x$PAPI" = x ; then
1871            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1872        else        else
1873            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1874            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1875            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1876            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1877            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1651  if test ! "x$PCL" = x ; then Line 1883  if test ! "x$PCL" = x ; then
1883            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1884        else        else
1885            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1886            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1887            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1888            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1889            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1661  if test ! "x$HPMT" = x ; then Line 1893  if test ! "x$HPMT" = x ; then
1893        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1894            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1895            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1896        else if test ! "x$PCL" = x ; then        else
1897            if test ! "x$PCL" = x ; then
1898            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1899            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1900        else          else
1901            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1902            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1903            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1904            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1905            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1906        fi          fi
1907        fi        fi
1908  fi  fi
1909  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1751  rm -f genmake_tcomp* Line 1984  rm -f genmake_tcomp*
1984  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1985  check_HAVE_CLOC  check_HAVE_CLOC
1986  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1987        DEFINES="$DEFINES -DHAVE_CLOC"
1988      echo "yes"      echo "yes"
1989  else  else
1990      echo "no"      echo "no"
# Line 1765  rm -f genmake_t* Line 1999  rm -f genmake_t*
1999  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
2000  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
2001  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
2002        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2003      echo "yes"      echo "yes"
2004  else  else
2005      echo "no"      echo "no"
# Line 1774  rm -f genmake_t* Line 2009  rm -f genmake_t*
2009  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
2010  check_HAVE_SIGREG  check_HAVE_SIGREG
2011  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
2012        DEFINES="$DEFINES -DHAVE_SIGREG"
2013      echo "yes"      echo "yes"
2014  else  else
2015      echo "no"      echo "no"
# Line 1783  rm -f genmake_t* Line 2019  rm -f genmake_t*
2019  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2020  check_HAVE_STAT  check_HAVE_STAT
2021  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2022        DEFINES="$DEFINES -DHAVE_STAT"
2023      echo "yes"      echo "yes"
2024  else  else
2025      echo "no"      echo "no"
# Line 1792  rm -f genmake_t* Line 2029  rm -f genmake_t*
2029  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2030  check_netcdf_libs  check_netcdf_libs
2031  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2032        DEFINES="$DEFINES -DHAVE_NETCDF"
2033        echo "yes"
2034    else
2035        echo "no"
2036    fi
2037    
2038    printf "  Can we create LAPACK-enabled binaries...  "
2039    check_lapack_libs
2040    if test "x$HAVE_LAPACK" != x ; then
2041        DEFINES="$DEFINES -DHAVE_LAPACK"
2042      echo "yes"      echo "yes"
2043  else  else
2044      echo "no"      echo "no"
2045  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2046    
2047    printf "  Can we call FLUSH intrinsic subroutine...  "
2048    check_HAVE_FLUSH
2049    if test "x$HAVE_FLUSH" = xt ; then
2050        DEFINES="$DEFINES -DHAVE_FLUSH"
2051        echo "yes"
2052    else
2053        echo "no"
2054    fi
2055    
2056    DEFINES="$DEFINES $IGNORE_TIME"
2057  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2058      build_embed_encode      build_embed_encode
2059  fi  fi
2060  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2061      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2062    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2063  fi  fi
2064    
   
2065  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2066  printf "  Adding MODS directories: "  printf "  Adding MODS directories: "
2067  for d in $MODS ; do  for d in $MODS ; do
# Line 1821  for d in $MODS ; do Line 2077  for d in $MODS ; do
2077  done  done
2078  echo  echo
2079    
2080  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2081      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2082  fi  #fi
2083    
2084  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2085      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1981  else Line 2237  else
2237          exit 1          exit 1
2238      else      else
2239          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2240          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2241          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2242          RETVAL=$?          RETVAL=$?
2243          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2002  if test "x${PKG_GROUPS}" != x ; then Line 2258  if test "x${PKG_GROUPS}" != x ; then
2258  fi  fi
2259    
2260  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2261  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2262  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2263      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2264  done  done
2265  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2266      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2267      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2268  done  done
# Line 2024  for p in $PACKAGES ; do Line 2280  for p in $PACKAGES ; do
2280  done  done
2281  PACKAGES="$pack"  PACKAGES="$pack"
2282  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2283  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2284  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2285  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2286  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2287      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2288      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2289          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2290          exit 1          exit 1
2291      fi      fi
2292      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2293  done  done
2294  PACKAGES=  PACKAGES=
2295  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2296      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2297  done  done
2298  rm -f ./.tmp_pack  rm -f $TMP.pack
2299  echo "    packages are: $PACKAGES"  echo "    packages are: $PACKAGES"
2300    
2301  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
# Line 2076  else Line 2332  else
2332          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2333          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2334          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2335              exit 1              exit 1
2336          else          else
2337              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2338          fi          fi
# Line 2109  EOF Line 2365  EOF
2365      fi      fi
2366  fi  fi
2367    
2368    #  Make sure the openad package is enabled if using OpenAD
2369    if test "x$OPENAD" != x ; then
2370        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2371        RETVAL=$?
2372        if test "x$RETVAL" != x0 ; then
2373            cat <<EOF
2374    
2375    *********************************************************************
2376    ERROR: when generating an adjoint with OpenAD, the openad package
2377      must be enabled.  Please add it to packages.conf.
2378    *********************************************************************
2379    
2380    EOF
2381            exit 1
2382        fi
2383    fi
2384    
2385  if  test "x${PKG_DEPEND}" != x ; then  if  test "x${PKG_DEPEND}" != x ; then
2386    echo "  applying package dependency rules"    echo "  applying package dependency rules"
2387    ck=    ck=
# Line 2154  if  test "x${PKG_DEPEND}" != x ; then Line 2427  if  test "x${PKG_DEPEND}" != x ; then
2427    
2428          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2429          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2430              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2431              in_dis="f"              in_dis="f"
2432              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2433                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2179  if  test "x${PKG_DEPEND}" != x ; then Line 2452  if  test "x${PKG_DEPEND}" != x ; then
2452              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2453              exit 1              exit 1
2454          fi          fi
2455          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2456          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2457      done      done
2458      ck=$ck"t"      ck=$ck"t"
# Line 2220  for n in $names ; do Line 2493  for n in $names ; do
2493          done          done
2494          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2495              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2496              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2497          fi          fi
2498      fi      fi
2499  done  done
# Line 2233  for i in $PACKAGES ; do Line 2506  for i in $PACKAGES ; do
2506  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2507      case $i in      case $i in
2508          aim_v23)          aim_v23)
2509              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2510              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2511              ;;              ;;
2512      esac      esac
# Line 2275  for i in $spaths ; do Line 2548  for i in $spaths ; do
2548      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2549          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2550          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2551          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2552          for n in $names ; do          for n in $names ; do
2553              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2554          done          done
2555      fi      fi
2556      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2557      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2558          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2559          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2560  #**** not yet enabled ****  #**** not yet enabled ****
2561  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2562  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2297  fi Line 2570  fi
2570    
2571  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2572  #  compiler.  #  compiler.
2573  if test -f ./adSrcFiles.tmp ; then  if test -f $TMP.adSrcFiles ; then
2574      rm -f ./adSrcFiles.tmp      rm -f $TMP.adSrcFiles
2575  fi  fi
2576  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2577  touch adSrcFiles.tmp  touch $TMP.adSrcFiles
2578  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2579      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2580      for j in $list_files ; do      for j in $list_files ; do
2581          cat $i/$j >> adSrcFiles.tmp          cat $i/$j >> $TMP.adSrcFiles
2582      done      done
2583  done  done
2584  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2585      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2586      mv -f adSrcFiles.tmp_f adSrcFiles.tmp      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2587  fi  fi
2588    
2589  echo  echo
# Line 2322  for i in $INCLUDEDIRS ; do Line 2595  for i in $INCLUDEDIRS ; do
2595      fi      fi
2596  done  done
2597    
2598  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2599      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2600      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2601      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2602      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2603            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
   
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2604      fi      fi
2605  fi  fi
2606    
2607  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2608  rm -rf .links.tmp  rm -rf $TMP.links
2609  mkdir .links.tmp  mkdir $TMP.links
2610  touch .links.tmp/foo  touch $TMP.links/foo
2611  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2612      echo      echo
2613      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2614      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2367  if test ! -r ".links.tmp/foo" ; then Line 2624  if test ! -r ".links.tmp/foo" ; then
2624      echo      echo
2625      exit 1      exit 1
2626  fi  fi
2627  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2628    
2629  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2630      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2631      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2632      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2633      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2634        OADTOOLS="$TOOLSDIR/OAD_support"
2635      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2636      for i in "." $MODS ; do      for i in "." $MODS ; do
2637          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2409  if test "x$OPENAD" != x ; then Line 2667  if test "x$OPENAD" != x ; then
2667      echo "   OpenAD exceptions:  "      echo "   OpenAD exceptions:  "
2668  fi  fi
2669    
2670  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > $TMP.srclinks
2671  echo "" >> srclinks.tmp  echo "" >> $TMP.srclinks
2672  printf 'F77_SRC_FILES = ' > F77srclist.tmp  printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2673  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp  printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2674  printf 'C_SRC_FILES = '   > csrclist.tmp  printf 'C_SRC_FILES = '   > $TMP.csrclist
2675  printf 'F90_SRC_FILES = ' > F90srclist.tmp  printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2676  printf 'H_SRC_FILES = '   > hsrclist.tmp  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2677  printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2678  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2679  for d in $alldirs ; do  for d in $alldirs ; do
2680      deplist=      deplist=
# Line 2426  for d in $alldirs ; do Line 2684  for d in $alldirs ; do
2684          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2685      fi      fi
2686      for sf in $sfiles ; do      for sf in $sfiles ; do
2687          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2688              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2689                  ignore_f=f                  ignore_f=f
2690                  case $d/$sf in                  case $d/$sf in
2691                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2692                          ignore_f=t                          ignore_f=t
2693                          ;;                          ;;
2694                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2695                          ignore_f=t                          ignore_f=t
2696                          ;;                          ;;
2697                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2698                          ignore_f=t                          ignore_f=t
2699                          ;;                          ;;
2700                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2701                          ignore_f=t                          ignore_f=t
2702                          ;;                          ;;
2703                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2704                          ignore_f=t                          ignore_f=t
2705                          ;;                          ;;
2706                    *)                    *)
2707                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2708                          #  ignore all soft-links                          #  ignore all soft-links
2709                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2710                              ignore_f=t                              ignore_f=t
2711                          else                          else
2712                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2713                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2714                          fi                          fi
2715                          ;;                          ;;
2716                  esac                  esac
2717                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2718                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2719                      case $extn in                      case $extn in
2720                        F)                        F)
2721                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> $TMP.F77srclist
2722                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> $TMP.F77srclist
2723                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" = x ; then
2724                              basename=${sf%%.F}                              basename=${sf%%.F}
2725                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2726                                if test -z "$isAD" ; then
2727                                    echo    " \\"  >> $TMP.nonADF77srclist
2728                                    printf " $sf" >> $TMP.nonADF77srclist
2729                                fi
2730                            else #- OpenAD case:
2731                                basename=${sf%%.F}
2732                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2733                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2734                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2735                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2736                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2737                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2738                                  else                                  else
2739                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2740                                  fi                                  fi
# Line 2484  for d in $alldirs ; do Line 2749  for d in $alldirs ; do
2749                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2750                                  fi                                  fi
2751                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2752                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2753                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2754                                  fi                                  fi
2755                              fi                              fi
2756                          fi                          fi
2757                          ;;                          ;;
2758                      F90)                      F90)
2759                          echo    " \\"  >> F90srclist.tmp                          echo    " \\"  >> $TMP.F90srclist
2760                          printf " $sf" >> F90srclist.tmp                          printf " $sf" >> $TMP.F90srclist
2761                          ;;                          ;;
2762                      c)                      c)
2763                          echo    " \\"  >> csrclist.tmp                          echo    " \\"  >> $TMP.csrclist
2764                          printf " $sf" >> csrclist.tmp                          printf " $sf" >> $TMP.csrclist
2765                          ;;                          ;;
2766                      h)                      h)
2767                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> $TMP.hsrclist
2768                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> $TMP.hsrclist
2769                          ;;                          ;;
2770                      flow)                      flow)
2771                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> $TMP.ad_flow_files
2772                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> $TMP.ad_flow_files
2773                          ;;                          ;;
2774                     esac                     esac
2775                  fi                  fi
# Line 2513  for d in $alldirs ; do Line 2778  for d in $alldirs ; do
2778      done      done
2779      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2780        if test "$d" != "." ; then        if test "$d" != "." ; then
2781          echo "" >> srclinks.tmp          echo "" >> $TMP.srclinks
2782          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2783          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2784  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2785  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2786  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2787          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2788        fi        fi
2789      fi      fi
2790  done  done
2791  rm -rf .links.tmp  rm -rf $TMP.links
2792  echo "" >> F77srclist.tmp  echo "" >> $TMP.F77srclist
2793  echo "" >> nonADF77srclist.tmp  echo "" >> $TMP.nonADF77srclist
2794  echo "" >> csrclist.tmp  echo "" >> $TMP.csrclist
2795  echo "" >> F90srclist.tmp  echo "" >> $TMP.F90srclist
2796  echo "" >> hsrclist.tmp  echo "" >> $TMP.hsrclist
2797  echo "" >> ad_flow_files.tmp  echo "" >> $TMP.ad_flow_files
2798    
2799  CMDLINE=$0  CMDLINE=$0
2800  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2801      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2802                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2803  done  done
2804    
2805  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2568  cat >>$MAKEFILE <<EOF Line 2833  cat >>$MAKEFILE <<EOF
2833  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2834  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2835  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2836  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2837  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2838  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2583  INCLUDEDIRS = ${INCLUDEDIRS} Line 2846  INCLUDEDIRS = ${INCLUDEDIRS}
2846  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2847  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2848  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2849    OADTOOLS    = ${OADTOOLS}
2850    
2851  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2852  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2603  else Line 2867  else
2867      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2868  fi  fi
2869    
2870    # extract default cpp search path so we can pass it to makedepend
2871    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2872    
2873  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2874  # Unix ln (link)  # Unix ln (link)
2875  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2876  # Dependency generator  # Dependency generator
2877  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2878  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2625  LINK = ${LINK} ${LDADD} Line 2890  LINK = ${LINK} ${LDADD}
2890  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2891  # Includes for CPP  # Includes for CPP
2892  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2893    # default CPP includes for makedepend
2894    CPPINCLUDES = ${CPPINCLUDES}
2895  # Flags for KPP  # Flags for KPP
2896  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2897  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2642  NOOPTFILES = ${NOOPTFILES} Line 2909  NOOPTFILES = ${NOOPTFILES}
2909  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2910  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2911  LIBS = ${LIBS}  LIBS = ${LIBS}
2912  # Name of the Mekfile  # Name of the makefile
2913  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2914    # Name of the make program
2915    MAKE = ${MAKE}
2916    
2917  EOF  EOF
2918    
2919  cat F77srclist.tmp      >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2920  cat nonADF77srclist.tmp >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2921  cat csrclist.tmp        >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2922  cat F90srclist.tmp      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2923  cat hsrclist.tmp        >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2924  cat ad_flow_files.tmp   >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2925    
2926  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2927    
2928  echo >> $MAKEFILE  echo >> $MAKEFILE
2929    
# Line 2667  echo >> $MAKEFILE Line 2936  echo >> $MAKEFILE
2936  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2937  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2938  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2939  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2940  echo >> $MAKEFILE  echo >> $MAKEFILE
2941  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2942  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2943    
2944  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2945    
2946  all: \$(EXECUTABLE)  all: fwd_exe_target
2947    fwd_exe_target:
2948            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2949            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2950            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2951            @-rm -f ad_config.template
2952            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2953    
2954  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2955          @echo Creating \$@ ...          @echo Creating \$@ ...
2956          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2957    
2958  depend:  depend:
2959          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2960          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2961          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2962          -rm -f makedepend.out          -rm -f makedepend.out
2963    
# Line 2690  libmitgcmuv.a: \$(OBJFILES) Line 2967  libmitgcmuv.a: \$(OBJFILES)
2967          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2968          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2969    
2970    obj: \$(OBJFILES)
2971    
2972  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2973    
2974  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2975    
2976  output.txt: \$(EXECUTABLE)  # output.txt: \$(EXECUTABLE)
2977          @printf 'running ... '  #       @printf 'running ... '
2978          @\$(EXECUTABLE) > \$@  #       @\$(EXECUTABLE) > \$@
2979    
2980  # remove most of the files that "make" generates  # remove most of the files that "make" generates
2981  clean:  clean:
# Line 2707  clean: Line 2986  clean:
2986    
2987  # remove most of the files that "make" and "make depend" generate  # remove most of the files that "make" and "make depend" generate
2988  Clean:  Clean:
2989          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2990          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2991          -rm -f \$(SPECIAL_FILES) f90mkdepend.log          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2992          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
         -rm -f genmake_warnings genmake_errors make.log  
2993    
2994  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2995  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2996  CLEAN:  CLEAN:
2997          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2998          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.bak $MAKEFILE.old          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2999          -rm -f $LOGFILE genmake_state genmake_*optfile genmake.tr_log make.tr_log          -rm -f $LOGFILE genmake_state genmake_*optfile
3000            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3001            -rm -rf mpi_headers mnc_test_*
3002          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3003          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3004          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3005          -rm -f *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3006            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3007          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3008          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
3009    
3010  makefile:  makefile:
3011          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
# Line 2734  cleanlinks: Line 3015  cleanlinks:
3015  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
3016  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3017          @echo Creating \$@ ...          @echo Creating \$@ ...
3018          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3019  AD_CONFIG.h:  AD_CONFIG.h:
3020          @echo Creating \$@ ...          @echo Creating \$@ ...
3021          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3022  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3023          @echo Creating \$@ ...          @echo Creating \$@ ...
3024          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2777  cat >>$MAKEFILE <<EOF Line 3058  cat >>$MAKEFILE <<EOF
3058  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3059  ## %.o : %.F  ## %.o : %.F
3060    
3061    # C preprocessing and replacing the _d in constants:
3062    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3063    
3064  .F.$FS:  .F.$FS:
3065          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3066  .$FS.o:  .$FS.o:
3067          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3068    .F.o:
3069            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3070  .F90.$FS90:  .F90.$FS90:
3071          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3072  .FF90.f$FS90:  .FF90.f$FS90:
3073          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3074  .$FS90.o:  .$FS90.o:
3075          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3076  .f$FS90.o:  .f$FS90.o:
# Line 2793  cat >>$MAKEFILE <<EOF Line 3079  cat >>$MAKEFILE <<EOF
3079  .c.o:  .c.o:
3080          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3081  .flow.flowdir:  .flow.flowdir:
3082          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3083    
3084  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3085  .F.p:  .F.p:
3086          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3087  .p.$FS:  .p.$FS:
3088          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3089    
# Line 2816  TAF            = ${TAF} Line 3102  TAF            = ${TAF}
3102    
3103  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3104  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3105    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3106    
3107  EOF  EOF
3108    
# Line 2833  done Line 3120  done
3120  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3121  echo >> $MAKEFILE  echo >> $MAKEFILE
3122  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3123  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3124  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3125      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3126      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3127  done  done
3128  echo >> $MAKEFILE  echo >> $MAKEFILE
3129  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3130    
3131  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3132    
3133  # ... AD ...  # ... AD ...
3134  adall: \$(EXE_AD)  adall: ad_exe_target
3135  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3136  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3137    
3138  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3139          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3140            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3141            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3142            @-rm -f ad_config.template
3143            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3144    
3145    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3146            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3147          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3148          -rm -f ad_config.template          @-rm -f ad_config.template
3149          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3150          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3151          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3152    
3153  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3154            @-rm -f ad_input_code_ad.$FS ; echo ''
3155          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3156          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3157          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 2866  adtafonly: Line 3161  adtafonly:
3161          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3162          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3163    
3164  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3165          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3166    
3167  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3168          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
# Line 2882  adonlyfwd: Line 3177  adonlyfwd:
3177  adtrick:  adtrick:
3178          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3179    
3180    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3181    
3182  # ... FTL ...  # ... FTL ...
3183  ftlall: ftl_taf  ftlall: ftl_exe_target
3184  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3185  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3186    
3187  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3188          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3189          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3190          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3192          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3193          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3194    ftl_input_code.$FS: \$(AD_FILES)
3195            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3196            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3197            @-rm -f ad_config.template
3198            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3199            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3200            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3201    
3202  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3203            @-rm -f ftl_input_code_tl.$FS ; echo ''
3204          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3205          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3206          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3207    
3208  ftltafonly:  ftltafonly:
3209          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3210          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3211          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3212    
3213  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3214          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3215    
3216  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3217          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 2915  ftl_tamc_output.$FS: ftl_input_code.$FS Line 3220  ftl_tamc_output.$FS: ftl_input_code.$FS
3220  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3221          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3222    
   
3223  # ... SVD ...  # ... SVD ...
3224  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3225          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"          @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
# Line 2936  svd_touch: Line 3240  svd_touch:
3240          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3241          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3242          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3243          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3244          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3245          -rm -f ftl_config.template          @-rm -f ad_config.template
3246    
3247  EOF  EOF
3248    
# Line 2951  if test "x$OPENAD" != x ; then Line 3255  if test "x$OPENAD" != x ; then
3255  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3256    
3257  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3258    # ... OpenAD ...
3259    
3260  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3261  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
# Line 2990  for i in `cat ${OAD_CB2M_FILES}` ; do Line 3295  for i in `cat ${OAD_CB2M_FILES}` ; do
3295    echo    " \\" >> $MAKEFILE    echo    " \\" >> $MAKEFILE
3296    printf " ${i}_mod.f$FS90" >> $MAKEFILE    printf " ${i}_mod.f$FS90" >> $MAKEFILE
3297  done  done
3298  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3299  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3300    basename=${i%%.f}    basename=${i%%.f}
3301    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
# Line 3000  for i in $AD_FILES ; do Line 3305  for i in $AD_FILES ; do
3305    fi    fi
3306  done  done
3307  echo >> $MAKEFILE  echo >> $MAKEFILE
3308  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3309    
3310  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3311    
3312  adAll: \$(EXE_AD)  adAll: ad_exe_target
3313  .PHONY: adAll  .PHONY: adAll
3314    
3315    ad_exe_target:
3316            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3317            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3318            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3319            @-rm -f ad_config.template
3320            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3321    
3322  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3323    
3324  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)  .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3325    
3326  .PHONY: adDepend  .PHONY: adDepend
3327  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3328          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3329          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3330          -rm -f makedepend.out          -rm -f makedepend.out
3331    
# Line 3022  w2f__types.F90 \ Line 3334  w2f__types.F90 \
3334  OAD_active.F90 \  OAD_active.F90 \
3335  OAD_cp.F90 \  OAD_cp.F90 \
3336  OAD_rev.F90 \  OAD_rev.F90 \
3337  OAD_tape.F90  OAD_tape.F90 \
3338    revolve.F90
3339    
3340  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3341  iaddr.c \  iaddr.c \
# Line 3038  f95_test.out: f95_test_mods.f90 f95_test Line 3351  f95_test.out: f95_test_mods.f90 f95_test
3351          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3352          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3353    
3354  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3355    
3356  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3357    
3358  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3359    
3360  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3361          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
3362    
3363  # makefile debug rule  # create sources files modules from header files containing common blocks
3364  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3365  .PHONY: openad          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3366    
3367  # create the module files  # create new header files with USE statements for the new modules made above
3368  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3369          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3370    
3371  # create the header files  # change the include directives of everybody to refer to  the new header files with the USE statements
3372  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3373          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
   
 # change everybody else to use the new module files:  
 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  
         ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3374    
3375  # makefile debug rule  # makefile debug rule
3376  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
3377  .PHONY: small_f  .PHONY: small_f
3378    
3379  ad_output.txt: \$(EXE_AD)  # ad_output.txt: \$(EXE_AD)
3380          @printf 'linking data files ... '  #       @printf 'linking data files ... '
3381          \$(LN) -f ../input_ad/data* ../input_ad/eedata .  #       \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3382          \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .  #       \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3383          @printf 'running ... '  #       @printf 'running ... '
3384          @./\$(EXE_AD) > \$@  #       @./\$(EXE_AD) > \$@
3385    
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3386  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3387          cat \$^ > \$@          cat \$^ > \$@
3388    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3389  # canonicalizer  # canonicalizer
3390  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3391          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3392    
3393    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3394    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3395            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3396    
3397  # F -> WHIRL  # F -> WHIRL
3398  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3399  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3400    
3401  # WHIRL -> XAIF  # WHIRL -> XAIF
3402  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3403          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3404    
3405  # XAIF -> XAIF'  # XAIF -> XAIF'
3406  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3407          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3408    
3409  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3410  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3411          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3412    
3413  # WHIRL' -> F'  # WHIRL' -> F'
3414  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3415          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3416    
3417  # insert template directives  # insert template directives
3418  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3419          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3420    
3421  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3422  # postprocess F'  # postprocess F'
3423  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3424          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3425            # the target is a placeholder to trigger a single execution of the rule
3426          touch \$@          touch \$@
3427          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3428          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3429    
3430  # setup some links  # link the XAIF schema files
3431  %.xsd:  %.xsd:
3432          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3433    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3434  # link the support files:  # link the support files:
3435  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3436          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
3437    
3438  whirl2f whirl2f_be:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
   
 AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  
3439    
3440  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3441    
# Line 3213  for i in $NOOPTFILES ; do Line 3471  for i in $NOOPTFILES ; do
3471  done  done
3472    
3473  echo "  Add rules for links"  echo "  Add rules for links"
3474  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3475  rm -f srclinks.tmp  rm -f $TMP.srclinks
3476    
3477  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3478  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 3222  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3480  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3480  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3481    
3482  # Create special header files  # Create special header files
3483  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3484  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3485      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3486  else  else
# Line 3236  else Line 3494  else
3494      fi      fi
3495  fi  fi
3496  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3497      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3498  fi  fi
3499    
   
3500  #  Write the "state" for future records  #  Write the "state" for future records
3501  if test "x$DUMPSTATE" = xt ; then  if test "x$DUMPSTATE" = xt ; then
3502      printf "" > genmake_state      printf "" > genmake_state
3503      for i in $gm_state ; do      for i in $gm_state ; do
3504          t1="t2=\$$i"          t1="t2=\$$i"
3505          eval $t1          eval $t1
3506          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3507      done      done
3508  fi  fi

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