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revision 1.146 by edhill, Fri Apr 7 02:53:55 2006 UTC revision 1.263 by jahn, Mon Jan 6 16:49:10 2014 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 56  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
213          matched=0          matched=0
214          for i in $PACKAGES ; do          for i in $PACKAGES ; do
215              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
216              RETVAL=$?              RETVAL=$?
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
224              fi              fi
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
228          return $matched          return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 110  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 137  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 165  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 176  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
358          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
360          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
361  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362  #  #
363  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
364  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
365  #   empty one to find and parse.  #   empty one to find and parse.
366  EOF  EOF
367          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 370  EOF
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                            echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
407          fi          fi
408      fi      fi
409  }  }
410    
   
411  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
412        echo >> $LOGFILE
413        echo "running: build_cyrus_makedepend()" >> $LOGFILE
414      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
415      (      (
416          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
418              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
419          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
420              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
421          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 427  build_cyrus_makedepend()  {
427      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
428      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
429          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431          return 0          return 0
432      else      else
433          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434          return 1          return 1
435      fi      fi
436  }  }
437    
   
438  build_embed_encode()  build_embed_encode()
439  {  {
440      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
441      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443              echo              echo
444              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445              echo              echo
446              EMBED_SRC=f              EMBED_SRC=f
447              return 1              return 1
448          fi          fi
449          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
450          for ic in $clist ; do          for ic in $clist ; do
451              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
452              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453              RETVAL=$?              RETVAL=$?
454              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
455                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
456                  return 0                  return 0
457              fi              fi
458          done          done
# Line 287  build_embed_encode() Line 464  build_embed_encode()
464          return 1          return 1
465      fi      fi
466      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
467  }  }
468    
469    #  look for possible C compilers
470  # Guess possible config options for this host  look_for_C_compilers() {
471  find_possible_configs()  {      echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
474      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
475  #include <stdio.h>  #include <stdio.h>
476  int main(int argc, char **argv) {  int main(int argc, char **argv) {
477    printf("Hello!\n");    printf("Hello!\n");
478    return 0;    return 0;
479  }  }
480  EOF  EOF
481          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483        for c in $tmp ; do
484            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485            echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487          RETVAL=$?          RETVAL=$?
488          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490              p_CC="$p_CC $c"              p_CC="$p_CC $c"
491          fi          fi
492      done      done
# Line 354  Error: No C compilers were found in your Line 502  Error: No C compilers were found in your
502  EOF  EOF
503          exit 1          exit 1
504      else      else
505          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
506          if test "x$CC" = x ; then          if test "x$CC" = x ; then
507              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
508              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
509          fi          fi
510      fi      fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530      #================================================================      #================================================================
531      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
532      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534      p_FC=      p_FC=
535      for c in $tmp ; do      rm -f ./genmake_hello.f
536          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 394  Error: No Fortran compilers were found i Line 563  Error: No Fortran compilers were found i
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
567      fi      fi
568    
569      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 572  EOF
572          for i in $p_FC ; do          for i in $p_FC ; do
573              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
575                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                  break                  break
577              fi              fi
578          done          done
# Line 413  EOF Line 581  EOF
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 442  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        rm -rf ./mpi_headers
611        if test -d $MPIINCLUDEDIR ; then
612    
613            #----- check for additional headers (chain of included headers)
614            echo -n '  Check MPI headers ... '
615            listIni=$MPI_HEADER_FILES
616            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617            outp=$?
618            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621    
622            doCheck=1 ; list2copy='' ; list2check=$listIni
623            while test $doCheck = 1 ; do
624              newList=''
625              for i in $list2check ; do
626                if test -f $MPIINCLUDEDIR/$i ; then
627                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630                  for j in $newInc ; do
631                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648            #----- create local mpi_headers dir if we have files to copy
649            mkListInc=`echo $list2copy | wc -w`
650            if test $mkListInc != 0 ; then
651              echo 'create local "./mpi_headers" dir'
652              mkdir -p ./mpi_headers
653              INCLUDES="-I./mpi_headers $INCLUDES"
654              mkListInc=1
655            fi
656            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657    
658            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659            for i in $list2copy ; do
660              if test -f $MPIINCLUDEDIR/$i ; then
661                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662                if test $i = 'mpif.h' ; then
663                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664                fi
665                if test $mkListInc = 2 ; then
666                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667                fi
668                if test $mkListInc = 1 ; then
669                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670                fi
671              fi
672            done
673        else
674            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678  }  }
679    
680  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 683  get_pdepend_list()  {
683      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
684      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
685      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
686          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
687          > ./.pd_tmp          > ./.pd_tmp
688        RETVAL=$?
689        if test ! "x${RETVAL}" = x0 ; then
690          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
691          exit 1
692        fi
693      . ./.pd_tmp      . ./.pd_tmp
694      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s with PAPI per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
695  }  }
696    
697  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 636  get_fortran_c_namemangling()  { Line 699  get_fortran_c_namemangling()  {
699    
700      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
702          return 0          return 0
703      fi      fi
704        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705    
706      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
707        
708      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
709  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
710  EOF  EOF
711      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
712        echo ' '$COMM >> $LOGFILE
713        $COMM >> $LOGFILE 2>&1
714      RETVAL=$?      RETVAL=$?
715      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
716          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
717          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
718    
719  WARNING: C test compile fails   WARNING: C test compile fails
720  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
721  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
722  EOF  EOF
723          return 1          return 1
724      fi      fi
# Line 660  EOF Line 726  EOF
726      RETVAL=$?      RETVAL=$?
727      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
728          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
729          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
730    
731  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
732  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
734  EOF  EOF
735          return 1          return 1
736      fi      fi
# Line 674  EOF Line 740  EOF
740        call tsub( string )        call tsub( string )
741        end        end
742  EOF  EOF
743      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
744        echo ' '$COMM >> $LOGFILE
745        $COMM >> $LOGFILE 2>&1
746      RETVAL=$?      RETVAL=$?
747      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
748          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
749          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
750    
751  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
752  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
753  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
754  EOF  EOF
755          return 1          return 1
756      fi      fi
# Line 690  EOF Line 758  EOF
758      RETVAL=$?      RETVAL=$?
759      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
760          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
761          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
762    
763  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
764  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
765  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
766  EOF  EOF
767          return 1          return 1
768      fi      fi
# Line 720  EOF Line 788  EOF
788    
789      #  cleanup the testing files      #  cleanup the testing files
790      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
791    
792        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
793    }
794    
795  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
796        echo >> $LOGFILE
797        echo "running: check_HAVE_CLOC()" >> $LOGFILE
798      get_fortran_c_namemangling      get_fortran_c_namemangling
799      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
800  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 740  void FC_NAMEMANGLE(cloc) ( double *curti Line 811  void FC_NAMEMANGLE(cloc) ( double *curti
811   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
812  }  }
813  EOF  EOF
814      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
815        echo $COMM >> $LOGFILE
816        $COMM >> $LOGFILE 2>&1
817      RET_C=$?      RET_C=$?
818      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
819        program hello        program hello
# Line 750  EOF Line 823  EOF
823        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
824        end        end
825  EOF  EOF
826      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
827        echo $COMM >> $LOGFILE
828        $COMM >> $LOGFILE 2>&1
829      RET_F=$?      RET_F=$?
830      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
831      RETVAL=$?      RETVAL=$?
832      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
833          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
834      fi      fi
835      rm -f genmake_tc*      rm -f genmake_tc*
836        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
837  }  }
838    
   
839  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
840        if test ! "x$HAVE_SIGREG" = x ; then
841            return
842        fi
843        echo >> $LOGFILE
844        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
845      get_fortran_c_namemangling      get_fortran_c_namemangling
846      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
847  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 794  void FC_NAMEMANGLE(sigreg) (int * aip) Line 873  void FC_NAMEMANGLE(sigreg) (int * aip)
873      return;      return;
874  }  }
875  EOF  EOF
876      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
877        echo $COMM >> $LOGFILE
878        $COMM >> $LOGFILE 2>&1
879      RET_C=$?      RET_C=$?
880      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
881        program hello        program hello
# Line 804  EOF Line 885  EOF
885        call sigreg(anint)        call sigreg(anint)
886        end        end
887  EOF  EOF
888      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
889      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
891      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
898  }  }
899    
   
900  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
901        if test ! "x$HAVE_SETRLSTK" = x ; then
902            return
903        fi
904        echo >> $LOGFILE
905        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
906      get_fortran_c_namemangling      get_fortran_c_namemangling
907      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
908  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 835  void FC_NAMEMANGLE(setrlstk) () Line 918  void FC_NAMEMANGLE(setrlstk) ()
918      return;      return;
919  }  }
920  EOF  EOF
921      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
922        echo $COMM >> $LOGFILE
923        $COMM >> $LOGFILE 2>&1
924      RET_C=$?      RET_C=$?
925      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
926        program hello        program hello
# Line 843  EOF Line 928  EOF
928        call setrlstk()        call setrlstk()
929        end        end
930  EOF  EOF
931      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
932      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
934      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
935      RETVAL=$?      RETVAL=$?
936      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
937          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
938      fi      fi
939      rm -f genmake_tc*      rm -f genmake_tc*
940        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
941  }  }
942    
   
943  check_HAVE_STAT()  {  check_HAVE_STAT()  {
944        echo >> $LOGFILE
945        echo "running: check_HAVE_STAT()" >> $LOGFILE
946      get_fortran_c_namemangling      get_fortran_c_namemangling
947      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
948  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 879  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 963  void FC_NAMEMANGLE(tfsize) ( int *nbyte
963          *nbyte = -1;          *nbyte = -1;
964  }  }
965  EOF  EOF
966      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
967        echo $COMM >> $LOGFILE
968        $COMM >> genmake_tc.log 2>&1
969      RET_C=$?      RET_C=$?
970      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
971        program hello        program hello
# Line 888  EOF Line 974  EOF
974        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
975        end        end
976  EOF  EOF
977      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
978      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
979      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
980      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
981      RETVAL=$?      RETVAL=$?
982      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
983          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
984      fi      fi
985      rm -f genmake_tc*      rm -f genmake_tc*
986        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
987  }  }
988    
   
989  check_netcdf_libs()  {  check_netcdf_libs()  {
990      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
991          return          return
992      fi      fi
993      echo >> genmake_warnings      echo >> $LOGFILE
994      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
995      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
996        program fgennc        program fgennc
997  #include "netcdf.inc"  #include "netcdf.inc"
998  EOF  EOF
999      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1000          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1001      fi     #fi
1002      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1003        integer iret, ncid, xid        integer iret, ncid, xid
1004        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 926  EOF Line 1009  EOF
1009        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010        end        end
1011  EOF  EOF
1012      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1013      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1014      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1015      RET_CPP=f      RET_CPP=f
1016      COMM="$CPP $DEFINES $INCLUDES genmake_tnc.F"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1017      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
1018      $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t      eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
1019      if test "x$RET_CPP" = xf ; then      if test "x$RET_CPP" = xf ; then
1020          echo "  WARNING: CPP failed to pre-process the netcdf test." \          echo "  WARNING: CPP failed to pre-process the netcdf test." \
1021              >> genmake_tnc.log              >> genmake_tnc.log
# Line 940  EOF Line 1023  EOF
1023              >> genmake_tnc.log              >> genmake_tnc.log
1024      fi      fi
1025      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log      echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1026      echo "  &&  $LINK -o genmake_tnc.o $LIBS" >> genmake_tnc.log      echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1027      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1028          &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1029      RET_COMPILE=$?      RET_COMPILE=$?
1030      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1031    
1032      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1033      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 955  EOF Line 1038  EOF
1038    
1039      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1040          HAVE_NETCDF=t          HAVE_NETCDF=t
1041            echo "check_netcdf: successful" >> $LOGFILE
1042      else      else
1043          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1044          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1045          echo "$CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1046          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1047          echo " &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1048          $CPP $DEFINES $INCLUDES genmake_tnc.F > genmake_tnc.$FS 2>/dev/null  \          cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1049              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1050              &&  $LINK -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1051          RET_COMPILE=$?          RET_COMPILE=$?
1052          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1053            cat genmake_tnc.log >> $LOGFILE
1054          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1055              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1056              HAVE_NETCDF=t              HAVE_NETCDF=t
1057                echo "check_netcdf: successful" >> $LOGFILE
1058            else
1059            # try again with "-lnetcdff" added to the libs
1060                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1061                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1062                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1063                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1064                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1065                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1066                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1067                RET_COMPILE=$?
1068                echo >> $LOGFILE
1069                cat genmake_tnc.log >> $LOGFILE
1070                if test "x$RET_COMPILE" = x0 ; then
1071                    LIBS="$LIBS -lnetcdff -lnetcdf"
1072                    HAVE_NETCDF=t
1073                    echo "check_netcdf: successful" >> $LOGFILE
1074                fi
1075          fi          fi
1076      fi      fi
1077      rm -f genmake_tnc*      rm -f genmake_tnc*
1078        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1079  }  }
1080    
1081    check_lapack_libs()  {
1082        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1083            return
1084        fi
1085        echo >> $LOGFILE
1086        echo "running: check_lapack_libs()" >> $LOGFILE
1087        cat <<EOF > genmake_tla.F
1088          program fgenla
1089          integer info
1090          integer ipiv( 2 )
1091          double precision ab( 4, 2 ), b( 2 )
1092          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1093          data b / 1., 1. /
1094          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1095          IF (info .NE. 0) write(*,*) 'Error:', info
1096          write(*,*) b
1097          end
1098    EOF
1099        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1100        cat genmake_tla.F >> genmake_tla.log
1101        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1102        RET_CPP=f
1103        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1104        echo "$COMM" >> genmake_tla.log
1105        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1106        if test "x$RET_CPP" = xf ; then
1107            echo "  WARNING: CPP failed to pre-process the lapack test." \
1108                >> genmake_tla.log
1109            echo "    Please check that \$INCLUDES is properly set." \
1110                >> genmake_tla.log
1111        fi
1112        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1113        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1114        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1115            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1116        RET_COMPILE=$?
1117        cat genmake_tla.log >> $LOGFILE
1118    
1119        # test program execution not always possible (see check_netcdf_libs)
1120        #
1121        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1122        #RETVAL=$?
1123        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1124    
1125        if test "x$RET_COMPILE" = x0 ; then
1126            HAVE_LAPACK=t
1127            echo "check_lapack: successful" >> $LOGFILE
1128        else
1129            # try again with "-llapack" added to the libs
1130            echo "==> try again with added '-llapack'" > genmake_tla.log
1131            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1132            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1133            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1134            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1135                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1136                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1137            RET_COMPILE=$?
1138            echo >> $LOGFILE
1139            cat genmake_tla.log >> $LOGFILE
1140            if test "x$RET_COMPILE" = x0 ; then
1141                LIBS="$LIBS -llapack"
1142                HAVE_LAPACK=t
1143                echo "check_lapack: successful" >> $LOGFILE
1144            else
1145            # try again with "-lf77blas -lcblas" added to the libs
1146                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1147                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1148                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1149                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1150                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1151                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1152                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1153                RET_COMPILE=$?
1154                echo >> $LOGFILE
1155                cat genmake_tla.log >> $LOGFILE
1156                if test "x$RET_COMPILE" = x0 ; then
1157                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1158                    HAVE_LAPACK=t
1159                    echo "check_lapack: successful" >> $LOGFILE
1160                else
1161                # try again with "-latlas" added to the libs
1162                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1167                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1168                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169                    RET_COMPILE=$?
1170                    echo >> $LOGFILE
1171                    cat genmake_tla.log >> $LOGFILE
1172                    if test "x$RET_COMPILE" = x0 ; then
1173                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174                        HAVE_LAPACK=t
1175                        echo "check_lapack: successful" >> $LOGFILE
1176                    fi
1177                fi
1178            fi
1179        fi
1180        rm -f genmake_tla*
1181        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182    }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224  ###############################################################################  ###############################################################################
1225  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 997  ENABLE= Line 1242  ENABLE=
1242  DISABLE=  DISABLE=
1243  # MAKEFILE=  # MAKEFILE=
1244  # MAKEDEPEND=  # MAKEDEPEND=
1245  PDEPEND=  PKG_DEPEND=
1246  DUMPSTATE=t  PKG_GROUPS=
1247  PDEFAULT=  DUMPSTATE=f
1248  OPTFILE=  OPTFILE=
1249  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1250  FFLAGS=  FFLAGS=
1251  FOPTIM=  FOPTIM=
1252    FEXTRAFLAGS=
1253    USE_EXTENDED_SRC=
1254    EXTENDED_SRC_FLAG=
1255    GET_FC_VERSION=
1256  CFLAGS=  CFLAGS=
1257  KFLAGS1=  KFLAGS1=
1258  KFLAGS2=  KFLAGS2=
# Line 1014  NOOPTFILES= Line 1263  NOOPTFILES=
1263  NOOPTFLAGS=  NOOPTFLAGS=
1264  MPI=  MPI=
1265  MPIPATH=  MPIPATH=
1266    OMP=
1267    OMPFLAG=
1268    USE_R4=
1269  TS=  TS=
1270  PAPIS=  PAPIS=
1271    PCLS=
1272  FOOLAD=  FOOLAD=
1273  PAPI=  PAPI=
1274    PCL=
1275  HPMT=  HPMT=
1276  GSL=  GSL=
1277    DEVEL=
1278  HAVE_TEST_L=  HAVE_TEST_L=
1279    
1280    # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1284  HAVE_SYSTEM=  HAVE_SYSTEM=
1285  HAVE_FDATE=  HAVE_FDATE=
1286  FC_NAMEMANGLE=  FC_NAMEMANGLE=
1287  HAVE_CLOC=  HAVE_CLOC=
1288  HAVE_SETRLSTK=  # HAVE_SETRLSTK=
1289  HAVE_STAT=  HAVE_STAT=
1290  HAVE_NETCDF=  HAVE_NETCDF=
1291  HAVE_ETIME=  HAVE_ETIME=
1292  IGNORE_TIME=  IGNORE_TIME=
1293    HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
# Line 1039  SOURCEDIRS= Line 1299  SOURCEDIRS=
1299  INCLUDEDIRS=  INCLUDEDIRS=
1300  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1301    
1302    #- local config file
1303    gm_local="genmake_local"
1304    
1305  G2ARGS=  G2ARGS=
1306  BASH=  BASH=
1307  PWD=`pwd`  PWD=`pwd`
# Line 1054  MACHINE=`uname -a` Line 1317  MACHINE=`uname -a`
1317  EXECUTABLE=  EXECUTABLE=
1318  EXEHOOK=  EXEHOOK=
1319  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1320  IEEE=  IEEE=
1321  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1322      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1075  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="FC CPP IEEE TS PAPIS PAPI HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349    
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1364    
1365  cat <<EOF  cat <<EOF
1366    
1367  GENMAKE :  GENMAKE :
1368    
1369  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1370  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1371    or for more detail see the Developer's HOWTO manual at:
1372    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1373    
1374  EOF  EOF
1375    
1376    LOGFILE="genmake.log"
1377    #- clean-up previous genmake logfiles:
1378    rm -f genmake_state genmake_*optfile $LOGFILE
1379    
1380  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 for i in . $MODS ; do  
     if test -r $i/$gm_local ; then  
         . $i/$gm_local  
         break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1381    
1382  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1383  #parse_options  #parse_options
1384  ac_prev=  ac_prev=
1385  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1146  for ac_option in "$@" ; do Line 1392  for ac_option in "$@" ; do
1392          ac_prev=          ac_prev=
1393          continue          continue
1394      fi      fi
1395        
1396      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397        
1398      case $ac_option in      case $ac_option in
1399            
1400          -help | --help | -h | --h)          -help | --help | -h | --h)
1401              usage ;;              usage ;;
1402            
1403          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1404              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1405          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1406              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1407          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1408              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1409            
1410          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1411              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1412          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1414            
1415          -pdepend | --pdepend)          -pdepend | --pdepend)
1416              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1417          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1418              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1419            
1420          -pdefault | --pdefault)          -pgroups | --pgroups)
1421              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1422          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1423              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1424            
1425          -make | --make | -m | --m)          -make | --make | -m | --m)
1426              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1427          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1428              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1429            
1430          -bash | --bash)          -bash | --bash)
1431              ac_prev=BASH ;;              ac_prev=BASH ;;
1432          -bash=* | --bash=*)          -bash=* | --bash=*)
1433              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1434            
1435          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1436              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1437          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1438              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1439            
1440          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1441              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1442          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1443              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1444            
1445          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1447              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1448              echo              echo
1449              usage              usage
1450              ;;              ;;
1451            
1452          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1453              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1454          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1456            
1457          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1458              ac_prev=MODS ;;              ac_prev=MODS ;;
1459          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1460              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1461            
1462          -disable | --disable)          -disable | --disable)
1463              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1464          -disable=* | --disable=*)          -disable=* | --disable=*)
1465              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1466            
1467          -enable | --enable)          -enable | --enable)
1468              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1469          -enable=* | --enable=*)          -enable=* | --enable=*)
1470              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1471            
1472          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1473              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1474          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1232  for ac_option in "$@" ; do Line 1478  for ac_option in "$@" ; do
1478  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1479  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1480  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1481            
1482          -cc | --cc)          -cc | --cc)
1483              ac_prev=CC ;;              ac_prev=CC ;;
1484          -cc=* | --cc=*)          -cc=* | --cc=*)
1485              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1486            
1487          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1488              ac_prev=FC ;;              ac_prev=FC ;;
1489          -fc=* | --fc=*)          -fc=* | --fc=*)
1490              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1491            
1492          -fs | --fs)          -fs | --fs)
1493              ac_prev=FS ;;              ac_prev=FS ;;
1494          -fs=* | --fs=*)          -fs=* | --fs=*)
1495              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1496            
1497          -fs90 | --fs90)          -fs90 | --fs90)
1498              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1499          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1500              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1501            
1502            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503                USE_R4=true ;;
1504    
1505          -ieee | --ieee)          -ieee | --ieee)
1506              IEEE=true ;;              IEEE=true ;;
1507          -noieee | --noieee)          -noieee | --noieee)
1508              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509            -devel | --devel)
1510                IEEE=true ; DEVEL=true ;;
1511            -gsl | --gsl)
1512                GSL=true ;;
1513    
1514          -ts | --ts)          -ts | --ts)
1515              TS=true ;;              TS=true ;;
1516          -papis | --papis)          -papis | --papis)
1517              PAPIS=true ;;              PAPIS=true ;;
1518            -pcls | --pcls)
1519                PCLS=true ;;
1520          -foolad | --foolad)          -foolad | --foolad)
1521              FOOLAD=true ;;              FOOLAD=true ;;
1522          -papi | --papi)          -papi | --papi)
1523              PAPI=true ;;              PAPI=true ;;
1524            -pcl | --pcl)
1525                PCL=true ;;
1526          -hpmt | --hpmt)          -hpmt | --hpmt)
1527              HPMT=true ;;              HPMT=true ;;
1528    
         -gsl | --gsl)  
             GSL=true ;;  
   
1529          -mpi | --mpi)          -mpi | --mpi)
1530              MPI=true ;;              MPI=true ;;
1531          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1532              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1533              MPI=true ;;              MPI=true ;;
1534            
1535  #       -jam | --jam)          -omp | --omp)
1536  #           JAM=1 ;;              OMP=true ;;
1537  #       -nojam | --nojam)          -omp=* | --omp=*)
1538  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1539                        OMP=true ;;
1540    
1541          -ds | --ds)          -ds | --ds)
1542              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1543            
1544            -extra_flag | --extra_flag)
1545                ac_prev=FEXTRAFLAGS ;;
1546            -extra_flag=* | --extra_flag=*)
1547                FEXTRAFLAGS=$ac_optarg ;;
1548    
1549          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1550              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1551          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1295  for ac_option in "$@" ; do Line 1555  for ac_option in "$@" ; do
1555              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1556          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1557              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1558            
1559          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1561    
# Line 1306  for ac_option in "$@" ; do Line 1566  for ac_option in "$@" ; do
1566              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1567              usage              usage
1568              ;;              ;;
1569            
1570          *)          *)
1571              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575      esac      esac
1576        
1577  done  done
1578    
1579    #TMP=./genmk_$$
1580    #- try to put temporary files in system-local /tmp dir
1581    TMP=/tmp/genmk_$$
1582    touch $TMP ; retVal=$?
1583    if [ $retVal -eq 0 ] ; then
1584      if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1585    else
1586      TMP=./genmk_$$
1587    fi
1588    rm -f $TMP
1589    #echo "  temp files: $TMP.*"
1590    
1591    printf "  getting local config information:  "
1592    if test -f $gm_local ; then
1593        echo "using $gm_local"
1594        . $gm_local
1595    else
1596        echo "none found"
1597    fi
1598    
1599  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1600      echo      echo
1601      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1602      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1603      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1604      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1605        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1606        echo "WARNING: ignore \"./.genmakerc\" and continue."
1607      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1608  fi  fi
1609    
1610  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
1611  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1612      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1613      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1614          ROOTDIR=".."          ROOTDIR=".."
1615      else      else
1616          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1617              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1618                  ROOTDIR=$d                  ROOTDIR=$d
1619                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1620                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1621                  break                  break
1622              fi              fi
1623          done          done
# Line 1357  if test ! -d ${ROOTDIR} ; then Line 1635  if test ! -d ${ROOTDIR} ; then
1635  fi  fi
1636    
1637  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1638  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1639      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1640        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1641    #-  remove ./BUILD_INFO.h file if older than version_file
1642        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1643            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1644            rm -f ./BUILD_INFO.h
1645        fi
1646  fi  fi
1647    
1648  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1649      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1650  fi  fi
1651    
1652  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1653  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1654      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1655          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1656          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1657          find_possible_configs          find_possible_optfile
1658      else      else
1659          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1660      fi      fi
# Line 1385  if test "x$OPTFILE" != xNONE ; then Line 1669  if test "x$OPTFILE" != xNONE ; then
1669              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1670              exit 1              exit 1
1671          fi          fi
1672          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1673              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1674          fi          fi
1675      else      else
# Line 1394  if test "x$OPTFILE" != xNONE ; then Line 1678  if test "x$OPTFILE" != xNONE ; then
1678      fi      fi
1679  fi  fi
1680    
1681  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1682  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1683      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1684          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1412  if test "x${AD_OPTFILE}" != xNONE ; then Line 1696  if test "x${AD_OPTFILE}" != xNONE ; then
1696              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1697              exit 1              exit 1
1698          fi          fi
1699          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1700              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1701          fi          fi
1702      else      else
# Line 1440  Error: no Fortran compiler: please speci Line 1724  Error: no Fortran compiler: please speci
1724  EOF  EOF
1725      exit 1      exit 1
1726  fi  fi
1727    if test "x$GET_FC_VERSION" != x ; then
1728      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1729      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1730      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1731      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1732      if test -s genmake_fc_vers1 ; then
1733        cat genmake_fc_vers1 >> $LOGFILE
1734      else
1735        cat genmake_fc_vers2 >> $LOGFILE
1736      fi
1737      echo "<-- compiler version ----" >> $LOGFILE
1738      rm -f genmake_fc_vers1 genmake_fc_vers2
1739    fi
1740    
1741  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1742      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1743  fi  fi
1744    
1745  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1746      LINK=$FC      LINK=$FC
1747  fi  fi
# Line 1457  if test "x$MAKE" = x ; then Line 1749  if test "x$MAKE" = x ; then
1749      MAKE="make"      MAKE="make"
1750  fi  fi
1751  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1752      CPP=cpp      CPP="cpp -traditional -P"
1753  fi  fi
1754  #EH3 === UGLY ===  #EH3 === UGLY ===
1755  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1484  EOF Line 1776  EOF
1776  else  else
1777      rm -f test_cpp      rm -f test_cpp
1778  fi  fi
1779    
1780  look_for_makedepend  look_for_makedepend
1781    
1782    #  Check that soft-link command is set and usable
1783  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1784      LN="ln -s"      LN="ln -s"
1785  fi  fi
# Line 1494  RETVAL=$? Line 1789  RETVAL=$?
1789  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1790      cat <<EOF 1>&2      cat <<EOF 1>&2
1791    
1792  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1793    command in the optfile.    command in the optfile.
1794    
1795  EOF  EOF
# Line 1512  check_for_broken_Ff Line 1807  check_for_broken_Ff
1807    
1808  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1809        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1810        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1811    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1812    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1813    fi
1814    if test ! "x$OMP" = x ; then
1815          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1816          FFLAGS="$FFLAGS $OMPFLAG"
1817          F90FLAGS="$F90FLAGS $OMPFLAG"
1818          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1819    fi
1820    
1821    if test ! "x$USE_R4" = x ; then
1822          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1823          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1824  fi  fi
1825    
1826  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1827        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1828        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1829              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1830        else        else
1831              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1832        fi        fi
1833          PACKAGES="$PACKAGES showflops"
1834  fi  fi
1835  if test ! "x$PAPIS" = x ; then  if test ! "x$PAPIS" = x ; then
1836        echo "  Turning on PAPI flop summary per timestep"        echo "  Turning on PAPI flop summary per timestep"
# Line 1533  if test ! "x$PAPIS" = x ; then Line 1842  if test ! "x$PAPIS" = x ; then
1842        fi        fi
1843        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1844        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1845          PACKAGES="$PACKAGES showflops"
1846    fi
1847    if test ! "x$PCLS" = x ; then
1848          echo "  Turning on PCL counter summary per timestep"
1849          echo "  Please make sure PCLINC, PCLLIB are defined"
1850          if test ! "x$FOOLAD" = x ; then
1851                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1852          else
1853                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1854          fi
1855          INCLUDES="$INCLUDES $PCLINC"
1856          LIBS="$LIBS $PCLLIB"
1857          PACKAGES="$PACKAGES showflops"
1858  fi  fi
1859  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1860        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
# Line 1540  if test ! "x$PAPI" = x ; then Line 1862  if test ! "x$PAPI" = x ; then
1862            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1863        else        else
1864            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1865            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1866            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1867            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1868            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
1869        fi        fi
1870  fi  fi
1871    if test ! "x$PCL" = x ; then
1872          if test ! "x$PCLS" = x ; then
1873              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1874              echo "  Sticking with PCL flop summary per timestep!"
1875          else
1876              echo "  Turning on performance analysis with PCL"
1877              echo "  Please make sure PCLINC, PCLLIB are defined"
1878              DEFINES="$DEFINES -DUSE_PCL"
1879              INCLUDES="$INCLUDES $PCLINC"
1880              LIBS="$LIBS $PCLLIB"
1881          fi
1882    fi
1883  if test ! "x$HPMT" = x ; then  if test ! "x$HPMT" = x ; then
1884        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1885            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1886            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1887        else        else
1888            if test ! "x$PCL" = x ; then
1889              echo "  PCL and the HPM Toolkit cannot co-exist!"
1890              echo "  Sticking with PCL!"
1891            else
1892            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1893            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1894            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1895            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1896            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1897            fi
1898        fi        fi
1899  fi  fi
1900  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1565  if test ! "x$GSL" = x ; then Line 1904  if test ! "x$GSL" = x ; then
1904        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1905        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1906  fi  fi
1907    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1908    if test ! "x$USE_EXTENDED_SRC" = x ; then
1909          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1910          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1911    fi
1912    
1913  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1914  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1631  rm -f genmake_tcomp* Line 1975  rm -f genmake_tcomp*
1975  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1976  check_HAVE_CLOC  check_HAVE_CLOC
1977  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1978        DEFINES="$DEFINES -DHAVE_CLOC"
1979      echo "yes"      echo "yes"
1980  else  else
1981      echo "no"      echo "no"
# Line 1644  rm -f genmake_t* Line 1989  rm -f genmake_t*
1989    
1990  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1991  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1992  if test "x$HAVE_SETRLSTK" != x ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1993        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1994      echo "yes"      echo "yes"
1995  else  else
1996      echo "no"      echo "no"
# Line 1653  rm -f genmake_t* Line 1999  rm -f genmake_t*
1999    
2000  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
2001  check_HAVE_SIGREG  check_HAVE_SIGREG
2002  if test "x$HAVE_SIGREG" != x ; then  if test "x$HAVE_SIGREG" = xt ; then
2003        DEFINES="$DEFINES -DHAVE_SIGREG"
2004      echo "yes"      echo "yes"
2005  else  else
2006      echo "no"      echo "no"
# Line 1663  rm -f genmake_t* Line 2010  rm -f genmake_t*
2010  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
2011  check_HAVE_STAT  check_HAVE_STAT
2012  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2013        DEFINES="$DEFINES -DHAVE_STAT"
2014      echo "yes"      echo "yes"
2015  else  else
2016      echo "no"      echo "no"
# Line 1672  rm -f genmake_t* Line 2020  rm -f genmake_t*
2020  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2021  check_netcdf_libs  check_netcdf_libs
2022  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2023        DEFINES="$DEFINES -DHAVE_NETCDF"
2024        echo "yes"
2025    else
2026        echo "no"
2027    fi
2028    
2029    printf "  Can we create LAPACK-enabled binaries...  "
2030    check_lapack_libs
2031    if test "x$HAVE_LAPACK" != x ; then
2032        DEFINES="$DEFINES -DHAVE_LAPACK"
2033      echo "yes"      echo "yes"
2034  else  else
2035      echo "no"      echo "no"
2036  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2037    
2038    printf "  Can we call FLUSH intrinsic subroutine...  "
2039    check_HAVE_FLUSH
2040    if test "x$HAVE_FLUSH" = xt ; then
2041        DEFINES="$DEFINES -DHAVE_FLUSH"
2042        echo "yes"
2043    else
2044        echo "no"
2045    fi
2046    
2047    DEFINES="$DEFINES $IGNORE_TIME"
2048  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2049      build_embed_encode      build_embed_encode
2050  fi  fi
2051  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2052      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2053    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2054  fi  fi
2055    
   
2056  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2057  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2058  for d in $MODS ; do  for d in $MODS ; do
2059      if test ! -d $d ; then      if test ! -d $d ; then
2060          echo          echo
2061          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2062          exit 1          exit 1
2063      else      else
2064          printf " $d"          printf "$d "
2065          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2066          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2067      fi      fi
2068  done  done
2069  echo  echo
2070    
2071  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2072      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2073  fi  #fi
2074    
2075  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2076      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1743  ERROR: neither of the two default script Line 2110  ERROR: neither of the two default script
2110      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2111      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2112    
2113    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2114    working version of this script.    working version of this script.
2115    
2116  EOF  EOF
# Line 1755  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2122  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2122    
2123  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2124    
2125    #  Set Standard Code Directories:
2126    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2127        STANDARDDIRS="eesupp model"
2128    fi
2129    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2130    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2131    ckM=$?
2132    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2133    ckE=$?
2134    if test $ckM = 0 -a $ckE = 1 ; then
2135        STANDARDDIRS="$STANDARDDIRS eesupp"
2136    fi
2137    
2138  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2139  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2140  #  they appear as regular source code  #  they appear as regular source code
2141  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2142      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2143      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2144        ) > make_eesupp.errors 2>&1
2145      RETVAL=$?      RETVAL=$?
2146      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2147          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1771  if test -r $ROOTDIR"/eesupp/src/Makefile Line 2152  if test -r $ROOTDIR"/eesupp/src/Makefile
2152      fi      fi
2153  fi  fi
2154    
2155  #same for exch2  #same for pkg/exch2 and pkg/regrid
2156  if test -r $ROOTDIR"/pkg/exch2/Makefile" ; then  for pdir in exch2 regrid ; do
2157      echo "  Making source files in exch2 from  templates"      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2158      ( cd $ROOTDIR"/pkg/exch2/" && $MAKE ) > make_exch2.errors 2>&1          echo "  Making source files in pkg/${pdir} from templates"
2159      RETVAL=$?          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2160      if test "x${RETVAL}" = x0 ; then          ) > make_${pdir}.errors 2>&1
2161          rm -f make_exch2.errors          RETVAL=$?
2162      else          if test "x${RETVAL}" = x0 ; then
2163          echo "Error: problem encountered while building source files in exch2:"              rm -f make_${pdir}.errors
2164          cat make_exch2.errors 1>&2          else
2165          exit 1              echo "Error: problem encountered while building source files in pkg/${pdir}:"
2166                cat make_${pdir}.errors 1>&2
2167                exit 1
2168            fi
2169      fi      fi
2170  fi  done
2171    
2172  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2173  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2174      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2175      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2176          PDEPEND=$tmp  fi
2177      else  if  test "x${PKG_DEPEND}" = x ; then
2178          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2179          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2180  else  else
2181      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2182          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2183          exit 1          exit 1
2184      fi      fi
2185        echo "  getting package dependency info from  $PKG_DEPEND"
2186    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2187        get_pdepend_list $PKG_DEPEND
2188  fi  fi
2189  echo "  getting package dependency info from  $PDEPEND"  
2190  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2191  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2192  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2193      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2194      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2195  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2196  if test ! "x${RETVAL}" = x0 ; then  fi
2197      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2198      exit 1          echo "Warning:  No package groups information was specified."
2199            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2200    else
2201        if test ! -r ${PKG_GROUPS} ; then
2202            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2203            exit 1
2204        fi
2205        echo "  getting package groups info from      $PKG_GROUPS"
2206  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2207    
2208  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2209  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2210  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2211  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2212      for i in "." $MODS ; do      for i in "." $MODS ; do
2213          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2214                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2215                  break                  break
2216          fi          fi
2217      done      done
2218  fi  fi
2219  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2220      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2221  fi      if test "x${PKG_GROUPS}" = x ; then
2222  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2223      echo "    default packages file disabled"          exit 1
2224        fi
2225  else  else
2226      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2227          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2228            exit 1
2229      else      else
2230          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2231          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2232          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2233          RETVAL=$?          RETVAL=$?
2234          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2235              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2236              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2237              exit 1              exit 1
2238          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2239      fi      fi
2240  fi  fi
2241    for i in $pkg_list ; do
2242        PACKAGES="$PACKAGES $i"
2243    done
2244    echo     "    before group expansion packages are:$PACKAGES"
2245    if test "x${PKG_GROUPS}" != x ; then
2246        RET=1
2247        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2248        echo "    after group expansion packages are: $PACKAGES"
2249    fi
2250    
2251  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2252    echo "" > $TMP.pack
2253  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2254      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2255  done  done
2256  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2257      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2258      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2259  done  done
# Line 1876  for p in $PACKAGES ; do Line 2271  for p in $PACKAGES ; do
2271  done  done
2272  PACKAGES="$pack"  PACKAGES="$pack"
2273  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2274  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2275  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2276  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2277  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2278      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2279      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2280          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2281          exit 1          exit 1
2282      fi      fi
2283      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2284  done  done
2285  PACKAGES=  PACKAGES=
2286  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2287      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2288  done  done
2289  rm -f ./.tmp_pack  rm -f $TMP.pack
2290  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2291    
2292  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2293  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2294  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2295  RETVAL=$?  mnc_in=$?
2296  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2297      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2298          cat <<EOF          cat <<EOF
   
2299  *********************************************************************  *********************************************************************
2300  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2301    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2302    
2303    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2304    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2305         NetCDF library to link against.         NetCDF library to link against.
2306    
2307    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2308  *********************************************************************  *********************************************************************
   
2309  EOF  EOF
2310          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2311          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2312      else      else
2313          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2314          RETVAL=$?          DISABLE="$DISABLE mnc"
2315          if test "x${RETVAL}" = x0 ; then      fi
2316              rm -f make_mnc.errors  else
2317          else      # we have NetCDF, we try to build MNC template files
2318              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2319              cat make_mnc.errors 1>&2      RETVAL=$?
2320        if test "x${RETVAL}" = x0 ; then
2321            rm -f make_mnc.errors
2322        else
2323            echo "Error: problem encountered while building source files in pkg/mnc:"
2324            cat make_mnc.errors 1>&2
2325            if test "x$mnc_in" = x0 ; then
2326              exit 1              exit 1
2327            else
2328                DISABLE="$DISABLE mnc"
2329          fi          fi
2330      fi      fi
2331  fi  fi
2332    
2333  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2334  ck=  #  then delete profiles from the list of available packages.
2335  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2336        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2337        RETVAL=$?
2338        if test "x$RETVAL" = x0 ; then
2339            cat <<EOF
2340    *********************************************************************
2341    WARNING: the "profiles" package was enabled but tests failed to
2342      compile NetCDF applications.  Please check that:
2343    
2344      1) NetCDF is correctly installed for this compiler and
2345      2) the LIBS variable (within the "optfile") specifies the correct
2346           NetCDF library to link against.
2347    
2348      Due to this failure, the "profiles" package is now DISABLED.
2349    *********************************************************************
2350    EOF
2351            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2352            DISABLE="$DISABLE profiles"
2353        else
2354        #  this prevent to add profiles (due to pdepend rules) if not available
2355            DISABLE="$DISABLE profiles"
2356        fi
2357    fi
2358    
2359    #  Make sure the openad package is enabled if using OpenAD
2360    if test "x$OPENAD" != x ; then
2361        echo " $PACKAGES " | grep ' openad ' > /dev/null 2>&1
2362        RETVAL=$?
2363        if test "x$RETVAL" != x0 ; then
2364            cat <<EOF
2365    
2366    *********************************************************************
2367    ERROR: when generating an adjoint with OpenAD, the openad package
2368      must be enabled.  Please add it to packages.conf.
2369    *********************************************************************
2370    
2371    EOF
2372            exit 1
2373        fi
2374    fi
2375    
2376    if  test "x${PKG_DEPEND}" != x ; then
2377      echo "  applying package dependency rules"
2378      ck=
2379      while test "x$ck" != xtt ; do
2380      i=0      i=0
2381      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2382      rtot=$nname      rtot=$nname
2383      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2384    
2385          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2386          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1947  while test "x$ck" != xtt ; do Line 2392  while test "x$ck" != xtt ; do
2392                  pin="t"                  pin="t"
2393              fi              fi
2394          done          done
2395            #  or in the current $STANDARDDIRS list?
2396            for p in $STANDARDDIRS ; do
2397                if test "x$p" = "x$pname" ; then pin="t" ; fi
2398            done
2399    
2400          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2401          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 1969  while test "x$ck" != xtt ; do Line 2418  while test "x$ck" != xtt ; do
2418    
2419          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2420          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2421                #echo "   " $pname ": need to add :" $dname
2422              in_dis="f"              in_dis="f"
2423              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2424                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 1989  while test "x$ck" != xtt ; do Line 2439  while test "x$ck" != xtt ; do
2439          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2440          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2441              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2442              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2443              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2444              exit 1              exit 1
2445          fi          fi
2446          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2447          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2448      done      done
2449      ck=$ck"t"      ck=$ck"t"
2450  done    done
2451  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2452    fi
2453  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2454      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2455      if test -d $adr ; then      if test -d $adr ; then
# Line 2015  done Line 2466  done
2466    
2467  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2468  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2469  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2470  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2471  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2472  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2473  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2033  for n in $names ; do Line 2484  for n in $names ; do
2484          done          done
2485          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2486              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2487              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2488          fi          fi
2489      fi      fi
2490  done  done
# Line 2044  for i in $PACKAGES ; do Line 2495  for i in $PACKAGES ; do
2495  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2496    
2497  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2498      case $i in      case $i in
2499          aim_v23)          aim_v23)
2500              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2501              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2502              ;;              ;;
2503      esac      esac
# Line 2054  for i in $PACKAGES ; do Line 2505  for i in $PACKAGES ; do
2505    
2506  done  done
2507    
2508  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2509  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2510  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2511      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2512          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2091  for i in $spaths ; do Line 2539  for i in $spaths ; do
2539      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2540          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2541          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2542          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2543          for n in $names ; do          for n in $names ; do
2544              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2545          done          done
2546      fi      fi
2547      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2548      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2549          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2550          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2551  #**** not yet enabled ****  #**** not yet enabled ****
2552  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2553  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2113  fi Line 2561  fi
2561    
2562  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2563  #  compiler.  #  compiler.
2564  if test -f ./ad_files ; then  if test -f $TMP.adSrcFiles ; then
2565      rm -f ./ad_files      rm -f $TMP.adSrcFiles
2566  fi  fi
2567  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2568    touch $TMP.adSrcFiles
2569  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2570      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2571      for j in $list_files ; do      for j in $list_files ; do
2572          cat $i/$j >> ad_files          cat $i/$j >> $TMP.adSrcFiles
2573      done      done
2574  done  done
2575  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2576      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2577      mv -f ad_files_f ad_files      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2578  fi  fi
2579    
2580  echo  echo
# Line 2137  for i in $INCLUDEDIRS ; do Line 2586  for i in $INCLUDEDIRS ; do
2586      fi      fi
2587  done  done
2588    
2589  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2590      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2591      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2592      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2593      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2594            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
       
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
         exit -1  
2595      fi      fi
2596  fi  fi
2597    
2598  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2599  rm -rf .links.tmp  rm -rf $TMP.links
2600  mkdir .links.tmp  mkdir $TMP.links
2601  touch .links.tmp/foo  touch $TMP.links/foo
2602  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2603      echo      echo
2604      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2605      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2182  if test ! -r ".links.tmp/foo" ; then Line 2615  if test ! -r ".links.tmp/foo" ; then
2615      echo      echo
2616      exit 1      exit 1
2617  fi  fi
2618  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2619  echo "# This section creates symbolic links" > srclinks.tmp  
2620  echo "" >> srclinks.tmp  if test "x$OPENAD" != x ; then
2621  printf 'SRCFILES = '    > srclist.inc      OAD_DONT_COMPILE="/dev/null"
2622  printf 'CSRCFILES = '   > csrclist.inc      OAD_DONT_TRANSFORM="/dev/null"
2623  printf 'F90SRCFILES = ' > f90srclist.inc      OAD_KEEP_ORIGINAL="/dev/null"
2624  printf 'HEADERFILES = ' > hlist.inc      OAD_CB2M_FILES="/dev/null"
2625  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc      OADTOOLS="$TOOLSDIR/OAD_support"
2626        echo "  looking for dontCompile file:  "
2627        for i in "." $MODS ; do
2628            if test -r $i"/dontCompile" ; then
2629                OAD_DONT_COMPILE=$i"/dontCompile"
2630                echo "     found $OAD_DONT_COMPILE"
2631                break
2632            fi
2633        done
2634        echo "  looking for dontTransform file:  "
2635        for i in "." $MODS ; do
2636            if test -r $i"/dontTransform" ; then
2637                OAD_DONT_TRANSFORM=$i"/dontTransform"
2638                echo "     found $OAD_DONT_TRANSFORM"
2639                break
2640            fi
2641        done
2642        echo "  looking for keepOriginal file:  "
2643        for i in "." $MODS ; do
2644            if test -r $i"/keepOriginal" ; then
2645                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2646                echo "     found $OAD_KEEP_ORIGINAL"
2647                break
2648            fi
2649        done
2650        echo "  looking for cb2mFiles:  "
2651        for i in "." $MODS ; do
2652            if test -r $i"/cb2mFiles" ; then
2653                OAD_CB2M_FILES=$i"/cb2mFiles"
2654                echo "     found $OAD_CB2M_FILES"
2655                break
2656            fi
2657        done
2658        echo "   OpenAD exceptions:  "
2659    fi
2660    
2661    echo "# This section creates symbolic links" > $TMP.srclinks
2662    echo "" >> $TMP.srclinks
2663    printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2664    printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2665    printf 'C_SRC_FILES = '   > $TMP.csrclist
2666    printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2667    printf 'H_SRC_FILES = '   > $TMP.hsrclist
2668    printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2669  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2670  for d in $alldirs ; do  for d in $alldirs ; do
2671      deplist=      deplist=
2672      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2673      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2674        if test "x$OPENAD" != x ; then
2675            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2676        fi
2677      for sf in $sfiles ; do      for sf in $sfiles ; do
2678          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2679              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2680                  ignore_f=f                  ignore_f=f
2681                  case $d/$sf in                  case $d/$sf in
2682                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2683                          ignore_f=t                          ignore_f=t
2684                          ;;                          ;;
2685                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2686                          ignore_f=t                          ignore_f=t
2687                          ;;                          ;;
2688                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2689                          ignore_f=t                          ignore_f=t
2690                          ;;                          ;;
2691                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2692                          ignore_f=t                          ignore_f=t
2693                          ;;                          ;;
2694                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2695                          ignore_f=t                          ignore_f=t
2696                          ;;                          ;;
2697                    *)                    *)
2698                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2699                          #  ignore all soft-links                          #  ignore all soft-links
2700                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2701                              ignore_f=t                              ignore_f=t
2702                          else                          else
2703                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2704                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2705                          fi                          fi
2706                          ;;                          ;;
2707                  esac                  esac
2708                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2709                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2710                      case $extn in                      case $extn in
2711                          F)                        F)
2712                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> $TMP.F77srclist
2713                              printf " $sf" >> srclist.inc                          printf " $sf" >> $TMP.F77srclist
2714                              ;;                          if test "x$OPENAD" = x ; then
2715                          F90)                              basename=${sf%%.F}
2716                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2717                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2718                              ;;                                  echo    " \\"  >> $TMP.nonADF77srclist
2719                          c)                                  printf " $sf" >> $TMP.nonADF77srclist
2720                              echo    " \\"  >> csrclist.inc                              fi
2721                              printf " $sf" >> csrclist.inc                          else #- OpenAD case:
2722                              ;;                              basename=${sf%%.F}
2723                          h)                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2724                              echo    " \\"  >> hlist.inc                              if test -z "$isAD" ; then
2725                              printf " $sf" >> hlist.inc                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2726                              ;;                                  if test -z "$toBeIgnored" ; then
2727                          flow)                                      echo    " \\"  >> $TMP.nonADF77srclist
2728                              echo    " \\"  >> ad_flow_files.inc                                      printf " $sf" >> $TMP.nonADF77srclist
2729                              printf " $sf" >> ad_flow_files.inc                                  else
2730                              ;;                                      echo "    not to be compiled   :  $sf"
2731                      esac                                  fi
2732                  fi                              else # file is initially listed as an AD file we want to exclude it
2733                                     # or we want to retain the untransformed version
2734                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2735                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2736                                    if test -n "$notToBeTransformed"; then
2737                                        echo "    not to be transformed:  $sf"
2738                                    fi
2739                                    if test -n "$untransformedVersionToBeKept" ; then
2740                                        echo "    original to be kept  :  $sf"
2741                                    fi
2742                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2743                                        echo    " \\"  >> $TMP.nonADF77srclist
2744                                        printf " $sf" >> $TMP.nonADF77srclist
2745                                    fi
2746                                fi
2747                            fi
2748                            ;;
2749                        F90)
2750                            echo    " \\"  >> $TMP.F90srclist
2751                            printf " $sf" >> $TMP.F90srclist
2752                            ;;
2753                        c)
2754                            echo    " \\"  >> $TMP.csrclist
2755                            printf " $sf" >> $TMP.csrclist
2756                            ;;
2757                        h)
2758                            echo    " \\"  >> $TMP.hsrclist
2759                            printf " $sf" >> $TMP.hsrclist
2760                            ;;
2761                        flow)
2762                            echo    " \\"  >> $TMP.ad_flow_files
2763                            printf " $sf" >> $TMP.ad_flow_files
2764                            ;;
2765                       esac
2766                    fi
2767              fi              fi
2768          fi          fi
2769      done      done
2770      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2771          echo "" >> srclinks.tmp        if test "$d" != "." ; then
2772          echo "#  These files are linked from $d" >> srclinks.tmp          echo "" >> $TMP.srclinks
2773          echo "$deplist :" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2774          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2775    # We need to make sure that the link isn't already there.
2776    # This may happen when make thinks that a header file has to be "remade"
2777    # because a module it depends on has changed.  In this case we do nothing.
2778            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2779          fi
2780      fi      fi
2781  done  done
2782  rm -rf .links.tmp  rm -rf $TMP.links
2783  echo "" >> srclist.inc  echo "" >> $TMP.F77srclist
2784  echo "" >> csrclist.inc  echo "" >> $TMP.nonADF77srclist
2785  echo "" >> f90srclist.inc  echo "" >> $TMP.csrclist
2786  echo "" >> hlist.inc  echo "" >> $TMP.F90srclist
2787  echo "" >> ad_flow_files.inc  echo "" >> $TMP.hsrclist
2788    echo "" >> $TMP.ad_flow_files
2789    
2790    CMDLINE=$0
2791    for xx in "$@" ; do nw=`echo $xx | wc -w`
2792        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2793                            else CMDLINE="$CMDLINE '$xx'" ; fi
2794    done
2795    
2796  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2797      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2798  fi  fi
2799  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2800  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2277  echo "#    $MACHINE" >> $MAKEFILE Line 2802  echo "#    $MACHINE" >> $MAKEFILE
2802  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2803  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2804  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2805  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2806  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2807  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2808    
# Line 2288  EXE_SVD=$EXECUTABLE"_svd" Line 2813  EXE_SVD=$EXECUTABLE"_svd"
2813  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2814  #  #
2815  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2816  #  #
2817  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2818  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2819  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2299  cat >>$MAKEFILE <<EOF Line 2824  cat >>$MAKEFILE <<EOF
2824  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2825  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2826  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2827  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2828  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2829  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2308  cat >>$MAKEFILE <<EOF Line 2831  cat >>$MAKEFILE <<EOF
2831  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2832    
2833  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2834  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2835  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2836  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2837  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2838  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2839  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2840    OADTOOLS    = ${OADTOOLS}
2841    
2842  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2843  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2334  else Line 2858  else
2858      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2859  fi  fi
2860    
2861  #  Note: figure out some way to add Hyades JAM libraries here  # extract default cpp search path so we can pass it to makedepend
2862    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2863    
2864  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2865  # Unix ln (link)  # Unix ln (link)
2866  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2867  # Dependency generator  # Dependency generator
2868  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2869  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2357  LINK = ${LINK} ${LDADD} Line 2881  LINK = ${LINK} ${LDADD}
2881  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2882  # Includes for CPP  # Includes for CPP
2883  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2884    # default CPP includes for makedepend
2885    CPPINCLUDES = ${CPPINCLUDES}
2886  # Flags for KPP  # Flags for KPP
2887  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2888  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2889  # Optim./debug for FC  # Optim./debug for FC
2890  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2891  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2892  # Optim./debug for FC  # Optim./debug for FC
2893  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2894  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2895    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2896  # Flags for CC  # Flags for CC
2897  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2898  # Files that should not be optimized  # Files that should not be optimized
# Line 2373  NOOPTFILES = ${NOOPTFILES} Line 2900  NOOPTFILES = ${NOOPTFILES}
2900  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2901  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2902  LIBS = ${LIBS}  LIBS = ${LIBS}
2903  # Name of the Mekfile  # Name of the makefile
2904  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2905    # Name of the make program
2906    MAKE = ${MAKE}
2907    
2908  EOF  EOF
2909    
2910  cat srclist.inc       >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2911  cat csrclist.inc      >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2912  cat f90srclist.inc    >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2913  cat hlist.inc         >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2914  cat ad_flow_files.inc >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2915    cat $TMP.ad_flow_files   >> $MAKEFILE
2916    
2917    rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2918    
2919  echo >> $MAKEFILE  echo >> $MAKEFILE
2920  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2921  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2922  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2923    # hence the $FS and $FS90 here.
2924    # for fixed format f90 files we use ff90 or FF90 resp
2925    # but these are not expected to be the original source files
2926    
2927    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2928    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2929    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2930    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2931  echo >> $MAKEFILE  echo >> $MAKEFILE
2932  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2933  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2934    
2935  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2936    
2937  all: \$(EXECUTABLE)  all: fwd_exe_target
2938  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  fwd_exe_target:
2939            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2940            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2941            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2942            @-rm -f ad_config.template
2943            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2944    
2945    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2946          @echo Creating \$@ ...          @echo Creating \$@ ...
2947          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2948    
2949  depend:  depend:
2950          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2951          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2952          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2953          -rm -f makedepend.out          -rm -f makedepend.out
2954    
# Line 2409  lib: libmitgcmuv.a Line 2956  lib: libmitgcmuv.a
2956    
2957  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2958          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2959            ar d   libmitgcmuv.a main.o
2960    
2961  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2962    
2963  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2964    
2965    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2966    
2967  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2968          @printf 'running ... '          @printf 'running ... '
2969          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2970    
2971    # remove most of the files that "make" generates
2972  clean:  clean:
2973          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2974            -rm -rf *.o
2975            -rm -rf *.$FS *.flowdir
2976            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2977    
2978    # remove most of the files that "make" and "make depend" generate
2979  Clean:  Clean:
2980          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2981          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2982          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2983          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2984    
2985    # remove also the executable, files that "genmake2" generates (except Makefile)
2986    #         and output from a run (plus log files from testreport)
2987  CLEAN:  CLEAN:
2988          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2989            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2990            -rm -f $LOGFILE genmake_state genmake_*optfile
2991            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2992            -rm -rf mpi_headers mnc_test_*
2993          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2994          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2995          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2996          -rm -f \$(EXECUTABLE) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
2997          -rm -rf mnc_test_*          -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
2998            -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2999            -rm -f oad_cp.[0-9][0-9][0-9].?????
3000    
 #eh3 Makefile: makefile  
3001  makefile:  makefile:
3002          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
3003  cleanlinks:  cleanlinks:
3004          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
3005    
3006  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
3007  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3008          @echo Creating \$@ ...          @echo Creating \$@ ...
3009          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3010  AD_CONFIG.h:  AD_CONFIG.h:
3011          @echo Creating \$@ ...          @echo Creating \$@ ...
3012          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3013  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3014          @echo Creating \$@ ...          @echo Creating \$@ ...
3015          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2464  if test "x$EMBED_SRC" = xt ; then Line 3028  if test "x$EMBED_SRC" = xt ; then
3028    
3029  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
3030    
3031  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
3032  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3033          @echo Creating \$@ ...          @echo Creating \$@ ...
3034          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3035          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
3036          -gzip all_fF.tar          -gzip all_fF.tar
3037    
# Line 2485  cat >>$MAKEFILE <<EOF Line 3049  cat >>$MAKEFILE <<EOF
3049  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3050  ## %.o : %.F  ## %.o : %.F
3051    
3052    # C preprocessing and replacing the _d in constants:
3053    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3054    
3055  .F.$FS:  .F.$FS:
3056          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3057  .$FS.o:  .$FS.o:
3058          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3059    .F.o:
3060            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3061  .F90.$FS90:  .F90.$FS90:
3062          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3063    .FF90.f$FS90:
3064            \$(CPPCMD)  > \$@
3065  .$FS90.o:  .$FS90.o:
3066          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3067    .f$FS90.o:
3068            cp \$< \$(basename  \$<).f90
3069            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3070  .c.o:  .c.o:
3071          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3072    .flow.flowdir:
3073            \$(CPPCMD) > \$@
3074    
3075  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3076  .F.p:  .F.p:
3077          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3078  .p.$FS:  .p.$FS:
3079          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3080    
3081    EOF
3082    
3083  #=========================================  #=========================================
3084  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3085    #===  for TAMC/TAF  ======================
3086    
3087    if test "x$OPENAD" = x ; then
3088    
3089    cat >>$MAKEFILE <<EOF
3090    
3091  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3092  TAF            = ${TAF}  TAF            = ${TAF}
3093    
3094  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3095  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3096    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3097    
3098  EOF  EOF
3099    
# Line 2518  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF Line 3102  ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF
3102  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"  ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3103  for i in $ad_vars ; do  for i in $ad_vars ; do
3104      name=$i      name=$i
3105      t1="t2=\$"`echo $i`      t1="t2=\$"`echo "$i"`
3106      eval $t1      eval $t1
3107      printf "%-20s = " $name >> $MAKEFILE      printf "%-20s = " $name >> $MAKEFILE
3108      echo $t2 >> $MAKEFILE      echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3109  done  done
3110    
3111  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3112  echo >> $MAKEFILE  echo >> $MAKEFILE
3113  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3114  AD_FILES=`cat ad_files`  AD_FILES=`cat $TMP.adSrcFiles`
3115  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3116      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3117      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3118  done  done
3119  echo >> $MAKEFILE  echo >> $MAKEFILE
3120  rm -f ad_files  rm -f $TMP.adSrcFiles
3121    
3122  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3123    
3124  # ... AD ...  # ... AD ...
3125  adall: ad_taf  adall: ad_exe_target
3126  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3127  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3128    
3129  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_exe_target:
3130          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3131            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3132            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3133            @-rm -f ad_config.template
3134            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3135    
3136    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3137            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3138          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3139          -rm -f ad_config.template          @-rm -f ad_config.template
3140          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3141          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3142          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3143    
3144  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3145            @-rm -f ad_input_code_ad.$FS ; echo ''
3146          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3147            ls -l ad_input_code_ad.$FS
3148          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3149    
3150  adtafonly:  adtafonly:
3151          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3152            ls -l ad_input_code_ad.$FS
3153          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3154    
3155  ad_taf: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3156          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3157    
3158  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3159          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3160          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3161    
3162  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3163          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3164    
3165  adonlyfwd:  adonlyfwd:
3166          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3167    
3168  adtrick:  adtrick:
3169          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3170    
3171    adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3172    
3173  # ... FTL ...  # ... FTL ...
3174  ftlall: ftl_taf  ftlall: ftl_exe_target
3175  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3176  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3177    
3178  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3179          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3180          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3181          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3182          @make \$(F77FILES)          @-rm -f ad_config.template
3183          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3184          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3185    ftl_input_code.$FS: \$(AD_FILES)
3186            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3187            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3188            @-rm -f ad_config.template
3189            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3190            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3191            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3192    
3193  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3194            @-rm -f ftl_input_code_tl.$FS ; echo ''
3195          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3196          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          ls -l ftl_input_code_tl.$FS
3197            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3198    
3199  ftltafonly:  ftltafonly:
3200          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3201          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          ls -l ftl_input_code_tl.$FS
3202            cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3203    
3204  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3205          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3206    
3207  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3208          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3209          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3210    
3211  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3212          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3213    
3214  # ... SVD ...  # ... SVD ...
3215  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2626  svd_touch: Line 3231  svd_touch:
3231          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3232          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3233          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3234          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3235          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3236          -rm -f ftl_config.template          @-rm -f ad_config.template
3237    
3238  #=========================================  EOF
3239    
3240    fi
3241    
3242    #===  for OpenAD  ========================
3243    
3244    if test "x$OPENAD" != x ; then
3245    
3246    # ============ begin OpenAD specific section ==============
3247    
3248    cat >>$MAKEFILE <<EOF
3249    
3250    # all the source files linked from the various locations:
3251    ALL_LINKED_FILES= \
3252    \$(F77_SRC_FILES) \
3253    \$(C_SRC_FILES) \
3254    \$(H_SRC_FILES) \
3255    \$(F90_SRC_FILES) \
3256    \$(SPECIAL_FILES)
3257    
3258    ifndef OPENADROOT
3259      \$(error "Error:  environment variable OPENADROOT not defined!")
3260    endif
3261    
3262    ifndef XAIFSCHEMAROOT
3263      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3264    endif
3265    
3266    ifndef XAIFBOOSTERROOT
3267      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3268    endif
3269    
3270    EOF
3271    
3272    echo "  Add the source list for common block to module conversion "
3273    echo >> $MAKEFILE
3274    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3275    for i in `cat ${OAD_CB2M_FILES}` ; do
3276      echo    " \\" >> $MAKEFILE
3277      printf " $i" >> $MAKEFILE
3278    done
3279    echo >> $MAKEFILE
3280    
3281    echo "  Add the source list for AD code generation"
3282    echo >> $MAKEFILE
3283    printf "AD_FILES = " >> $MAKEFILE
3284    for i in `cat ${OAD_CB2M_FILES}` ; do
3285      echo    " \\" >> $MAKEFILE
3286      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3287    done
3288    AD_FILES=`cat $TMP.adSrcFiles`
3289    for i in $AD_FILES ; do
3290      basename=${i%%.f}
3291      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3292      if test -z "$toBeIgnored" ; then
3293        echo    " \\" >> $MAKEFILE
3294        printf " $i" >> $MAKEFILE
3295      fi
3296    done
3297    echo >> $MAKEFILE
3298    rm -f $TMP.adSrcFiles
3299    
3300    cat >>$MAKEFILE <<EOF
3301    
3302    adAll: \$(EXE_AD)
3303    .PHONY: adAll
3304    
3305    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3306    
3307    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3308    
3309    .PHONY: adDepend
3310    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3311            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3312            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3313            -rm -f makedepend.out
3314    
3315    OPENAD_SUPPORT_F90_SRC_FILES = \
3316    w2f__types.F90 \
3317    OAD_active.F90 \
3318    OAD_cp.F90 \
3319    OAD_rev.F90 \
3320    OAD_tape.F90 \
3321    revolve.F90
3322    
3323    OPENAD_SUPPORT_C_SRC_FILES = \
3324    iaddr.c \
3325    timeRatio.c
3326    
3327    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3328            cat \$^ > \$@
3329    
3330    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3331            cat \$^ > \$@
3332    
3333    f95_test.out: f95_test_mods.f90 f95_test.f90
3334            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3335            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3336    
3337    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3338    
3339    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3340    
3341    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3342    
3343    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3344            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3345    
3346    # create sources files modules from header files containing common blocks
3347    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3348            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3349    
3350    # create new header files with USE statements for the new modules made above
3351    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3352            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3353    
3354    # change the include directives of everybody to refer to  the new header files with the USE statements
3355    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3356            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3357    
3358    # makefile debug rule
3359    small_f: \$(CB2M_F90_PP_SRC_FILES)
3360    .PHONY: small_f
3361    
3362    ad_output.txt: \$(EXE_AD)
3363            @printf 'linking data files ... '
3364            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3365            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3366            @printf 'running ... '
3367            @./\$(EXE_AD) > \$@
3368    
3369    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3370            cat \$^ > \$@
3371    
3372    # canonicalizer
3373    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3374            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3375    
3376    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3377    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3378            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3379    
3380    # F -> WHIRL
3381    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3382            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3383    
3384    # WHIRL -> XAIF
3385    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3386            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3387    
3388    # XAIF -> XAIF'
3389    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3390            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3391    
3392    # XAIF' -> WHIRL'
3393    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3394            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3395    
3396    # WHIRL' -> F'
3397    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3398            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3399    
3400    # insert template directives
3401    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3402            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3403    
3404    PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3405    # postprocess F'
3406    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3407            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3408            # the target is a placeholder to trigger a single execution of the rule
3409            touch \$@
3410    # put this so make knows about the postprocessing output
3411    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3412    
3413    # link the XAIF schema files
3414    %.xsd:
3415            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3416    
3417    # link the support files:
3418    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3419            \$(LN) \${OADTOOLS}/\$@ .
3420    
3421    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3422    
3423    # ============ end OpenAD specific section ==============
3424    
3425  EOF  EOF
3426    
3427    fi
3428    
3429    #=========================================
3430    
3431  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3432      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3433  fi  fi
# Line 2660  for i in $NOOPTFILES ; do Line 3454  for i in $NOOPTFILES ; do
3454  done  done
3455    
3456  echo "  Add rules for links"  echo "  Add rules for links"
3457  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3458  rm -f srclinks.tmp  rm -f $TMP.srclinks
3459    
3460  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3461  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 2669  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3463  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3463  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3464    
3465  # Create special header files  # Create special header files
3466  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3467  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3468      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3469  else  else
# Line 2683  else Line 3477  else
3477      fi      fi
3478  fi  fi
3479  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3480      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3481  fi  fi
3482    
   
3483  #  Write the "state" for future records  #  Write the "state" for future records
3484  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3485      printf "" > genmake_state      printf "" > genmake_state
3486      for i in $gm_state ; do      for i in $gm_state ; do
3487          t1="t2=\$$i"          t1="t2=\$$i"
3488          eval $t1          eval $t1
3489          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3490      done      done
3491  fi  fi

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