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revision 1.233 by jmc, Tue Aug 14 22:10:39 2012 UTC revision 1.260 by jmc, Thu Aug 22 01:10:53 2013 UTC
# Line 17  Usage: "$0" [OPTIONS] Line 17  Usage: "$0" [OPTIONS]
17    where [OPTIONS] can be:    where [OPTIONS] can be:
18    
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
25            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
26    
27      -nooptfile | --nooptfile      -nooptfile | --nooptfile
28        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
29        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
31            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
32            tools/build_options/ directory.            tools/build_options/ directory.
33    
34      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
35        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
36            Get package dependency information from "NAME".            Get package dependency information from "NAME".
37    
38      -pgroups NAME | --pgroups NAME      -pgroups NAME | --pgroups NAME
39        -pgroups=NAME | --pgroups=NAME        -pgroups=NAME | --pgroups=NAME
40            Get the package groups information from "NAME".            Get the package groups information from "NAME".
41    
42      -bash NAME      -bash NAME
43            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
44    
45      -make NAME | -m NAME      -make NAME | -m NAME
46        --make=NAME | -m=NAME        --make=NAME | -m=NAME
47            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
48            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
49    
50      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
51        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
52            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
53    
54      -makedepend NAME | -md NAME      -makedepend NAME | -md NAME
55        --makedepend=NAME | -md=NAME        --makedepend=NAME | -md=NAME
56            Use "NAME" for the MAKEDEPEND program.            Use "NAME" for the MAKEDEPEND program.
57    
58      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
61            By default, genamke will try to find the location by            By default, genamke will try to find the location by
62            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
63    
64      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
65        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
67            used for additional source code.  Files found in the            used for additional source code.  Files found in the
68            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
69            name found elsewhere.            name found elsewhere.
70    
71      -disable NAME | --disable NAME      -disable NAME | --disable NAME
72        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
73            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
74            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
75            genamke will exit with an error message.            genamke will exit with an error message.
76    
77      -enable NAME | --enable NAME      -enable NAME | --enable NAME
78        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
79            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
80            to specifically enable.  If this violates package            to specifically enable.  If this violates package
81            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
82    
83      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
84        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
85            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
86            used as the "standard" code.            used as the "standard" code.
87    
88      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
90            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
91            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
92            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
93    
94      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
96            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
97            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
98    
99      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101            *only* works if CPP_EEOPTIONS.h allows this.            *only* works if CPP_EEOPTIONS.h allows this.
102    
103      -ignoretime | -ignore_time | --ignoretime | --ignore_time      -ignoretime | -ignore_time | --ignoretime | --ignore_time
104            Ignore all the "wall clock" routines entirely.  This will            Ignore all the "wall clock" routines entirely.  This will
105            not in any way hurt the model results -- it simply means            not in any way hurt the model results -- it simply means
106            that the code that checks how long the model spends in            that the code that checks how long the model spends in
107            various routines will give junk values.            various routines will give junk values.
108    
109      -ts | --ts      -ts | --ts
110            Produce timing information per timestep            Produce timing information per timestep
111      -papis | --papis      -papis | --papis
112            Produce summary MFlop/s (and IPC) with PAPI per timestep            Produce summary MFlop/s (and IPC) with PAPI per timestep
113      -pcls | --pcls      -pcls | --pcls
114            Produce summary MFlop/s etc. with PCL per timestep            Produce summary MFlop/s etc. with PCL per timestep
115      -foolad | --foolad      -foolad | --foolad
116            Fool the AD code generator            Fool the AD code generator
117      -papi | --papi      -papi | --papi
118            Performance analysis with PAPI            Performance analysis with PAPI
119      -pcl | --pcl      -pcl | --pcl
120            Performance analysis with PCL            Performance analysis with PCL
121      -hpmt | --hpmt      -hpmt | --hpmt
122            Performance analysis with the HPM Toolkit            Performance analysis with the HPM Toolkit
123    
124      -ieee | --ieee      -ieee | --ieee
125            use IEEE numerics.  Note that this option *only* works            use IEEE numerics.  Note that this option *only* works
126            if it is supported by the OPTFILE that is being used.            if it is supported by the OPTFILE that is being used.
127      -devel | --devel      -devel | --devel
128            Add additional warning and debugging flags for development            Add additional warning and debugging flags for development
129            (if supported by the OPTFILE); also switch to IEEE numerics.            (if supported by the OPTFILE); also switch to IEEE numerics.
130      -gsl | --gsl      -gsl | --gsl
131            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
132    
133      -mpi | --mpi      -mpi | --mpi
134            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
135      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
136            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
137            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
138            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
139    
140      -omp | --omp      -omp | --omp
141            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
142      -omp=OMPFLAG | --omp=OMPFLAG      -omp=OMPFLAG | --omp=OMPFLAG
143            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
144    
145      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
146            Embed a tarball containing the full source code            Embed a tarball containing the full source code
147            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
148            executable [off by default]            executable [off by default]
149    
150      -ds | --ds      -ds | --ds
151            Report genmake internal variables status (DUMPSTATE)            Report genmake internal variables status (DUMPSTATE)
152            to file "genmake_state" (for debug purpose)            to file "genmake_state" (for debug purpose)
153    
154    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
155    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
# Line 174  EOF Line 174  EOF
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 203  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 218  test_for_string_in_file() { Line 208  test_for_string_in_file() {
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > $TMP.p1
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat $TMP.p1 | $AWK '(NF>2 && $2==":"){ print $0 }' > $TMP.p2
213          matched=0          matched=0
214          for i in $PACKAGES ; do          for i in $PACKAGES ; do
215              line=`grep "^ *$i" ./p2.tmp`              line=`grep "^ *$i" $TMP.p2`
216              RETVAL=$?              RETVAL=$?
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
# Line 234  expand_pkg_groups() { Line 224  expand_pkg_groups() {
224              fi              fi
225          done          done
226          PACKAGES=$new_packages          PACKAGES=$new_packages
227          rm -f ./p[1,2].tmp          rm -f $TMP.p[1,2]
228          return $matched          return $matched
229      else      else
230          echo "Warning: can't read package groups definition file: $PKG_GROUPS"          echo "Warning: can't read package groups definition file: $PKG_GROUPS"
# Line 305  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 335  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336      echo >> $LOGFILE      echo >> $LOGFILE
337      echo "running: look_for_makedepend()" >> $LOGFILE      echo "running: look_for_makedepend()" >> $LOGFILE
# Line 354  look_for_makedepend()  { Line 342  look_for_makedepend()  {
342              build_cyrus_makedepend              build_cyrus_makedepend
343              RETVAL=$?              RETVAL=$?
344              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
345                  echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"                  echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                  MAKEDEPEND=                  MAKEDEPEND=
347              fi              fi
348          else          else
# Line 367  look_for_makedepend()  { Line 355  look_for_makedepend()  {
355          fi          fi
356      fi      fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
358          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
360          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
# Line 384  EOF Line 370  EOF
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    system-default makedepend not found. Try to build cyrus-makedepend"              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"                  echo "  Works"
400                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'              else
401                  echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE                  echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
407          fi          fi
408      fi      fi
# Line 412  build_cyrus_makedepend()  { Line 415  build_cyrus_makedepend()  {
415      (      (
416          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
418              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
419          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
420              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
421          fi          fi
# Line 436  build_embed_encode() Line 439  build_embed_encode()
439  {  {
440      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
441      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443              echo              echo
444              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445              echo              echo
446              EMBED_SRC=f              EMBED_SRC=f
447              return 1              return 1
448          fi          fi
449          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
450          for ic in $clist ; do          for ic in $clist ; do
451              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 578  EOF Line 581  EOF
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587    
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 597  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603    }
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        rm -rf ./mpi_headers
611        if test -d $MPIINCLUDEDIR ; then
612    
613            #----- check for additional headers (chain of included headers)
614            echo -n '  Check MPI headers ... '
615            listIni=$MPI_HEADER_FILES
616            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617            outp=$?
618            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621    
622            doCheck=1 ; list2copy='' ; list2check=$listIni
623            while test $doCheck = 1 ; do
624              newList=''
625              for i in $list2check ; do
626                if test -f $MPIINCLUDEDIR/$i ; then
627                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630                  for j in $newInc ; do
631                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648  #     # look for possible MPI libraries          #----- create local mpi_headers dir if we have files to copy
649  #     mpi_libs=          mkListInc=`echo $list2copy | wc -w`
650  #     mpi_fort=`which mpif77 2>/dev/null`          if test $mkListInc != 0 ; then
651  #     RETVAL=$?            echo 'create local "./mpi_headers" dir'
652  #     if test "x${RETVAL}" = x0 ; then            mkdir -p ./mpi_headers
653  #       cat >>test.f <<EOF            INCLUDES="-I./mpi_headers $INCLUDES"
654  #       PROGRAM HELLO            mkListInc=1
655  #       DO 10, I=1,10          fi
656  #       PRINT *,'Hello World'          if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657  #    10 CONTINUE  
658  #       STOP          #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659  #       END          for i in $list2copy ; do
660  # EOF            if test -f $MPIINCLUDEDIR/$i ; then
661  #       eval "$mpi_fort -showme test.f > out"              cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662  #       RETVAL=$?              if test $i = 'mpif.h' ; then
663  #       if test "x${RETVAL}" = x0 ; then                  perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664  #           a=`cat out`              fi
665  #           for i in $a ; do              if test $mkListInc = 2 ; then
666  #               case $i in                  LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667  #                   -*)              fi
668  #                       mpi_libs="$mpi_libs $i" ;;              if test $mkListInc = 1 ; then
669  #               esac                  LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670  #           done              fi
671  #           echo "The MPI libs appear to be:"            fi
672  #           echo "  "$mpi_libs          done
673  #       fi      else
674  #       rm -f test.f out          echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675  #     fi          echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678  }  }
679    
680  #  Parse the package dependency information  #  Parse the package dependency information
# Line 650  get_fortran_c_namemangling()  { Line 699  get_fortran_c_namemangling()  {
699    
700      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
702          return 0          return 0
703      fi      fi
704      echo " running: get_fortran_c_namemangling()" >> $LOGFILE      echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705    
# Line 947  check_netcdf_libs()  { Line 996  check_netcdf_libs()  {
996        program fgennc        program fgennc
997  #include "netcdf.inc"  #include "netcdf.inc"
998  EOF  EOF
999      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1000          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1001      fi     #fi
1002      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1003        integer iret, ncid, xid        integer iret, ncid, xid
1004        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 1037  check_lapack_libs()  { Line 1086  check_lapack_libs()  {
1086      echo "running: check_lapack_libs()" >> $LOGFILE      echo "running: check_lapack_libs()" >> $LOGFILE
1087      cat <<EOF > genmake_tla.F      cat <<EOF > genmake_tla.F
1088        program fgenla        program fgenla
1089        integer info        integer info
1090        integer ipiv( 2 )        integer ipiv( 2 )
1091        double precision ab( 4, 2 ), b( 2 )        double precision ab( 4, 2 ), b( 2 )
1092        data ab / 0., 0., 1., 2., 0., 2., 1., 0. /        data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
# Line 1108  EOF Line 1157  EOF
1157                  LIBS="$LIBS -llapack -lf77blas -lcblas"                  LIBS="$LIBS -llapack -lf77blas -lcblas"
1158                  HAVE_LAPACK=t                  HAVE_LAPACK=t
1159                  echo "check_lapack: successful" >> $LOGFILE                  echo "check_lapack: successful" >> $LOGFILE
1160              else              else
1161              # try again with "-latlas" added to the libs              # try again with "-latlas" added to the libs
1162                  echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log                  echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163                  echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log                  echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164                  echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log                  echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165                  echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log                  echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166                  cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \                  cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1167                      &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \                      &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1168                      &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1                      &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169                  RET_COMPILE=$?                  RET_COMPILE=$?
1170                  echo >> $LOGFILE                  echo >> $LOGFILE
1171                  cat genmake_tla.log >> $LOGFILE                  cat genmake_tla.log >> $LOGFILE
1172                  if test "x$RET_COMPILE" = x0 ; then                  if test "x$RET_COMPILE" = x0 ; then
1173                      LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"                      LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174                      HAVE_LAPACK=t                      HAVE_LAPACK=t
1175                      echo "check_lapack: successful" >> $LOGFILE                      echo "check_lapack: successful" >> $LOGFILE
1176                  fi                  fi
1177              fi              fi
1178          fi          fi
1179      fi      fi
# Line 1132  EOF Line 1181  EOF
1181      echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE      echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182  }  }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224  ###############################################################################  ###############################################################################
1225  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1189  GSL= Line 1277  GSL=
1277  DEVEL=  DEVEL=
1278  HAVE_TEST_L=  HAVE_TEST_L=
1279    
1280    # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1284  HAVE_SYSTEM=  HAVE_SYSTEM=
1285  HAVE_FDATE=  HAVE_FDATE=
# Line 1200  HAVE_NETCDF= Line 1291  HAVE_NETCDF=
1291  HAVE_ETIME=  HAVE_ETIME=
1292  IGNORE_TIME=  IGNORE_TIME=
1293  HAVE_LAPACK=  HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
# Line 1207  SOURCEDIRS= Line 1299  SOURCEDIRS=
1299  INCLUDEDIRS=  INCLUDEDIRS=
1300  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1301    
1302    #- local config file
1303    gm_local="genmake_local"
1304    
1305  G2ARGS=  G2ARGS=
1306  BASH=  BASH=
1307  PWD=`pwd`  PWD=`pwd`
# Line 1242  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348  gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349    
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s7="TMP THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
# Line 1278  LOGFILE="genmake.log" Line 1378  LOGFILE="genmake.log"
1378  rm -f genmake_state genmake_*optfile $LOGFILE  rm -f genmake_state genmake_*optfile $LOGFILE
1379    
1380  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1381    
1382  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1383  #parse_options  #parse_options
# Line 1306  for ac_option in "$@" ; do Line 1396  for ac_option in "$@" ; do
1396      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397    
1398      case $ac_option in      case $ac_option in
1399            
1400          -help | --help | -h | --h)          -help | --help | -h | --h)
1401              usage ;;              usage ;;
1402            
1403          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1404              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1405          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1406              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1407          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1408              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1409            
1410          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1411              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1412          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1414            
1415          -pdepend | --pdepend)          -pdepend | --pdepend)
1416              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1417          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1418              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1419            
1420          -pgroups | --pgroups)          -pgroups | --pgroups)
1421              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1422          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1423              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1424            
1425          -make | --make | -m | --m)          -make | --make | -m | --m)
1426              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1427          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1428              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1429            
1430          -bash | --bash)          -bash | --bash)
1431              ac_prev=BASH ;;              ac_prev=BASH ;;
1432          -bash=* | --bash=*)          -bash=* | --bash=*)
1433              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1434            
1435          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1436              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1437          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1438              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1439            
1440          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1441              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1442          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1443              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1444            
1445          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1447              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1448              echo              echo
1449              usage              usage
1450              ;;              ;;
1451            
1452          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1453              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1454          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1456            
1457          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1458              ac_prev=MODS ;;              ac_prev=MODS ;;
1459          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1460              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1461            
1462          -disable | --disable)          -disable | --disable)
1463              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1464          -disable=* | --disable=*)          -disable=* | --disable=*)
1465              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1466            
1467          -enable | --enable)          -enable | --enable)
1468              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1469          -enable=* | --enable=*)          -enable=* | --enable=*)
1470              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1471            
1472          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1473              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1474          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1388  for ac_option in "$@" ; do Line 1478  for ac_option in "$@" ; do
1478  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1479  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1480  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1481            
1482          -cc | --cc)          -cc | --cc)
1483              ac_prev=CC ;;              ac_prev=CC ;;
1484          -cc=* | --cc=*)          -cc=* | --cc=*)
1485              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1486            
1487          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1488              ac_prev=FC ;;              ac_prev=FC ;;
1489          -fc=* | --fc=*)          -fc=* | --fc=*)
1490              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1491            
1492          -fs | --fs)          -fs | --fs)
1493              ac_prev=FS ;;              ac_prev=FS ;;
1494          -fs=* | --fs=*)          -fs=* | --fs=*)
1495              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1496            
1497          -fs90 | --fs90)          -fs90 | --fs90)
1498              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1499          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1500              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1501            
1502          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503              USE_R4=true ;;              USE_R4=true ;;
1504    
# Line 1416  for ac_option in "$@" ; do Line 1506  for ac_option in "$@" ; do
1506              IEEE=true ;;              IEEE=true ;;
1507          -noieee | --noieee)          -noieee | --noieee)
1508              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509          -devel | --devel)          -devel | --devel)
1510              IEEE=true ; DEVEL=true ;;              IEEE=true ; DEVEL=true ;;
1511          -gsl | --gsl)          -gsl | --gsl)
1512              GSL=true ;;              GSL=true ;;
1513    
1514          -ts | --ts)          -ts | --ts)
# Line 1441  for ac_option in "$@" ; do Line 1531  for ac_option in "$@" ; do
1531          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1532              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1533              MPI=true ;;              MPI=true ;;
1534            
1535          -omp | --omp)          -omp | --omp)
1536              OMP=true ;;              OMP=true ;;
1537          -omp=* | --omp=*)          -omp=* | --omp=*)
1538              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1539              OMP=true ;;              OMP=true ;;
1540            
1541          -ds | --ds)          -ds | --ds)
1542              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1543            
1544          -extra_flag | --extra_flag)          -extra_flag | --extra_flag)
1545              ac_prev=FEXTRAFLAGS ;;              ac_prev=FEXTRAFLAGS ;;
1546          -extra_flag=* | --extra_flag=*)          -extra_flag=* | --extra_flag=*)
1547              FEXTRAFLAGS=$ac_optarg ;;              FEXTRAFLAGS=$ac_optarg ;;
1548            
1549          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1550              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1551          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1465  for ac_option in "$@" ; do Line 1555  for ac_option in "$@" ; do
1555              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1556          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1557              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1558            
1559          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1561    
# Line 1476  for ac_option in "$@" ; do Line 1566  for ac_option in "$@" ; do
1566              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1567              usage              usage
1568              ;;              ;;
1569            
1570          *)          *)
1571              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575      esac      esac
1576    
1577  done  done
1578    
1579    TMP=./genmk_$$
1580    #- try to put temporary files in system-local /tmp dir
1581    #TMP=/tmp/genmk_$$
1582    #touch $TMP ; retVal=$?
1583    #if [ $retVal -eq 0 ] ; then
1584    #  if test ! -r $TMP ; then TMP=./genmk_$$ ; fi
1585    #else
1586    #  TMP=./genmk_$$
1587    #fi
1588    #rm -f $TMP
1589    ##echo "  temp files: $TMP.*"
1590    
1591    printf "  getting local config information:  "
1592    if test -f $gm_local ; then
1593        echo "using $gm_local"
1594        . $gm_local
1595    else
1596        echo "none found"
1597    fi
1598    
1599  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1600      echo      echo
1601      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1697  check_for_broken_Ff Line 1807  check_for_broken_Ff
1807    
1808  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1809        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1810        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1811    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1812    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1813  fi  fi
1814  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1815        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1714  fi Line 1826  fi
1826  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1827        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1828        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1829              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1830        else        else
1831              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1832        fi        fi
# Line 1750  if test ! "x$PAPI" = x ; then Line 1862  if test ! "x$PAPI" = x ; then
1862            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1863        else        else
1864            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1865            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1866            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1867            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1868            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1762  if test ! "x$PCL" = x ; then Line 1874  if test ! "x$PCL" = x ; then
1874            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1875        else        else
1876            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1877            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1878            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1879            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1880            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1772  if test ! "x$HPMT" = x ; then Line 1884  if test ! "x$HPMT" = x ; then
1884        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1885            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1886            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1887        else if test ! "x$PCL" = x ; then        else
1888            if test ! "x$PCL" = x ; then
1889            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1890            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1891        else          else
1892            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1893            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1894            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1895            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1896            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1897        fi          fi
1898        fi        fi
1899  fi  fi
1900  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1921  if test "x$HAVE_LAPACK" != x ; then Line 2034  if test "x$HAVE_LAPACK" != x ; then
2034  else  else
2035      echo "no"      echo "no"
2036  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2037    
2038    printf "  Can we call FLUSH intrinsic subroutine...  "
2039    check_HAVE_FLUSH
2040    if test "x$HAVE_FLUSH" = xt ; then
2041        DEFINES="$DEFINES -DHAVE_FLUSH"
2042        echo "yes"
2043    else
2044        echo "no"
2045    fi
2046    
2047    DEFINES="$DEFINES $IGNORE_TIME"
2048  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2049      build_embed_encode      build_embed_encode
2050  fi  fi
# Line 2106  else Line 2228  else
2228          exit 1          exit 1
2229      else      else
2230          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2231          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2232          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2233          RETVAL=$?          RETVAL=$?
2234          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2127  if test "x${PKG_GROUPS}" != x ; then Line 2249  if test "x${PKG_GROUPS}" != x ; then
2249  fi  fi
2250    
2251  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2252  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2253  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2254      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2255  done  done
2256  for i in `grep  "-" ./.tmp_pack` ; do  for i in `grep  "-" $TMP.pack` ; do
2257      j=`echo $i | sed 's/[-]//'`      j=`echo $i | sed 's/[-]//'`
2258      DISABLE="$DISABLE $j"      DISABLE="$DISABLE $j"
2259  done  done
# Line 2149  for p in $PACKAGES ; do Line 2271  for p in $PACKAGES ; do
2271  done  done
2272  PACKAGES="$pack"  PACKAGES="$pack"
2273  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2274  echo "" > ./.tmp_pack  echo "" > $TMP.pack
2275  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2276  # Test if each explicitly referenced package exists  # Test if each explicitly referenced package exists
2277  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2278      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2279      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2280          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2281          exit 1          exit 1
2282      fi      fi
2283      echo $i >> ./.tmp_pack      echo $i >> $TMP.pack
2284  done  done
2285  PACKAGES=  PACKAGES=
2286  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do  for i in `grep -v "-" $TMP.pack | sort | uniq` ; do
2287      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2288  done  done
2289  rm -f ./.tmp_pack  rm -f $TMP.pack
2290  echo "    packages are: $PACKAGES"  echo "    packages are: $PACKAGES"
2291    
2292  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
# Line 2201  else Line 2323  else
2323          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2324          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2325          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2326              exit 1              exit 1
2327          else          else
2328              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2329          fi          fi
# Line 2300  if  test "x${PKG_DEPEND}" != x ; then Line 2422  if  test "x${PKG_DEPEND}" != x ; then
2422    
2423          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2424          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2425              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2426              in_dis="f"              in_dis="f"
2427              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2428                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2325  if  test "x${PKG_DEPEND}" != x ; then Line 2447  if  test "x${PKG_DEPEND}" != x ; then
2447              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2448              exit 1              exit 1
2449          fi          fi
2450          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2451          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2452      done      done
2453      ck=$ck"t"      ck=$ck"t"
# Line 2366  for n in $names ; do Line 2488  for n in $names ; do
2488          done          done
2489          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2490              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2491              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2492          fi          fi
2493      fi      fi
2494  done  done
# Line 2379  for i in $PACKAGES ; do Line 2501  for i in $PACKAGES ; do
2501  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2502      case $i in      case $i in
2503          aim_v23)          aim_v23)
2504              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2505              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2506              ;;              ;;
2507      esac      esac
# Line 2421  for i in $spaths ; do Line 2543  for i in $spaths ; do
2543      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2544          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2545          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2546          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2547          for n in $names ; do          for n in $names ; do
2548              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2549          done          done
2550      fi      fi
2551      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2552      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2553          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2554          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2555  #**** not yet enabled ****  #**** not yet enabled ****
2556  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2557  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2443  fi Line 2565  fi
2565    
2566  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2567  #  compiler.  #  compiler.
2568  if test -f ./adSrcFiles.tmp ; then  if test -f $TMP.adSrcFiles ; then
2569      rm -f ./adSrcFiles.tmp      rm -f $TMP.adSrcFiles
2570  fi  fi
2571  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2572  touch adSrcFiles.tmp  touch $TMP.adSrcFiles
2573  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2574      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2575      for j in $list_files ; do      for j in $list_files ; do
2576          cat $i/$j >> adSrcFiles.tmp          cat $i/$j >> $TMP.adSrcFiles
2577      done      done
2578  done  done
2579  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2580      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f      cat $TMP.adSrcFiles | sed -e "s/\.f/.$FS/g" > $TMP.adSrcFiles_f
2581      mv -f adSrcFiles.tmp_f adSrcFiles.tmp      mv -f $TMP.adSrcFiles_f $TMP.adSrcFiles
2582  fi  fi
2583    
2584  echo  echo
# Line 2468  for i in $INCLUDEDIRS ; do Line 2590  for i in $INCLUDEDIRS ; do
2590      fi      fi
2591  done  done
2592    
2593  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2594      echo "  Creating the pseudo-MPI include directory"      if test ! "x$MPIINCLUDEDIR" = x ; then
2595      INCLUDES="-I./mpi_headers $INCLUDES"          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2596      rm -rf ./mpi_headers          #   checking for additional included headers (in case of chain of included
2597      mkdir -p ./mpi_headers          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2598            mpi_headers_do_local_copy
     if test "x$MPIINCLUDEDIR" = x ; then  
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
   
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2599      fi      fi
2600  fi  fi
2601    
2602  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2603  rm -rf .links.tmp  rm -rf $TMP.links
2604  mkdir .links.tmp  mkdir $TMP.links
2605  touch .links.tmp/foo  touch $TMP.links/foo
2606  if test ! -r ".links.tmp/foo" ; then  if test ! -r "$TMP.links/foo" ; then
2607      echo      echo
2608      echo "ERROR : something is wrong with your directory permissions or"      echo "ERROR : something is wrong with your directory permissions or"
2609      echo "   your user file-creation mask (\"umask\") since creating a"      echo "   your user file-creation mask (\"umask\") since creating a"
# Line 2513  if test ! -r ".links.tmp/foo" ; then Line 2619  if test ! -r ".links.tmp/foo" ; then
2619      echo      echo
2620      exit 1      exit 1
2621  fi  fi
2622  rm -f .links.tmp/foo  rm -f $TMP.links/foo
2623    
2624  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2625      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2626      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2627      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2628      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2629        OADTOOLS="$TOOLSDIR/OAD_support"
2630      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2631      for i in "." $MODS ; do      for i in "." $MODS ; do
2632          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2555  if test "x$OPENAD" != x ; then Line 2662  if test "x$OPENAD" != x ; then
2662      echo "   OpenAD exceptions:  "      echo "   OpenAD exceptions:  "
2663  fi  fi
2664    
2665  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > $TMP.srclinks
2666  echo "" >> srclinks.tmp  echo "" >> $TMP.srclinks
2667  printf 'F77_SRC_FILES = ' > F77srclist.tmp  printf 'F77_SRC_FILES = ' > $TMP.F77srclist
2668  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp  printf 'NON_AD_F77_SRC_FILES = ' > $TMP.nonADF77srclist
2669  printf 'C_SRC_FILES = '   > csrclist.tmp  printf 'C_SRC_FILES = '   > $TMP.csrclist
2670  printf 'F90_SRC_FILES = ' > F90srclist.tmp  printf 'F90_SRC_FILES = ' > $TMP.F90srclist
2671  printf 'H_SRC_FILES = '   > hsrclist.tmp  printf 'H_SRC_FILES = '   > $TMP.hsrclist
2672  printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp  printf 'AD_FLOW_FILES = ' > $TMP.ad_flow_files
2673  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2674  for d in $alldirs ; do  for d in $alldirs ; do
2675      deplist=      deplist=
# Line 2572  for d in $alldirs ; do Line 2679  for d in $alldirs ; do
2679          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2680      fi      fi
2681      for sf in $sfiles ; do      for sf in $sfiles ; do
2682          if test ! -r ".links.tmp/$sf" ; then          if test ! -r "$TMP.links/$sf" ; then
2683              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2684                  ignore_f=f                  ignore_f=f
2685                  case $d/$sf in                  case $d/$sf in
2686                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2687                          ignore_f=t                          ignore_f=t
2688                          ;;                          ;;
2689                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2690                          ignore_f=t                          ignore_f=t
2691                          ;;                          ;;
2692                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2693                          ignore_f=t                          ignore_f=t
2694                          ;;                          ;;
2695                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2696                          ignore_f=t                          ignore_f=t
2697                          ;;                          ;;
2698                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2699                          ignore_f=t                          ignore_f=t
2700                          ;;                          ;;
2701                    *)                    *)
2702                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2703                          #  ignore all soft-links                          #  ignore all soft-links
2704                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2705                              ignore_f=t                              ignore_f=t
2706                          else                          else
2707                              touch .links.tmp/$sf                              touch $TMP.links/$sf
2708                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2709                          fi                          fi
2710                          ;;                          ;;
2711                  esac                  esac
2712                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2713                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2714                      case $extn in                      case $extn in
2715                        F)                        F)
2716                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> $TMP.F77srclist
2717                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> $TMP.F77srclist
2718                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" = x ; then
2719                              basename=${sf%%.F}                              basename=${sf%%.F}
2720                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2721                                if test -z "$isAD" ; then
2722                                    echo    " \\"  >> $TMP.nonADF77srclist
2723                                    printf " $sf" >> $TMP.nonADF77srclist
2724                                fi
2725                            else #- OpenAD case:
2726                                basename=${sf%%.F}
2727                                isAD=`egrep ^$basename.f'[  ]*' $TMP.adSrcFiles`
2728                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2729                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2730                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2731                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2732                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2733                                  else                                  else
2734                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2735                                  fi                                  fi
# Line 2630  for d in $alldirs ; do Line 2744  for d in $alldirs ; do
2744                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2745                                  fi                                  fi
2746                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2747                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> $TMP.nonADF77srclist
2748                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> $TMP.nonADF77srclist
2749                                  fi                                  fi
2750                              fi                              fi
2751                          fi                          fi
2752                          ;;                          ;;
2753                      F90)                      F90)
2754                          echo    " \\"  >> F90srclist.tmp                          echo    " \\"  >> $TMP.F90srclist
2755                          printf " $sf" >> F90srclist.tmp                          printf " $sf" >> $TMP.F90srclist
2756                          ;;                          ;;
2757                      c)                      c)
2758                          echo    " \\"  >> csrclist.tmp                          echo    " \\"  >> $TMP.csrclist
2759                          printf " $sf" >> csrclist.tmp                          printf " $sf" >> $TMP.csrclist
2760                          ;;                          ;;
2761                      h)                      h)
2762                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> $TMP.hsrclist
2763                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> $TMP.hsrclist
2764                          ;;                          ;;
2765                      flow)                      flow)
2766                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> $TMP.ad_flow_files
2767                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> $TMP.ad_flow_files
2768                          ;;                          ;;
2769                     esac                     esac
2770                  fi                  fi
# Line 2659  for d in $alldirs ; do Line 2773  for d in $alldirs ; do
2773      done      done
2774      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2775        if test "$d" != "." ; then        if test "$d" != "." ; then
2776          echo "" >> srclinks.tmp          echo "" >> $TMP.srclinks
2777          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> $TMP.srclinks
2778          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> $TMP.srclinks
2779  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
2780  # This may happen when make thinks that a header file has to be "remade"  # This may happen when make thinks that a header file has to be "remade"
2781  # because a module it depends on has changed.  In this case we do nothing.  # because a module it depends on has changed.  In this case we do nothing.
2782          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp          printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> $TMP.srclinks
2783        fi        fi
2784      fi      fi
2785  done  done
2786  rm -rf .links.tmp  rm -rf $TMP.links
2787  echo "" >> F77srclist.tmp  echo "" >> $TMP.F77srclist
2788  echo "" >> nonADF77srclist.tmp  echo "" >> $TMP.nonADF77srclist
2789  echo "" >> csrclist.tmp  echo "" >> $TMP.csrclist
2790  echo "" >> F90srclist.tmp  echo "" >> $TMP.F90srclist
2791  echo "" >> hsrclist.tmp  echo "" >> $TMP.hsrclist
2792  echo "" >> ad_flow_files.tmp  echo "" >> $TMP.ad_flow_files
2793    
2794  CMDLINE=$0  CMDLINE=$0
2795  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2796      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2797                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2798  done  done
2799    
2800  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2714  cat >>$MAKEFILE <<EOF Line 2828  cat >>$MAKEFILE <<EOF
2828  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2829  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2830  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2831  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2832  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2833  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2729  INCLUDEDIRS = ${INCLUDEDIRS} Line 2841  INCLUDEDIRS = ${INCLUDEDIRS}
2841  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2842  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2843  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2844    OADTOOLS    = ${OADTOOLS}
2845    
2846  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2847  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2749  else Line 2862  else
2862      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2863  fi  fi
2864    
2865    # extract default cpp search path so we can pass it to makedepend
2866    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2867    
2868  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2869  # Unix ln (link)  # Unix ln (link)
2870  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2871  # Dependency generator  # Dependency generator
2872  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2873  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2771  LINK = ${LINK} ${LDADD} Line 2885  LINK = ${LINK} ${LDADD}
2885  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2886  # Includes for CPP  # Includes for CPP
2887  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2888    # default CPP includes for makedepend
2889    CPPINCLUDES = ${CPPINCLUDES}
2890  # Flags for KPP  # Flags for KPP
2891  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2892  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2789  NOOPTFLAGS = ${NOOPTFLAGS} Line 2905  NOOPTFLAGS = ${NOOPTFLAGS}
2905  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2906  LIBS = ${LIBS}  LIBS = ${LIBS}
2907  # Name of the makefile  # Name of the makefile
2908  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2909    # Name of the make program
2910    MAKE = ${MAKE}
2911    
2912  EOF  EOF
2913    
2914  cat F77srclist.tmp      >> $MAKEFILE  cat $TMP.F77srclist      >> $MAKEFILE
2915  cat nonADF77srclist.tmp >> $MAKEFILE  cat $TMP.nonADF77srclist >> $MAKEFILE
2916  cat csrclist.tmp        >> $MAKEFILE  cat $TMP.csrclist        >> $MAKEFILE
2917  cat F90srclist.tmp      >> $MAKEFILE  cat $TMP.F90srclist      >> $MAKEFILE
2918  cat hsrclist.tmp        >> $MAKEFILE  cat $TMP.hsrclist        >> $MAKEFILE
2919  cat ad_flow_files.tmp   >> $MAKEFILE  cat $TMP.ad_flow_files   >> $MAKEFILE
2920    
2921  rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp  rm -f $TMP.F77srclist $TMP.nonADF77srclist $TMP.csrclist $TMP.F90srclist $TMP.hsrclist $TMP.ad_flow_files
2922    
2923  echo >> $MAKEFILE  echo >> $MAKEFILE
2924    
# Line 2813  echo >> $MAKEFILE Line 2931  echo >> $MAKEFILE
2931  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2932  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2933  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2934  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2935  echo >> $MAKEFILE  echo >> $MAKEFILE
2936  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2937  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2938    
2939  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2940    
2941  all: \$(EXECUTABLE)  all: fwd_exe_target
2942    fwd_exe_target:
2943            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2944            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2945            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2946            @-rm -f ad_config.template
2947            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2948    
2949  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2950          @echo Creating \$@ ...          @echo Creating \$@ ...
2951          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2952    
2953  depend:  depend:
2954          @make -f \$(MAKEFILE) links          @\$(MAKE) -f \$(MAKEFILE) links
2955          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2956          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2957          -rm -f makedepend.out          -rm -f makedepend.out
2958    
# Line 2856  clean: Line 2981  clean:
2981    
2982  # remove most of the files that "make" and "make depend" generate  # remove most of the files that "make" and "make depend" generate
2983  Clean:  Clean:
2984          @make -f \$(MAKEFILE) clean          @\$(MAKE) -f \$(MAKEFILE) clean
2985          @make -f \$(MAKEFILE) cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2986          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2987          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
         -rm -f genmake_warnings genmake_errors make.log  
2988    
2989  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2990  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2991  CLEAN:  CLEAN:
2992          @make -f \$(MAKEFILE) Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2993          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2994          -rm -f $LOGFILE genmake_state genmake_*optfile          -rm -f $LOGFILE genmake_state genmake_*optfile
2995          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2996            -rm -rf mpi_headers mnc_test_*
2997          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2998          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2999          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
3000          -rm -f *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
3001            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
3002          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
3003          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
3004    
3005  makefile:  makefile:
3006          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
# Line 2884  cleanlinks: Line 3010  cleanlinks:
3010  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
3011  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
3012          @echo Creating \$@ ...          @echo Creating \$@ ...
3013          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
3014  AD_CONFIG.h:  AD_CONFIG.h:
3015          @echo Creating \$@ ...          @echo Creating \$@ ...
3016          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
3017  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3018          @echo Creating \$@ ...          @echo Creating \$@ ...
3019          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2927  cat >>$MAKEFILE <<EOF Line 3053  cat >>$MAKEFILE <<EOF
3053  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3054  ## %.o : %.F  ## %.o : %.F
3055    
3056    # C preprocessing and replacing the _d in constants:
3057    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3058    
3059  .F.$FS:  .F.$FS:
3060          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3061  .$FS.o:  .$FS.o:
3062          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3063  .F.o:  .F.o:
3064          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3065  .F90.$FS90:  .F90.$FS90:
3066          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3067  .FF90.f$FS90:  .FF90.f$FS90:
3068          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3069  .$FS90.o:  .$FS90.o:
3070          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3071  .f$FS90.o:  .f$FS90.o:
# Line 2945  cat >>$MAKEFILE <<EOF Line 3074  cat >>$MAKEFILE <<EOF
3074  .c.o:  .c.o:
3075          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3076  .flow.flowdir:  .flow.flowdir:
3077          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3078    
3079  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3080  .F.p:  .F.p:
3081          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3082  .p.$FS:  .p.$FS:
3083          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3084    
# Line 2968  TAF            = ${TAF} Line 3097  TAF            = ${TAF}
3097    
3098  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3099  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3100    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3101    
3102  EOF  EOF
3103    
# Line 2985  done Line 3115  done
3115  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3116  echo >> $MAKEFILE  echo >> $MAKEFILE
3117  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3118  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3119  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3120      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3121      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3122  done  done
3123  echo >> $MAKEFILE  echo >> $MAKEFILE
3124  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3125    
3126  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3127    
3128  # ... AD ...  # ... AD ...
3129  adall: \$(EXE_AD)  adall: ad_exe_target
3130  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3131  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3132    
3133  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3134          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3135            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3136            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3137            @-rm -f ad_config.template
3138            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3139    
3140    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3141            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3142          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3143          -rm -f ad_config.template          @-rm -f ad_config.template
3144          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3145          @make -f \$(MAKEFILE) \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3146          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3147    
3148  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3149            @-rm -f ad_input_code_ad.$FS ; echo ''
3150          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3151          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3152          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
# Line 3018  adtafonly: Line 3156  adtafonly:
3156          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3157          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3158    
3159  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(H_SRC_FILES) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3160          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3161    
3162  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3163          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
# Line 3034  adonlyfwd: Line 3172  adonlyfwd:
3172  adtrick:  adtrick:
3173          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3174    
3175  adobj: ad_taf_output.o \$(OBJFILES)  adobj: ad_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o)
3176    
3177  # ... FTL ...  # ... FTL ...
3178  ftlall: \$(EXE_FTL)  ftlall: ftl_exe_target
3179  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3180  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3181    
3182  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3183          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3184          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3185          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3186          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3187          @make -f \$(MAKEFILE) \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3188          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3189    ftl_input_code.$FS: \$(AD_FILES)
3190            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3191            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3192            @-rm -f ad_config.template
3193            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3194            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3195            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3196    
3197  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3198            @-rm -f ftl_input_code_tl.$FS ; echo ''
3199          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3200          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3201          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3202    
3203  ftltafonly:  ftltafonly:
3204          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3205          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3206          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3207    
3208  \${EXE_FTL}: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(H_SRC_FILES) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(EMBEDDED_FILES)
3209          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) ftl_taf_output.o \$(NON_AD_F77_SRC_FILES:.F=.o) \$(F90_SRC_FILES:.F90=.o) \$(C_SRC_FILES:.c=.o) \$(LIBS)
3210    
3211  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3212          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
# Line 3089  svd_touch: Line 3235  svd_touch:
3235          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3236          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3237          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3238          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3239          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3240          -rm -f ftl_config.template          @-rm -f ad_config.template
3241    
3242  EOF  EOF
3243    
# Line 3143  for i in `cat ${OAD_CB2M_FILES}` ; do Line 3289  for i in `cat ${OAD_CB2M_FILES}` ; do
3289    echo    " \\" >> $MAKEFILE    echo    " \\" >> $MAKEFILE
3290    printf " ${i}_mod.f$FS90" >> $MAKEFILE    printf " ${i}_mod.f$FS90" >> $MAKEFILE
3291  done  done
3292  AD_FILES=`cat adSrcFiles.tmp`  AD_FILES=`cat $TMP.adSrcFiles`
3293  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3294    basename=${i%%.f}    basename=${i%%.f}
3295    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
# Line 3153  for i in $AD_FILES ; do Line 3299  for i in $AD_FILES ; do
3299    fi    fi
3300  done  done
3301  echo >> $MAKEFILE  echo >> $MAKEFILE
3302  rm -f adSrcFiles.tmp  rm -f $TMP.adSrcFiles
3303    
3304  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3305    
# Line 3175  w2f__types.F90 \ Line 3321  w2f__types.F90 \
3321  OAD_active.F90 \  OAD_active.F90 \
3322  OAD_cp.F90 \  OAD_cp.F90 \
3323  OAD_rev.F90 \  OAD_rev.F90 \
3324  OAD_tape.F90  OAD_tape.F90 \
3325    revolve.F90
3326    
3327  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3328  iaddr.c \  iaddr.c \
# Line 3191  f95_test.out: f95_test_mods.f90 f95_test Line 3338  f95_test.out: f95_test_mods.f90 f95_test
3338          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3339          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3340    
3341  # the file included below is created by the  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
 # postProcessor and its inclusion sets the  
 # variable POSTPROCESSEDFILES  
 # used below. Because the file is made during  
 # make it won't be read until the second (recursive)  
 # invocation in the rule below  
 -include postProcess.make  
3342    
3343  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) \$(POSTPROCESSEDFILES:.f$FS90=.o)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3344    
3345  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3346    
3347  postProcess.comp: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S1)  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
 ifeq (\$(MAKELEVEL),0)  
         \$(MAKE) adAll  
 else  
         touch \$@  
 endif  
   
 \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.comp \$(AD_OBJ_FILES_S2)  
 ifeq (\$(MAKELEVEL),1)  
3348          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
 else  
         touch \$@  
 endif  
3349    
3350  # makefile debug rule  # create sources files modules from header files containing common blocks
3351  openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3352  .PHONY: openad          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3353    
3354  # create the module files  # create new header files with USE statements for the new modules made above
3355  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3356          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3357    
3358  # create the header files  # change the include directives of everybody to refer to  the new header files with the USE statements
3359  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3360          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
   
 # change everybody else to use the new module files:  
 %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  
         ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3361    
3362  # makefile debug rule  # makefile debug rule
3363  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3244  ad_output.txt: \$(EXE_AD) Line 3370  ad_output.txt: \$(EXE_AD)
3370          @printf 'running ... '          @printf 'running ... '
3371          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3372    
 CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  
3373  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3374          cat \$^ > \$@          cat \$^ > \$@
3375    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3376  # canonicalizer  # canonicalizer
3377  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3378          ./preProcess.py --timing --r8 -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3379    
3380    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3381    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3382            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3383    
3384  # F -> WHIRL  # F -> WHIRL
3385  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3386  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3387    
3388  # WHIRL -> XAIF  # WHIRL -> XAIF
3389  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3390          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3391    
3392  # XAIF -> XAIF'  # XAIF -> XAIF'
3393  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3394          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3395    
3396  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3397  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3398          ./xaif2whirl --debug 1 ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3399    
3400  # WHIRL' -> F'  # WHIRL' -> F'
3401  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3402          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3403    
3404  # insert template directives  # insert template directives
3405  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3406          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3407    
3408  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(notdir \$(wildcard \${OADTOOLS}/ad_template.*.F)) ad_inline.F
3409  # postprocess F'  # postprocess F'
3410  postProcess.tag: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3411          # the target is a placeholder to signal execution of the rule          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ad_inline.f \$<
3412            # the target is a placeholder to trigger a single execution of the rule
3413          touch \$@          touch \$@
3414          # this step also creates the file postProcess.make but we cannot  # put this so make knows about the postprocessing output
3415          # name it as the target or else make will try to remake it for  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
         # the include directive above for any rule, e.g. make clean  
         ./postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed -m r -i ../OAD_support/ad_inline.f --width 4 \$<  
3416    
3417  # setup some links  # link the XAIF schema files
3418  %.xsd:  %.xsd:
3419          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3420    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3421  # link the support files:  # link the support files:
3422  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES) \$(PPEXTRAS):
3423          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
   
 whirl2xaif xaif2whirl:  
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
3424    
3425  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.make postProcess.tag postProcess.comp \$(PPEXTRAS:.F=.f)  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag
3426    
3427  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3428    
# Line 3366  for i in $NOOPTFILES ; do Line 3458  for i in $NOOPTFILES ; do
3458  done  done
3459    
3460  echo "  Add rules for links"  echo "  Add rules for links"
3461  cat srclinks.tmp >> $MAKEFILE  cat $TMP.srclinks >> $MAKEFILE
3462  rm -f srclinks.tmp  rm -f $TMP.srclinks
3463    
3464  echo "  Adding makedepend marker"  echo "  Adding makedepend marker"
3465  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE  printf "\n\n# DO NOT DELETE\n" >> $MAKEFILE
# Line 3375  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3467  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3467  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3468    
3469  # Create special header files  # Create special header files
3470  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3471  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3472      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3473  else  else
# Line 3389  else Line 3481  else
3481      fi      fi
3482  fi  fi
3483  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3484      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3485  fi  fi
3486    
3487  #  Write the "state" for future records  #  Write the "state" for future records

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