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revision 1.239 by jmc, Thu Sep 6 22:54:19 2012 UTC revision 1.263 by jahn, Mon Jan 6 16:49:10 2014 UTC
# Line 208  test_for_string_in_file() { Line 208  test_for_string_in_file() {
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
213          matched=0          matched=0
214          for i in $PACKAGES ; do          for i in $PACKAGES ; do
215              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
216              RETVAL=$?              RETVAL=$?
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
# Line 224  expand_pkg_groups() { Line 224  expand_pkg_groups() {
224              fi              fi
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
228          return $matched          return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 324  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336      echo >> $LOGFILE      echo >> $LOGFILE
337      echo "running: look_for_makedepend()" >> $LOGFILE      echo "running: look_for_makedepend()" >> $LOGFILE
# Line 343  look_for_makedepend()  { Line 342  look_for_makedepend()  {
342              build_cyrus_makedepend              build_cyrus_makedepend
343              RETVAL=$?              RETVAL=$?
344              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
345                  echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"                  echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                  MAKEDEPEND=                  MAKEDEPEND=
347              fi              fi
348          else          else
# Line 356  look_for_makedepend()  { Line 355  look_for_makedepend()  {
355          fi          fi
356      fi      fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
358          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
360          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
# Line 373  EOF Line 370  EOF
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    system-default makedepend not found. Try to build cyrus-makedepend"              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"                  echo "  Works"
400                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'              else
401                  echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE                  echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
407          fi          fi
408      fi      fi
# Line 588  EOF Line 602  EOF
602      fi      fi
603  }  }
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        rm -rf ./mpi_headers
611        if test -d $MPIINCLUDEDIR ; then
612    
613            #----- check for additional headers (chain of included headers)
614            echo -n '  Check MPI headers ... '
615            listIni=$MPI_HEADER_FILES
616            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617            outp=$?
618            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621    
622            doCheck=1 ; list2copy='' ; list2check=$listIni
623            while test $doCheck = 1 ; do
624              newList=''
625              for i in $list2check ; do
626                if test -f $MPIINCLUDEDIR/$i ; then
627                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630                  for j in $newInc ; do
631                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648            #----- create local mpi_headers dir if we have files to copy
649            mkListInc=`echo $list2copy | wc -w`
650            if test $mkListInc != 0 ; then
651              echo 'create local "./mpi_headers" dir'
652              mkdir -p ./mpi_headers
653              INCLUDES="-I./mpi_headers $INCLUDES"
654              mkListInc=1
655            fi
656            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657    
658            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659            for i in $list2copy ; do
660              if test -f $MPIINCLUDEDIR/$i ; then
661                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662                if test $i = 'mpif.h' ; then
663                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664                fi
665                if test $mkListInc = 2 ; then
666                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667                fi
668                if test $mkListInc = 1 ; then
669                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670                fi
671              fi
672            done
673        else
674            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678    }
679    
680  #  Parse the package dependency information  #  Parse the package dependency information
681  get_pdepend_list()  {  get_pdepend_list()  {
682    
# Line 907  check_netcdf_libs()  { Line 996  check_netcdf_libs()  {
996        program fgennc        program fgennc
997  #include "netcdf.inc"  #include "netcdf.inc"
998  EOF  EOF
999      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1000          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1001      fi     #fi
1002      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1003        integer iret, ncid, xid        integer iret, ncid, xid
1004        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 1092  EOF Line 1181  EOF
1181      echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE      echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182  }  }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224  ###############################################################################  ###############################################################################
1225  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1149  GSL= Line 1277  GSL=
1277  DEVEL=  DEVEL=
1278  HAVE_TEST_L=  HAVE_TEST_L=
1279    
1280    # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1284  HAVE_SYSTEM=  HAVE_SYSTEM=
1285  HAVE_FDATE=  HAVE_FDATE=
# Line 1160  HAVE_NETCDF= Line 1291  HAVE_NETCDF=
1291  HAVE_ETIME=  HAVE_ETIME=
1292  IGNORE_TIME=  IGNORE_TIME=
1293  HAVE_LAPACK=  HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
# Line 1205  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
# Line 1213  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAP Line 1350  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAP
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
# Line 1439  for ac_option in "$@" ; do Line 1576  for ac_option in "$@" ; do
1576    
1577  done  done
1578    
1579    #TMP=./genmk_$$
1580    #- try to put temporary files in system-local /tmp dir
1581    TMP=/tmp/genmk_$$
1582    touch $TMP ; retVal=$?
1583    if [ $retVal -eq 0 ] ; then
1584      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1585    else
1586      TMP=./genmk_$$
1587    fi
1588    rm -f $TMP
1589    #echo "  temp files: $TMP.*"
1590    
1591  printf "  getting local config information:  "  printf "  getting local config information:  "
1592  if test -f $gm_local ; then  if test -f $gm_local ; then
1593      echo "using $gm_local"      echo "using $gm_local"
# Line 1659  check_for_broken_Ff Line 1808  check_for_broken_Ff
1808  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1809        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1810        DEFINES="$DEFINES -DALLOW_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1811    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1812    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1813  fi  fi
1814  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1815        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1883  if test "x$HAVE_LAPACK" != x ; then Line 2034  if test "x$HAVE_LAPACK" != x ; then
2034  else  else
2035      echo "no"      echo "no"
2036  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2037    
2038    printf "  Can we call FLUSH intrinsic subroutine...  "
2039    check_HAVE_FLUSH
2040    if test "x$HAVE_FLUSH" = xt ; then
2041        DEFINES="$DEFINES -DHAVE_FLUSH"
2042        echo "yes"
2043    else
2044        echo "no"
2045    fi
2046    
2047    DEFINES="$DEFINES $IGNORE_TIME"
2048  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2049      build_embed_encode      build_embed_encode
2050  fi  fi
# Line 2089  if test "x${PKG_GROUPS}" != x ; then Line 2249  if test "x${PKG_GROUPS}" != x ; then
2249  fi  fi
2250    
2251  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2252  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2253  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2254      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2255  done  done
2256  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2257      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2258      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2259  done  done
# Line 2111  for p in $PACKAGES ; do Line 2271  for p in $PACKAGES ; do
2271  done  done
2272  PACKAGES="$pack"  PACKAGES="$pack"
2273  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2274  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2275  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2276  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2277  for i in $PACKAGES ; do  for i in $PACKAGES ; do
# Line 2120  for i in $PACKAGES ; do Line 2280  for i in $PACKAGES ; do
2280          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2281          exit 1          exit 1
2282      fi      fi
2283      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2284  done  done
2285  PACKAGES=  PACKAGES=
2286  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2287      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2288  done  done
2289  rm -f ./.tmp_pack  rm -f $TMP.pack
2290  echo "    packages are: $PACKAGES"  echo "    packages are: $PACKAGES"
2291    
2292  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
# Line 2196  EOF Line 2356  EOF
2356      fi      fi
2357  fi  fi
2358    
2359  #  Check for package RADTRANS: if LAPACK is not available,  #  Make sure the openad package is enabled if using OpenAD
2360  #  then issue a warning that the direct radtrans solver is not available.  if test "x$OPENAD" != x ; then
2361  if test "x$HAVE_LAPACK" != xt ; then      echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
     echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1  
2362      RETVAL=$?      RETVAL=$?
2363      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" != x0 ; then
2364          cat <<EOF          cat <<EOF
 *********************************************************************  
 WARNING: the "radtrans" package was enabled but tests failed to  
   compile LAPACK applications.  This means that the direct radtrans  
   solver is not available and compilation will fail if it is enabled.  
   If you want to use the direct solver, please check that:  
2365    
   1) LAPACK is correctly installed for this compiler and  
   2) the LIBS variable (within the "optfile") specifies the correct  
      LAPACK library to link against.  
2366  *********************************************************************  *********************************************************************
2367    ERROR: when generating an adjoint with OpenAD, the openad package
2368      must be enabled.  Please add it to packages.conf.
2369    *********************************************************************
2370    
2371  EOF  EOF
2372            exit 1
2373      fi      fi
2374  fi  fi
2375    
# Line 2405  fi Line 2561  fi
2561    
2562  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2563  #  compiler.  #  compiler.
2564  if test -f ./adSrcFiles.tmp ; then  if test -f $TMP.adSrcFiles ; then
2565      rm -f ./adSrcFiles.tmp      rm -f $TMP.adSrcFiles
2566  fi  fi
2567  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2568  touch adSrcFiles.tmp  touch $TMP.adSrcFiles
2569  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2570      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2571      for j in $list_files ; do      for j in $list_files ; do
2572          cat $i/$j >> adSrcFiles.tmp          cat $i/$j >> $TMP.adSrcFiles
2573      done      done
2574  done  done
2575  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2576      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2577      mv -f adSrcFiles.tmp_f adSrcFiles.tmp      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2578  fi  fi
2579    
2580  echo  echo
# Line 2430  for i in $INCLUDEDIRS ; do Line 2586  for i in $INCLUDEDIRS ; do
2586      fi      fi
2587  done  done
2588    
2589  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2590      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2591      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2592      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2593      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2594            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
   
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2595      fi      fi
2596  fi  fi
2597    
2598  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2599  rm -rf .links.tmp  rm -rf $TMP.links
2600  mkdir .links.tmp  mkdir $TMP.links
2601  touch .links.tmp/foo  touch $TMP.links/foo
2602  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2603      echo      echo
2604      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2605      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2475  if test ! -r ".links.tmp/foo" ; then Line 2615  if test ! -r ".links.tmp/foo" ; then
2615      echo      echo
2616      exit 1      exit 1
2617  fi  fi
2618  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2619    
2620  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2621      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2622      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2623      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2624      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2625        OADTOOLS="$TOOLSDIR/OAD_support"
2626      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2627      for i in "." $MODS ; do      for i in "." $MODS ; do
2628          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2517  if test "x$OPENAD" != x ; then Line 2658  if test "x$OPENAD" != x ; then
2658      echo "   OpenAD exceptions:  "      echo "   OpenAD exceptions:  "
2659  fi  fi
2660    
2661  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > $TMP.srclinks
2662  echo "" >> srclinks.tmp  echo "" >> $TMP.srclinks
2663  printf 'F77_SRC_FILES = ' > F77srclist.tmp  printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2664  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp  printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2665  printf 'C_SRC_FILES = '   > csrclist.tmp  printf 'C_SRC_FILES = '   > $TMP.csrclist
2666  printf 'F90_SRC_FILES = ' > F90srclist.tmp  printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2667  printf 'H_SRC_FILES = '   > hsrclist.tmp  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2668  printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2669  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2670  for d in $alldirs ; do  for d in $alldirs ; do
2671      deplist=      deplist=
# Line 2534  for d in $alldirs ; do Line 2675  for d in $alldirs ; do
2675          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2676      fi      fi
2677      for sf in $sfiles ; do      for sf in $sfiles ; do
2678          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2679              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2680                  ignore_f=f                  ignore_f=f
2681                  case $d/$sf in                  case $d/$sf in
# Line 2559  for d in $alldirs ; do Line 2700  for d in $alldirs ; do
2700                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2701                              ignore_f=t                              ignore_f=t
2702                          else                          else
2703                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2704                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2705                          fi                          fi
2706                          ;;                          ;;
# Line 2568  for d in $alldirs ; do Line 2709  for d in $alldirs ; do
2709                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2710                      case $extn in                      case $extn in
2711                        F)                        F)
2712                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> $TMP.F77srclist
2713                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> $TMP.F77srclist
2714                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" = x ; then
2715                              basename=${sf%%.F}                              basename=${sf%%.F}
2716                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2717                                if test -z "$isAD" ; then
2718                                    echo    " \\"  >> $TMP.nonADF77srclist
2719                                    printf " $sf" >> $TMP.nonADF77srclist
2720                                fi
2721                            else #- OpenAD case:
2722                                basename=${sf%%.F}
2723                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2724                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2725                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2726                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2727                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2728                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2729                                  else                                  else
2730                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2731                                  fi                                  fi
# Line 2592  for d in $alldirs ; do Line 2740  for d in $alldirs ; do
2740                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2741                                  fi                                  fi
2742                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2743                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2744                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2745                                  fi                                  fi
2746                              fi                              fi
2747                          fi                          fi
2748                          ;;                          ;;
2749                      F90)                      F90)
2750                          echo    " \\"  >> F90srclist.tmp                          echo    " \\"  >> $TMP.F90srclist
2751                          printf " $sf" >> F90srclist.tmp                          printf " $sf" >> $TMP.F90srclist
2752                          ;;                          ;;
2753                      c)                      c)
2754                          echo    " \\"  >> csrclist.tmp                          echo    " \\"  >> $TMP.csrclist
2755                          printf " $sf" >> csrclist.tmp                          printf " $sf" >> $TMP.csrclist
2756                          ;;                          ;;
2757                      h)                      h)
2758                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> $TMP.hsrclist
2759                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> $TMP.hsrclist
2760                          ;;                          ;;
2761                      flow)                      flow)
2762                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> $TMP.ad_flow_files
2763                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> $TMP.ad_flow_files
2764                          ;;                          ;;
2765                     esac                     esac
2766                  fi                  fi
# Line 2621  for d in $alldirs ; do Line 2769  for d in $alldirs ; do
2769      done      done
2770      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2771        if test "$d" != "." ; then        if test "$d" != "." ; then
2772          echo "" >> srclinks.tmp          echo "" >> $TMP.srclinks
2773          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2774          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2775  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2776  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2777  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2778          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2779        fi        fi
2780      fi      fi
2781  done  done
2782  rm -rf .links.tmp  rm -rf $TMP.links
2783  echo "" >> F77srclist.tmp  echo "" >> $TMP.F77srclist
2784  echo "" >> nonADF77srclist.tmp  echo "" >> $TMP.nonADF77srclist
2785  echo "" >> csrclist.tmp  echo "" >> $TMP.csrclist
2786  echo "" >> F90srclist.tmp  echo "" >> $TMP.F90srclist
2787  echo "" >> hsrclist.tmp  echo "" >> $TMP.hsrclist
2788  echo "" >> ad_flow_files.tmp  echo "" >> $TMP.ad_flow_files
2789    
2790  CMDLINE=$0  CMDLINE=$0
2791  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
# Line 2689  INCLUDEDIRS = ${INCLUDEDIRS} Line 2837  INCLUDEDIRS = ${INCLUDEDIRS}
2837  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2838  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2839  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2840    OADTOOLS    = ${OADTOOLS}
2841    
2842  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2843  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2709  else Line 2858  else
2858      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2859  fi  fi
2860    
2861    # extract default cpp search path so we can pass it to makedepend
2862    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2863    
2864  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2865  # Unix ln (link)  # Unix ln (link)
2866  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2867  # Dependency generator  # Dependency generator
2868  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2869  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2731  LINK = ${LINK} ${LDADD} Line 2881  LINK = ${LINK} ${LDADD}
2881  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2882  # Includes for CPP  # Includes for CPP
2883  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2884    # default CPP includes for makedepend
2885    CPPINCLUDES = ${CPPINCLUDES}
2886  # Flags for KPP  # Flags for KPP
2887  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2888  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2755  MAKE = ${MAKE} Line 2907  MAKE = ${MAKE}
2907    
2908  EOF  EOF
2909    
2910  cat F77srclist.tmp      >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2911  cat nonADF77srclist.tmp >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2912  cat csrclist.tmp        >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2913  cat F90srclist.tmp      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2914  cat hsrclist.tmp        >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2915  cat ad_flow_files.tmp   >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2916    
2917  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2918    
2919  echo >> $MAKEFILE  echo >> $MAKEFILE
2920    
# Line 2796  fwd_exe_target: Line 2948  fwd_exe_target:
2948    
2949  depend:  depend:
2950          @\$(MAKE) -f \$(MAKEFILE) links          @\$(MAKE) -f \$(MAKEFILE) links
2951          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2952          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2953          -rm -f makedepend.out          -rm -f makedepend.out
2954    
# Line 2829  Clean: Line 2981  Clean:
2981          @\$(MAKE) -f \$(MAKEFILE) cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2982          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2983          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
         -rm -f genmake_warnings genmake_errors make.log  
2984    
2985  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2986  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
# Line 2838  CLEAN: Line 2989  CLEAN:
2989          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2990          -rm -f $LOGFILE genmake_state genmake_*optfile          -rm -f $LOGFILE genmake_state genmake_*optfile
2991          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2992            -rm -rf mpi_headers mnc_test_*
2993          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2994          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2995          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2996          -rm -f *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
2997            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
2998          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2999          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
3000    
3001  makefile:  makefile:
3002          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
# Line 2896  cat >>$MAKEFILE <<EOF Line 3049  cat >>$MAKEFILE <<EOF
3049  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3050  ## %.o : %.F  ## %.o : %.F
3051    
3052    # C preprocessing and replacing the _d in constants:
3053    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3054    
3055  .F.$FS:  .F.$FS:
3056          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3057  .$FS.o:  .$FS.o:
3058          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3059  .F.o:  .F.o:
3060          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3061  .F90.$FS90:  .F90.$FS90:
3062          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3063  .FF90.f$FS90:  .FF90.f$FS90:
3064          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3065  .$FS90.o:  .$FS90.o:
3066          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3067  .f$FS90.o:  .f$FS90.o:
# Line 2914  cat >>$MAKEFILE <<EOF Line 3070  cat >>$MAKEFILE <<EOF
3070  .c.o:  .c.o:
3071          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3072  .flow.flowdir:  .flow.flowdir:
3073          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3074    
3075  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3076  .F.p:  .F.p:
3077          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3078  .p.$FS:  .p.$FS:
3079          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3080    
# Line 2937  TAF            = ${TAF} Line 3093  TAF            = ${TAF}
3093    
3094  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3095  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3096    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3097    
3098  EOF  EOF
3099    
# Line 2954  done Line 3111  done
3111  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3112  echo >> $MAKEFILE  echo >> $MAKEFILE
3113  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3114  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3115  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3116      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3117      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3118  done  done
3119  echo >> $MAKEFILE  echo >> $MAKEFILE
3120  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3121    
3122  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3123    
# Line 2976  ad_exe_target: Line 3133  ad_exe_target:
3133          @-rm -f ad_config.template          @-rm -f ad_config.template
3134          \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3135    
3136  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3137          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3138          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3139          @-rm -f ad_config.template          @-rm -f ad_config.template
# Line 2985  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC Line 3142  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC
3142          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3143    
3144  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3145            @-rm -f ad_input_code_ad.$FS ; echo ''
3146          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3147          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3148          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 2994  adtafonly: Line 3152  adtafonly:
3152          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3153          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3154    
3155  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3156          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3157    
3158  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3159          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
# Line 3010  adonlyfwd: Line 3168  adonlyfwd:
3168  adtrick:  adtrick:
3169          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3170    
3171  adobj: ad_taf_output.o \$(OBJFILES)  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3172    
3173  # ... FTL ...  # ... FTL ...
3174  ftlall: ftl_exe_target  ftlall: ftl_exe_target
# Line 3024  ftl_exe_target: Line 3182  ftl_exe_target:
3182          @-rm -f ad_config.template          @-rm -f ad_config.template
3183          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3184    
3185  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_input_code.$FS: \$(AD_FILES)
3186          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3187          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3188          @-rm -f ad_config.template          @-rm -f ad_config.template
# Line 3033  ftl_input_code.$FS: \$(AD_FILES) \$(H_SR Line 3191  ftl_input_code.$FS: \$(AD_FILES) \$(H_SR
3191          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3192    
3193  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3194            @-rm -f ftl_input_code_tl.$FS ; echo ''
3195          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3196          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3197          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3198    
3199  ftltafonly:  ftltafonly:
3200          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3201          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3202          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3203    
3204  \${EXE_FTL}: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3205          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3206    
3207  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3208          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 3126  for i in `cat ${OAD_CB2M_FILES}` ; do Line 3285  for i in `cat ${OAD_CB2M_FILES}` ; do
3285    echo    " \\" >> $MAKEFILE    echo    " \\" >> $MAKEFILE
3286    printf " ${i}_mod.f$FS90" >> $MAKEFILE    printf " ${i}_mod.f$FS90" >> $MAKEFILE
3287  done  done
3288  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3289  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3290    basename=${i%%.f}    basename=${i%%.f}
3291    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
# Line 3136  for i in $AD_FILES ; do Line 3295  for i in $AD_FILES ; do
3295    fi    fi
3296  done  done
3297  echo >> $MAKEFILE  echo >> $MAKEFILE
3298  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3299    
3300  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3301    
# Line 3158  w2f__types.F90 \ Line 3317  w2f__types.F90 \
3317  OAD_active.F90 \  OAD_active.F90 \
3318  OAD_cp.F90 \  OAD_cp.F90 \
3319  OAD_rev.F90 \  OAD_rev.F90 \
3320  OAD_tape.F90  OAD_tape.F90 \
3321    revolve.F90
3322    
3323  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3324  iaddr.c \  iaddr.c \
# Line 3184  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N Line 3344  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N
3344          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3345    
3346  # create sources files modules from header files containing common blocks  # create sources files modules from header files containing common blocks
3347  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3348          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3349    
3350  # create new header files with USE statements for the new modules made above  # create new header files with USE statements for the new modules made above
3351  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3352          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3353    
3354  # change the include directives of everybody to refer to  the new header files with the USE statements  # change the include directives of everybody to refer to  the new header files with the USE statements
3355  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3356          ../OAD_support/cb2mUseModules.bash $< ${MPI}          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3357    
3358  # makefile debug rule  # makefile debug rule
3359  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3215  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FI Line 3375  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FI
3375    
3376  # replace stop statements (to avoid the implied unstructured control flow)  with print statements  # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3377  ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90  ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3378          cat \$< | sed -f ../OAD_support/stop2print.sed > ad_input_code_sf.pre.s2p.f90          cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3379    
3380  # F -> WHIRL  # F -> WHIRL
3381  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
# Line 3238  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS Line 3398  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS
3398          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3399    
3400  # insert template directives  # insert template directives
3401  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3402          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3403    
3404  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3405  # postprocess F'  # postprocess F'
3406  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3407          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ../OAD_support/ad_inline.f \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3408          # the target is a placeholder to trigger a single execution of the rule          # the target is a placeholder to trigger a single execution of the rule
3409          touch \$@          touch \$@
3410  # put this so make knows about the postprocessing output  # put this so make knows about the postprocessing output
# Line 3255  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f Line 3415  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f
3415          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3416    
3417  # link the support files:  # link the support files:
3418  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3419          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
3420    
3421  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3422    
3423  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3424    
# Line 3294  for i in $NOOPTFILES ; do Line 3454  for i in $NOOPTFILES ; do
3454  done  done
3455    
3456  echo "  Add rules for links"  echo "  Add rules for links"
3457  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3458  rm -f srclinks.tmp  rm -f $TMP.srclinks
3459    
3460  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3461  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE

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