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revision 1.191 by jmc, Wed Apr 22 19:21:18 2009 UTC revision 1.255 by jmc, Thu Aug 8 17:34:27 2013 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 56  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 67  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 110  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 137  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 165  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 176  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
358          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
360          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
361  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362  #  #
363  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
364  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
365  #   empty one to find and parse.  #   empty one to find and parse.
366  EOF  EOF
367          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 370  EOF
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                            echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
407          fi          fi
408      fi      fi
409  }  }
410    
   
411  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
412        echo >> $LOGFILE
413        echo "running: build_cyrus_makedepend()" >> $LOGFILE
414      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
415      (      (
416          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
418              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
419          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
420              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
421          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 427  build_cyrus_makedepend()  {
427      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
428      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
429          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431          return 0          return 0
432      else      else
433          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434          return 1          return 1
435      fi      fi
436  }  }
437    
   
438  build_embed_encode()  build_embed_encode()
439  {  {
440      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
441      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443              echo              echo
444              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445              echo              echo
446              EMBED_SRC=f              EMBED_SRC=f
447              return 1              return 1
448          fi          fi
449          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
450          for ic in $clist ; do          for ic in $clist ; do
451              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
452              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453              RETVAL=$?              RETVAL=$?
454              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
455                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
456                  return 0                  return 0
457              fi              fi
458          done          done
# Line 287  build_embed_encode() Line 464  build_embed_encode()
464          return 1          return 1
465      fi      fi
466      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
467  }  }
468    
469    #  look for possible C compilers
470  # Guess possible config options for this host  look_for_C_compilers() {
471  find_possible_configs()  {      echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
474      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
475  #include <stdio.h>  #include <stdio.h>
476  int main(int argc, char **argv) {  int main(int argc, char **argv) {
477    printf("Hello!\n");    printf("Hello!\n");
478    return 0;    return 0;
479  }  }
480  EOF  EOF
481          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483        for c in $tmp ; do
484            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485            echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487          RETVAL=$?          RETVAL=$?
488          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490              p_CC="$p_CC $c"              p_CC="$p_CC $c"
491          fi          fi
492      done      done
# Line 354  Error: No C compilers were found in your Line 502  Error: No C compilers were found in your
502  EOF  EOF
503          exit 1          exit 1
504      else      else
505          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
506          if test "x$CC" = x ; then          if test "x$CC" = x ; then
507              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
508              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
509          fi          fi
510      fi      fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530      #================================================================      #================================================================
531      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
532      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 gfortran g95"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534      p_FC=      p_FC=
535      for c in $tmp ; do      rm -f ./genmake_hello.f
536          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 394  Error: No Fortran compilers were found i Line 563  Error: No Fortran compilers were found i
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
567      fi      fi
568    
569      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 572  EOF
572          for i in $p_FC ; do          for i in $p_FC ; do
573              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
575                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                  break                  break
577              fi              fi
578          done          done
# Line 413  EOF Line 581  EOF
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 442  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
       
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
   
603  }  }
604    
605  #  Parse the package dependency information  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606  get_pdepend_list()  {  #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
     #  strip the comments and then convert the dependency file into  
     #  two arrays: PNAME, DNAME  
     cat $1 | sed -e 's/#.*$//g' \  
         | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \  
         > ./.pd_tmp  
     . ./.pd_tmp  
     rm -f ./.pd_tmp  
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
608    
609      -pdefault NAME | --pdefault NAME      dBug=0
610        -pdefault=NAME | --pdefault=NAME      rm -rf ./mpi_headers
611            Get the default package list from "NAME".      if test -d $MPIINCLUDEDIR ; then
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
     -devel | --devel  
           Add additional warning and debugging flags for development  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -omp | --omp  
           Activate OpenMP code + use Compiler option OMPFLAG  
     -omp=OMPFLAG | --omp=OMPFLAG  
           Activate OpenMP code + use Compiler option OMPFLAG  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
612    
613    For more detailed genmake documentation, please see:          #----- check for additional headers (chain of included headers)
614            echo -n '  Check MPI headers ... '
615            listIni=$MPI_HEADER_FILES
616            echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
617            outp=$?
618            #- always check mpif.h (the only mpi-header included in standard MITgcm code)
619            if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
620            if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
621    
622            doCheck=1 ; list2copy='' ; list2check=$listIni
623            while test $doCheck = 1 ; do
624              newList=''
625              for i in $list2check ; do
626                if test -f $MPIINCLUDEDIR/$i ; then
627                  newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
628                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
629                  if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
630                  for j in $newInc ; do
631                    echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
632                    outp=$?
633                    if test $outp != 0 ; then
634                      if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
635                      newList="$newList $j"
636                    fi
637                  done
638                  if test $dBug = 1 ; then echo "" ; fi
639                fi
640              done
641              if test "x$newList" = x ; then doCheck=0
642              else list2check=$newList ; list2copy="$list2copy $newList"
643              fi
644            done
645            list2copy="$MPI_HEADER_FILES $list2copy"
646            if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
647    
648      http://mitgcm.org/devel_HOWTO/          #----- create local mpi_headers dir if we have files to copy
649            mkListInc=`echo $list2copy | wc -w`
650            if test $mkListInc != 0 ; then
651              echo 'create local "./mpi_headers" dir'
652              mkdir -p ./mpi_headers
653              INCLUDES="-I./mpi_headers $INCLUDES"
654              mkListInc=1
655            fi
656            if test "x$LOCAL_MPI_HEADERS" != x ; then mkListInc=0 ; fi
657    
658            #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
659            for i in $list2copy ; do
660              if test -f $MPIINCLUDEDIR/$i ; then
661                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
662                if test $i = 'mpif.h' ; then
663                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
664                fi
665                if test $mkListInc = 2 ; then
666                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
667                fi
668                if test $mkListInc = 1 ; then
669                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=2
670                fi
671              fi
672            done
673        else
674            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a directory"
675            echo "WARNING: => skip checking for MPI headers (no ./mpi_headers dir)"
676    #       exit -1
677        fi
678    }
679    
680  EOF  #  Parse the package dependency information
681    get_pdepend_list()  {
682    
683      exit 1      #  strip the comments and then convert the dependency file into
684        #  two arrays: PNAME, DNAME
685        cat $1 | sed -e 's/#.*$//g' \
686            | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
687            > ./.pd_tmp
688        RETVAL=$?
689        if test ! "x${RETVAL}" = x0 ; then
690          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
691          exit 1
692        fi
693        . ./.pd_tmp
694        rm -f ./.pd_tmp
695  }  }
696    
697  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 647  get_fortran_c_namemangling()  { Line 699  get_fortran_c_namemangling()  {
699    
700      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
701      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
702          return 0          return 0
703      fi      fi
704        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
705    
706      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
707        
708      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
709  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
710  EOF  EOF
711      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
712        echo ' '$COMM >> $LOGFILE
713        $COMM >> $LOGFILE 2>&1
714      RETVAL=$?      RETVAL=$?
715      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
716          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
717          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
718    
719  WARNING: C test compile fails   WARNING: C test compile fails
720  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
721  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
722  EOF  EOF
723          return 1          return 1
724      fi      fi
# Line 671  EOF Line 726  EOF
726      RETVAL=$?      RETVAL=$?
727      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
728          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
729          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
730    
731  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
732  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
734  EOF  EOF
735          return 1          return 1
736      fi      fi
# Line 685  EOF Line 740  EOF
740        call tsub( string )        call tsub( string )
741        end        end
742  EOF  EOF
743      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
744        echo ' '$COMM >> $LOGFILE
745        $COMM >> $LOGFILE 2>&1
746      RETVAL=$?      RETVAL=$?
747      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
748          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
749          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
750    
751  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
752  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
753  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
754  EOF  EOF
755          return 1          return 1
756      fi      fi
# Line 701  EOF Line 758  EOF
758      RETVAL=$?      RETVAL=$?
759      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
760          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
761          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
762    
763  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
764  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
765  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
766  EOF  EOF
767          return 1          return 1
768      fi      fi
# Line 731  EOF Line 788  EOF
788    
789      #  cleanup the testing files      #  cleanup the testing files
790      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
791    
792        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
793    }
794    
795  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
796        echo >> $LOGFILE
797        echo "running: check_HAVE_CLOC()" >> $LOGFILE
798      get_fortran_c_namemangling      get_fortran_c_namemangling
799      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
800  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 752  void FC_NAMEMANGLE(cloc) ( double *curti Line 812  void FC_NAMEMANGLE(cloc) ( double *curti
812  }  }
813  EOF  EOF
814      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
815      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
816      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
817      RET_C=$?      RET_C=$?
818      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
819        program hello        program hello
# Line 764  EOF Line 824  EOF
824        end        end
825  EOF  EOF
826      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
827      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
828      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
829      RET_F=$?      RET_F=$?
830      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
831      RETVAL=$?      RETVAL=$?
832      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
833          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
834      fi      fi
835      rm -f genmake_tc*      rm -f genmake_tc*
836        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
837  }  }
838    
   
839  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
840      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
841          return          return
842      fi      fi
843        echo >> $LOGFILE
844        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
845      get_fortran_c_namemangling      get_fortran_c_namemangling
846      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
847  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 813  void FC_NAMEMANGLE(sigreg) (int * aip) Line 874  void FC_NAMEMANGLE(sigreg) (int * aip)
874  }  }
875  EOF  EOF
876      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
877      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
878      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
879      RET_C=$?      RET_C=$?
880      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
881        program hello        program hello
# Line 824  EOF Line 885  EOF
885        call sigreg(anint)        call sigreg(anint)
886        end        end
887  EOF  EOF
888      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
889      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
890      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
891      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
892      RETVAL=$?      RETVAL=$?
893      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
894          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
895      fi      fi
896      rm -f genmake_tc*      rm -f genmake_tc*
897        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
898  }  }
899    
   
900  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
901      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
902          return          return
903      fi      fi
904        echo >> $LOGFILE
905        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
906      get_fortran_c_namemangling      get_fortran_c_namemangling
907      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
908  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 863  void FC_NAMEMANGLE(setrlstk) () Line 919  void FC_NAMEMANGLE(setrlstk) ()
919  }  }
920  EOF  EOF
921      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
922      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
923      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
924      RET_C=$?      RET_C=$?
925      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
926        program hello        program hello
# Line 872  EOF Line 928  EOF
928        call setrlstk()        call setrlstk()
929        end        end
930  EOF  EOF
931      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
932      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
933      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
934      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
935      RETVAL=$?      RETVAL=$?
936      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
937          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
938      fi      fi
939      rm -f genmake_tc*      rm -f genmake_tc*
940        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
941  }  }
942    
   
943  check_HAVE_STAT()  {  check_HAVE_STAT()  {
944        echo >> $LOGFILE
945        echo "running: check_HAVE_STAT()" >> $LOGFILE
946      get_fortran_c_namemangling      get_fortran_c_namemangling
947      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
948  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 909  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 964  void FC_NAMEMANGLE(tfsize) ( int *nbyte
964  }  }
965  EOF  EOF
966      COMM="$CC $CFLAGS -c genmake_tc_1.c"      COMM="$CC $CFLAGS -c genmake_tc_1.c"
967      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
968      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
969      RET_C=$?      RET_C=$?
970      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
# Line 919  EOF Line 974  EOF
974        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
975        end        end
976  EOF  EOF
977      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
978      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
979      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
980      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
981      RETVAL=$?      RETVAL=$?
982      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
983          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
984      fi      fi
985      rm -f genmake_tc*      rm -f genmake_tc*
986        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
987  }  }
988    
   
989  check_netcdf_libs()  {  check_netcdf_libs()  {
990      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
991          return          return
992      fi      fi
993      echo >> genmake_warnings      echo >> $LOGFILE
994      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
995      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
996        program fgennc        program fgennc
997  #include "netcdf.inc"  #include "netcdf.inc"
998  EOF  EOF
999      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
1000          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
1001      fi     #fi
1002      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
1003        integer iret, ncid, xid        integer iret, ncid, xid
1004        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 957  EOF Line 1009  EOF
1009        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
1010        end        end
1011  EOF  EOF
1012      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
1013      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
1014      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
1015      RET_CPP=f      RET_CPP=f
1016      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
1017      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 975  EOF Line 1027  EOF
1027      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1028          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1029      RET_COMPILE=$?      RET_COMPILE=$?
1030      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1031    
1032      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1033      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 986  EOF Line 1038  EOF
1038    
1039      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1040          HAVE_NETCDF=t          HAVE_NETCDF=t
1041            echo "check_netcdf: successful" >> $LOGFILE
1042      else      else
1043          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1044          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1045          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1046          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1047          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 996  EOF Line 1049  EOF
1049              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1050              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1051          RET_COMPILE=$?          RET_COMPILE=$?
1052          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1053            cat genmake_tnc.log >> $LOGFILE
1054          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1055              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1056              HAVE_NETCDF=t              HAVE_NETCDF=t
1057                echo "check_netcdf: successful" >> $LOGFILE
1058          else          else
1059          # try again with "-lnetcdff" added to the libs          # try again with "-lnetcdff" added to the libs
1060              echo "try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log              echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1061              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log              echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1062              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log              echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1063              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log              echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 1010  EOF Line 1065  EOF
1065                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \                  &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1066                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1                  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1067              RET_COMPILE=$?              RET_COMPILE=$?
1068              cat genmake_tnc.log >> genmake_warnings              echo >> $LOGFILE
1069                cat genmake_tnc.log >> $LOGFILE
1070              if test "x$RET_COMPILE" = x0 ; then              if test "x$RET_COMPILE" = x0 ; then
1071                  LIBS="$LIBS -lnetcdff -lnetcdf"                  LIBS="$LIBS -lnetcdff -lnetcdf"
1072                  HAVE_NETCDF=t                  HAVE_NETCDF=t
1073                    echo "check_netcdf: successful" >> $LOGFILE
1074              fi              fi
1075          fi          fi
1076      fi      fi
1077      rm -f genmake_tnc*      rm -f genmake_tnc*
1078        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1079    }
1080    
1081    check_lapack_libs()  {
1082        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1083            return
1084        fi
1085        echo >> $LOGFILE
1086        echo "running: check_lapack_libs()" >> $LOGFILE
1087        cat <<EOF > genmake_tla.F
1088          program fgenla
1089          integer info
1090          integer ipiv( 2 )
1091          double precision ab( 4, 2 ), b( 2 )
1092          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1093          data b / 1., 1. /
1094          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1095          IF (info .NE. 0) write(*,*) 'Error:', info
1096          write(*,*) b
1097          end
1098    EOF
1099        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1100        cat genmake_tla.F >> genmake_tla.log
1101        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1102        RET_CPP=f
1103        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1104        echo "$COMM" >> genmake_tla.log
1105        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1106        if test "x$RET_CPP" = xf ; then
1107            echo "  WARNING: CPP failed to pre-process the lapack test." \
1108                >> genmake_tla.log
1109            echo "    Please check that \$INCLUDES is properly set." \
1110                >> genmake_tla.log
1111        fi
1112        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1113        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1114        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1115            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1116        RET_COMPILE=$?
1117        cat genmake_tla.log >> $LOGFILE
1118    
1119        # test program execution not always possible (see check_netcdf_libs)
1120        #
1121        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1122        #RETVAL=$?
1123        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1124    
1125        if test "x$RET_COMPILE" = x0 ; then
1126            HAVE_LAPACK=t
1127            echo "check_lapack: successful" >> $LOGFILE
1128        else
1129            # try again with "-llapack" added to the libs
1130            echo "==> try again with added '-llapack'" > genmake_tla.log
1131            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1132            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1133            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1134            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1135                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1136                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1137            RET_COMPILE=$?
1138            echo >> $LOGFILE
1139            cat genmake_tla.log >> $LOGFILE
1140            if test "x$RET_COMPILE" = x0 ; then
1141                LIBS="$LIBS -llapack"
1142                HAVE_LAPACK=t
1143                echo "check_lapack: successful" >> $LOGFILE
1144            else
1145            # try again with "-lf77blas -lcblas" added to the libs
1146                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1147                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1148                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1149                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1150                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1151                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1152                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1153                RET_COMPILE=$?
1154                echo >> $LOGFILE
1155                cat genmake_tla.log >> $LOGFILE
1156                if test "x$RET_COMPILE" = x0 ; then
1157                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1158                    HAVE_LAPACK=t
1159                    echo "check_lapack: successful" >> $LOGFILE
1160                else
1161                # try again with "-latlas" added to the libs
1162                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1163                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1164                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1165                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1166                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1167                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1168                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1169                    RET_COMPILE=$?
1170                    echo >> $LOGFILE
1171                    cat genmake_tla.log >> $LOGFILE
1172                    if test "x$RET_COMPILE" = x0 ; then
1173                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1174                        HAVE_LAPACK=t
1175                        echo "check_lapack: successful" >> $LOGFILE
1176                    fi
1177                fi
1178            fi
1179        fi
1180        rm -f genmake_tla*
1181        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1182  }  }
1183    
1184    check_HAVE_FLUSH()  {
1185        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1186            return
1187        fi
1188        echo >> $LOGFILE
1189        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1190        cat <<EOF > genmake_tflsh.$FS
1191          program fgenflsh
1192          integer iounit
1193          character*9 fname
1194          iounit = 26
1195          fname = 'tmp.tflsh'
1196          open(iounit,FILE=fname,STATUS='unknown')
1197          write(iounit,*) 'genmake_tflsh: hello'
1198          call flush(iounit)
1199          close(iounit)
1200          end
1201    EOF
1202        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1203        cat genmake_tflsh.$FS >> genmake_tflsh.log
1204        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1205    
1206        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1207        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1208        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1209            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1210        RET_COMPILE=$?
1211    
1212        if test "x$RET_COMPILE" = x0 ; then
1213            HAVE_FLUSH=t
1214            #cat genmake_tflsh.log >> $LOGFILE
1215            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1216        else
1217            HAVE_FLUSH=f
1218            cat genmake_tflsh.log >> $LOGFILE
1219        fi
1220        rm -f genmake_tflsh*
1221        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1222    }
1223    
1224  ###############################################################################  ###############################################################################
1225  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1043  ENABLE= Line 1242  ENABLE=
1242  DISABLE=  DISABLE=
1243  # MAKEFILE=  # MAKEFILE=
1244  # MAKEDEPEND=  # MAKEDEPEND=
1245  PDEPEND=  PKG_DEPEND=
1246  DUMPSTATE=t  PKG_GROUPS=
1247  PDEFAULT=  DUMPSTATE=f
1248  OPTFILE=  OPTFILE=
1249  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1250  FFLAGS=  FFLAGS=
# Line 1053  FOPTIM= Line 1252  FOPTIM=
1252  FEXTRAFLAGS=  FEXTRAFLAGS=
1253  USE_EXTENDED_SRC=  USE_EXTENDED_SRC=
1254  EXTENDED_SRC_FLAG=  EXTENDED_SRC_FLAG=
1255    GET_FC_VERSION=
1256  CFLAGS=  CFLAGS=
1257  KFLAGS1=  KFLAGS1=
1258  KFLAGS2=  KFLAGS2=
# Line 1065  MPI= Line 1265  MPI=
1265  MPIPATH=  MPIPATH=
1266  OMP=  OMP=
1267  OMPFLAG=  OMPFLAG=
1268    USE_R4=
1269  TS=  TS=
1270  PAPIS=  PAPIS=
1271  PCLS=  PCLS=
# Line 1076  GSL= Line 1277  GSL=
1277  DEVEL=  DEVEL=
1278  HAVE_TEST_L=  HAVE_TEST_L=
1279    
1280    # comment this line out to enable lapack test
1281    SKIP_LAPACK_CHECK=t
1282    
1283  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1284  HAVE_SYSTEM=  HAVE_SYSTEM=
1285  HAVE_FDATE=  HAVE_FDATE=
# Line 1086  HAVE_STAT= Line 1290  HAVE_STAT=
1290  HAVE_NETCDF=  HAVE_NETCDF=
1291  HAVE_ETIME=  HAVE_ETIME=
1292  IGNORE_TIME=  IGNORE_TIME=
1293    HAVE_LAPACK=
1294    HAVE_FLUSH=
1295    
1296  MODS=  MODS=
1297  TOOLSDIR=  TOOLSDIR=
# Line 1093  SOURCEDIRS= Line 1299  SOURCEDIRS=
1299  INCLUDEDIRS=  INCLUDEDIRS=
1300  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1301    
1302    #- local config file
1303    gm_local="genmake_local"
1304    
1305  G2ARGS=  G2ARGS=
1306  BASH=  BASH=
1307  PWD=`pwd`  PWD=`pwd`
# Line 1108  MACHINE=`uname -a` Line 1317  MACHINE=`uname -a`
1317  EXECUTABLE=  EXECUTABLE=
1318  EXEHOOK=  EXEHOOK=
1319  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1320  IEEE=  IEEE=
1321  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1322      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1129  FTL_TAF_FLAGS= Line 1337  FTL_TAF_FLAGS=
1337  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1338  TAMC_EXTRA=  TAMC_EXTRA=
1339    
1340    DIVA=
1341    MPIINCLUDEDIR=
1342    MPI_HEADER_FILES=
1343    LOCAL_MPI_HEADERS=
1344    
1345  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1346  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1347  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL DEVEL MPI OMP DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1348    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1349    
1350  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1351  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM FEXTRAFLAGS"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1352  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1353  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1354  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1355  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1356    
1357  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1358  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1359  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1360  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1361    
1362  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1363  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1364    
1365  cat <<EOF  cat <<EOF
1366    
1367  GENMAKE :  GENMAKE :
1368    
1369  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1370  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1371    or for more detail see the Developer's HOWTO manual at:
1372    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1373    
1374  EOF  EOF
1375    
1376    LOGFILE="genmake.log"
1377    #- clean-up previous genmake logfiles:
1378    rm -f genmake_state genmake_*optfile $LOGFILE
1379    
1380  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1381    
1382  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1383  #parse_options  #parse_options
1384  ac_prev=  ac_prev=
1385  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1194  for ac_option in "$@" ; do Line 1392  for ac_option in "$@" ; do
1392          ac_prev=          ac_prev=
1393          continue          continue
1394      fi      fi
1395        
1396      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1397        
1398      case $ac_option in      case $ac_option in
1399            
1400          -help | --help | -h | --h)          -help | --help | -h | --h)
1401              usage ;;              usage ;;
1402            
1403          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1404              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1405          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1406              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1407          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1408              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1409            
1410          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1411              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1412          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1413              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1414            
1415          -pdepend | --pdepend)          -pdepend | --pdepend)
1416              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1417          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1418              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1419            
1420          -pdefault | --pdefault)          -pgroups | --pgroups)
1421              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1422          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1423              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1424            
1425          -make | --make | -m | --m)          -make | --make | -m | --m)
1426              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1427          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1428              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1429            
1430          -bash | --bash)          -bash | --bash)
1431              ac_prev=BASH ;;              ac_prev=BASH ;;
1432          -bash=* | --bash=*)          -bash=* | --bash=*)
1433              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1434            
1435          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1436              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1437          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1438              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1439            
1440          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1441              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1442          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1443              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1444            
1445          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1446              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1447              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1448              echo              echo
1449              usage              usage
1450              ;;              ;;
1451            
1452          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1453              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1454          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1455              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1456            
1457          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1458              ac_prev=MODS ;;              ac_prev=MODS ;;
1459          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1460              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1461            
1462          -disable | --disable)          -disable | --disable)
1463              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1464          -disable=* | --disable=*)          -disable=* | --disable=*)
1465              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1466            
1467          -enable | --enable)          -enable | --enable)
1468              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1469          -enable=* | --enable=*)          -enable=* | --enable=*)
1470              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1471            
1472          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1473              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1474          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1280  for ac_option in "$@" ; do Line 1478  for ac_option in "$@" ; do
1478  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1479  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1480  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1481            
1482          -cc | --cc)          -cc | --cc)
1483              ac_prev=CC ;;              ac_prev=CC ;;
1484          -cc=* | --cc=*)          -cc=* | --cc=*)
1485              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1486            
1487          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1488              ac_prev=FC ;;              ac_prev=FC ;;
1489          -fc=* | --fc=*)          -fc=* | --fc=*)
1490              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1491            
1492          -fs | --fs)          -fs | --fs)
1493              ac_prev=FS ;;              ac_prev=FS ;;
1494          -fs=* | --fs=*)          -fs=* | --fs=*)
1495              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1496            
1497          -fs90 | --fs90)          -fs90 | --fs90)
1498              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1499          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1500              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1501            
1502            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1503                USE_R4=true ;;
1504    
1505          -ieee | --ieee)          -ieee | --ieee)
1506              IEEE=true ;;              IEEE=true ;;
1507          -noieee | --noieee)          -noieee | --noieee)
1508              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1509            -devel | --devel)
1510                IEEE=true ; DEVEL=true ;;
1511            -gsl | --gsl)
1512                GSL=true ;;
1513    
1514          -ts | --ts)          -ts | --ts)
1515              TS=true ;;              TS=true ;;
# Line 1321  for ac_option in "$@" ; do Line 1526  for ac_option in "$@" ; do
1526          -hpmt | --hpmt)          -hpmt | --hpmt)
1527              HPMT=true ;;              HPMT=true ;;
1528    
         -gsl | --gsl)  
             GSL=true ;;  
   
         -devel | --devel)  
             DEVEL=true ;;  
   
1529          -mpi | --mpi)          -mpi | --mpi)
1530              MPI=true ;;              MPI=true ;;
1531          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1532              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1533              MPI=true ;;              MPI=true ;;
1534            
1535          -omp | --omp)          -omp | --omp)
1536              OMP=true ;;              OMP=true ;;
1537          -omp=* | --omp=*)          -omp=* | --omp=*)
1538              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1539              OMP=true ;;              OMP=true ;;
1540            
1541          -ds | --ds)          -ds | --ds)
1542              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1543            
1544            -extra_flag | --extra_flag)
1545                ac_prev=FEXTRAFLAGS ;;
1546            -extra_flag=* | --extra_flag=*)
1547                FEXTRAFLAGS=$ac_optarg ;;
1548    
1549          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1550              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1551          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1351  for ac_option in "$@" ; do Line 1555  for ac_option in "$@" ; do
1555              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1556          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1557              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1558            
1559          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1560              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1561    
# Line 1362  for ac_option in "$@" ; do Line 1566  for ac_option in "$@" ; do
1566              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1567              usage              usage
1568              ;;              ;;
1569            
1570          *)          *)
1571              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1572              usage              usage
1573              ;;              ;;
1574            
1575      esac      esac
1576        
1577  done  done
1578    
1579    printf "  getting local config information:  "
1580    if test -f $gm_local ; then
1581        echo "using $gm_local"
1582        . $gm_local
1583    else
1584        echo "none found"
1585    fi
1586    
1587  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1588      echo      echo
1589      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1590      echo "  file.  This file format is no longer supported.  For directions on"      echo "  file.  This file format is no longer supported.  For directions on"
1591      echo "  how to setup and use the new \"genmake2\" script, please see:"      echo "  how to setup and use the new \"genmake2\" script, please see:"
1592      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1593      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1594      echo "WARNING: ignore \"./.genmakerc\" and continue."      echo "WARNING: ignore \"./.genmakerc\" and continue."
1595      echo      echo
1596  fi  fi
1597    
1598  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1393  if test "x${ROOTDIR}" = x ; then Line 1604  if test "x${ROOTDIR}" = x ; then
1604          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1605              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1606                  ROOTDIR=$d                  ROOTDIR=$d
1607                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1608                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1609                  break                  break
1610              fi              fi
1611          done          done
# Line 1414  fi Line 1625  fi
1625  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1626  version_file="${ROOTDIR}/doc/tag-index"  version_file="${ROOTDIR}/doc/tag-index"
1627  if test -f $version_file ; then  if test -f $version_file ; then
1628      THISVER=`grep '^checkpoint' $version_file | head -1`      THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1629  #-  remove ./BUILD_INFO.h file if older than version_file  #-  remove ./BUILD_INFO.h file if older than version_file
1630      if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then      if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1631          echo "  remove ./BUILD_INFO.h (older than ${version_file})"          echo "  remove ./BUILD_INFO.h (older than ${version_file})"
# Line 1426  if test "x$MAKEFILE" = x ; then Line 1637  if test "x$MAKEFILE" = x ; then
1637      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1638  fi  fi
1639    
1640  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1641  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1642      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1643          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1644          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1645          find_possible_configs          find_possible_optfile
1646      else      else
1647          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1648      fi      fi
# Line 1446  if test "x$OPTFILE" != xNONE ; then Line 1657  if test "x$OPTFILE" != xNONE ; then
1657              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1658              exit 1              exit 1
1659          fi          fi
1660          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1661              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1662          fi          fi
1663      else      else
# Line 1455  if test "x$OPTFILE" != xNONE ; then Line 1666  if test "x$OPTFILE" != xNONE ; then
1666      fi      fi
1667  fi  fi
1668    
1669  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1670  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1671      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1672          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1473  if test "x${AD_OPTFILE}" != xNONE ; then Line 1684  if test "x${AD_OPTFILE}" != xNONE ; then
1684              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1685              exit 1              exit 1
1686          fi          fi
1687          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1688              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1689          fi          fi
1690      else      else
# Line 1501  Error: no Fortran compiler: please speci Line 1712  Error: no Fortran compiler: please speci
1712  EOF  EOF
1713      exit 1      exit 1
1714  fi  fi
1715    if test "x$GET_FC_VERSION" != x ; then
1716      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1717      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1718      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1719      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1720      if test -s genmake_fc_vers1 ; then
1721        cat genmake_fc_vers1 >> $LOGFILE
1722      else
1723        cat genmake_fc_vers2 >> $LOGFILE
1724      fi
1725      echo "<-- compiler version ----" >> $LOGFILE
1726      rm -f genmake_fc_vers1 genmake_fc_vers2
1727    fi
1728    
1729  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1730      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1731  fi  fi
1732    
1733  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1734      LINK=$FC      LINK=$FC
1735  fi  fi
# Line 1518  if test "x$MAKE" = x ; then Line 1737  if test "x$MAKE" = x ; then
1737      MAKE="make"      MAKE="make"
1738  fi  fi
1739  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1740      CPP=cpp      CPP="cpp -traditional -P"
1741  fi  fi
1742  #EH3 === UGLY ===  #EH3 === UGLY ===
1743  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1545  EOF Line 1764  EOF
1764  else  else
1765      rm -f test_cpp      rm -f test_cpp
1766  fi  fi
1767    
1768  look_for_makedepend  look_for_makedepend
1769    
1770    #  Check that soft-link command is set and usable
1771  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1772      LN="ln -s"      LN="ln -s"
1773  fi  fi
# Line 1555  RETVAL=$? Line 1777  RETVAL=$?
1777  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1778      cat <<EOF 1>&2      cat <<EOF 1>&2
1779    
1780  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1781    command in the optfile.    command in the optfile.
1782    
1783  EOF  EOF
# Line 1573  check_for_broken_Ff Line 1795  check_for_broken_Ff
1795    
1796  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1797        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1798        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1799    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1800    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1801  fi  fi
1802  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1803        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1582  if test ! "x$OMP" = x ; then Line 1806  if test ! "x$OMP" = x ; then
1806        DEFINES="$DEFINES -DUSE_OMP_THREADING"        DEFINES="$DEFINES -DUSE_OMP_THREADING"
1807  fi  fi
1808    
1809    if test ! "x$USE_R4" = x ; then
1810          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1811          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1812    fi
1813    
1814  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1815        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1816        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1817              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1818        else        else
1819              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1820        fi        fi
# Line 1621  if test ! "x$PAPI" = x ; then Line 1850  if test ! "x$PAPI" = x ; then
1850            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1851        else        else
1852            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1853            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1854            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1855            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1856            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1633  if test ! "x$PCL" = x ; then Line 1862  if test ! "x$PCL" = x ; then
1862            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1863        else        else
1864            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1865            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1866            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1867            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1868            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1643  if test ! "x$HPMT" = x ; then Line 1872  if test ! "x$HPMT" = x ; then
1872        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1873            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1874            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1875        else if test ! "x$PCL" = x ; then        else
1876            if test ! "x$PCL" = x ; then
1877            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1878            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1879        else          else
1880            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1881            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1882            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1883            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1884            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1885        fi          fi
1886        fi        fi
1887  fi  fi
1888  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1733  rm -f genmake_tcomp* Line 1963  rm -f genmake_tcomp*
1963  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1964  check_HAVE_CLOC  check_HAVE_CLOC
1965  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1966        DEFINES="$DEFINES -DHAVE_CLOC"
1967      echo "yes"      echo "yes"
1968  else  else
1969      echo "no"      echo "no"
# Line 1747  rm -f genmake_t* Line 1978  rm -f genmake_t*
1978  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1979  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1980  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1981        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1982      echo "yes"      echo "yes"
1983  else  else
1984      echo "no"      echo "no"
# Line 1756  rm -f genmake_t* Line 1988  rm -f genmake_t*
1988  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1989  check_HAVE_SIGREG  check_HAVE_SIGREG
1990  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1991        DEFINES="$DEFINES -DHAVE_SIGREG"
1992      echo "yes"      echo "yes"
1993  else  else
1994      echo "no"      echo "no"
# Line 1765  rm -f genmake_t* Line 1998  rm -f genmake_t*
1998  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1999  check_HAVE_STAT  check_HAVE_STAT
2000  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
2001        DEFINES="$DEFINES -DHAVE_STAT"
2002      echo "yes"      echo "yes"
2003  else  else
2004      echo "no"      echo "no"
# Line 1774  rm -f genmake_t* Line 2008  rm -f genmake_t*
2008  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
2009  check_netcdf_libs  check_netcdf_libs
2010  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
2011        DEFINES="$DEFINES -DHAVE_NETCDF"
2012        echo "yes"
2013    else
2014        echo "no"
2015    fi
2016    
2017    printf "  Can we create LAPACK-enabled binaries...  "
2018    check_lapack_libs
2019    if test "x$HAVE_LAPACK" != x ; then
2020        DEFINES="$DEFINES -DHAVE_LAPACK"
2021        echo "yes"
2022    else
2023        echo "no"
2024    fi
2025    
2026    printf "  Can we call FLUSH intrinsic subroutine...  "
2027    check_HAVE_FLUSH
2028    if test "x$HAVE_FLUSH" = xt ; then
2029        DEFINES="$DEFINES -DHAVE_FLUSH"
2030      echo "yes"      echo "yes"
2031  else  else
2032      echo "no"      echo "no"
2033  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2034    
2035    DEFINES="$DEFINES $IGNORE_TIME"
2036  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2037      build_embed_encode      build_embed_encode
2038  fi  fi
2039  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2040      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2041    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2042  fi  fi
2043    
   
2044  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2045  printf "  Adding MODS directories: "  printf "  Adding MODS directories: "
2046  for d in $MODS ; do  for d in $MODS ; do
# Line 1803  for d in $MODS ; do Line 2056  for d in $MODS ; do
2056  done  done
2057  echo  echo
2058    
2059  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2060      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2061  fi  #fi
2062    
2063  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2064      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1845  ERROR: neither of the two default script Line 2098  ERROR: neither of the two default script
2098      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2099      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2100    
2101    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2102    working version of this script.    working version of this script.
2103    
2104  EOF  EOF
# Line 1857  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2110  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2110    
2111  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2112    
2113    #  Set Standard Code Directories:
2114    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2115        STANDARDDIRS="eesupp model"
2116    fi
2117    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2118    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2119    ckM=$?
2120    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2121    ckE=$?
2122    if test $ckM = 0 -a $ckE = 1 ; then
2123        STANDARDDIRS="$STANDARDDIRS eesupp"
2124    fi
2125    
2126  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2127  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2128  #  they appear as regular source code  #  they appear as regular source code
2129  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2130      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2131      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2132        ) > make_eesupp.errors 2>&1
2133      RETVAL=$?      RETVAL=$?
2134      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2135          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1877  fi Line 2144  fi
2144  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
2145      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2146          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
2147          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2148            ) > make_${pdir}.errors 2>&1
2149          RETVAL=$?          RETVAL=$?
2150          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2151              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1890  for pdir in exch2 regrid ; do Line 2158  for pdir in exch2 regrid ; do
2158  done  done
2159    
2160  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2161  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2162      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2163      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2164          PDEPEND=$tmp  fi
2165      else  if  test "x${PKG_DEPEND}" = x ; then
2166          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2167          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2168  else  else
2169      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2170          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2171          exit 1          exit 1
2172      fi      fi
2173        echo "  getting package dependency info from  $PKG_DEPEND"
2174    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2175        get_pdepend_list $PKG_DEPEND
2176  fi  fi
2177  echo "  getting package dependency info from  $PDEPEND"  
2178  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2179  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2180  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2181      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2182      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2183  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2184  if test ! "x${RETVAL}" = x0 ; then  fi
2185      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2186      exit 1          echo "Warning:  No package groups information was specified."
2187            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2188    else
2189        if test ! -r ${PKG_GROUPS} ; then
2190            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2191            exit 1
2192        fi
2193        echo "  getting package groups info from      $PKG_GROUPS"
2194  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2195    
2196  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2197  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2198  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2199  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2200      for i in "." $MODS ; do      for i in "." $MODS ; do
2201          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2202                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2203                  break                  break
2204          fi          fi
2205      done      done
2206  fi  fi
2207  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2208      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2209  fi      if test "x${PKG_GROUPS}" = x ; then
2210  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2211      echo "    default packages file disabled"          exit 1
2212        fi
2213  else  else
2214      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2215          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2216            exit 1
2217      else      else
2218          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2219          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2220          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2221          RETVAL=$?          RETVAL=$?
2222          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2223              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2224              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2225              exit 1              exit 1
2226          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2227      fi      fi
2228  fi  fi
2229    for i in $pkg_list ; do
2230        PACKAGES="$PACKAGES $i"
2231    done
2232    echo     "    before group expansion packages are:$PACKAGES"
2233    if test "x${PKG_GROUPS}" != x ; then
2234        RET=1
2235        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2236        echo "    after group expansion packages are: $PACKAGES"
2237    fi
2238    
2239  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2240    echo "" > ./.tmp_pack
2241  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2242      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2243  done  done
# Line 1986  PACKAGES="$PACKAGES $ENABLE" Line 2265  PACKAGES="$PACKAGES $ENABLE"
2265  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2266      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2267      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2268          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2269          exit 1          exit 1
2270      fi      fi
2271      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2272  done  done
# Line 1996  for i in `grep -v "-" ./.tmp_pack | sort Line 2275  for i in `grep -v "-" ./.tmp_pack | sort
2275      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2276  done  done
2277  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2278  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2279    
2280  #  Check for package MNC: if NetCDF is available, then build the MNC  #  Check for package MNC: if NetCDF is available, then build the MNC
2281  #  template files ; otherwise, delete mnc from the list of packages.  #  template files ; otherwise, delete mnc from the list of packages.
2282  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2283  RETVAL=$?  mnc_in=$?
2284  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2285      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2286          cat <<EOF          cat <<EOF
   
2287  *********************************************************************  *********************************************************************
2288  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2289    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2290    
2291    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2292    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2293         NetCDF library to link against.         NetCDF library to link against.
2294    
2295    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2296  *********************************************************************  *********************************************************************
   
2297  EOF  EOF
2298          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2299          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2300      else      else
2301          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2302          RETVAL=$?          DISABLE="$DISABLE mnc"
2303          if test "x${RETVAL}" = x0 ; then      fi
2304              rm -f make_mnc.errors  else
2305          else      # we have NetCDF, we try to build MNC template files
2306              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2307              cat make_mnc.errors 1>&2      RETVAL=$?
2308        if test "x${RETVAL}" = x0 ; then
2309            rm -f make_mnc.errors
2310        else
2311            echo "Error: problem encountered while building source files in pkg/mnc:"
2312            cat make_mnc.errors 1>&2
2313            if test "x$mnc_in" = x0 ; then
2314              exit 1              exit 1
2315            else
2316                DISABLE="$DISABLE mnc"
2317          fi          fi
2318      fi      fi
2319  fi  fi
2320    
2321  #  Check for package PROFILES: if NetCDF is not available,  #  Check for package PROFILES: if NetCDF is not available,
2322  #  then delete profiles from the list of available packages.  #  then delete profiles from the list of available packages.
2323  echo $PACKAGES | grep ' profiles ' > /dev/null 2>&1  if test "x$HAVE_NETCDF" != xt ; then
2324  RETVAL=$?      echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2325  if test "x$RETVAL" = x0 ; then      RETVAL=$?
2326      if test "x$HAVE_NETCDF" != xt ; then      if test "x$RETVAL" = x0 ; then
2327          cat <<EOF          cat <<EOF
   
2328  *********************************************************************  *********************************************************************
2329  WARNING: the "profiles" package was enabled but tests failed to  WARNING: the "profiles" package was enabled but tests failed to
2330    compile NetCDF applications.  Please check that:    compile NetCDF applications.  Please check that:
2331    
2332    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2333    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2334         NetCDF library to link against.         NetCDF library to link against.
2335    
2336    Due to this failure, the "profiles" package is now DISABLED.    Due to this failure, the "profiles" package is now DISABLED.
2337  *********************************************************************  *********************************************************************
   
2338  EOF  EOF
2339          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2340          DISABLE="$DISABLE profiles"          DISABLE="$DISABLE profiles"
2341        else
2342        #  this prevent to add profiles (due to pdepend rules) if not available
2343            DISABLE="$DISABLE profiles"
2344        fi
2345    fi
2346    
2347    #  Check for package RADTRANS: if LAPACK is not available,
2348    #  then issue a warning that the direct radtrans solver is not available.
2349    if test "x$HAVE_LAPACK" != xt ; then
2350        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2351        RETVAL=$?
2352        if test "x$RETVAL" = x0 ; then
2353            cat <<EOF
2354    *********************************************************************
2355    WARNING: the "radtrans" package was enabled but tests failed to
2356      compile LAPACK applications.  This means that the direct radtrans
2357      solver is not available and compilation will fail if it is enabled.
2358      If you want to use the direct solver, please check that:
2359    
2360      1) LAPACK is correctly installed for this compiler and
2361      2) the LIBS variable (within the "optfile") specifies the correct
2362         LAPACK library to link against.
2363    *********************************************************************
2364    EOF
2365      fi      fi
2366  fi  fi
2367    
2368  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2369  ck=    echo "  applying package dependency rules"
2370  while test "x$ck" != xtt ; do    ck=
2371      while test "x$ck" != xtt ; do
2372      i=0      i=0
2373      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2374      rtot=$nname      rtot=$nname
# Line 2076  while test "x$ck" != xtt ; do Line 2384  while test "x$ck" != xtt ; do
2384                  pin="t"                  pin="t"
2385              fi              fi
2386          done          done
2387            #  or in the current $STANDARDDIRS list?
2388            for p in $STANDARDDIRS ; do
2389                if test "x$p" = "x$pname" ; then pin="t" ; fi
2390            done
2391    
2392          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2393          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2098  while test "x$ck" != xtt ; do Line 2410  while test "x$ck" != xtt ; do
2410    
2411          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2412          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2413              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2414              in_dis="f"              in_dis="f"
2415              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2416                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2119  while test "x$ck" != xtt ; do Line 2431  while test "x$ck" != xtt ; do
2431          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2432          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2433              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2434              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2435              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2436              exit 1              exit 1
2437          fi          fi
2438          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2439          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2440      done      done
2441      ck=$ck"t"      ck=$ck"t"
2442  done    done
2443  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2444    fi
2445  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2446      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2447      if test -d $adr ; then      if test -d $adr ; then
# Line 2145  done Line 2458  done
2458    
2459  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2460  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2461  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2462  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2463  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2464  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2465  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2163  for n in $names ; do Line 2476  for n in $names ; do
2476          done          done
2477          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2478              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2479              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2480          fi          fi
2481      fi      fi
2482  done  done
# Line 2174  for i in $PACKAGES ; do Line 2487  for i in $PACKAGES ; do
2487  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2488    
2489  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2490      case $i in      case $i in
2491          aim_v23)          aim_v23)
2492              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2493              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2494              ;;              ;;
2495      esac      esac
# Line 2184  for i in $PACKAGES ; do Line 2497  for i in $PACKAGES ; do
2497    
2498  done  done
2499    
2500  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2501  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2502  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2503      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2504          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2221  for i in $spaths ; do Line 2531  for i in $spaths ; do
2531      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2532          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2533          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2534          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2535          for n in $names ; do          for n in $names ; do
2536              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2537          done          done
2538      fi      fi
2539      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2540      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2541          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2542          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2543  #**** not yet enabled ****  #**** not yet enabled ****
2544  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2545  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2247  if test -f ./adSrcFiles.tmp ; then Line 2557  if test -f ./adSrcFiles.tmp ; then
2557      rm -f ./adSrcFiles.tmp      rm -f ./adSrcFiles.tmp
2558  fi  fi
2559  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2560    touch adSrcFiles.tmp
2561  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2562      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2563      for j in $list_files ; do      for j in $list_files ; do
# Line 2267  for i in $INCLUDEDIRS ; do Line 2578  for i in $INCLUDEDIRS ; do
2578      fi      fi
2579  done  done
2580    
2581  if test ! "x$DIVA" = x ; then  #if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2582      echo "  Creating the pseudo-MPI include directory"  if test ! "x$MPI" = x ; then
2583      INCLUDES="-I./mpi_headers $INCLUDES"      if test ! "x$MPIINCLUDEDIR" = x ; then
2584      rm -rf ./mpi_headers          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2585      mkdir -p ./mpi_headers          #   checking for additional included headers (in case of chain of included
2586            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2587      if test "x$MPIINCLUDEDIR" = x ; then          mpi_headers_do_local_copy
         if test "x$MPIHOME" = x ; then  
             MPIHOME='/usr'  
         fi  
         MPIINCLUDEDIR='$MPIHOME/include'  
     fi  
       
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
 #       exit -1  
2588      fi      fi
2589  fi  fi
2590    
# Line 2314  if test ! -r ".links.tmp/foo" ; then Line 2610  if test ! -r ".links.tmp/foo" ; then
2610  fi  fi
2611  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2612    
2613  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
2614      OAD_DONT_COMPILE="/dev/null"      OAD_DONT_COMPILE="/dev/null"
2615      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2616      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2617      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2618        OADTOOLS="$TOOLSDIR/OAD_support"
2619      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2620      for i in "." $MODS ; do      for i in "." $MODS ; do
2621          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2367  for d in $alldirs ; do Line 2664  for d in $alldirs ; do
2664      deplist=      deplist=
2665      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2666      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2667      if test "x$OPENAD" != x ; then      if test "x$OPENAD" != x ; then
2668          sfiles=`( echo $sfiles | grep -v _cb2m\. )`          sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2669      fi      fi
2670      for sf in $sfiles ; do      for sf in $sfiles ; do
2671          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2672              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2673                  ignore_f=f                  ignore_f=f
2674                  case $d/$sf in                  case $d/$sf in
2675                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2676                          ignore_f=t                          ignore_f=t
2677                          ;;                          ;;
2678                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2679                          ignore_f=t                          ignore_f=t
2680                          ;;                          ;;
2681                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2682                          ignore_f=t                          ignore_f=t
2683                          ;;                          ;;
2684                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2685                          ignore_f=t                          ignore_f=t
2686                          ;;                          ;;
2687                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2688                          ignore_f=t                          ignore_f=t
2689                          ;;                          ;;
2690                    *)                    *)
2691                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2692                          #  ignore all soft-links                          #  ignore all soft-links
2693                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2400  for d in $alldirs ; do Line 2697  for d in $alldirs ; do
2697                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2698                          fi                          fi
2699                          ;;                          ;;
2700                  esac                  esac
2701                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2702                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2703                      case $extn in                      case $extn in
2704                        F)                        F)
2705                          echo    " \\"  >> F77srclist.tmp                          echo    " \\"  >> F77srclist.tmp
2706                          printf " $sf" >> F77srclist.tmp                          printf " $sf" >> F77srclist.tmp
2707                          if test "x$OPENAD" != x ; then                          if test "x$OPENAD" != x ; then
2708                              basename=${sf%%.F}                              basename=${sf%%.F}
2709                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2710                              if test -z "$isAD" ; then                              if test -z "$isAD" ; then
2711                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2712                                  if test -z "$toBeIgnored" ; then                                  if test -z "$toBeIgnored" ; then
2713                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> nonADF77srclist.tmp
2714                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> nonADF77srclist.tmp
2715                                  else                                  else
2716                                      echo "    not to be compiled   :  $sf"                                      echo "    not to be compiled   :  $sf"
2717                                  fi                                  fi
2718                              else # file is initially listed as an AD file we want to exclude it                              else # file is initially listed as an AD file we want to exclude it
2719                                   # or we want to retain the untransformed version                                   # or we want to retain the untransformed version
2720                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2721                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2722                                  if test -n "$notToBeTransformed"; then                                  if test -n "$notToBeTransformed"; then
2723                                      echo "    not to be transformed:  $sf"                                      echo "    not to be transformed:  $sf"
2724                                  fi                                  fi
2725                                  if test -n "$untransformedVersionToBeKept" ; then                                  if test -n "$untransformedVersionToBeKept" ; then
2726                                      echo "    original to be kept  :  $sf"                                      echo "    original to be kept  :  $sf"
2727                                  fi                                      fi
2728                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then                                  if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2729                                      echo    " \\"  >> nonADF77srclist.tmp                                      echo    " \\"  >> nonADF77srclist.tmp
2730                                      printf " $sf" >> nonADF77srclist.tmp                                      printf " $sf" >> nonADF77srclist.tmp
# Line 2447  for d in $alldirs ; do Line 2744  for d in $alldirs ; do
2744                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2745                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2746                          ;;                          ;;
2747                      flow)                      flow)
2748                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2749                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2750                          ;;                          ;;
# Line 2458  for d in $alldirs ; do Line 2755  for d in $alldirs ; do
2755      done      done
2756      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2757        if test "$d" != "." ; then        if test "$d" != "." ; then
2758          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2759          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2760          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2761  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2476  echo "" >> F90srclist.tmp Line 2773  echo "" >> F90srclist.tmp
2773  echo "" >> hsrclist.tmp  echo "" >> hsrclist.tmp
2774  echo "" >> ad_flow_files.tmp  echo "" >> ad_flow_files.tmp
2775    
2776    CMDLINE=$0
2777    for xx in "$@" ; do nw=`echo $xx | wc -w`
2778        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2779                            else CMDLINE="$CMDLINE '$xx'" ; fi
2780    done
2781    
2782  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2783      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2784  fi  fi
2785  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2786  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2485  echo "#    $MACHINE" >> $MAKEFILE Line 2788  echo "#    $MACHINE" >> $MAKEFILE
2788  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2789  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2790  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2791  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2792  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2793  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2794    
# Line 2496  EXE_SVD=$EXECUTABLE"_svd" Line 2799  EXE_SVD=$EXECUTABLE"_svd"
2799  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2800  #  #
2801  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2802  #  #
2803  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2804  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2805  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2507  cat >>$MAKEFILE <<EOF Line 2810  cat >>$MAKEFILE <<EOF
2810  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2811  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2812  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2813  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2814  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2815  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2516  cat >>$MAKEFILE <<EOF Line 2817  cat >>$MAKEFILE <<EOF
2817  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2818    
2819  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2820  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2821  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2822  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2823  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2824  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2825  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2826    OADTOOLS    = ${OADTOOLS}
2827    
2828  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2829  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2542  else Line 2844  else
2844      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2845  fi  fi
2846    
2847    # extract default cpp search path so we can pass it to makedepend
2848    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2849    
2850  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2851  # Unix ln (link)  # Unix ln (link)
2852  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2853  # Dependency generator  # Dependency generator
2854  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2855  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2564  LINK = ${LINK} ${LDADD} Line 2867  LINK = ${LINK} ${LDADD}
2867  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2868  # Includes for CPP  # Includes for CPP
2869  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2870    # default CPP includes for makedepend
2871    CPPINCLUDES = ${CPPINCLUDES}
2872  # Flags for KPP  # Flags for KPP
2873  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2874  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2581  NOOPTFILES = ${NOOPTFILES} Line 2886  NOOPTFILES = ${NOOPTFILES}
2886  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2887  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2888  LIBS = ${LIBS}  LIBS = ${LIBS}
2889  # Name of the Mekfile  # Name of the makefile
2890  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2891    # Name of the make program
2892    MAKE = ${MAKE}
2893    
2894  EOF  EOF
2895    
# Line 2597  rm -f F77srclist.tmp nonADF77srclist.tmp Line 2904  rm -f F77srclist.tmp nonADF77srclist.tmp
2904    
2905  echo >> $MAKEFILE  echo >> $MAKEFILE
2906    
2907  # add definitions for preprocessed sources  # add definitions for preprocessed sources
2908  # and note that not all systems allow case sensitive extensions  # and note that not all systems allow case sensitive extensions
2909  # hence the $FS and $FS90 here.  # hence the $FS and $FS90 here.
2910  # for fixed format f90 files we use ff90 or FF90 resp  # for fixed format f90 files we use ff90 or FF90 resp
2911  # but these are not expected to be the original source files  # but these are not expected to be the original source files
2912    
2913  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2914  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2915  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2916  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2917  echo >> $MAKEFILE  echo >> $MAKEFILE
2918  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2919  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2920    
2921  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2922    
2923  all: \$(EXECUTABLE)  all: fwd_exe_target
2924    fwd_exe_target:
2925            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2926            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2927            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2928            @-rm -f ad_config.template
2929            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2930    
2931  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2932          @echo Creating \$@ ...          @echo Creating \$@ ...
2933          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2934    
2935  depend:  depend:
2936          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2937          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2938          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2939          -rm -f makedepend.out          -rm -f makedepend.out
2940    
# Line 2629  libmitgcmuv.a: \$(OBJFILES) Line 2944  libmitgcmuv.a: \$(OBJFILES)
2944          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2945          ar d   libmitgcmuv.a main.o          ar d   libmitgcmuv.a main.o
2946    
2947    obj: \$(OBJFILES)
2948    
2949  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2950    
2951  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)  small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
# Line 2637  output.txt: \$(EXECUTABLE) Line 2954  output.txt: \$(EXECUTABLE)
2954          @printf 'running ... '          @printf 'running ... '
2955          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2956    
2957    # remove most of the files that "make" generates
2958  clean:  clean:
2959          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2960          -rm -rf *.o          -rm -rf *.o
2961          -rm -rf *.$FS *.flowdir          -rm -rf *.$FS *.flowdir
2962          -rm -rf *.f$FS90 *_mod.h *_mod.F90 *.FF90 *.mod-whirl ad_input*          -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2963          -rm -rf temp.sed  
2964    # remove most of the files that "make" and "make depend" generate
2965  Clean:  Clean:
2966          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2967          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2968          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2969          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log f90mkdepend.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2970          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log  
2971    # remove also the executable, files that "genmake2" generates (except Makefile)
2972    #         and output from a run (plus log files from testreport)
2973  CLEAN:  CLEAN:
2974          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2975            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2976            -rm -f $LOGFILE genmake_state genmake_*optfile
2977            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2978            -rm -rf mpi_headers mnc_test_*
2979          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2980          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2981          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2982          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STDOUT.* STDERR.* *diagnostics.log *.[0-9][0-9][0-9][0-9].log
2983            -rm -f datetime costfinal divided.ctrl snapshot* output_adm.txt.diva_*
2984          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000
2985          -rm -rf mnc_test_*          -rm -f oad_cp.[0-9][0-9][0-9].?????
2986    
 #eh3 Makefile: makefile  
2987  makefile:  makefile:
2988          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2989  cleanlinks:  cleanlinks:
# Line 2667  cleanlinks: Line 2992  cleanlinks:
2992  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2993  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2994          @echo Creating \$@ ...          @echo Creating \$@ ...
2995          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2996  AD_CONFIG.h:  AD_CONFIG.h:
2997          @echo Creating \$@ ...          @echo Creating \$@ ...
2998          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2999  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
3000          @echo Creating \$@ ...          @echo Creating \$@ ...
3001          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2689  if test "x$EMBED_SRC" = xt ; then Line 3014  if test "x$EMBED_SRC" = xt ; then
3014    
3015  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
3016    
3017  ##  \$(F77_PP_SRC_FILES)  ##  \$(F77_PP_SRC_FILES)
3018  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3019          @echo Creating \$@ ...          @echo Creating \$@ ...
3020          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
# Line 2710  cat >>$MAKEFILE <<EOF Line 3035  cat >>$MAKEFILE <<EOF
3035  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3036  ## %.o : %.F  ## %.o : %.F
3037    
3038    # C preprocessing and replacing the _d in constants:
3039    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3040    
3041  .F.$FS:  .F.$FS:
3042          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3043  .$FS.o:  .$FS.o:
3044          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3045    .F.o:
3046            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3047  .F90.$FS90:  .F90.$FS90:
3048          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3049  .FF90.f$FS90:  .FF90.f$FS90:
3050          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3051  .$FS90.o:  .$FS90.o:
3052          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3053  .f$FS90.o:  .f$FS90.o:
# Line 2726  cat >>$MAKEFILE <<EOF Line 3056  cat >>$MAKEFILE <<EOF
3056  .c.o:  .c.o:
3057          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3058  .flow.flowdir:  .flow.flowdir:
3059          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3060    
3061  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3062  .F.p:  .F.p:
3063          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3064  .p.$FS:  .p.$FS:
3065          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3066    
# Line 2740  EOF Line 3070  EOF
3070  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3071  #===  for TAMC/TAF  ======================  #===  for TAMC/TAF  ======================
3072    
3073  if test "x$OPENAD" = x ; then  if test "x$OPENAD" = x ; then
3074    
3075  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3076    
# Line 2749  TAF            = ${TAF} Line 3079  TAF            = ${TAF}
3079    
3080  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3081  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3082    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3083    
3084  EOF  EOF
3085    
# Line 2777  rm -f adSrcFiles.tmp Line 3108  rm -f adSrcFiles.tmp
3108  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3109    
3110  # ... AD ...  # ... AD ...
3111  adall: \$(EXE_AD)  adall: ad_exe_target
3112  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3113  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3114    
3115  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3116          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3117            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3118            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3119            @-rm -f ad_config.template
3120            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3121    
3122    ad_input_code.$FS: \$(F77_SRC_FILES) \$(AD_FLOW_FILES)
3123            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3124          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3125          -rm -f ad_config.template          @-rm -f ad_config.template
3126          @make \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3127          @make \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3128          cat \$(FLOFILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(F77_PP_SRC_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3129    
3130  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3131          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 2799  adtafonly: Line 3137  adtafonly:
3137          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3138          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3139    
3140  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES:.c=.o) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(EMBEDDED_FILES)
3141          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(C_SRC_FILES:.c=.o) ad_taf_output.o \$(LIBS)
3142    
3143  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3144          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3145          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3146    
3147  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3148          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3149    
3150  adonlyfwd:  adonlyfwd:
3151          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3152    
3153  adtrick:  adtrick:
3154          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3155    
3156    adobj: ad_taf_output.o \$(OBJFILES)
3157    
3158  # ... FTL ...  # ... FTL ...
3159  ftlall: ftl_taf  ftlall: ftl_exe_target
3160  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3161  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3162    
3163  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3164          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3165          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3166          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3167          @make \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3168          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3169          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3170    ftl_input_code.$FS: \$(F77_SRC_FILES)
3171            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3172            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3173            @-rm -f ad_config.template
3174            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3175            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3176            cat \$(AD_FLOW_FILES) \$(F77_PP_SRC_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3177    
3178  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3179          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3180          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3181          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3182    
3183  ftltafonly:  ftltafonly:
3184          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3185          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_tl.$FS
3186          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_tl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3187    
3188  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): ftl_taf_output.o \$(C_SRC_FILES:.c=.o)
3189          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(C_SRC_FILES:.c=.o) ftl_taf_output.o \$(LIBS)
3190    
3191  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3192          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3193          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3194    
3195  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3196          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3197    
3198  # ... SVD ...  # ... SVD ...
3199  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2869  svd_touch: Line 3215  svd_touch:
3215          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3216          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3217          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3218          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3219          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3220          -rm -f ftl_config.template          @-rm -f ad_config.template
3221    
3222  EOF  EOF
3223    
3224  fi  fi
3225    
3226  #===  for OpenAD  ========================  #===  for OpenAD  ========================
3227    
3228  if test "x$OPENAD" != x ; then  if test "x$OPENAD" != x ; then
3229    
3230  # ============ begin OpenAD specific section ==============  # ============ begin OpenAD specific section ==============
3231    
3232  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3233    
3234  # all the source files linked from the various locations:  # all the source files linked from the various locations:
3235  ALL_LINKED_FILES= \  ALL_LINKED_FILES= \
3236  \$(F77_SRC_FILES) \  \$(F77_SRC_FILES) \
3237  \$(C_SRC_FILES) \  \$(C_SRC_FILES) \
# Line 2937  rm -f adSrcFiles.tmp Line 3283  rm -f adSrcFiles.tmp
3283    
3284  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3285    
3286  adAll: \$(EXE_AD)  adAll: \$(EXE_AD)
3287  .PHONY: adAll  .PHONY: adAll
3288    
3289  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
# Line 2946  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod. Line 3292  CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.
3292    
3293  .PHONY: adDepend  .PHONY: adDepend
3294  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)  adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3295          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3296          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3297          -rm -f makedepend.out          -rm -f makedepend.out
3298    
# Line 2955  w2f__types.F90 \ Line 3301  w2f__types.F90 \
3301  OAD_active.F90 \  OAD_active.F90 \
3302  OAD_cp.F90 \  OAD_cp.F90 \
3303  OAD_rev.F90 \  OAD_rev.F90 \
3304  OAD_tape.F90          OAD_tape.F90 \
3305    revolve.F90
3306    
3307  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3308  iaddr.c \  iaddr.c \
# Line 2964  timeRatio.c Line 3311  timeRatio.c
3311  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)  f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3312          cat \$^ > \$@          cat \$^ > \$@
3313    
3314  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3315          cat \$^ > \$@          cat \$^ > \$@
3316    
3317  f95_test.out: f95_test_mods.f90 f95_test.f90  f95_test.out: f95_test_mods.f90 f95_test.f90
3318          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3319          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1          f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3320    
3321  AD_OBJ_FILES=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o) all_mods.xb.x2w.w2f.pp.o  ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.o \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3322    
3323  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(AD_OBJ_FILES)  AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
         @echo Creating \$@ ...  
         \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES) \$(LIBS)  
3324    
3325  # makefile debug rule  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
 openad: ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
 .PHONY: openad  
3326    
3327  # create the module files  \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3328  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3329          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk  
3330    # create sources files modules from header files containing common blocks
3331  # create the header files  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3332  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3333          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)  
3334    # create new header files with USE statements for the new modules made above
3335  # change everybody else to use the new module files:  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3336  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3337          ../OAD_support/cb2mUseModules.bash $< ${MPI}  
3338    # change the include directives of everybody to refer to  the new header files with the USE statements
3339    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3340            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3341    
3342  # makefile debug rule  # makefile debug rule
3343  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3004  ad_output.txt: \$(EXE_AD) Line 3350  ad_output.txt: \$(EXE_AD)
3350          @printf 'running ... '          @printf 'running ... '
3351          @./\$(EXE_AD) > \$@          @./\$(EXE_AD) > \$@
3352    
3353  CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
 ad_input_code.f$FS90: ../OAD_support/maxMinDefs.f \$(CB2M_AD_FILES)  
3354          cat \$^ > \$@          cat \$^ > \$@
3355    
 # strip all comments and blanks to reduce  
 # the file size in order to reduce perl's memory requirements  
 ad_input_code_sf.f$FS90 : ad_input_code.f$FS90  
         cat \$^ | sed -f ../OAD_support/strip.sed | sed -f ../OAD_support/stop2print.sed > \$@  
   
 # mfef90 preprocessing  
 # expand statement functions  
 # expose mfef90 specific substring handling  
 # add the w2f__types module  
 ad_input_code_sf.w2f.f$FS90: ad_input_code_sf.f$FS90 mfef90 whirl2f whirl2f_be w2f__types.f90  
         ./mfef90 -r8 -z -F -N132 \$<  
         mv \$<.B \$(basename \$<).B  
         ./whirl2f -openad \$(basename \$<).B  
         cat w2f__types.f90 \$(basename \$<).w2f.f > \$@  
   
3356  # canonicalizer  # canonicalizer
3357  ad_input_code_sf.w2f.pre.f$FS90: ad_input_code_sf.w2f.f$FS90 preProcess.py  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3358          ./preProcess.py -H -S \$< -o \$@          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3359    
3360    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3361    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3362            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3363    
3364  # F -> WHIRL  # F -> WHIRL
3365  # note that the canonicalized version cuts off at col 72  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3366  # doing this also for string constants which is ok as long          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
 # as we are in fixed mode and cut of exactly there.  
 # Otherwise mfef90 patches in spaces to fill up to 72 (or 132)  
 # characters respectively.  
 ad_input_code_sf.w2f.pre.B: ad_input_code_sf.w2f.pre.f$FS90 mfef90  
         ./mfef90 -r8 -z -F \$<  
         mv \$<.B \$@  
3367    
3368  # WHIRL -> XAIF  # WHIRL -> XAIF
3369  ad_input_code_sf.w2f.pre.xaif : ad_input_code_sf.w2f.pre.B whirl2xaif  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3370          ./whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3371    
3372  # XAIF -> XAIF'  # XAIF -> XAIF'
3373  ad_input_code_sf.w2f.pre.xb.xaif : ad_input_code_sf.w2f.pre.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd oadDriver  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3374          ./oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3375    
3376  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3377  ad_input_code_sf.w2f.pre.xb.x2w.B : ad_input_code_sf.w2f.pre.xb.xaif xaif2whirl  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3378          ./xaif2whirl --debug 1 --structured ad_input_code_sf.w2f.pre.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3379    
3380  # WHIRL' -> F'  # WHIRL' -> F'
3381  ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.B whirl2f whirl2f_be  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3382          ./whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3383    
3384  # insert template directives  # insert template directives
3385  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3386          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3387    
3388  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3389  # postprocess F'  # postprocess F'
3390  ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.f$FS90 postProcess.py \$(PPEXTRAS:.F=.f)  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3391          ./postProcess.py -m r -i ../OAD_support/ad_inline.f -o \$@ \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3392            # the target is a placeholder to trigger a single execution of the rule
3393            touch \$@
3394    # put this so make knows about the postprocessing output
3395    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3396    
3397  # extract all transformed modules  # link the XAIF schema files
 all_mods.xb.x2w.w2f.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
         cat \$< | sed -n '/MODULE /,/END MODULE/p' > \$@  
   
 # remove the transformed globals module from the  
 # transformed ad_input_code file  
 # and remove for now the duplicate variables  
 # and fix 2 data statements  
 ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90: ad_input_code_sf.w2f.pre.xb.x2w.w2f.td.pp.f$FS90  
         cat \$< | sed '/MODULE /,/END MODULE/d' | sed '/^      INTEGER(w2f__i4) DOLOOP_UB/d' > \$@  
   
 # setup some links  
3398  %.xsd:  %.xsd:
3399          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .          \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3400    
 mfef90:  
         \$(LN) \${OPEN64ROOT}/crayf90/sgi/mfef90 .  
   
3401  # link the support files:  # link the support files:
3402  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3403          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
3404    
3405  whirl2xaif xaif2whirl:  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
         \$(LN) \${OPENADFORTTK}/bin/\$@ .  
   
 preProcess.py postProcess.py:  
         \$(LN) \${OPENADFORTTK_BASE}/tools/SourceProcessing/\$@ .  
   
 whirl2f whirl2f_be:  
         \$(LN) \${OPEN64ROOT}/whirl2f/\$@ .  
   
 oadDriver:  
         \$(LN) \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver \$@  
3406    
3407  # ============ end OpenAD specific section ==============  # ============ end OpenAD specific section ==============
3408    
# Line 3139  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3447  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3447  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3448    
3449  # Create special header files  # Create special header files
3450  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3451  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3452      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3453  else  else
# Line 3153  else Line 3461  else
3461      fi      fi
3462  fi  fi
3463  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3464      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3465  fi  fi
3466    
   
3467  #  Write the "state" for future records  #  Write the "state" for future records
3468  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3469      printf "" > genmake_state      printf "" > genmake_state
3470      for i in $gm_state ; do      for i in $gm_state ; do
3471          t1="t2=\$$i"          t1="t2=\$$i"
3472          eval $t1          eval $t1
3473          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3474      done      done
3475  fi  fi

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