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revision 1.180 by utke, Thu Dec 11 17:50:56 2008 UTC revision 1.264 by jmc, Sat Jan 25 18:25:49 2014 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -oad | --oad
23              Generate a Makefile for an OpenAD built
24    
25        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
26          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
27              Use "NAME" as the adoptfile.  By default, the file at
28              "tools/adjoint_options/adjoint_oad" (for OpenAD built) or
29              "tools/adjoint_options/adjoint_default" will be used.
30    
31        -nooptfile | --nooptfile
32          -optfile NAME | --optfile NAME | -of NAME | --of NAME
33          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
34              Use "NAME" as the optfile.  By default, an attempt will be
35              made to find an appropriate "standard" optfile in the
36              tools/build_options/ directory.
37    
38        -pdepend NAME | --pdepend NAME
39          -pdepend=NAME | --pdepend=NAME
40              Get package dependency information from "NAME".
41    
42        -pgroups NAME | --pgroups NAME
43          -pgroups=NAME | --pgroups=NAME
44              Get the package groups information from "NAME".
45    
46        -bash NAME
47              Explicitly specify the Bourne or BASH shell to use
48    
49        -make NAME | -m NAME
50          --make=NAME | -m=NAME
51              Use "NAME" for the MAKE program. The default is "make" but
52              many platforms, "gmake" is the preferred choice.
53    
54        -makefile NAME | -mf NAME
55          --makefile=NAME | -mf=NAME
56              Call the makefile "NAME".  The default is "Makefile".
57    
58        -makedepend NAME | -md NAME
59          --makedepend=NAME | -md=NAME
60              Use "NAME" for the MAKEDEPEND program.
61    
62        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
63          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
64              Specify the location of the MITgcm ROOTDIR as "NAME".
65              By default, genamke will try to find the location by
66              looking in parent directories (up to the 5th parent).
67    
68        -mods NAME | --mods NAME | -mo NAME | --mo NAME
69          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
70              Here, "NAME" specifies a list of directories that are
71              used for additional source code.  Files found in the
72              "mods list" are given preference over files of the same
73              name found elsewhere.
74    
75        -disable NAME | --disable NAME
76          -disable=NAME | --disable=NAME
77              Here "NAME" specifies a list of packages that we don't
78              want to use.  If this violates package dependencies,
79              genamke will exit with an error message.
80    
81        -enable NAME | --enable NAME
82          -enable=NAME | --enable=NAME
83              Here "NAME" specifies a list of packages that we wish
84              to specifically enable.  If this violates package
85              dependencies, genamke will exit with an error message.
86    
87        -standarddirs NAME | --standarddirs NAME
88          -standarddirs=NAME | --standarddirs=NAME
89              Here, "NAME" specifies a list of directories to be
90              used as the "standard" code.
91    
92        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
93          -fc=NAME | --fc=NAME
94              Use "NAME" as the fortran compiler.  By default, genmake
95              will search for a working compiler by trying a list of
96              "usual suspects" such as g77, f77, etc.
97    
98        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
99              Use "NAME" as the C compiler.  By default, genmake
100              will search for a working compiler by trying a list of
101              "usual suspects" such as gcc, c89, cc, etc.
102    
103        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
104              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
105              *only* works if CPP_EEOPTIONS.h allows this.
106    
107        -ignoretime | -ignore_time | --ignoretime | --ignore_time
108              Ignore all the "wall clock" routines entirely.  This will
109              not in any way hurt the model results -- it simply means
110              that the code that checks how long the model spends in
111              various routines will give junk values.
112    
113        -ts | --ts
114              Produce timing information per timestep
115        -papis | --papis
116              Produce summary MFlop/s (and IPC) with PAPI per timestep
117        -pcls | --pcls
118              Produce summary MFlop/s etc. with PCL per timestep
119        -foolad | --foolad
120              Fool the AD code generator
121        -papi | --papi
122              Performance analysis with PAPI
123        -pcl | --pcl
124              Performance analysis with PCL
125        -hpmt | --hpmt
126              Performance analysis with the HPM Toolkit
127    
128        -ieee | --ieee
129              use IEEE numerics.  Note that this option *only* works
130              if it is supported by the OPTFILE that is being used.
131        -devel | --devel
132              Add additional warning and debugging flags for development
133              (if supported by the OPTFILE); also switch to IEEE numerics.
134        -gsl | --gsl
135              Use GSL to control floating point rounding and precision
136    
137        -mpi | --mpi
138              Include MPI header files and link to MPI libraries
139        -mpi=PATH | --mpi=PATH
140              Include MPI header files and link to MPI libraries using MPI_ROOT
141              set to PATH. i.e. Include files from \$PATH/include, link to libraries
142              from \$PATH/lib and use binaries from \$PATH/bin.
143    
144        -omp | --omp
145              Activate OpenMP code + use Compiler option OMPFLAG
146        -omp=OMPFLAG | --omp=OMPFLAG
147              Activate OpenMP code + use Compiler option OMPFLAG
148    
149        -es | --es | -embed-source | --embed-source
150              Embed a tarball containing the full source code
151              (including the Makefile, etc.) used to build the
152              executable [off by default]
153    
154        -ds | --ds
155              Report genmake internal variables status (DUMPSTATE)
156              to file "genmake_state" (for debug purpose)
157    
158      While it is most often a single word, the "NAME" variables specified
159      above can in many cases be a space-delimited string such as:
160    
161        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
162        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
163        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
164    
165      which, depending upon your shell, may need to be single-quoted.
166    
167      For more detailed genmake documentation, please see:
168    
169        http://mitgcm.org/public/devel_HOWTO/
170    
171    EOF
172    
173        exit 1
174    }
175    
176  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
177  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
178  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
179      cpp_options=$1      cpp_options=$1
180      pkg=$2      pkg=$2
181      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
182      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
183      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
184      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
185  }  }
186    
187  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
188  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
189  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
190      cpp_options=$1      cpp_options=$1
191      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
192      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
193  }  }
194    
195  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 197  test_for_mpi_in_cpp_eeoptions() {
197  test_for_string_in_file() {  test_for_string_in_file() {
198      file=$1      file=$1
199      strng=$2      strng=$2
200      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
201      RETVAL=$?      RETVAL=$?
202      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
203          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
204          grep -i "$strng" $file          grep -i "$strng" $file
205          exit 99          exit 99
206      fi      fi
207      return 0      return 0
# Line 56  test_for_string_in_file() { Line 211  test_for_string_in_file() {
211  # the package list.  # the package list.
212  expand_pkg_groups() {  expand_pkg_groups() {
213      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
214      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
215          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
216          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
217          matched=0          matched=0
218          for i in $PACKAGES ; do          for i in $PACKAGES ; do
219              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
220              RETVAL=$?              RETVAL=$?
221              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
222                  matched=1                  matched=1
223                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
224                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
225                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
226              else              else
227                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
228              fi              fi
229          done          done
230          PACKAGES=$new_packages          PACKAGES=$new_packages
231          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
232          return $matched          return $matched
233      else      else
234          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 110  EOF Line 264  EOF
264              check_for_broken_Ff              check_for_broken_Ff
265          else          else
266              cat <<EOF 2>&1              cat <<EOF 2>&1
267  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
268    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
269    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
270    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
271    
272  EOF  EOF
# Line 137  EOF Line 291  EOF
291  .F.$tfs:  .F.$tfs:
292          $LN \$< \$@          $LN \$< \$@
293  EOF  EOF
294      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
295      RETVAL=$?      RETVAL=$?
296      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
297          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 299  EOF
299              FS90='fr9'              FS90='fr9'
300              check_for_broken_Ff              check_for_broken_Ff
301          else          else
302              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
303  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
304    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
305    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
306    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
307                echo ""
 EOF  
308              exit -1              exit -1
309              return              return
310          fi          fi
# Line 165  EOF Line 318  EOF
318      return      return
319  }  }
320    
   
321  look_for_makedepend()  {  look_for_makedepend()  {
322    
323      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 176  look_for_makedepend()  { Line 328  look_for_makedepend()  {
328      #      #
329      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
330      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
331      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
332      #      #
333      #  So the choices are, in order:      #  So the choices are, in order:
     #  
334      #    1) use the user-specified program      #    1) use the user-specified program
335      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
336      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
337      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
338        #             (faster, but can miss some dependencies)
339      #      #
340        echo >> $LOGFILE
341        echo "running: look_for_makedepend()" >> $LOGFILE
342        if test "x${MAKEDEPEND}" != x ; then
343            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
344            RETVAL=$?
345            if test x"$RETVAL" = x0 ; then
346                build_cyrus_makedepend
347                RETVAL=$?
348                if test "x$RETVAL" != x0 ; then
349                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
350                    MAKEDEPEND=
351                fi
352            else
353                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
354                RETVAL=$?
355                if test "x$RETVAL" = x0 ; then
356                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
357                fi
358                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
359            fi
360        fi
361      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
362          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
363          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
364          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
365  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
366  #  #
367  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
368  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
369  #   empty one to find and parse.  #   empty one to find and parse.
370  EOF  EOF
371          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 374  EOF
374        stop        stop
375        end        end
376  EOF  EOF
377          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
378          RV1=$?          RV1=$?
379            which makedepend > /dev/null 2>&1
380            RV2=$?
381            if test "x${RV2}" = x0 ; then
382                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
383                RV3=$? ; loc_msg='not working.'
384            else RV3=$RV2 ; loc_msg='not found.'
385            fi
386          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
387          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
388          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
389            if test "x${RV1}" = x0 ; then
390                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            elif test "x${RV3}" = x0 ; then
393                echo "    local tools/xmakedepend not working. Use system-default makedepend"
394              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
395                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
396          else          else
397              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
398                            echo -n "    Try to build cyrus-makedepend ..."
399              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
400              build_cyrus_makedepend              build_cyrus_makedepend
401              RETVAL=$?              RETVAL=$?
402              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
403                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
404                else
405                    echo "  Fails" ; echo "" >> $LOGFILE
406                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
407                    echo ""
408                    exit -1
409                    return
410              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
411          fi          fi
412      fi      fi
413  }  }
414    
   
415  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
416        echo >> $LOGFILE
417        echo "running: build_cyrus_makedepend()" >> $LOGFILE
418      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
419      (      (
420          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
421              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
422              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
423          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
424              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
425          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 431  build_cyrus_makedepend()  {
431      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
432      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
433          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
434            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
435          return 0          return 0
436      else      else
437          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
438          return 1          return 1
439      fi      fi
440  }  }
441    
   
442  build_embed_encode()  build_embed_encode()
443  {  {
444      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
445      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
446          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
447              echo              echo
448              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
449              echo              echo
450              EMBED_SRC=f              EMBED_SRC=f
451              return 1              return 1
452          fi          fi
453          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
454          for ic in $clist ; do          for ic in $clist ; do
455              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
456              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
457              RETVAL=$?              RETVAL=$?
458              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
459                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
460                  return 0                  return 0
461              fi              fi
462          done          done
# Line 287  build_embed_encode() Line 468  build_embed_encode()
468          return 1          return 1
469      fi      fi
470      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
471  }  }
472    
473    #  look for possible C compilers
474  # Guess possible config options for this host  look_for_C_compilers() {
475  find_possible_configs()  {      echo >> $LOGFILE
476        echo "running: look_for_C_compilers()" >> $LOGFILE
477      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
478      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
479  #include <stdio.h>  #include <stdio.h>
480  int main(int argc, char **argv) {  int main(int argc, char **argv) {
481    printf("Hello!\n");    printf("Hello!\n");
482    return 0;    return 0;
483  }  }
484  EOF  EOF
485          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
486        p_CC=
487        for c in $tmp ; do
488            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
489            echo $COMM >> $LOGFILE
490            $COMM >> $LOGFILE 2>&1
491          RETVAL=$?          RETVAL=$?
492          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
493                echo " $c test successful" >> $LOGFILE
494              p_CC="$p_CC $c"              p_CC="$p_CC $c"
495          fi          fi
496      done      done
# Line 354  Error: No C compilers were found in your Line 506  Error: No C compilers were found in your
506  EOF  EOF
507          exit 1          exit 1
508      else      else
509          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
510          if test "x$CC" = x ; then          if test "x$CC" = x ; then
511              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
512              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
513          fi          fi
514      fi      fi
515        echo " --> set CC='$CC'" >> $LOGFILE
516    }
517    
518    # Guess possible config options for this host
519    find_possible_optfile()  {
520    
521        echo >> $LOGFILE
522        echo "running: find_possible_optfile()" >> $LOGFILE
523        tmp1=`uname`"_"`uname -m`
524        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
525        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
526        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
527        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
528        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
529        PLATFORM=$tmp3
530        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
531        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
532        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
533    
534      #================================================================      #================================================================
535      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
536      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
537        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
538      p_FC=      p_FC=
539      for c in $tmp ; do      rm -f ./genmake_hello.f
540          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
541        program hello        program hello
542        do i=1,3        do i=1,3
543          print *, 'hello world : ', i          print *, 'hello world : ', i
544        enddo        enddo
545        end        end
546  EOF  EOF
547          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
548            COMM="$f -o genmake_hello genmake_hello.f"
549            echo $COMM >> $LOGFILE
550            $COMM >> $LOGFILE 2>&1
551          RETVAL=$?          RETVAL=$?
552          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
553              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
554                p_FC="$p_FC $f"
555          fi          fi
556      done      done
557      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
558      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
559          cat 1>&2 <<EOF          cat 1>&2 <<EOF
560    
# Line 394  Error: No Fortran compilers were found i Line 567  Error: No Fortran compilers were found i
567  EOF  EOF
568          exit 1          exit 1
569      else      else
570          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
571      fi      fi
572    
573      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 576  EOF
576          for i in $p_FC ; do          for i in $p_FC ; do
577              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
578              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
579                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
580                  break                  break
581              fi              fi
582          done          done
# Line 413  EOF Line 585  EOF
585      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
586          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
587          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
588               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
589          fi          fi
590      fi      fi
591  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
592      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
593          cat 1>&2 <<EOF          cat 1>&2 <<EOF
594    
# Line 442  Error: No options file was found in:  $R Line 604  Error: No options file was found in:  $R
604  EOF  EOF
605          exit 1          exit 1
606      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
607  }  }
608    
609  #  Parse the package dependency information  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
610  get_pdepend_list()  {  #  checking for additional included headers (in case of chain of included header)
611    mpi_headers_do_local_copy() {
     #  strip the comments and then convert the dependency file into  
     #  two arrays: PNAME, DNAME  
     cat $1 | sed -e 's/#.*$//g' \  
         | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \  
         > ./.pd_tmp  
     . ./.pd_tmp  
     rm -f ./.pd_tmp  
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
612    
613    which, depending upon your shell, may need to be single-quoted.      dBug=0
614        rm -rf ./mpi_headers
615        if test -d $MPIINCLUDEDIR ; then
616    
617    For more detailed genmake documentation, please see:          #----- check for additional headers (chain of included headers)
618            echo -n '  Check MPI headers ... '
619            listIni=$MPI_HEADER_FILES
620            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
621            outp=$?
622            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
623            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
624            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
625    
626            doCheck=1 ; list2copy='' ; list2check=$listIni
627            while test $doCheck = 1 ; do
628              newList=''
629              for i in $list2check ; do
630                if test -f $MPIINCLUDEDIR/$i ; then
631                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
632                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
633                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
634                  for j in $newInc ; do
635                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
636                    outp=$?
637                    if test $outp != 0 ; then
638                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
639                      newList="$newList $j"
640                    fi
641                  done
642                  if test $dBug = 1 ; then echo "" ; fi
643                fi
644              done
645              if test "x$newList" = x ; then doCheck=0
646              else list2check=$newList ; list2copy="$list2copy $newList"
647              fi
648            done
649            list2copy="$MPI_HEADER_FILES $list2copy"
650            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
651    
652      http://mitgcm.org/devel_HOWTO/          #----- create local mpi_headers dir if we have files to copy
653            mkListInc=`echo $list2copy | wc -w`
654            if test $mkListInc != 0 ; then
655              echo 'create local "./mpi_headers" dir'
656              mkdir -p ./mpi_headers
657              INCLUDES="-I./mpi_headers $INCLUDES"
658              mkListInc=1
659            fi
660            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
661    
662            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
663            for i in $list2copy ; do
664              if test -f $MPIINCLUDEDIR/$i ; then
665                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
666                if test $i = 'mpif.h' ; then
667                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
668                fi
669                if test $mkListInc = 2 ; then
670                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
671                fi
672                if test $mkListInc = 1 ; then
673                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
674                fi
675              fi
676            done
677        else
678            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
679            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
680    #       exit -1
681        fi
682    }
683    
684  EOF  #  Parse the package dependency information
685    get_pdepend_list()  {
686    
687      exit 1      #  strip the comments and then convert the dependency file into
688        #  two arrays: PNAME, DNAME
689        cat $1 | sed -e 's/#.*$//g' \
690            | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
691            > ./.pd_tmp
692        RETVAL=$?
693        if test ! "x${RETVAL}" = x0 ; then
694          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
695          exit 1
696        fi
697        . ./.pd_tmp
698        rm -f ./.pd_tmp
699  }  }
700    
701  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 642  get_fortran_c_namemangling()  { Line 703  get_fortran_c_namemangling()  {
703    
704      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
705      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
706          return 0          return 0
707      fi      fi
708        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
709    
710      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
711        
712      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
713  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
714  EOF  EOF
715      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
716        echo ' '$COMM >> $LOGFILE
717        $COMM >> $LOGFILE 2>&1
718      RETVAL=$?      RETVAL=$?
719      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
720          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
721          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
722    
723  WARNING: C test compile fails   WARNING: C test compile fails
724  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
725  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
726  EOF  EOF
727          return 1          return 1
728      fi      fi
# Line 666  EOF Line 730  EOF
730      RETVAL=$?      RETVAL=$?
731      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
732          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
733          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
734    
735  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
736  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
737  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
738  EOF  EOF
739          return 1          return 1
740      fi      fi
# Line 680  EOF Line 744  EOF
744        call tsub( string )        call tsub( string )
745        end        end
746  EOF  EOF
747      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
748        echo ' '$COMM >> $LOGFILE
749        $COMM >> $LOGFILE 2>&1
750      RETVAL=$?      RETVAL=$?
751      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
752          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
753          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
754    
755  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
756  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
757  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
758  EOF  EOF
759          return 1          return 1
760      fi      fi
# Line 696  EOF Line 762  EOF
762      RETVAL=$?      RETVAL=$?
763      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
764          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
765          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
766    
767  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
768  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
769  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
770  EOF  EOF
771          return 1          return 1
772      fi      fi
# Line 726  EOF Line 792  EOF
792    
793      #  cleanup the testing files      #  cleanup the testing files
794      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
795    
796        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
797    }
798    
799  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
800        echo >> $LOGFILE
801        echo "running: check_HAVE_CLOC()" >> $LOGFILE
802      get_fortran_c_namemangling      get_fortran_c_namemangling
803      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
804  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 747  void FC_NAMEMANGLE(cloc) ( double *curti Line 816  void FC_NAMEMANGLE(cloc) ( double *curti
816  }  }
817  EOF  EOF
818      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
819      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
820      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
821      RET_C=$?      RET_C=$?
822      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
823        program hello        program hello
# Line 759  EOF Line 828  EOF
828        end        end
829  EOF  EOF
830      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
831      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
832      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
833      RET_F=$?      RET_F=$?
834      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
835      RETVAL=$?      RETVAL=$?
836      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
837          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
838      fi      fi
839      rm -f genmake_tc*      rm -f genmake_tc*
840        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
841  }  }
842    
   
843  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
844      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
845          return          return
846      fi      fi
847        echo >> $LOGFILE
848        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
849      get_fortran_c_namemangling      get_fortran_c_namemangling
850      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
851  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 808  void FC_NAMEMANGLE(sigreg) (int * aip) Line 878  void FC_NAMEMANGLE(sigreg) (int * aip)
878  }  }
879  EOF  EOF
880      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
881      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
882      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
883      RET_C=$?      RET_C=$?
884      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
885        program hello        program hello
# Line 819  EOF Line 889  EOF
889        call sigreg(anint)        call sigreg(anint)
890        end        end
891  EOF  EOF
892      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
893      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
894      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
895      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
896      RETVAL=$?      RETVAL=$?
897      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
898          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
899      fi      fi
900      rm -f genmake_tc*      rm -f genmake_tc*
901        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
902  }  }
903    
   
904  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
905      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
906          return          return
907      fi      fi
908        echo >> $LOGFILE
909        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
910      get_fortran_c_namemangling      get_fortran_c_namemangling
911      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
912  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 858  void FC_NAMEMANGLE(setrlstk) () Line 923  void FC_NAMEMANGLE(setrlstk) ()
923  }  }
924  EOF  EOF
925      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
926      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
927      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
928      RET_C=$?      RET_C=$?
929      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
930        program hello        program hello
# Line 867  EOF Line 932  EOF
932        call setrlstk()        call setrlstk()
933        end        end
934  EOF  EOF
935      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
936      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
937      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
938      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
939      RETVAL=$?      RETVAL=$?
940      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
941          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
942      fi      fi
943      rm -f genmake_tc*      rm -f genmake_tc*
944        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
945  }  }
946    
   
947  check_HAVE_STAT()  {  check_HAVE_STAT()  {
948        echo >> $LOGFILE
949        echo "running: check_HAVE_STAT()" >> $LOGFILE
950      get_fortran_c_namemangling      get_fortran_c_namemangling
951      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
952  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 904  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 968  void FC_NAMEMANGLE(tfsize) ( int *nbyte
968  }  }
969  EOF  EOF
970      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
971      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
972      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
973      RET_C=$?      RET_C=$?
974      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 914  EOF Line 978  EOF
978        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
979        end        end
980  EOF  EOF
981      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
982      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
983      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
984      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
985      RETVAL=$?      RETVAL=$?
986      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
987          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
988      fi      fi
989      rm -f genmake_tc*      rm -f genmake_tc*
990        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
991  }  }
992    
   
993  check_netcdf_libs()  {  check_netcdf_libs()  {
994      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
995          return          return
996      fi      fi
997      echo >> genmake_warnings      echo >> $LOGFILE
998      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
999      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
1000        program fgennc        program fgennc
1001  #include "netcdf.inc"  #include "netcdf.inc"
1002  EOF  EOF
1003      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1004          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1005      fi     #fi
1006      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1007        integer iret, ncid, xid        integer iret, ncid, xid
1008        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 952  EOF Line 1013  EOF
1013        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1014        end        end
1015  EOF  EOF
1016      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1017      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1018      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1019      RET_CPP=f      RET_CPP=f
1020      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1021      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 970  EOF Line 1031  EOF
1031      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1032          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1033      RET_COMPILE=$?      RET_COMPILE=$?
1034      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1035    
1036      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1037      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 981  EOF Line 1042  EOF
1042    
1043      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1044          HAVE_NETCDF=t          HAVE_NETCDF=t
1045            echo "check_netcdf: successful" >> $LOGFILE
1046      else      else
1047          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1048          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1049          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1050          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1051          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 991  EOF Line 1053  EOF
1053              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1054              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1055          RET_COMPILE=$?          RET_COMPILE=$?
1056          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1057            cat genmake_tnc.log >> $LOGFILE
1058          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1059              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1060              HAVE_NETCDF=t              HAVE_NETCDF=t
1061                echo "check_netcdf: successful" >> $LOGFILE
1062          else          else
1063          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1064              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1065              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1066              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1067              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1005  EOF Line 1069  EOF
1069                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1070                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1071              RET_COMPILE=$?              RET_COMPILE=$?
1072              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1073                cat genmake_tnc.log >> $LOGFILE
1074              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1075                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1076                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1077                    echo "check_netcdf: successful" >> $LOGFILE
1078              fi              fi
1079          fi          fi
1080      fi      fi
1081      rm -f genmake_tnc*      rm -f genmake_tnc*
1082        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1083    }
1084    
1085    check_lapack_libs()  {
1086        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1087            return
1088        fi
1089        echo >> $LOGFILE
1090        echo "running: check_lapack_libs()" >> $LOGFILE
1091        cat <<EOF > genmake_tla.F
1092          program fgenla
1093          integer info
1094          integer ipiv( 2 )
1095          double precision ab( 4, 2 ), b( 2 )
1096          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1097          data b / 1., 1. /
1098          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1099          IF (info .NE. 0) write(*,*) 'Error:', info
1100          write(*,*) b
1101          end
1102    EOF
1103        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1104        cat genmake_tla.F >> genmake_tla.log
1105        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1106        RET_CPP=f
1107        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1108        echo "$COMM" >> genmake_tla.log
1109        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1110        if test "x$RET_CPP" = xf ; then
1111            echo "  WARNING: CPP failed to pre-process the lapack test." \
1112                >> genmake_tla.log
1113            echo "    Please check that \$INCLUDES is properly set." \
1114                >> genmake_tla.log
1115        fi
1116        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1117        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1118        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1119            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1120        RET_COMPILE=$?
1121        cat genmake_tla.log >> $LOGFILE
1122    
1123        # test program execution not always possible (see check_netcdf_libs)
1124        #
1125        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1126        #RETVAL=$?
1127        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1128    
1129        if test "x$RET_COMPILE" = x0 ; then
1130            HAVE_LAPACK=t
1131            echo "check_lapack: successful" >> $LOGFILE
1132        else
1133            # try again with "-llapack" added to the libs
1134            echo "==> try again with added '-llapack'" > genmake_tla.log
1135            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1136            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1137            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1138            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1139                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1140                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1141            RET_COMPILE=$?
1142            echo >> $LOGFILE
1143            cat genmake_tla.log >> $LOGFILE
1144            if test "x$RET_COMPILE" = x0 ; then
1145                LIBS="$LIBS -llapack"
1146                HAVE_LAPACK=t
1147                echo "check_lapack: successful" >> $LOGFILE
1148            else
1149            # try again with "-lf77blas -lcblas" added to the libs
1150                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1151                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1152                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1153                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1154                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1155                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1156                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1157                RET_COMPILE=$?
1158                echo >> $LOGFILE
1159                cat genmake_tla.log >> $LOGFILE
1160                if test "x$RET_COMPILE" = x0 ; then
1161                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1162                    HAVE_LAPACK=t
1163                    echo "check_lapack: successful" >> $LOGFILE
1164                else
1165                # try again with "-latlas" added to the libs
1166                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1167                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1168                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1169                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1170                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1171                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1172                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1173                    RET_COMPILE=$?
1174                    echo >> $LOGFILE
1175                    cat genmake_tla.log >> $LOGFILE
1176                    if test "x$RET_COMPILE" = x0 ; then
1177                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1178                        HAVE_LAPACK=t
1179                        echo "check_lapack: successful" >> $LOGFILE
1180                    fi
1181                fi
1182            fi
1183        fi
1184        rm -f genmake_tla*
1185        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1186  }  }
1187    
1188    check_HAVE_FLUSH()  {
1189        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1190            return
1191        fi
1192        echo >> $LOGFILE
1193        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1194        cat <<EOF > genmake_tflsh.$FS
1195          program fgenflsh
1196          integer iounit
1197          character*9 fname
1198          iounit = 26
1199          fname = 'tmp.tflsh'
1200          open(iounit,FILE=fname,STATUS='unknown')
1201          write(iounit,*) 'genmake_tflsh: hello'
1202          call flush(iounit)
1203          close(iounit)
1204          end
1205    EOF
1206        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1207        cat genmake_tflsh.$FS >> genmake_tflsh.log
1208        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1209    
1210        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1211        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1212        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1213            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1214        RET_COMPILE=$?
1215    
1216        if test "x$RET_COMPILE" = x0 ; then
1217            HAVE_FLUSH=t
1218            #cat genmake_tflsh.log >> $LOGFILE
1219            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1220        else
1221            HAVE_FLUSH=f
1222            cat genmake_tflsh.log >> $LOGFILE
1223        fi
1224        rm -f genmake_tflsh*
1225        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1226    }
1227    
1228  ###############################################################################  ###############################################################################
1229  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1038  ENABLE= Line 1246  ENABLE=
1246  DISABLE=  DISABLE=
1247  # MAKEFILE=  # MAKEFILE=
1248  # MAKEDEPEND=  # MAKEDEPEND=
1249  PDEPEND=  PKG_DEPEND=
1250  DUMPSTATE=t  PKG_GROUPS=
1251  PDEFAULT=  DUMPSTATE=f
1252  OPTFILE=  OPTFILE=
1253  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1254  FFLAGS=  FFLAGS=
1255  FOPTIM=  FOPTIM=
1256  FEXTRAFLAGS=  FEXTRAFLAGS=
1257    USE_EXTENDED_SRC=
1258    EXTENDED_SRC_FLAG=
1259    GET_FC_VERSION=
1260  CFLAGS=  CFLAGS=
1261  KFLAGS1=  KFLAGS1=
1262  KFLAGS2=  KFLAGS2=
# Line 1056  NOOPTFILES= Line 1267  NOOPTFILES=
1267  NOOPTFLAGS=  NOOPTFLAGS=
1268  MPI=  MPI=
1269  MPIPATH=  MPIPATH=
1270    OMP=
1271    OMPFLAG=
1272    USE_R4=
1273  TS=  TS=
1274  PAPIS=  PAPIS=
1275  PCLS=  PCLS=
# Line 1067  GSL= Line 1281  GSL=
1281  DEVEL=  DEVEL=
1282  HAVE_TEST_L=  HAVE_TEST_L=
1283    
1284    # comment this line out to enable lapack test
1285    SKIP_LAPACK_CHECK=t
1286    
1287  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1288  HAVE_SYSTEM=  HAVE_SYSTEM=
1289  HAVE_FDATE=  HAVE_FDATE=
# Line 1077  HAVE_STAT= Line 1294  HAVE_STAT=
1294  HAVE_NETCDF=  HAVE_NETCDF=
1295  HAVE_ETIME=  HAVE_ETIME=
1296  IGNORE_TIME=  IGNORE_TIME=
1297    HAVE_LAPACK=
1298    HAVE_FLUSH=
1299    
1300  MODS=  MODS=
1301  TOOLSDIR=  TOOLSDIR=
# Line 1084  SOURCEDIRS= Line 1303  SOURCEDIRS=
1303  INCLUDEDIRS=  INCLUDEDIRS=
1304  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1305    
1306    #- local config file
1307    gm_local="genmake_local"
1308    
1309  G2ARGS=  G2ARGS=
1310  BASH=  BASH=
1311  PWD=`pwd`  PWD=`pwd`
# Line 1099  MACHINE=`uname -a` Line 1321  MACHINE=`uname -a`
1321  EXECUTABLE=  EXECUTABLE=
1322  EXEHOOK=  EXEHOOK=
1323  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1324  IEEE=  IEEE=
1325  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1326      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1108  FS= Line 1329  FS=
1329  FS90=  FS90=
1330    
1331  AUTODIFF_PKG_USED=f  AUTODIFF_PKG_USED=f
1332    OPENAD=
1333  AD_OPTFILE=  AD_OPTFILE=
1334  TAF=  TAF=
1335  AD_TAF_FLAGS=  AD_TAF_FLAGS=
# Line 1120  FTL_TAF_FLAGS= Line 1342  FTL_TAF_FLAGS=
1342  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1343  TAMC_EXTRA=  TAMC_EXTRA=
1344    
1345    DIVA=
1346    MPIINCLUDEDIR=
1347    MPI_HEADER_FILES=
1348    LOCAL_MPI_HEADERS=
1349    
1350  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1351  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1352  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1353    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1354    
1355  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1356  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1357  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1358  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1359  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1360  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1361    
1362  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1363  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE OPENAD TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1364  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1365  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1366    
1367  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1368  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1369    
1370  cat <<EOF  cat <<EOF
1371    
1372  GENMAKE :  GENMAKE :
1373    
1374  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1375  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1376    or for more detail see the Developer's HOWTO manual at:
1377    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1378    
1379  EOF  EOF
1380    
1381    LOGFILE="genmake.log"
1382    #- clean-up previous genmake logfiles:
1383    rm -f genmake_state genmake_*optfile $LOGFILE
1384    
1385  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1386    
1387  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1388  #parse_options  #parse_options
1389  ac_prev=  ac_prev=
1390  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1185  for ac_option in "$@" ; do Line 1397  for ac_option in "$@" ; do
1397          ac_prev=          ac_prev=
1398          continue          continue
1399      fi      fi
1400        
1401      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1402        
1403      case $ac_option in      case $ac_option in
1404            
1405          -help | --help | -h | --h)          -help | --help | -h | --h)
1406              usage ;;              usage ;;
1407            
1408          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1409              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1410          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1411              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1412          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1413              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1414            
1415            -oad | --oad)
1416                OPENAD="true" ;;
1417          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1418              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1419          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1420              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1421            
1422          -pdepend | --pdepend)          -pdepend | --pdepend)
1423              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1424          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1425              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1426            
1427          -pdefault | --pdefault)          -pgroups | --pgroups)
1428              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1429          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1430              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1431            
1432          -make | --make | -m | --m)          -make | --make | -m | --m)
1433              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1434          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1435              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1436            
1437          -bash | --bash)          -bash | --bash)
1438              ac_prev=BASH ;;              ac_prev=BASH ;;
1439          -bash=* | --bash=*)          -bash=* | --bash=*)
1440              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1441            
1442          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1443              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1444          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1445              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1446            
1447          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1448              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1449          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1450              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1451            
1452          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1453              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1454              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1455              echo              echo
1456              usage              usage
1457              ;;              ;;
1458            
1459          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1460              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1461          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1462              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1463            
1464          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1465              ac_prev=MODS ;;              ac_prev=MODS ;;
1466          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1467              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1468            
1469          -disable | --disable)          -disable | --disable)
1470              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1471          -disable=* | --disable=*)          -disable=* | --disable=*)
1472              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1473            
1474          -enable | --enable)          -enable | --enable)
1475              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1476          -enable=* | --enable=*)          -enable=* | --enable=*)
1477              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1478            
1479          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1480              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1481          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1271  for ac_option in "$@" ; do Line 1485  for ac_option in "$@" ; do
1485  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1486  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1487  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1488            
1489          -cc | --cc)          -cc | --cc)
1490              ac_prev=CC ;;              ac_prev=CC ;;
1491          -cc=* | --cc=*)          -cc=* | --cc=*)
1492              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1493            
1494          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1495              ac_prev=FC ;;              ac_prev=FC ;;
1496          -fc=* | --fc=*)          -fc=* | --fc=*)
1497              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1498            
1499          -fs | --fs)          -fs | --fs)
1500              ac_prev=FS ;;              ac_prev=FS ;;
1501          -fs=* | --fs=*)          -fs=* | --fs=*)
1502              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1503            
1504          -fs90 | --fs90)          -fs90 | --fs90)
1505              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1506          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1507              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1508            
1509            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1510                USE_R4=true ;;
1511    
1512          -ieee | --ieee)          -ieee | --ieee)
1513              IEEE=true ;;              IEEE=true ;;
1514          -noieee | --noieee)          -noieee | --noieee)
1515              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1516            -devel | --devel)
1517                IEEE=true ; DEVEL=true ;;
1518            -gsl | --gsl)
1519                GSL=true ;;
1520    
1521          -ts | --ts)          -ts | --ts)
1522              TS=true ;;              TS=true ;;
# Line 1312  for ac_option in "$@" ; do Line 1533  for ac_option in "$@" ; do
1533          -hpmt | --hpmt)          -hpmt | --hpmt)
1534              HPMT=true ;;              HPMT=true ;;
1535    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1536          -mpi | --mpi)          -mpi | --mpi)
1537              MPI=true ;;              MPI=true ;;
1538          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1539              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1540              MPI=true ;;              MPI=true ;;
1541            
1542  #       -jam | --jam)          -omp | --omp)
1543  #           JAM=1 ;;              OMP=true ;;
1544  #       -nojam | --nojam)          -omp=* | --omp=*)
1545  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1546                        OMP=true ;;
1547    
1548          -ds | --ds)          -ds | --ds)
1549              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1550            
1551            -extra_flag | --extra_flag)
1552                ac_prev=FEXTRAFLAGS ;;
1553            -extra_flag=* | --extra_flag=*)
1554                FEXTRAFLAGS=$ac_optarg ;;
1555    
1556          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1557              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1558          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1341  for ac_option in "$@" ; do Line 1562  for ac_option in "$@" ; do
1562              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1563          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1564              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1565            
1566          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1567              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1568    
# Line 1352  for ac_option in "$@" ; do Line 1573  for ac_option in "$@" ; do
1573              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1574              usage              usage
1575              ;;              ;;
1576            
1577          *)          *)
1578              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1579              usage              usage
1580              ;;              ;;
1581            
1582      esac      esac
1583        
1584  done  done
1585    
1586    #TMP=./genmk_$$
1587    #- try to put temporary files in system-local /tmp dir
1588    TMP=/tmp/genmk_$$
1589    touch $TMP ; retVal=$?
1590    if [ $retVal -eq 0 ] ; then
1591      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1592    else
1593      TMP=./genmk_$$
1594    fi
1595    rm -f $TMP
1596    #echo "  temp files: $TMP.*"
1597    
1598    printf "  getting local config information:  "
1599    if test -f $gm_local ; then
1600        echo "using $gm_local"
1601        . $gm_local
1602    else
1603        echo "none found"
1604    fi
1605    
1606  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1607      echo      echo
1608      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1609      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1610      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1611      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1612      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1613      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1614      echo      echo
1615  fi  fi
1616    
1617  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1383  if test "x${ROOTDIR}" = x ; then Line 1623  if test "x${ROOTDIR}" = x ; then
1623          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1624              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1625                  ROOTDIR=$d                  ROOTDIR=$d
1626                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1627                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1628                  break                  break
1629              fi              fi
1630          done          done
# Line 1404  fi Line 1644  fi
1644  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1645  version_file="${ROOTDIR}/doc/tag-index"  version_file="${ROOTDIR}/doc/tag-index"
1646  if test -f $version_file ; then  if test -f $version_file ; then
1647      THISVER=`grep '^checkpoint' $version_file | head -1`      THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1648  #-  remove ./BUILD_INFO.h file if older than version_file  #-  remove ./BUILD_INFO.h file if older than version_file
1649      if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then      if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1650          echo "  remove ./BUILD_INFO.h (older than ${version_file})"          echo "  remove ./BUILD_INFO.h (older than ${version_file})"
# Line 1416  if test "x$MAKEFILE" = x ; then Line 1656  if test "x$MAKEFILE" = x ; then
1656      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1657  fi  fi
1658    
1659  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1660  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1661      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1662          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1663          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1664          find_possible_configs          find_possible_optfile
1665      else      else
1666          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1667      fi      fi
# Line 1436  if test "x$OPTFILE" != xNONE ; then Line 1676  if test "x$OPTFILE" != xNONE ; then
1676              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1677              exit 1              exit 1
1678          fi          fi
1679          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1680              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1681          fi          fi
1682      else      else
# Line 1445  if test "x$OPTFILE" != xNONE ; then Line 1685  if test "x$OPTFILE" != xNONE ; then
1685      fi      fi
1686  fi  fi
1687    
1688  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1689  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1690      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" != x ; then
1691            AD_OPTFILE=$MITGCM_AD_OF
1692        elif test "x$OPENAD" = x ; then
1693          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1694      else      else
1695          AD_OPTFILE=$MITGCM_AD_OF          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_oad
1696      fi      fi
1697  fi  fi
1698  if test "x${AD_OPTFILE}" != xNONE ; then  if test "x${AD_OPTFILE}" != xNONE ; then
# Line 1463  if test "x${AD_OPTFILE}" != xNONE ; then Line 1705  if test "x${AD_OPTFILE}" != xNONE ; then
1705              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1706              exit 1              exit 1
1707          fi          fi
1708          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1709              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1710          fi          fi
1711      else      else
# Line 1491  Error: no Fortran compiler: please speci Line 1733  Error: no Fortran compiler: please speci
1733  EOF  EOF
1734      exit 1      exit 1
1735  fi  fi
1736    if test "x$GET_FC_VERSION" != x ; then
1737      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1738      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1739      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1740      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1741      if test -s genmake_fc_vers1 ; then
1742        cat genmake_fc_vers1 >> $LOGFILE
1743      else
1744        cat genmake_fc_vers2 >> $LOGFILE
1745      fi
1746      echo "<-- compiler version ----" >> $LOGFILE
1747      rm -f genmake_fc_vers1 genmake_fc_vers2
1748    fi
1749    
1750  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1751      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1752  fi  fi
1753    
1754  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1755      LINK=$FC      LINK=$FC
1756  fi  fi
# Line 1508  if test "x$MAKE" = x ; then Line 1758  if test "x$MAKE" = x ; then
1758      MAKE="make"      MAKE="make"
1759  fi  fi
1760  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1761      CPP=cpp      CPP="cpp -traditional -P"
1762  fi  fi
1763  #EH3 === UGLY ===  #EH3 === UGLY ===
1764  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1535  EOF Line 1785  EOF
1785  else  else
1786      rm -f test_cpp      rm -f test_cpp
1787  fi  fi
1788    
1789  look_for_makedepend  look_for_makedepend
1790    
1791    #  Check that soft-link command is set and usable
1792  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1793      LN="ln -s"      LN="ln -s"
1794  fi  fi
# Line 1545  RETVAL=$? Line 1798  RETVAL=$?
1798  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1799      cat <<EOF 1>&2      cat <<EOF 1>&2
1800    
1801  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1802    command in the optfile.    command in the optfile.
1803    
1804  EOF  EOF
# Line 1563  check_for_broken_Ff Line 1816  check_for_broken_Ff
1816    
1817  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1818        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1819        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1820    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1821    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1822    fi
1823    if test ! "x$OMP" = x ; then
1824          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1825          FFLAGS="$FFLAGS $OMPFLAG"
1826          F90FLAGS="$F90FLAGS $OMPFLAG"
1827          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1828    fi
1829    
1830    if test ! "x$USE_R4" = x ; then
1831          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1832          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1833  fi  fi
1834    
1835  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1836        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1837        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1838              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1839        else        else
1840              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1841        fi        fi
# Line 1605  if test ! "x$PAPI" = x ; then Line 1871  if test ! "x$PAPI" = x ; then
1871            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1872        else        else
1873            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1874            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1875            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1876            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1877            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1617  if test ! "x$PCL" = x ; then Line 1883  if test ! "x$PCL" = x ; then
1883            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1884        else        else
1885            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1886            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1887            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1888            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1889            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1627  if test ! "x$HPMT" = x ; then Line 1893  if test ! "x$HPMT" = x ; then
1893        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1894            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1895            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1896        else if test ! "x$PCL" = x ; then        else
1897            if test ! "x$PCL" = x ; then
1898            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1899            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1900        else          else
1901            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1902            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1903            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1904            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1905            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1906        fi          fi
1907        fi        fi
1908  fi  fi
1909  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1646  if test ! "x$GSL" = x ; then Line 1913  if test ! "x$GSL" = x ; then
1913        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1914        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1915  fi  fi
1916    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1917    if test ! "x$USE_EXTENDED_SRC" = x ; then
1918          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1919          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1920    fi
1921    
1922  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1923  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1712  rm -f genmake_tcomp* Line 1984  rm -f genmake_tcomp*
1984  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1985  check_HAVE_CLOC  check_HAVE_CLOC
1986  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1987        DEFINES="$DEFINES -DHAVE_CLOC"
1988      echo "yes"      echo "yes"
1989  else  else
1990      echo "no"      echo "no"
# Line 1726  rm -f genmake_t* Line 1999  rm -f genmake_t*
1999  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
2000  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
2001  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
2002        DEFINES="$DEFINES -DHAVE_SETRLSTK"
2003      echo "yes"      echo "yes"
2004  else  else
2005      echo "no"      echo "no"
# Line 1735  rm -f genmake_t* Line 2009  rm -f genmake_t*
2009  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
2010  check_HAVE_SIGREG  check_HAVE_SIGREG
2011  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
2012        DEFINES="$DEFINES -DHAVE_SIGREG"
2013      echo "yes"      echo "yes"
2014  else  else
2015      echo "no"      echo "no"
# Line 1744  rm -f genmake_t* Line 2019  rm -f genmake_t*
2019  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2020  check_HAVE_STAT  check_HAVE_STAT
2021  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2022        DEFINES="$DEFINES -DHAVE_STAT"
2023      echo "yes"      echo "yes"
2024  else  else
2025      echo "no"      echo "no"
# Line 1753  rm -f genmake_t* Line 2029  rm -f genmake_t*
2029  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2030  check_netcdf_libs  check_netcdf_libs
2031  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2032        DEFINES="$DEFINES -DHAVE_NETCDF"
2033        echo "yes"
2034    else
2035        echo "no"
2036    fi
2037    
2038    printf "  Can we create LAPACK-enabled binaries...  "
2039    check_lapack_libs
2040    if test "x$HAVE_LAPACK" != x ; then
2041        DEFINES="$DEFINES -DHAVE_LAPACK"
2042        echo "yes"
2043    else
2044        echo "no"
2045    fi
2046    
2047    printf "  Can we call FLUSH intrinsic subroutine...  "
2048    check_HAVE_FLUSH
2049    if test "x$HAVE_FLUSH" = xt ; then
2050        DEFINES="$DEFINES -DHAVE_FLUSH"
2051      echo "yes"      echo "yes"
2052  else  else
2053      echo "no"      echo "no"
2054  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2055    
2056    DEFINES="$DEFINES $IGNORE_TIME"
2057  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2058      build_embed_encode      build_embed_encode
2059  fi  fi
2060  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2061      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2062    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2063  fi  fi
2064    
   
2065  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2066  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2067  for d in $MODS ; do  for d in $MODS ; do
2068      if test ! -d $d ; then      if test ! -d $d ; then
2069          echo          echo
2070          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2071          exit 1          exit 1
2072      else      else
2073          printf " $d"          printf "$d "
2074          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2075          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2076      fi      fi
2077  done  done
2078  echo  echo
2079    
2080  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2081      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2082  fi  #fi
2083    
2084  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2085      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1824  ERROR: neither of the two default script Line 2119  ERROR: neither of the two default script
2119      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2120      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2121    
2122    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2123    working version of this script.    working version of this script.
2124    
2125  EOF  EOF
# Line 1836  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2131  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2131    
2132  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2133    
2134    #  Set Standard Code Directories:
2135    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2136        STANDARDDIRS="eesupp model"
2137    fi
2138    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2139    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2140    ckM=$?
2141    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2142    ckE=$?
2143    if test $ckM = 0 -a $ckE = 1 ; then
2144        STANDARDDIRS="$STANDARDDIRS eesupp"
2145    fi
2146    
2147  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2148  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2149  #  they appear as regular source code  #  they appear as regular source code
2150  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2151      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2152      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2153        ) > make_eesupp.errors 2>&1
2154      RETVAL=$?      RETVAL=$?
2155      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2156          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1856  fi Line 2165  fi
2165  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
2166      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2167          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
2168          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2169            ) > make_${pdir}.errors 2>&1
2170          RETVAL=$?          RETVAL=$?
2171          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2172              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1869  for pdir in exch2 regrid ; do Line 2179  for pdir in exch2 regrid ; do
2179  done  done
2180    
2181  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2182  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2183      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2184      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2185          PDEPEND=$tmp  fi
2186      else  if  test "x${PKG_DEPEND}" = x ; then
2187          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2188          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2189  else  else
2190      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2191          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2192          exit 1          exit 1
2193      fi      fi
2194        echo "  getting package dependency info from  $PKG_DEPEND"
2195    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2196        get_pdepend_list $PKG_DEPEND
2197  fi  fi
2198  echo "  getting package dependency info from  $PDEPEND"  
2199  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2200  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2201  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2202      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2203      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2204  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2205  if test ! "x${RETVAL}" = x0 ; then  fi
2206      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2207      exit 1          echo "Warning:  No package groups information was specified."
2208            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2209    else
2210        if test ! -r ${PKG_GROUPS} ; then
2211            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2212            exit 1
2213        fi
2214        echo "  getting package groups info from      $PKG_GROUPS"
2215  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2216    
2217  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2218  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2219  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2220  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2221      for i in "." $MODS ; do      for i in "." $MODS ; do
2222          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2223                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2224                  break                  break
2225          fi          fi
2226      done      done
2227  fi  fi
2228  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2229      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2230  fi      if test "x${PKG_GROUPS}" = x ; then
2231  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2232      echo "    default packages file disabled"          exit 1
2233        fi
2234  else  else
2235      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2236          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2237            exit 1
2238      else      else
2239          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2240          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2241          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2242          RETVAL=$?          RETVAL=$?
2243          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2244              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2245              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2246              exit 1              exit 1
2247          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2248      fi      fi
2249  fi  fi
2250    for i in $pkg_list ; do
2251        PACKAGES="$PACKAGES $i"
2252    done
2253    echo     "    before group expansion packages are:$PACKAGES"
2254    if test "x${PKG_GROUPS}" != x ; then
2255        RET=1
2256        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2257        echo "    after group expansion packages are: $PACKAGES"
2258    fi
2259    
2260  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2261    echo "" > $TMP.pack
2262  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2263      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2264  done  done
2265  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2266      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2267      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2268  done  done
# Line 1959  for p in $PACKAGES ; do Line 2280  for p in $PACKAGES ; do
2280  done  done
2281  PACKAGES="$pack"  PACKAGES="$pack"
2282  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2283  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2284  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2285  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2286  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2287      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2288      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2289          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2290          exit 1          exit 1
2291      fi      fi
2292      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2293  done  done
2294  PACKAGES=  PACKAGES=
2295  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2296      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2297  done  done
2298  rm -f ./.tmp_pack  rm -f $TMP.pack
2299  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2300    
2301  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2302  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2303  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2304  RETVAL=$?  mnc_in=$?
2305  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2306      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2307          cat <<EOF          cat <<EOF
   
2308  *********************************************************************  *********************************************************************
2309  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2310    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2311    
2312    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2313    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2314         NetCDF library to link against.         NetCDF library to link against.
2315    
2316    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2317  *********************************************************************  *********************************************************************
   
2318  EOF  EOF
2319          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2320          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2321      else      else
2322          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2323          RETVAL=$?          DISABLE="$DISABLE mnc"
2324          if test "x${RETVAL}" = x0 ; then      fi
2325              rm -f make_mnc.errors  else
2326          else      # we have NetCDF, we try to build MNC template files
2327              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2328              cat make_mnc.errors 1>&2      RETVAL=$?
2329        if test "x${RETVAL}" = x0 ; then
2330            rm -f make_mnc.errors
2331        else
2332            echo "Error: problem encountered while building source files in pkg/mnc:"
2333            cat make_mnc.errors 1>&2
2334            if test "x$mnc_in" = x0 ; then
2335              exit 1              exit 1
2336            else
2337                DISABLE="$DISABLE mnc"
2338          fi          fi
2339      fi      fi
2340  fi  fi
2341    
2342  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2343  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2344  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2345  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2346  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2347      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2348          cat <<EOF          cat <<EOF
   
2349  *********************************************************************  *********************************************************************
2350  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2351    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2352    
2353    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2354    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2355         NetCDF library to link against.         NetCDF library to link against.
2356    
2357    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2358  *********************************************************************  *********************************************************************
   
2359  EOF  EOF
2360          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2361          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2362        else
2363        #  this prevent to add profiles (due to pdepend rules) if not available
2364            DISABLE="$DISABLE profiles"
2365        fi
2366    fi
2367    
2368    #  Make sure the openad package is enabled if using OpenAD
2369    if test "x$OPENAD" != x ; then
2370        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2371        RETVAL=$?
2372        if test "x$RETVAL" != x0 ; then
2373            cat <<EOF
2374    
2375    *********************************************************************
2376    ERROR: when generating an adjoint with OpenAD, the openad package
2377      must be enabled.  Please add it to packages.conf.
2378    *********************************************************************
2379    
2380    EOF
2381            exit 1
2382      fi      fi
2383  fi  fi
2384    
2385  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2386  ck=    echo "  applying package dependency rules"
2387  while test "x$ck" != xtt ; do    ck=
2388      while test "x$ck" != xtt ; do
2389      i=0      i=0
2390      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2391      rtot=$nname      rtot=$nname
# Line 2055  while test "x$ck" != xtt ; do Line 2401  while test "x$ck" != xtt ; do
2401                  pin="t"                  pin="t"
2402              fi              fi
2403          done          done
2404            #  or in the current $STANDARDDIRS list?
2405            for p in $STANDARDDIRS ; do
2406                if test "x$p" = "x$pname" ; then pin="t" ; fi
2407            done
2408    
2409          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2410          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2077  while test "x$ck" != xtt ; do Line 2427  while test "x$ck" != xtt ; do
2427    
2428          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2429          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2430              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2431              in_dis="f"              in_dis="f"
2432              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2433                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2098  while test "x$ck" != xtt ; do Line 2448  while test "x$ck" != xtt ; do
2448          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2449          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2450              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2451              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2452              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2453              exit 1              exit 1
2454          fi          fi
2455          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2456          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2457      done      done
2458      ck=$ck"t"      ck=$ck"t"
2459  done    done
2460  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2461    fi
2462  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2463      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2464      if test -d $adr ; then      if test -d $adr ; then
# Line 2124  done Line 2475  done
2475    
2476  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2477  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2478  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2479  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2480  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2481  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2482  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2142  for n in $names ; do Line 2493  for n in $names ; do
2493          done          done
2494          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2495              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2496              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2497          fi          fi
2498      fi      fi
2499  done  done
# Line 2153  for i in $PACKAGES ; do Line 2504  for i in $PACKAGES ; do
2504  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2505    
2506  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2507      case $i in      case $i in
2508          aim_v23)          aim_v23)
2509              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2510              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2511              ;;              ;;
2512      esac      esac
# Line 2163  for i in $PACKAGES ; do Line 2514  for i in $PACKAGES ; do
2514    
2515  done  done
2516    
2517  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2518  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2519  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2520      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2521          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2200  for i in $spaths ; do Line 2548  for i in $spaths ; do
2548      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2549          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2550          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2551          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2552          for n in $names ; do          for n in $names ; do
2553              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2554          done          done
2555      fi      fi
2556      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2557      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2558          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2559          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2560  #**** not yet enabled ****  #**** not yet enabled ****
2561  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2562  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2222  fi Line 2570  fi
2570    
2571  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2572  #  compiler.  #  compiler.
2573  if test -f ./adSrcFiles.tmp ; then  if test -f $TMP.adSrcFiles ; then
2574      rm -f ./adSrcFiles.tmp      rm -f $TMP.adSrcFiles
2575  fi  fi
2576  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2577    touch $TMP.adSrcFiles
2578  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2579      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2580      for j in $list_files ; do      for j in $list_files ; do
2581          cat $i/$j >> adSrcFiles.tmp          cat $i/$j >> $TMP.adSrcFiles
2582      done      done
2583  done  done
2584  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2585      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2586      mv -f adSrcFiles.tmp_f adSrcFiles.tmp      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2587  fi  fi
2588    
2589  echo  echo
# Line 2246  for i in $INCLUDEDIRS ; do Line 2595  for i in $INCLUDEDIRS ; do
2595      fi      fi
2596  done  done
2597    
2598  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2599      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2600      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2601      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2602      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2603            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
       
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2604      fi      fi
2605  fi  fi
2606    
2607  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2608  rm -rf .links.tmp  rm -rf $TMP.links
2609  mkdir .links.tmp  mkdir $TMP.links
2610  touch .links.tmp/foo  touch $TMP.links/foo
2611  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2612      echo      echo
2613      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2614      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2291  if test ! -r ".links.tmp/foo" ; then Line 2624  if test ! -r ".links.tmp/foo" ; then
2624      echo      echo
2625      exit 1      exit 1
2626  fi  fi
2627  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2628    
2629  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2630      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2631      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2632      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2633      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2634        OADTOOLS="$TOOLSDIR/OAD_support"
2635      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2636      for i in "." $MODS ; do      for i in "." $MODS ; do
2637          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2333  if test "x$OPENAD" != x ; then Line 2667  if test "x$OPENAD" != x ; then
2667      echo "   OpenAD exceptions:  "      echo "   OpenAD exceptions:  "
2668  fi  fi
2669    
2670  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > $TMP.srclinks
2671  echo "" >> srclinks.tmp  echo "" >> $TMP.srclinks
2672  printf 'F77_SRC_FILES = ' > F77srclist.tmp  printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2673  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp  printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2674  printf 'C_SRC_FILES = '   > csrclist.tmp  printf 'C_SRC_FILES = '   > $TMP.csrclist
2675  printf 'F90_SRC_FILES = ' > F90srclist.tmp  printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2676  printf 'H_SRC_FILES = '   > hsrclist.tmp  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2677  printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2678  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2679  for d in $alldirs ; do  for d in $alldirs ; do
2680      deplist=      deplist=
2681      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2682      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2683      if test "x$OPENAD" != x ; then      if test "x$OPENAD" != x ; then
2684          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2685      fi      fi
2686      for sf in $sfiles ; do      for sf in $sfiles ; do
2687          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2688              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2689                  ignore_f=f                  ignore_f=f
2690                  case $d/$sf in                  case $d/$sf in
2691                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2692                          ignore_f=t                          ignore_f=t
2693                          ;;                          ;;
2694                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2695                          ignore_f=t                          ignore_f=t
2696                          ;;                          ;;
2697                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2698                          ignore_f=t                          ignore_f=t
2699                          ;;                          ;;
2700                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2701                          ignore_f=t                          ignore_f=t
2702                          ;;                          ;;
2703                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2704                          ignore_f=t                          ignore_f=t
2705                          ;;                          ;;
2706                    *)                    *)
2707                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2708                          #  ignore all soft-links                          #  ignore all soft-links
2709                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2710                              ignore_f=t                              ignore_f=t
2711                          else                          else
2712                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2713                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2714                          fi                          fi
2715                          ;;                          ;;
2716                  esac                  esac
2717                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2718                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2719                      case $extn in                      case $extn in
2720                        F)                        F)
2721                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> $TMP.F77srclist
2722                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> $TMP.F77srclist
2723                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" = x ; then
2724                              basename=${sf%%.F}                              basename=${sf%%.F}
2725                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2726                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2727                                    echo    " \\"  >> $TMP.nonADF77srclist
2728                                    printf " $sf" >> $TMP.nonADF77srclist
2729                                fi
2730                            else #- OpenAD case:
2731                                basename=${sf%%.F}
2732                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2733                                if test -z "$isAD" ; then
2734                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2735                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2736                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2737                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2738                                  else                                  else
2739                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2740                                  fi                                  fi
2741                              else # file is initially listed as an AD file we want to exclude it                              else # file is initially listed as an AD file we want to exclude it
2742                                   # or we want to retain the untransformed version                                   # or we want to retain the untransformed version
2743                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2744                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2745                                  if test -n "$notToBeTransformed"; then                                  if test -n "$notToBeTransformed"; then
2746                                      echo "    not to be transformed:  $sf"                                      echo "    not to be transformed:  $sf"
2747                                  fi                                  fi
2748                                  if test -n "$untransformedVersionToBeKept" ; then                                  if test -n "$untransformedVersionToBeKept" ; then
2749                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2750                                  fi                                      fi
2751                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2752                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2753                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2754                                  fi                                  fi
2755                              fi                              fi
2756                          fi                          fi
2757                          ;;                          ;;
2758                      F90)                      F90)
2759                          echo    " \\"  >> F90srclist.tmp                          echo    " \\"  >> $TMP.F90srclist
2760                          printf " $sf" >> F90srclist.tmp                          printf " $sf" >> $TMP.F90srclist
2761                          ;;                          ;;
2762                      c)                      c)
2763                          echo    " \\"  >> csrclist.tmp                          echo    " \\"  >> $TMP.csrclist
2764                          printf " $sf" >> csrclist.tmp                          printf " $sf" >> $TMP.csrclist
2765                          ;;                          ;;
2766                      h)                      h)
2767                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> $TMP.hsrclist
2768                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> $TMP.hsrclist
2769                          ;;                          ;;
2770                      flow)                      flow)
2771                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> $TMP.ad_flow_files
2772                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> $TMP.ad_flow_files
2773                          ;;                          ;;
2774                     esac                     esac
2775                  fi                  fi
# Line 2437  for d in $alldirs ; do Line 2778  for d in $alldirs ; do
2778      done      done
2779      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2780        if test "$d" != "." ; then        if test "$d" != "." ; then
2781          echo "" >> srclinks.tmp          echo "" >> $TMP.srclinks
2782          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2783          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2784  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2785  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2786  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2787          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2788        fi        fi
2789      fi      fi
2790  done  done
2791  rm -rf .links.tmp  rm -rf $TMP.links
2792  echo "" >> F77srclist.tmp  echo "" >> $TMP.F77srclist
2793  echo "" >> nonADF77srclist.tmp  echo "" >> $TMP.nonADF77srclist
2794  echo "" >> csrclist.tmp  echo "" >> $TMP.csrclist
2795  echo "" >> F90srclist.tmp  echo "" >> $TMP.F90srclist
2796  echo "" >> hsrclist.tmp  echo "" >> $TMP.hsrclist
2797  echo "" >> ad_flow_files.tmp  echo "" >> $TMP.ad_flow_files
2798    
2799    CMDLINE=$0
2800    for xx in "$@" ; do nw=`echo $xx | wc -w`
2801        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2802                            else CMDLINE="$CMDLINE '$xx'" ; fi
2803    done
2804    
2805  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2806      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2807  fi  fi
2808  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2809  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2464  echo "#    $MACHINE" >> $MAKEFILE Line 2811  echo "#    $MACHINE" >> $MAKEFILE
2811  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2812  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2813  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2814  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2815  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2816  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2817    
# Line 2475  EXE_SVD=$EXECUTABLE"_svd" Line 2822  EXE_SVD=$EXECUTABLE"_svd"
2822  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2823  #  #
2824  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2825  #  #
2826  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2827  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2828  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2486  cat >>$MAKEFILE <<EOF Line 2833  cat >>$MAKEFILE <<EOF
2833  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2834  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2835  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2836  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2837  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2838  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2495  cat >>$MAKEFILE <<EOF Line 2840  cat >>$MAKEFILE <<EOF
2840  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2841    
2842  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2843  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2844  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2845  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2846  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2847  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2848  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2849    OADTOOLS    = ${OADTOOLS}
2850    
2851  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2852  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2521  else Line 2867  else
2867      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2868  fi  fi
2869    
2870  #  Note: figure out some way to add Hyades JAM libraries here  # extract default cpp search path so we can pass it to makedepend
2871    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2872    
2873  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2874  # Unix ln (link)  # Unix ln (link)
2875  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2876  # Dependency generator  # Dependency generator
2877  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2878  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2544  LINK = ${LINK} ${LDADD} Line 2890  LINK = ${LINK} ${LDADD}
2890  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2891  # Includes for CPP  # Includes for CPP
2892  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2893    # default CPP includes for makedepend
2894    CPPINCLUDES = ${CPPINCLUDES}
2895  # Flags for KPP  # Flags for KPP
2896  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2897  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2561  NOOPTFILES = ${NOOPTFILES} Line 2909  NOOPTFILES = ${NOOPTFILES}
2909  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2910  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2911  LIBS = ${LIBS}  LIBS = ${LIBS}
2912  # Name of the Mekfile  # Name of the makefile
2913  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2914    # Name of the make program
2915    MAKE = ${MAKE}
2916    
2917  EOF  EOF
2918    
2919  cat F77srclist.tmp      >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2920  cat nonADF77srclist.tmp >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2921  cat csrclist.tmp        >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2922  cat F90srclist.tmp      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2923  cat hsrclist.tmp        >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2924  cat ad_flow_files.tmp   >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2925    
2926  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2927    
2928  echo >> $MAKEFILE  echo >> $MAKEFILE
2929    
2930  # add definitions for preprocessed sources  # add definitions for preprocessed sources
2931  # and note that not all systems allow case sensitive extensions  # and note that not all systems allow case sensitive extensions
2932  # hence the $FS and $FS90 here.  # hence the $FS and $FS90 here.
2933  # for fixed format f90 files we use ff90 or FF90 resp  # for fixed format f90 files we use ff90 or FF90 resp
2934  # but these are not expected to be the original source files  # but these are not expected to be the original source files
2935    
2936  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2937  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2938  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2939  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2940  echo >> $MAKEFILE  echo >> $MAKEFILE
2941  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2942  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2943    
2944  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2945    
2946  all: \$(EXECUTABLE)  all: fwd_exe_target
2947    fwd_exe_target:
2948            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2949            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2950            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2951            @-rm -f ad_config.template
2952            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2953    
2954  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2955          @echo Creating \$@ ...          @echo Creating \$@ ...
2956          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2957    
2958  depend:  depend:
2959          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2960          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2961          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2962          -rm -f makedepend.out          -rm -f makedepend.out
2963    
# Line 2609  libmitgcmuv.a: \$(OBJFILES) Line 2967  libmitgcmuv.a: \$(OBJFILES)
2967          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2968          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2969    
2970    obj: \$(OBJFILES)
2971    
2972  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2973    
2974  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
# Line 2617  output.txt: \$(EXECUTABLE) Line 2977  output.txt: \$(EXECUTABLE)
2977          @printf 'running ... '          @printf 'running ... '
2978          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2979    
2980    # remove most of the files that "make" generates
2981  clean:  clean:
2982          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2983          -rm -rf *.o          -rm -rf *.o
2984          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
2985          -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2986          -rm -rf temp.sed  
2987    # remove most of the files that "make" and "make depend" generate
2988  Clean:  Clean:
2989          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2990          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2991          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2992          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2993          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log  
2994    # remove also the executable, files that "genmake2" generates (except Makefile)
2995    #         and output from a run (plus log files from testreport)
2996  CLEAN:  CLEAN:
2997          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2998            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2999            -rm -f $LOGFILE genmake_state genmake_*optfile
3000            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
3001            -rm -rf mpi_headers mnc_test_*
3002          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
3003          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
3004          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3005          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3006            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3007          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3008          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
3009    
 #eh3 Makefile: makefile  
3010  makefile:  makefile:
3011          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3012  cleanlinks:  cleanlinks:
# Line 2647  cleanlinks: Line 3015  cleanlinks:
3015  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
3016  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3017          @echo Creating \$@ ...          @echo Creating \$@ ...
3018          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3019  AD_CONFIG.h:  AD_CONFIG.h:
3020          @echo Creating \$@ ...          @echo Creating \$@ ...
3021          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3022  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3023          @echo Creating \$@ ...          @echo Creating \$@ ...
3024          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2669  if test "x$EMBED_SRC" = xt ; then Line 3037  if test "x$EMBED_SRC" = xt ; then
3037    
3038  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
3039    
3040  ##  \$(F77_PP_SRC_FILES)  ##  \$(F77_PP_SRC_FILES)
3041  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3042          @echo Creating \$@ ...          @echo Creating \$@ ...
3043          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
# Line 2690  cat >>$MAKEFILE <<EOF Line 3058  cat >>$MAKEFILE <<EOF
3058  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3059  ## %.o : %.F  ## %.o : %.F
3060    
3061    # C preprocessing and replacing the _d in constants:
3062    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3063    
3064  .F.$FS:  .F.$FS:
3065          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3066  .$FS.o:  .$FS.o:
3067          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3068    .F.o:
3069            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3070  .F90.$FS90:  .F90.$FS90:
3071          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3072  .FF90.f$FS90:  .FF90.f$FS90:
3073          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3074  .$FS90.o:  .$FS90.o:
3075          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3076  .f$FS90.o:  .f$FS90.o:
# Line 2706  cat >>$MAKEFILE <<EOF Line 3079  cat >>$MAKEFILE <<EOF
3079  .c.o:  .c.o:
3080          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3081  .flow.flowdir:  .flow.flowdir:
3082          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3083    
3084  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3085  .F.p:  .F.p:
3086          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3087  .p.$FS:  .p.$FS:
3088          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3089    
# Line 2720  EOF Line 3093  EOF
3093  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3094  #===  for TAMC/TAF  ======================  #===  for TAMC/TAF  ======================
3095    
3096  if test "x$OPENAD" == x ; then  if test "x$OPENAD" = x ; then
3097    
3098  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3099    
# Line 2729  TAF            = ${TAF} Line 3102  TAF            = ${TAF}
3102    
3103  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3104  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3105    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3106    
3107  EOF  EOF
3108    
# Line 2746  done Line 3120  done
3120  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3121  echo >> $MAKEFILE  echo >> $MAKEFILE
3122  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3123  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3124  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3125      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3126      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3127  done  done
3128  echo >> $MAKEFILE  echo >> $MAKEFILE
3129  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3130    
3131  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3132    
3133  # ... AD ...  # ... AD ...
3134  adall: \$(EXE_AD)  adall: ad_exe_target
3135  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3136  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3137    
3138  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ad_exe_target:
3139          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3140            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3141            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3142            @-rm -f ad_config.template
3143            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3144    
3145    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3146            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3147          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3148          -rm -f ad_config.template          @-rm -f ad_config.template
3149          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3150          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3151          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3152    
3153  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3154            @-rm -f ad_input_code_ad.$FS ; echo ''
3155          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3156          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3157          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 2779  adtafonly: Line 3161  adtafonly:
3161          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3162          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3163    
3164  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3165          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3166    
3167  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3168          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3169          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3170    
3171  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3172          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3173    
3174  adonlyfwd:  adonlyfwd:
3175          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3176    
3177  adtrick:  adtrick:
3178          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3179    
3180    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3181    
3182  # ... FTL ...  # ... FTL ...
3183  ftlall: ftl_taf  ftlall: ftl_exe_target
3184  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3185  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3186    
3187  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3188          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3189          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3190          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3191          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3192          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3193          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3194    ftl_input_code.$FS: \$(AD_FILES)
3195            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3196            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3197            @-rm -f ad_config.template
3198            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3199            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3200            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3201    
3202  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3203            @-rm -f ftl_input_code_tl.$FS ; echo ''
3204          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3205          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3206          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3207    
3208  ftltafonly:  ftltafonly:
3209          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3210          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3211          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3212    
3213  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3214          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3215    
3216  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3217          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3218          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3219    
3220  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3221          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3222    
3223  # ... SVD ...  # ... SVD ...
3224  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2849  svd_touch: Line 3240  svd_touch:
3240          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3241          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3242          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3243          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3244          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3245          -rm -f ftl_config.template          @-rm -f ad_config.template
3246    
3247  EOF  EOF
3248    
3249  fi  fi
3250    
3251  #===  for OpenAD  ========================  #===  for OpenAD  ========================
3252    
3253  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
3254    
3255  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3256    
3257  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3258    
3259  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3260  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
3261  \$(F77_SRC_FILES) \  \$(F77_SRC_FILES) \
3262  \$(C_SRC_FILES) \  \$(C_SRC_FILES) \
# Line 2903  for i in `cat ${OAD_CB2M_FILES}` ; do Line 3294  for i in `cat ${OAD_CB2M_FILES}` ; do
3294    echo    " \\" >> $MAKEFILE    echo    " \\" >> $MAKEFILE
3295    printf " ${i}_mod.f$FS90" >> $MAKEFILE    printf " ${i}_mod.f$FS90" >> $MAKEFILE
3296  done  done
3297  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3298  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3299    basename=${i%%.f}    basename=${i%%.f}
3300    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
# Line 2913  for i in $AD_FILES ; do Line 3304  for i in $AD_FILES ; do
3304    fi    fi
3305  done  done
3306  echo >> $MAKEFILE  echo >> $MAKEFILE
3307  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3308    
3309  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3310    
3311  adAll: \$(EXE_AD)  adAll: \$(EXE_AD)
3312  .PHONY: adAll  .PHONY: adAll
3313    
3314  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
# Line 2926  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3317  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3317    
3318  .PHONY: adDepend  .PHONY: adDepend
3319  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3320          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3321          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3322          -rm -f makedepend.out          -rm -f makedepend.out
3323    
# Line 2935  w2f__types.F90 \ Line 3326  w2f__types.F90 \
3326  OAD_active.F90 \  OAD_active.F90 \
3327  OAD_cp.F90 \  OAD_cp.F90 \
3328  OAD_rev.F90 \  OAD_rev.F90 \
3329  OAD_tape.F90          OAD_tape.F90 \
3330    revolve.F90
3331    
3332  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3333  iaddr.c \  iaddr.c \
# Line 2944  timeRatio.c Line 3336  timeRatio.c
3336  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3337          cat \$^ > \$@          cat \$^ > \$@
3338    
3339  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3340          cat \$^ > \$@          cat \$^ > \$@
3341    
3342  f95_test.out: f95_test_mods.f90 f95_test.f90  f95_test.out: f95_test_mods.f90 f95_test.f90
3343          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3344          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3345    
3346  AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3347    
3348  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
         @echo Creating \$@ ...  
         \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)  
3349    
3350  # makefile debug rule  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
 openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
 .PHONY: openad  
3351    
3352  # create the module files  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3353  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3354          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk  
3355    # create sources files modules from header files containing common blocks
3356  # create the header files  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3357  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3358          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)  
3359    # create new header files with USE statements for the new modules made above
3360  # change everybody else to use the new module files:  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3361  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3362          ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3363    # change the include directives of everybody to refer to  the new header files with the USE statements
3364    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3365            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3366    
3367  # makefile debug rule  # makefile debug rule
3368  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 2984  ad_output.txt: \$(EXE_AD) Line 3375  ad_output.txt: \$(EXE_AD)
3375          @printf 'running ... '          @printf 'running ... '
3376          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3377    
3378  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
 ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)  
3379          cat \$^ > \$@          cat \$^ > \$@
3380    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3381  # canonicalizer  # canonicalizer
3382  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3383          ./preProcess.py --mode=reverse \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3384    
3385    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3386    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3387            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3388    
3389  # F -> WHIRL  # F -> WHIRL
3390  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3391  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3392    
3393  # WHIRL -> XAIF  # WHIRL -> XAIF
3394  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3395          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3396    
3397  # XAIF -> XAIF'  # XAIF -> XAIF'
3398  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd openad_adm  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3399          ./openad_adm -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3400    
3401  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3402  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3403          ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3404    
3405  # WHIRL' -> F'  # WHIRL' -> F'
3406  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3407          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3408    
3409  # insert template directives  # insert template directives
3410  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3411          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3412    
3413    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3414  # postprocess F'  # postprocess F'
3415  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 multi-pp.pl ../OAD_support/ad_inline.f \$(wildcard ../OAD_support/ad_template.*.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3416          perl multi-pp.pl -inline=../OAD_support/ad_inline.f \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3417          # the postprocessor still gets the name wrong          # the target is a placeholder to trigger a single execution of the rule
3418          cat \$<.pp | sed 's/RETURN//' > \$@          touch \$@
3419    # put this so make knows about the postprocessing output
3420  # extract all transformed modules  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
 all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
         cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@  
   
 # remove the transformed globals module from the  
 # transformed ad_input_code file  
 # and remove for now the duplicate variables  
 # and fix 2 data statements  
 ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
         cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@  
3421    
3422  # setup some links  # link the XAIF schema files
3423  %.xsd:  %.xsd:
3424          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3425    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3426  # link the support files:  # link the support files:
3427  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3428          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
3429    
3430  %.pl:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 openad_adm:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/test/t \$@  
3431    
3432  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3433    
# Line 3114  for i in $NOOPTFILES ; do Line 3463  for i in $NOOPTFILES ; do
3463  done  done
3464    
3465  echo "  Add rules for links"  echo "  Add rules for links"
3466  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3467  rm -f srclinks.tmp  rm -f $TMP.srclinks
3468    
3469  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3470  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 3123  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3472  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3472  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3473    
3474  # Create special header files  # Create special header files
3475  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3476  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3477      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3478  else  else
# Line 3137  else Line 3486  else
3486      fi      fi
3487  fi  fi
3488  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3489      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3490  fi  fi
3491    
   
3492  #  Write the "state" for future records  #  Write the "state" for future records
3493  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3494      printf "" > genmake_state      printf "" > genmake_state
3495      for i in $gm_state ; do      for i in $gm_state ; do
3496          t1="t2=\$$i"          t1="t2=\$$i"
3497          eval $t1          eval $t1
3498          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3499      done      done
3500  fi  fi

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