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revision 1.6 by edhill, Fri Sep 5 00:25:42 2003 UTC revision 1.251 by jmc, Sun Jul 21 23:21:36 2013 UTC
# Line 1  Line 1 
1  #!/bin/bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16  # Guess possible config options for this host  Usage: "$0" [OPTIONS]
17  find_possible_configs()  {    where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172    # Search for particular CPP #cmds associated with packages
173    # usage: test_for_package_in_cpp_options CPP_file package_name
174    test_for_package_in_cpp_options() {
175        cpp_options=$1
176        pkg=$2
177        test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178        test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179        test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180        test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
181    }
182    
183      p_PLATFORM=`uname`"-"`uname -m`  # Search for particular CPP #cmds associated with MPI
184      echo "The platform appears to be:"  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185      echo "  "$p_PLATFORM  test_for_mpi_in_cpp_eeoptions() {
186        cpp_options=$1
187      p_LN=      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      echo "test" > test      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
189      ln -s ./test link  }
190    
191    # Search for particular string in a file. Return 1 if detected, 0 if not
192    # usage: test_for_string_in_file file string
193    test_for_string_in_file() {
194        file=$1
195        strng=$2
196        grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          p_LN="ln -s"          printf "Error: In $file there is an illegal line: "
200            grep -i "$strng" $file
201            exit 99
202        fi
203        return 0
204    }
205    
206    # Read the $ROOTDIR/pkg/pkg_groups file and expand any references to
207    # the package list.
208    expand_pkg_groups() {
209        new_packages=
210        if test -r $PKG_GROUPS ; then
211            cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212            cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
213            matched=0
214            for i in $PACKAGES ; do
215                line=`grep "^ *$i" ./p2.tmp`
216                RETVAL=$?
217                if test "x$RETVAL" = x0 ; then
218                    matched=1
219                    replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                    echo "    replacing \"$i\" with:$replace"
221                    new_packages="$new_packages $replace"
222                else
223                    new_packages="$new_packages $i"
224                fi
225            done
226            PACKAGES=$new_packages
227            rm -f ./p[1,2].tmp
228            return $matched
229        else
230            echo "Warning: can't read package groups definition file: $PKG_GROUPS"
231      fi      fi
232      rm -f test link  }
233    
234      p_CPP=`which cpp`  #  Check for broken environments (eg. cygwin, MacOSX w/HFS+) that
235        #  cannot distinguish [*.F/*.F90] from [*.f/*.f90] files.
236    check_for_broken_Ff()  {
237        #  Do we have defaults for $FS and/or $FS90 ?
238        tfs=f
239        tfs9=f90
240        if test "x$FS" != x ; then
241            tfs="$FS"
242        fi
243        if test "x$FS90" != x ; then
244            tfs9="$FS90"
245        fi
246    
247        #  First check the ability to create a *.F/.f pair.
248        cat <<EOF >> genmake_hello.F
249          program hello
250          write(*,*) 'hi'
251          stop
252          end
253    EOF
254        cp genmake_hello.F "genmake_hello."$tfs > /dev/null 2>&1
255      RETVAL=$?      RETVAL=$?
256      if test "x${RETVAL}" = x0 ; then      if test "x$RETVAL" != x0 ; then
257          p_LN="ln -s"          if test "x$FS" = x ; then
258                FS='for'
259                FS90='fr9'
260                check_for_broken_Ff
261            else
262                cat <<EOF 2>&1
263    ERROR: Your file system cannot distinguish between *.F and *.f files
264      (fails the "cp" test) and this program cannot find a suitable
265      replacement extension.  Please try a different build environment or
266      contact the <MITgcm-support@mitgcm.org> list for help.
267    
268    EOF
269                exit -1
270            fi
271            return
272      fi      fi
273      rm -f test link      rm -f genmake_hello.*
274    
275      # look for possible fortran compilers      #  Check the ability of ${MAKE} and ${LN} to use the current set
276      p_FC=      #  of extensions.
277      for c in f77 g77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 ; do      cat <<EOF >> genmake_hello.F
278          which $c > /dev/null 2>&1        program hello
279          write(*,*) 'hi'
280          stop
281          end
282    EOF
283        test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
284        cat <<EOF >> $MAKEFILE
285    .SUFFIXES:
286    .SUFFIXES: .$tfs .F
287    .F.$tfs:
288            $LN \$< \$@
289    EOF
290        $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291        RETVAL=$?
292        if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293            if test "x$FS" = x ; then
294                FS='for'
295                FS90='fr9'
296                check_for_broken_Ff
297            else
298                echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299                echo "       see simple makefile: '$MAKEFILE' (left here)"
300                echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301                echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302                echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
304                exit -1
305                return
306            fi
307        fi
308        rm -f genmake_hello.* $MAKEFILE
309        test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
310    
311        #  If we make it here, use the extensions
312        FS=$tfs
313        FS90=$tfs9
314        return
315    }
316    
317    look_for_makedepend()  {
318    
319        #  The "original" makedepend is part of the Imake system that is
320        #  most often distributed with XFree86 or with an XFree86 source
321        #  package.  As a result, many machines (eg. generic Linux) do not
322        #  have a system-default "makedepend" available.  For those
323        #  systems, we have two fall-back options:
324        #
325        #    1) a makedepend implementation shipped with the cyrus-imapd
326        #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327        #    2) a local tools/xmakedepend shell script
328        #
329        #  So the choices are, in order:
330        #    1) use the user-specified program
331        #    2) use the local xmakedepend script (get all dependencies, but slower)
332        #    3) use a system-wide default
333        #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335        #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357        if test "x${MAKEDEPEND}" = x ; then
358            test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359            #  echo 'MAKEFILE="'$MAKEFILE'"'
360            cat <<EOF >> $MAKEFILE
361    #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362    #
363    #   Some "makedepend" implementations will die if they cannot
364    #   find a Makefile -- so this file is here to gives them an
365    #   empty one to find and parse.
366    EOF
367            cat <<EOF >> genmake_tc.f
368          program test
369          write(*,*) 'test'
370          stop
371          end
372    EOF
373            $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374            RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382            test -f $MAKEFILE  &&  rm -f $MAKEFILE
383            test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384            echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390                MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392            else
393                echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                echo -n "    Try to build cyrus-makedepend ..."
395                #  Try to build the cyrus implementation
396                build_cyrus_makedepend
397                RETVAL=$?
398                if test "x$RETVAL" = x0 ; then
399                    echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406                fi
407            fi
408        fi
409    }
410    
411    build_cyrus_makedepend()  {
412        echo >> $LOGFILE
413        echo "running: build_cyrus_makedepend()" >> $LOGFILE
414        rm -f ./genmake_cy_md
415        (
416            cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417                &&  ./configure > /dev/null 2>&1  \
418                &&  $MAKE > /dev/null 2>&1
419            if test -x ./makedepend.exe ; then
420                $LN ./makedepend.exe ./makedepend
421            fi
422            ./makedepend ifparser.c > /dev/null 2>&1  \
423                &&  echo "true"
424        ) > ./genmake_cy_md
425        grep true ./genmake_cy_md > /dev/null 2>&1
426        RETVAL=$?
427        rm -f ./genmake_cy_md
428        if test "x$RETVAL" = x0 ; then
429            MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431            return 0
432        else
433            echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434            return 1
435        fi
436    }
437    
438    build_embed_encode()
439    {
440        printf "  building the embed-encode utility...  "
441        if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442            if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443                echo
444                echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445                echo
446                EMBED_SRC=f
447                return 1
448            fi
449            clist="cc gcc c89 $CC"
450            for ic in $clist ; do
451                comm="$ic -o encode_files encode_files.c"
452                ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453                RETVAL=$?
454                if test "x$RETVAL" = x0 ; then
455                    echo "OK"
456                    return 0
457                fi
458            done
459            echo
460            echo "    Error: unable to build $ROOTDIR/embed_encode/encode_files"
461            echo "      so it has been disabled"
462            echo
463            EMBED_SRC=f
464            return 1
465        fi
466        echo "OK"
467    }
468    
469    #  look for possible C compilers
470    look_for_C_compilers() {
471        echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473        rm -f ./genmake_hello.c  ./genmake_hello
474        cat >> genmake_hello.c << EOF
475    #include <stdio.h>
476    int main(int argc, char **argv) {
477      printf("Hello!\n");
478      return 0;
479    }
480    EOF
481        tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483        for c in $tmp ; do
484            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485            echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487          RETVAL=$?          RETVAL=$?
488          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
489              p_FC="$p_FC $c"              echo " $c test successful" >> $LOGFILE
490                p_CC="$p_CC $c"
491          fi          fi
492      done      done
493      echo "Possible FORTRAN compilers appear to be:  "      rm -f ./genmake_hello.c ./genmake_hello
494      if test "x${p_FC}" = x ; then      if test "x${p_CC}" = x ; then
495          echo "  None found!!!"          cat 1>&2 <<EOF
496    
497    Error: No C compilers were found in your path.  Please specify one using:
498    
499        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
500        2) the CC or MITGCM_CC environment variables.
501    
502    EOF
503            exit 1
504      else      else
505          echo "  "$p_FC          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
506            if test "x$CC" = x ; then
507                CC=`echo $p_CC | $AWK '{print $1}'`
508                echo "  Setting C compiler to: "$CC
509            fi
510      fi      fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514      # look for possible MPI libraries  # Guess possible config options for this host
515      mpi_libs=  find_possible_optfile()  {
516      mpi_fort=`which mpif77 2>/dev/null`  
517      RETVAL=$?      echo >> $LOGFILE
518      if test "x${RETVAL}" = x0 ; then      echo "running: find_possible_optfile()" >> $LOGFILE
519          cat >>test.f <<EOF      tmp1=`uname`"_"`uname -m`
520        PROGRAM HELLO      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        DO 10, I=1,10      tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        PRINT *,'Hello World'      tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523     10 CONTINUE      tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        STOP      tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        END      PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530        #================================================================
531        #  look for possible FORTRAN compilers
532        echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534        p_FC=
535        rm -f ./genmake_hello.f
536        cat >> genmake_hello.f <<EOF
537          program hello
538          do i=1,3
539            print *, 'hello world : ', i
540          enddo
541          end
542  EOF  EOF
543          eval "$mpi_fort -showme test.f > out"      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              a=`cat out`              echo " $f test successful" >> $LOGFILE
550              for i in $a ; do              p_FC="$p_FC $f"
551                  case $i in          fi
552                      -*)      done
553                          mpi_libs="$mpi_libs $i" ;;      rm -f ./genmake_hello.f ./genmake_hello
554                  esac      if test "x${p_FC}" = x ; then
555              done          cat 1>&2 <<EOF
556              echo "The MPI libs appear to be:"  
557              echo "  "$mpi_libs  Error: No Fortran compilers were found in your path.  Please specify one using:
558    
559        1) an "optfile" on (eg. "-optfile=path/to/OPTFILE"),
560        2) a command-line option (eg. "-fc NAME"), or
561        3) the FC or MITGCM_FC environment variables.
562    
563    EOF
564            exit 1
565        else
566            echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
567        fi
568    
569        #  Use the first of the compilers found in the current PATH
570        #  that has a correctly-named optfile
571        if test "x$OPTFILE" = x  -a  "x$FC" = x ; then
572            for i in $p_FC ; do
573                OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574                if test -r $OPTFILE ; then
575                    echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                    break
577                fi
578            done
579        fi
580    
581        if test "x$OPTFILE" = x ; then
582            OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583            if test ! -r $OPTFILE ; then
584                 echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
         rm -f test.f out  
586      fi      fi
587    
588        if test "x$OPTFILE" = x ; then
589            cat 1>&2 <<EOF
590    
591    Error: No options file was found in:  $ROOTDIR/tools/build_options/
592      that matches this platform ("$PLATFORM") and the compilers found in
593      your path.  Please specify an "optfile" using:
594    
595        1) the command line (eg. "-optfile=path/to/OPTFILE"), or
596        2) the MITGCM_OF environment variable.
597    
598      If you need help, please contact the developers at <MITgcm-support@mitgcm.org>.
599    
600    EOF
601            exit 1
602        fi
603    }
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        #----- check for additional headers (chain of included headers)
611        listIni=$MPI_HEADER_FILES
612        echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
613        outp=$?
614        #- always check mpif.h (the only mpi-header included in standard MITgcm code)
615        if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
616        if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
617        doCheck=1 ; list2copy='' ; list2check=$listIni
618        while test $doCheck = 1 ; do
619            newList=''
620            for i in $list2check ; do
621             if test -f $MPIINCLUDEDIR/$i ; then
622                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
623                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
624               if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
625               for j in $newInc ; do
626                 echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
627                 outp=$?
628                 if test $outp != 0 ; then
629                    if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
630                    newList="$newList $j"
631                 fi
632               done
633               if test $dBug = 1 ; then echo "" ; fi
634             fi
635            done
636            if test "x$newList" = x ; then doCheck=0
637            else list2check=$newList ; list2copy="$list2copy $newList"
638            fi
639        done
640        list2copy="$MPI_HEADER_FILES $list2copy"
641        if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
642        #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
643        mkListInc=0
644        for i in $list2copy ; do
645            if test -f $MPIINCLUDEDIR/$i ; then
646                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
647                if test $i = 'mpif.h' ; then
648                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
649                fi
650                if test $mkListInc = 1 ; then
651                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
652                fi
653                if test "x$LOCAL_MPI_HEADERS" = x ; then
654                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=1
655                fi
656            fi
657        done
658  }  }
659    
660  #  Parse the package dependency information  #  Parse the package dependency information
# Line 86  get_pdepend_list()  { Line 663  get_pdepend_list()  {
663      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
664      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
665      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
666          | awk 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
667          > ./.pd_tmp          > ./.pd_tmp
668      source ./.pd_tmp      RETVAL=$?
669        if test ! "x${RETVAL}" = x0 ; then
670          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
671          exit 1
672        fi
673        . ./.pd_tmp
674      rm -f ./.pd_tmp      rm -f ./.pd_tmp
675    }
676    
677    #  Build a CPP macro to automate calling C routines from FORTRAN
678    get_fortran_c_namemangling()  {
679    
680        #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
681        if test ! "x$FC_NAMEMANGLE" = x ; then
682            return 0
683        fi
684        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
685    
686        default_nm="#define FC_NAMEMANGLE(X) X ## _"
687    
688      echo -n "PNAME = "${}      cat > genmake_test.c <<EOF
689    void tcall( char * string ) { tsub( string ); }
690    EOF
691        COMM="$CC $CFLAGS -c genmake_test.c"
692        echo ' '$COMM >> $LOGFILE
693        $COMM >> $LOGFILE 2>&1
694        RETVAL=$?
695        if test "x$RETVAL" != x0 ; then
696            FC_NAMEMANGLE=$default_nm
697            cat <<EOF>> $LOGFILE
698    
699     WARNING: C test compile fails
700     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
701     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
702    EOF
703            return 1
704        fi
705        c_tcall=`nm genmake_test.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
706        RETVAL=$?
707        if test "x$RETVAL" != x0 ; then
708            FC_NAMEMANGLE=$default_nm
709            cat <<EOF>> $LOGFILE
710    
711     WARNING: The "nm" command failed.
712     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
713     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
714    EOF
715            return 1
716        fi
717        cat > genmake_tcomp.$FS <<EOF
718          subroutine tcall( string )
719          character*(*) string
720          call tsub( string )
721          end
722    EOF
723        COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
724        echo ' '$COMM >> $LOGFILE
725        $COMM >> $LOGFILE 2>&1
726        RETVAL=$?
727        if test "x$RETVAL" != x0 ; then
728            FC_NAMEMANGLE=$default_nm
729            cat <<EOF>> $LOGFILE
730    
731     WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
732     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
734    EOF
735            return 1
736        fi
737        f_tcall=`nm genmake_tcomp.o 2>/dev/null | grep 'T ' | grep tcall | cut -d ' ' -f 3`
738        RETVAL=$?
739        if test "x$RETVAL" != x0 ; then
740            FC_NAMEMANGLE=$default_nm
741            cat <<EOF>> $LOGFILE
742    
743     WARNING: The "nm" command failed.
744     WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
745     WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
746    EOF
747            return 1
748        fi
749    
750        c_a=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
751        f_a=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 1 | sed -e 's|Y||'`
752        c_b=`echo $c_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
753        f_b=`echo $f_tcall | sed -e 's|tcall|Y Y|' | cut -d ' ' -f 2 | sed -e 's|Y||'`
754    
755        nmangle="X"
756        if test "x$c_a" != "x$f_a" ; then
757            comm="echo x$f_a | sed -e 's|x$c_a||'"
758            a=`eval $comm`
759            nmangle="$a ## $nmangle"
760        fi
761        if test "x$c_b" != "x$f_b" ; then
762            comm="echo x$f_b | sed -e 's|x$c_b||'"
763            b=`eval $comm`
764            nmangle="$nmangle ## $b"
765        fi
766    
767        FC_NAMEMANGLE="#define FC_NAMEMANGLE(X)  $nmangle"
768    
769        #  cleanup the testing files
770        rm -f genmake_tcomp.* genmake_test.*
771    
772        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
773  }  }
774    
775    check_HAVE_CLOC()  {
776        echo >> $LOGFILE
777        echo "running: check_HAVE_CLOC()" >> $LOGFILE
778        get_fortran_c_namemangling
779        cat <<EOF > genmake_tc_1.c
780    $FC_NAMEMANGLE
781    #include <stdio.h>
782    #include <stdlib.h>
783    #include <unistd.h>
784    #include <assert.h>
785    #include <sys/time.h>
786    void FC_NAMEMANGLE(cloc) ( double *curtim )
787    {
788     struct timeval tv1;
789     gettimeofday(&tv1 , (void *)NULL );
790     *curtim =  (double)((tv1.tv_usec)+(tv1.tv_sec)*1.E6);
791     *curtim = *curtim/1.E6;
792    }
793    EOF
794        COMM="$CC $CFLAGS -c genmake_tc_1.c"
795        echo $COMM >> $LOGFILE
796        $COMM >> $LOGFILE 2>&1
797        RET_C=$?
798        cat <<EOF > genmake_tc_2.$FS
799          program hello
800          REAL*8 wtime
801          external cloc
802          call cloc(wtime)
803          print *," HELLO WORLD", wtime
804          end
805    EOF
806        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
807        echo $COMM >> $LOGFILE
808        $COMM >> $LOGFILE 2>&1
809        RET_F=$?
810        test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
811        RETVAL=$?
812        if test "x$RETVAL" = x0 ; then
813            HAVE_CLOC=t
814        fi
815        rm -f genmake_tc*
816        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
817    }
818    
819  #  Explain usage  check_HAVE_SIGREG()  {
820  usage()  {      if test ! "x$HAVE_SIGREG" = x ; then
821      echo          return
822      echo "Usage: "$0" [OPTIONS]"      fi
823      echo "  where [OPTIONS] can be:"      echo >> $LOGFILE
824      echo      echo "running: check_HAVE_SIGREG()" >> $LOGFILE
825      echo "    -help | --help | -h | --h"      get_fortran_c_namemangling
826      echo "    -nooptfile | --nooptfile"      cat <<EOF > genmake_tc_1.c
827      echo "      -optfile NAME | --optfile NAME | -of NAME | --of NAME"  $FC_NAMEMANGLE
828      echo "      -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME"  #include <stdlib.h>
829      echo "    -pdepend NAME | --pdepend NAME"  #include <stdio.h>
830      echo "      -pdepend=NAME | --pdepend=NAME"  #include <signal.h>
831      echo "    -pdefault NAME | --pdefault NAME"  #include <errno.h>
832      echo "      -pdefault=NAME | --pdefault=NAME"  #include <ucontext.h>
833      echo "    -make NAME | -m NAME"  
834      echo "      --make=NAME | -m=NAME"  int * ip;
835      echo "    -makefile NAME | -mf NAME"  
836      echo "      --makefile=NAME | -mf=NAME"  static void killhandler(
837      echo "    -platform NAME | --platform NAME | -pl NAME | --pl NAME"      unsigned int sn, siginfo_t  si, struct ucontext *sc )
838      echo "      -platform=NAME | --platform=NAME | -pl=NAME | --pl=NAME"  {
839      echo "    -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME"      *ip = *ip + 1;
840      echo "      -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME"      return;
841      echo "    -mods NAME | --mods NAME | -mo NAME | --mo NAME"  }
842      echo "      -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME"  
843      echo "    -disable NAME | --disable NAME"  void FC_NAMEMANGLE(sigreg) (int * aip)
844      echo "      -disable=NAME | --disable=NAME"  {
845      echo "    -enable NAME | --enable NAME"      struct sigaction s;
846      echo "      -enable=NAME | --enable=NAME"      ip = aip;
847      echo "    -noopt NAME | --noopt NAME"      s.sa_flags = SA_SIGINFO;
848      echo "      -noopt=NAME | --noopt=NAME"      s.sa_sigaction = (void *)killhandler;
849  #    echo "    -cpp NAME | --cpp NAME"      if(sigaction (SIGTERM,&s,(struct sigaction *)NULL)) {
850  #    echo "      -cpp=NAME | --cpp=NAME"          printf("Sigaction returned error = %d\n", errno);
851      echo "    -fortran NAME | --fortran NAME | -fc NAME | --fc NAME"          exit(0);
852      echo "      -fc=NAME | --fc=NAME"      }
853      echo "    -[no]ieee | --[no]ieee"      return;
854      echo "    -[no]mpi | --[no]mpi"  }
855      echo "    -[no]jam | --[no]jam"  EOF
856      echo      COMM="$CC $CFLAGS -c genmake_tc_1.c"
857      echo "  and NAME is a string such as:"      echo $COMM >> $LOGFILE
858      echo      $COMM >> $LOGFILE 2>&1
859      echo "    --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'"      RET_C=$?
860      echo "    -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'"      cat <<EOF > genmake_tc_2.$FS
861      echo "    -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'"        program hello
862      echo        integer anint
863      echo "  which, depending upon your shell, may need to be single-quoted"        common /iv/ anint
864      echo "  if it contains spaces, dashes, or other special characters."        external sigreg
865      exit 1        call sigreg(anint)
866          end
867    EOF
868        cat genmake_tc_2.$FS >> $LOGFILE
869        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
870        echo $COMM >> $LOGFILE
871        $COMM >> $LOGFILE 2>&1
872        RETVAL=$?
873        if test "x$RETVAL" = x0 ; then
874            HAVE_SIGREG=t
875        fi
876        rm -f genmake_tc*
877        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
878    }
879    
880    check_HAVE_SETRLSTK()  {
881        if test ! "x$HAVE_SETRLSTK" = x ; then
882            return
883        fi
884        echo >> $LOGFILE
885        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
886        get_fortran_c_namemangling
887        cat <<EOF > genmake_tc_1.c
888    $FC_NAMEMANGLE
889    #include <sys/time.h>
890    #include <sys/resource.h>
891    #include <unistd.h>
892    void FC_NAMEMANGLE(setrlstk) ()
893    {
894        struct rlimit rls;
895        rls.rlim_cur = RLIM_INFINITY;
896        rls.rlim_max = RLIM_INFINITY;
897        setrlimit(RLIMIT_STACK, &rls);
898        return;
899    }
900    EOF
901        COMM="$CC $CFLAGS -c genmake_tc_1.c"
902        echo $COMM >> $LOGFILE
903        $COMM >> $LOGFILE 2>&1
904        RET_C=$?
905        cat <<EOF > genmake_tc_2.$FS
906          program hello
907          external setrlstk
908          call setrlstk()
909          end
910    EOF
911        cat genmake_tc_2.$FS >> $LOGFILE
912        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
913        echo $COMM >> $LOGFILE
914        $COMM >> $LOGFILE 2>&1
915        RETVAL=$?
916        if test "x$RETVAL" = x0 ; then
917            HAVE_SETRLSTK=t
918        fi
919        rm -f genmake_tc*
920        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
921    }
922    
923    check_HAVE_STAT()  {
924        echo >> $LOGFILE
925        echo "running: check_HAVE_STAT()" >> $LOGFILE
926        get_fortran_c_namemangling
927        cat <<EOF > genmake_tc_1.c
928    $FC_NAMEMANGLE
929    #include <stdio.h>
930    #include <stdlib.h>
931    #include <unistd.h>
932    #include <sys/stat.h>
933    #include <sys/types.h>
934    void FC_NAMEMANGLE(tfsize) ( int *nbyte )
935    {
936        char name[512];
937        struct stat astat;
938    
939        name[0] = 'a'; name[1] = '\0';
940        if (! stat(name, &astat))
941            *nbyte = (int)(astat.st_size);
942        else
943            *nbyte = -1;
944    }
945    EOF
946        COMM="$CC $CFLAGS -c genmake_tc_1.c"
947        echo $COMM >> $LOGFILE
948        $COMM >> genmake_tc.log 2>&1
949        RET_C=$?
950        cat <<EOF > genmake_tc_2.$FS
951          program hello
952          integer nbyte
953          call tfsize(nbyte)
954          print *," HELLO WORLD", nbyte
955          end
956    EOF
957        cat genmake_tc_2.$FS >> $LOGFILE
958        COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
959        echo $COMM >> $LOGFILE
960        $COMM >> genmake_tc.log 2>&1
961        RETVAL=$?
962        if test "x$RETVAL" = x0 ; then
963            HAVE_STAT=t
964        fi
965        rm -f genmake_tc*
966        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
967    }
968    
969    check_netcdf_libs()  {
970        if test ! "x$SKIP_NETCDF_CHECK" = x ; then
971            return
972        fi
973        echo >> $LOGFILE
974        echo "running: check_netcdf_libs()" >> $LOGFILE
975        cat <<EOF > genmake_tnc.F
976          program fgennc
977    #include "netcdf.inc"
978    EOF
979       #if test ! "x$MPI" = x ; then
980       #    echo '#include "mpif.h"' >> genmake_tnc.F
981       #fi
982        cat <<EOF >> genmake_tnc.F
983          integer iret, ncid, xid
984          iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
985          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
986          iret = nf_def_dim(ncid, 'X', 11, xid)
987          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
988          iret = nf_close(ncid)
989          IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
990          end
991    EOF
992        echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
993        cat genmake_tnc.F >> genmake_tnc.log
994        echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
995        RET_CPP=f
996        COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
997        echo "$COMM" >> genmake_tnc.log
998        eval $COMM > genmake_tnc.$FS 2>/dev/null  &&  RET_CPP=t
999        if test "x$RET_CPP" = xf ; then
1000            echo "  WARNING: CPP failed to pre-process the netcdf test." \
1001                >> genmake_tnc.log
1002            echo "    Please check that \$INCLUDES is properly set." \
1003                >> genmake_tnc.log
1004        fi
1005        echo "$FC $FFLAGS $FOPTIM -c genmake_tnc.$FS  \ " >> genmake_tnc.log
1006        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc.o $LIBS" >> genmake_tnc.log
1007        $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1008            &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1009        RET_COMPILE=$?
1010        cat genmake_tnc.log >> $LOGFILE
1011    
1012        #EH3  Remove test program execution for machines that either disallow
1013        #EH3  execution or cannot support it (eg. cross-compilers)
1014        #EH3
1015        #EH3 test -x ./genmake_tnc  &&  ./genmake_tnc >> genmake_tnc.log 2>&1
1016        #EH3 RETVAL=$?
1017        #EH3 if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1018    
1019        if test "x$RET_COMPILE" = x0 ; then
1020            HAVE_NETCDF=t
1021            echo "check_netcdf: successful" >> $LOGFILE
1022        else
1023            # try again with "-lnetcdf" added to the libs
1024            echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1025            echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1026            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1027            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1028            cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1029                &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1030                &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1031            RET_COMPILE=$?
1032            echo >> $LOGFILE
1033            cat genmake_tnc.log >> $LOGFILE
1034            if test "x$RET_COMPILE" = x0 ; then
1035                LIBS="$LIBS -lnetcdf"
1036                HAVE_NETCDF=t
1037                echo "check_netcdf: successful" >> $LOGFILE
1038            else
1039            # try again with "-lnetcdff" added to the libs
1040                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1041                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1042                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1043                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1044                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1045                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1046                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1047                RET_COMPILE=$?
1048                echo >> $LOGFILE
1049                cat genmake_tnc.log >> $LOGFILE
1050                if test "x$RET_COMPILE" = x0 ; then
1051                    LIBS="$LIBS -lnetcdff -lnetcdf"
1052                    HAVE_NETCDF=t
1053                    echo "check_netcdf: successful" >> $LOGFILE
1054                fi
1055            fi
1056        fi
1057        rm -f genmake_tnc*
1058        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1059    }
1060    
1061    check_lapack_libs()  {
1062        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1063            return
1064        fi
1065        echo >> $LOGFILE
1066        echo "running: check_lapack_libs()" >> $LOGFILE
1067        cat <<EOF > genmake_tla.F
1068          program fgenla
1069          integer info
1070          integer ipiv( 2 )
1071          double precision ab( 4, 2 ), b( 2 )
1072          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1073          data b / 1., 1. /
1074          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1075          IF (info .NE. 0) write(*,*) 'Error:', info
1076          write(*,*) b
1077          end
1078    EOF
1079        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1080        cat genmake_tla.F >> genmake_tla.log
1081        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1082        RET_CPP=f
1083        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1084        echo "$COMM" >> genmake_tla.log
1085        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1086        if test "x$RET_CPP" = xf ; then
1087            echo "  WARNING: CPP failed to pre-process the lapack test." \
1088                >> genmake_tla.log
1089            echo "    Please check that \$INCLUDES is properly set." \
1090                >> genmake_tla.log
1091        fi
1092        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1093        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1094        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1095            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1096        RET_COMPILE=$?
1097        cat genmake_tla.log >> $LOGFILE
1098    
1099        # test program execution not always possible (see check_netcdf_libs)
1100        #
1101        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1102        #RETVAL=$?
1103        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1104    
1105        if test "x$RET_COMPILE" = x0 ; then
1106            HAVE_LAPACK=t
1107            echo "check_lapack: successful" >> $LOGFILE
1108        else
1109            # try again with "-llapack" added to the libs
1110            echo "==> try again with added '-llapack'" > genmake_tla.log
1111            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1112            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1113            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1114            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1115                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1116                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1117            RET_COMPILE=$?
1118            echo >> $LOGFILE
1119            cat genmake_tla.log >> $LOGFILE
1120            if test "x$RET_COMPILE" = x0 ; then
1121                LIBS="$LIBS -llapack"
1122                HAVE_LAPACK=t
1123                echo "check_lapack: successful" >> $LOGFILE
1124            else
1125            # try again with "-lf77blas -lcblas" added to the libs
1126                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1127                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1128                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1129                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1130                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1131                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1132                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1133                RET_COMPILE=$?
1134                echo >> $LOGFILE
1135                cat genmake_tla.log >> $LOGFILE
1136                if test "x$RET_COMPILE" = x0 ; then
1137                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1138                    HAVE_LAPACK=t
1139                    echo "check_lapack: successful" >> $LOGFILE
1140                else
1141                # try again with "-latlas" added to the libs
1142                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1143                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1144                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1145                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1146                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1147                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1148                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1149                    RET_COMPILE=$?
1150                    echo >> $LOGFILE
1151                    cat genmake_tla.log >> $LOGFILE
1152                    if test "x$RET_COMPILE" = x0 ; then
1153                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1154                        HAVE_LAPACK=t
1155                        echo "check_lapack: successful" >> $LOGFILE
1156                    fi
1157                fi
1158            fi
1159        fi
1160        rm -f genmake_tla*
1161        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1162    }
1163    
1164    check_HAVE_FLUSH()  {
1165        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1166            return
1167        fi
1168        echo >> $LOGFILE
1169        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1170        cat <<EOF > genmake_tflsh.$FS
1171          program fgenflsh
1172          integer iounit
1173          character*9 fname
1174          iounit = 26
1175          fname = 'tmp.tflsh'
1176          open(iounit,FILE=fname,STATUS='unknown')
1177          write(iounit,*) 'genmake_tflsh: hello'
1178          call flush(iounit)
1179          close(iounit)
1180          end
1181    EOF
1182        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1183        cat genmake_tflsh.$FS >> genmake_tflsh.log
1184        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1185    
1186        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1187        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1188        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1189            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1190        RET_COMPILE=$?
1191    
1192        if test "x$RET_COMPILE" = x0 ; then
1193            HAVE_FLUSH=t
1194            #cat genmake_tflsh.log >> $LOGFILE
1195            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1196        else
1197            HAVE_FLUSH=f
1198            cat genmake_tflsh.log >> $LOGFILE
1199        fi
1200        rm -f genmake_tflsh*
1201        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1202  }  }
1203    
1204  #eh3 # This is the generic configuration.  ###############################################################################
1205  #eh3 set LN         = ( 'ln -s' )  #   Sequential part of script starts here
1206  #eh3 set CPP        = ( '/lib/cpp -P' )  ###############################################################################
 #eh3 set S64        = ( '$(TOOLSDIR)/set64bitConst.sh' )  
 #eh3 set KPP        = (  )  
 #eh3 set FC         = ( 'f77' )  
 #eh3 set LINK       = $FC  
 #eh3 set MAKEDEPEND = ( 'makedepend' )  
 #eh3 set INCLUDES   = ( -I. )  
 #eh3 set FFLAGS     = (  )  
 #eh3 set FOPTIM     = (  )  
 #eh3 set CFLAGS     = (  )  
 #eh3 set KFLAGS1    = (  )  
 #eh3 set KFLAGS2    = (  )  
 #eh3 set LIBS       = (  )  
 #eh3 set KPPFILES   = (  )  
 #eh3 if (! $?NOOPTFILES ) set NOOPTFILES = (  )  
 #eh3 if (! $?NOOPTFLAGS ) set NOOPTFLAGS = (  )  
1207    
1208  #  Set defaults here  #  Set defaults here
1209  COMMANDL="$0 $@"  COMMANDL="$0 $@"
# Line 170  PLATFORM= Line 1212  PLATFORM=
1212  LN=  LN=
1213  S64=  S64=
1214  KPP=  KPP=
1215  FC=  #FC=
1216    #CC=gcc
1217    #CPP=
1218  LINK=  LINK=
1219    DEFINES=
1220  PACKAGES=  PACKAGES=
1221  ENABLE=  ENABLE=
1222  DISABLE=  DISABLE=
1223  MAKEFILE=  # MAKEFILE=
1224  MAKEDEPEND=  # MAKEDEPEND=
1225  PDEPEND=  PKG_DEPEND=
1226    PKG_GROUPS=
1227  DUMPSTATE=f  DUMPSTATE=f
 PDEFAULT=  
1228  OPTFILE=  OPTFILE=
1229  INCLUDES="-I."  INCLUDES="-I. $INCLUDES"
1230  FFLAGS=  FFLAGS=
1231  FOPTIM=  FOPTIM=
1232    FEXTRAFLAGS=
1233    USE_EXTENDED_SRC=
1234    EXTENDED_SRC_FLAG=
1235    GET_FC_VERSION=
1236  CFLAGS=  CFLAGS=
1237  KFLAGS1=  KFLAGS1=
1238  KFLAGS2=  KFLAGS2=
1239    #LDADD=
1240  LIBS=  LIBS=
1241  KPPFILES=  KPPFILES=
1242  NOOPTFILES=  NOOPTFILES=
1243  NOOPTFLAGS=  NOOPTFLAGS=
1244    MPI=
1245    MPIPATH=
1246    OMP=
1247    OMPFLAG=
1248    USE_R4=
1249    TS=
1250    PAPIS=
1251    PCLS=
1252    FOOLAD=
1253    PAPI=
1254    PCL=
1255    HPMT=
1256    GSL=
1257    DEVEL=
1258    HAVE_TEST_L=
1259    
1260    # comment this line out to enable lapack test
1261    SKIP_LAPACK_CHECK=t
1262    
1263    # DEFINES checked by test compilation or command-line
1264    HAVE_SYSTEM=
1265    HAVE_FDATE=
1266    FC_NAMEMANGLE=
1267    HAVE_CLOC=
1268    # HAVE_SETRLSTK=
1269    HAVE_STAT=
1270    HAVE_NETCDF=
1271    HAVE_ETIME=
1272    IGNORE_TIME=
1273    HAVE_LAPACK=
1274    HAVE_FLUSH=
1275    
1276  MODS=  MODS=
1277  TOOLSDIR=  TOOLSDIR=
1278  SOURCEDIRS=  SOURCEDIRS=
1279  INCLUDEDIRS=  INCLUDEDIRS=
1280    STANDARDDIRS="USE_THE_DEFAULT"
1281    
1282    #- local config file
1283    gm_local="genmake_local"
1284    
1285    G2ARGS=
1286    BASH=
1287  PWD=`pwd`  PWD=`pwd`
1288  MAKE=make  test "x$MAKE" = x  &&  MAKE=make
1289  THISHOSTNAME=`hostname`  test "x$AWK" = x   &&  AWK=awk
1290    EMBED_SRC=
1291    THISHOST=`hostname`
1292  THISCWD=`pwd`  THISCWD=`pwd`
1293  THISDATE=`date`  THISDATE=`date`
1294    THISUSER=`echo $USER`
1295    THISVER=
1296  MACHINE=`uname -a`  MACHINE=`uname -a`
1297    EXECUTABLE=
1298    EXEHOOK=
1299    EXEDIR=
1300    IEEE=
1301    if test "x$MITGCM_IEEE" != x ; then
1302        IEEE=$MITGCM_IEEE
1303    fi
1304    FS=
1305    FS90=
1306    
1307    AUTODIFF_PKG_USED=f
1308    AD_OPTFILE=
1309    TAF=
1310    AD_TAF_FLAGS=
1311    FTL_TAF_FLAGS=
1312    SVD_TAF_FLAGS=
1313    TAF_EXTRA=
1314    TAMC=
1315    AD_TAMC_FLAGS=
1316    FTL_TAF_FLAGS=
1317    SVD_TAMC_FLAGS=
1318    TAMC_EXTRA=
1319    
1320    DIVA=
1321    MPIINCLUDEDIR=
1322    MPI_HEADER_FILES=
1323    LOCAL_MPI_HEADERS=
1324    
1325  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1326  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE NOOPT"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1327  gm_s2="FC IEEE MPI JAM DUMPSTATE"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1328    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1329    
1330  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1331  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1332  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1333  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOSTNAME THISDATE MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1334    gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1335    gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1336    
1337    #  The following are all related to adjoint/tangent-linear stuff
1338    gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1339    gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1340    gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1341    
1342    gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1343    gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1344    
1345    cat <<EOF
1346    
1347    GENMAKE :
1348    
1349    A program for GENerating MAKEfiles for the MITgcm project.
1350       For a quick list of options, use "genmake2 -h"
1351    or for more detail see the Developer's HOWTO manual at:
1352       http://mitgcm.org/public/docs.html
1353    
1354  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5"  EOF
1355    
1356    LOGFILE="genmake.log"
1357    #- clean-up previous genmake logfiles:
1358    rm -f genmake_state genmake_*optfile $LOGFILE
1359    
 echo  
1360  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="./gm_local"  
 echo -n "  getting local config information:  "  
 if test -e $gm_local ; then  
     echo "using $gm_local"  
     source $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1361    
1362  #  echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1363  #parse_options  #parse_options
   
1364  ac_prev=  ac_prev=
1365  for ac_option ; do  for ac_option in "$@" ; do
1366    
1367        G2ARGS="$G2ARGS \"$ac_option\""
1368    
1369      # If the previous option needs an argument, assign it.      # If the previous option needs an argument, assign it.
1370      if test -n "$ac_prev"; then      if test -n "$ac_prev"; then
# Line 250  for ac_option ; do Line 1372  for ac_option ; do
1372          ac_prev=          ac_prev=
1373          continue          continue
1374      fi      fi
1375        
1376      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1377        
1378      case $ac_option in      case $ac_option in
1379            
1380          -help | --help | -h | --h)          -help | --help | -h | --h)
1381              usage ;;              usage ;;
1382            
1383          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1384              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1385          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1386              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1387          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1388              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1389            
1390            -adoptfile | --adoptfile | -adof | --adof)
1391                ac_prev=AD_OPTFILE ;;
1392            -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1393                AD_OPTFILE=$ac_optarg ;;
1394    
1395          -pdepend | --pdepend)          -pdepend | --pdepend)
1396              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1397          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1398              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1399            
1400          -pdefault | --pdefault)          -pgroups | --pgroups)
1401              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1402          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1403              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1404            
1405          -make | --make | -m | --m)          -make | --make | -m | --m)
1406              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1407          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1408              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1409            
1410          -makefile | --makefile | -ma | --ma)          -bash | --bash)
1411                ac_prev=BASH ;;
1412            -bash=* | --bash=*)
1413                BASH=$ac_optarg ;;
1414    
1415            -makedepend | --makedepend | -md | --md)
1416                ac_prev=MAKEDEPEND ;;
1417            -makedepend=* | --makedepend=* | -md=* | --md=*)
1418                MAKEDEPEND=$ac_optarg ;;
1419    
1420            -makefile | --makefile | -mf | --mf)
1421              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1422          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1423              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1424            
1425          -platform | --platform | -pl | --pl)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1426              ac_prev=PLATFORM ;;              echo "ERROR: The platform option has been removed.  Please specify"
1427          -platform=* | --platform=* | -pl=* | --pl=*)              echo "  the build options using the \"optfile\" mechanism."
1428              PLATFORM=$ac_optarg ;;              echo
1429                        usage
1430                ;;
1431    
1432          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1433              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1434          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1435              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1436            
1437          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1438              ac_prev=MODS ;;              ac_prev=MODS ;;
1439          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1440              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1441            
1442          -disable | --disable)          -disable | --disable)
1443              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1444          -disable=* | --disable=*)          -disable=* | --disable=*)
1445              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1446            
1447          -enable | --enable)          -enable | --enable)
1448              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1449          -enable=* | --enable=*)          -enable=* | --enable=*)
1450              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1451            
1452          -noopt | --noopt)          -standarddirs | --standarddirs)
1453              ac_prev=NOOPT ;;              ac_prev=STANDARDDIRS ;;
1454          -noopt=* | --noopt=*)          -standarddirs=* | --standarddirs=*)
1455              NOOPT=$ac_optarg ;;              STANDARDDIRS=$ac_optarg ;;
1456            
1457  #           -cpp | --cpp)  #           -cpp | --cpp)
1458  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1459  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1460  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1461                
1462            -cc | --cc)
1463                ac_prev=CC ;;
1464            -cc=* | --cc=*)
1465                CC=$ac_optarg ;;
1466    
1467          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1468              ac_prev=FC ;;              ac_prev=FC ;;
1469          -fc=* | --fc=*)          -fc=* | --fc=*)
1470              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1471            
1472            -fs | --fs)
1473                ac_prev=FS ;;
1474            -fs=* | --fs=*)
1475                FS=$ac_optarg ;;
1476    
1477            -fs90 | --fs90)
1478                ac_prev=FS90 ;;
1479            -fs90=* | --fs90=*)
1480                FS90=$ac_optarg ;;
1481    
1482            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1483                USE_R4=true ;;
1484    
1485          -ieee | --ieee)          -ieee | --ieee)
1486              IEEE=1 ;;              IEEE=true ;;
1487          -noieee | --noieee)          -noieee | --noieee)
1488              IEEE=0 ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1489                    -devel | --devel)
1490                IEEE=true ; DEVEL=true ;;
1491            -gsl | --gsl)
1492                GSL=true ;;
1493    
1494            -ts | --ts)
1495                TS=true ;;
1496            -papis | --papis)
1497                PAPIS=true ;;
1498            -pcls | --pcls)
1499                PCLS=true ;;
1500            -foolad | --foolad)
1501                FOOLAD=true ;;
1502            -papi | --papi)
1503                PAPI=true ;;
1504            -pcl | --pcl)
1505                PCL=true ;;
1506            -hpmt | --hpmt)
1507                HPMT=true ;;
1508    
1509          -mpi | --mpi)          -mpi | --mpi)
1510              MPI=1 ;;              MPI=true ;;
1511          -nompi | --nompi)          -mpi=* | --mpi=*)
1512              MPI=0 ;;              MPIPATH=$ac_optarg
1513                        MPI=true ;;
1514          -jam | --jam)  
1515              JAM=1 ;;          -omp | --omp)
1516          -nojam | --nojam)              OMP=true ;;
1517              JAM=0 ;;          -omp=* | --omp=*)
1518                        OMPFLAG=$ac_optarg
1519                OMP=true ;;
1520    
1521          -ds | --ds)          -ds | --ds)
1522              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1523            
1524            -extra_flag | --extra_flag)
1525                ac_prev=FEXTRAFLAGS ;;
1526            -extra_flag=* | --extra_flag=*)
1527                FEXTRAFLAGS=$ac_optarg ;;
1528    
1529            -taf_extra | --taf_extra)
1530                ac_prev=TAF_EXTRA ;;
1531            -taf_extra=* | --taf_extra=*)
1532                TAF_EXTRA=$ac_optarg ;;
1533    
1534            -tamc_extra | --tamc_extra)
1535                ac_prev=TAMC_EXTRA ;;
1536            -tamc_extra=* | --tamc_extra=*)
1537                TAMC_EXTRA=$ac_optarg ;;
1538    
1539            -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1540                IGNORE_TIME="-DIGNORE_TIME" ;;
1541    
1542            -es | --es | -embed-source | --embed-source)
1543                EMBED_SRC=t ;;
1544    
1545          -*)          -*)
1546              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1547              usage              usage
1548              ;;              ;;
1549            
1550          *)          *)
1551              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1552              usage              usage
1553              ;;              ;;
1554            
1555      esac      esac
1556        
1557  done  done
1558    
1559  echo "  getting OPTFILE information:  "  printf "  getting local config information:  "
1560  if test "x${OPTFILE}" = x ; then  if test -f $gm_local ; then
1561      echo "Warning: no OPTFILE specified so we'll look for possible settings"      echo "using $gm_local"
1562      printf "\n===  Searching for possible settings for OPTFILE  ===\n"      . $gm_local
     find_possible_configs  
1563  else  else
1564      if test "x$OPTFILE" = xNONE ; then      echo "none found"
         echo "    OPTFILE=NONE so we'll try to use default settings"  
     else  
         if test -f "$OPTFILE" -a -r "$OPTFILE" ; then  
             echo "    using OPTFILE=\"$OPTFILE\""  
             source "$OPTFILE"  
             RETVAL=$?  
             if test "x$RETVAL" != x0 ; then  
                 echo -n "Error: failed to source OPTFILE \"$OPTFILE\""  
                 echo "--please check that variable syntax is bash-compatible"  
                 exit 1  
             fi  
             if test "x$DUMPSTATE" != xf ; then  
                 cp -f $OPTFILE "gm_optfile"  
             fi  
         else  
             echo "Error: can't read OPTFILE=\"$OPTFILE\""  
             exit 1  
         fi  
     fi  
1565  fi  fi
1566    
1567  printf "\n===  Setting defaults  ===\n"  if test -f ./.genmakerc ; then
1568  echo -n "  Adding MODS directories:  "      echo
1569  for d in $MODS ; do      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1570      if test ! -d $d ; then      echo "  file.  This file format is no longer supported.  For directions on"
1571          echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1572          echo "Error: MODS directory \"$d\" not found!"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1573          exit 1      echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1574      else      echo "WARNING: ignore \"./.genmakerc\" and continue."
1575          echo -n " $d"      echo
         SOURCEDIRS="$SOURCEDIRS $d"  
         INCLUDEDIRS="$INCLUDEDIRS $d"  
     fi  
 done  
 echo  
   
 if test "x$MAKEFILE" = x ; then  
     MAKEFILE="Makefile"  
 fi  
 if test "x${PLATFORM}" = x ; then  
     PLATFORM=$p_PLATFORM  
1576  fi  fi
1577    
1578    #  Find the MITgcm ${ROOTDIR}
1579  if test "x${ROOTDIR}" = x ; then  if test "x${ROOTDIR}" = x ; then
1580      if test "${PWD##/*/}" = "bin" -a -d ../model -a -d ../eesup -a -d ../pkg ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
1581        if test "x$tmp" = "xbin" -a -d ../model -a -d ../eesupp -a -d ../pkg ; then
1582          ROOTDIR=".."          ROOTDIR=".."
1583      else      else
1584          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1585              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1586                  ROOTDIR=$d                  ROOTDIR=$d
1587                  echo -n "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1588                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1589                  break                  break
1590              fi              fi
1591          done          done
# Line 432  if test ! -d ${ROOTDIR} ; then Line 1602  if test ! -d ${ROOTDIR} ; then
1602      exit 1      exit 1
1603  fi  fi
1604    
1605    #  Find the MITgcm ${THISVER}
1606    version_file="${ROOTDIR}/doc/tag-index"
1607    if test -f $version_file ; then
1608        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1609    #-  remove ./BUILD_INFO.h file if older than version_file
1610        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1611            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1612            rm -f ./BUILD_INFO.h
1613        fi
1614    fi
1615    
1616    if test "x$MAKEFILE" = x ; then
1617        MAKEFILE="Makefile"
1618    fi
1619    
1620    echo "  getting OPTFILE information:"
1621    if test "x${OPTFILE}" = x ; then
1622        if test "x$MITGCM_OF" = x ; then
1623            echo "Warning: no OPTFILE specified so we'll look for possible settings"
1624            printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1625            find_possible_optfile
1626        else
1627            OPTFILE=$MITGCM_OF
1628        fi
1629    fi
1630    if test "x$OPTFILE" != xNONE ; then
1631        if test -f "$OPTFILE" -a -r "$OPTFILE" ; then
1632            echo "    using OPTFILE=\"$OPTFILE\""
1633            . "$OPTFILE"
1634            RETVAL=$?
1635            if test "x$RETVAL" != x0 ; then
1636                printf "Error: failed to source OPTFILE \"$OPTFILE\""
1637                echo "--please check that variable syntax is bash-compatible"
1638                exit 1
1639            fi
1640            if test "x$DUMPSTATE" = xt ; then
1641                cp -f $OPTFILE "genmake_optfile"
1642            fi
1643        else
1644            echo "Error: can't read OPTFILE=\"$OPTFILE\""
1645            exit 1
1646        fi
1647    fi
1648    
1649    echo "  getting AD_OPTFILE information:"
1650    if test "x${AD_OPTFILE}" = x ; then
1651        if test "x$MITGCM_AD_OF" = x ; then
1652            AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
1653        else
1654            AD_OPTFILE=$MITGCM_AD_OF
1655        fi
1656    fi
1657    if test "x${AD_OPTFILE}" != xNONE ; then
1658        if test -f "$AD_OPTFILE" -a -r "$AD_OPTFILE" ; then
1659            echo "    using AD_OPTFILE=\"$AD_OPTFILE\""
1660            . "$AD_OPTFILE"
1661            RETVAL=$?
1662            if test "x$RETVAL" != x0 ; then
1663                printf "Error: failed to source AD_OPTFILE \"$AD_OPTFILE\""
1664                echo "--please check that variable syntax is bash-compatible"
1665                exit 1
1666            fi
1667            if test "x$DUMPSTATE" = xt ; then
1668                cp -f $AD_OPTFILE "genmake_ad_optfile"
1669            fi
1670        else
1671            echo "Error: can't read AD_OPTFILE=\"$AD_OPTFILE\""
1672            exit 1
1673        fi
1674    fi
1675    
1676    #====================================================================
1677    #  Set default values if not set by the optfile
1678    #
1679    #  Check that FC, CC, LINK, CPP, S64, LN, and MAKE are defined.  If not,
1680    #  either set defaults or complain and abort!
1681    if test ! "x$BASH" = x ; then
1682        # add a trailing space so that it works within the Makefile syntax (see below)
1683        BASH="$BASH "
1684    fi
1685    if test "x$FC" = x ; then
1686        cat <<EOF 1>&2
1687    
1688    Error: no Fortran compiler: please specify using one of the following:
1689      1) within the options file ("FC=...") as specified by "-of=OPTFILE"
1690      2) the "-fc=XXX" command-line option
1691      3) the "./genmake_local" file
1692    EOF
1693        exit 1
1694    fi
1695    if test "x$GET_FC_VERSION" != x ; then
1696      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1697      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1698      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1699      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1700      if test -s genmake_fc_vers1 ; then
1701        cat genmake_fc_vers1 >> $LOGFILE
1702      else
1703        cat genmake_fc_vers2 >> $LOGFILE
1704      fi
1705      echo "<-- compiler version ----" >> $LOGFILE
1706      rm -f genmake_fc_vers1 genmake_fc_vers2
1707    fi
1708    
1709    if test "x$CC" = x ; then
1710        look_for_C_compilers
1711    fi
1712    
1713    if test "x$LINK" = x ; then
1714        LINK=$FC
1715    fi
1716    if test "x$MAKE" = x ; then
1717        MAKE="make"
1718    fi
1719    if test "x$CPP" = x ; then
1720        CPP="cpp -traditional -P"
1721    fi
1722    #EH3 === UGLY ===
1723    #  The following is an ugly little hack to check for $CPP in /lib/ and
1724    #  it should eventually be replaced with a more general function that
1725    #  searches a combo of the user's path and a list of "usual suspects"
1726    #  to find the correct location for binaries such as $CPP.
1727    for i in " " "/lib/" ; do
1728        echo "#define A a" | $i$CPP > test_cpp 2>&1 && CPP=$i$CPP
1729    done
1730    #EH3 === UGLY ===
1731    echo "#define A a" | $CPP > test_cpp 2>&1
1732    RETVAL=$?
1733    if test "x$RETVAL" != x0 ; then
1734        cat <<EOF 1>&2
1735    
1736    Error: C pre-processor "$CPP" failed the test case: please specify using:
1737    
1738      1) within the options file ("CPP=...") as specified by "-of=OPTFILE"
1739      2) the "./genmake_local" file
1740      3) with the CPP environment variable
1741    
1742    EOF
1743        exit 1
1744    else
1745        rm -f test_cpp
1746    fi
1747    
1748    look_for_makedepend
1749    
1750    #  Check that soft-link command is set and usable
1751    if test "x$LN" = x ; then
1752        LN="ln -s"
1753    fi
1754    echo "test" > genmake_test_ln
1755    $LN genmake_test_ln genmake_tlink
1756    RETVAL=$?
1757    if test "x$RETVAL" != x0 ; then
1758        cat <<EOF 1>&2
1759    
1760    Error: The command "$LN" failed -- please specify a working soft-link
1761      command in the optfile.
1762    
1763    EOF
1764        exit 1
1765    fi
1766    test -L genmake_tlink > /dev/null 2>&1
1767    RETVAL=$?
1768    if test "x$RETVAL" = x0 ; then
1769        HAVE_TEST_L=t
1770    fi
1771    rm -f genmake_test_ln genmake_tlink
1772    
1773    #  Check for broken *.F/*.f handling and fix if possible
1774    check_for_broken_Ff
1775    
1776    if test ! "x$MPI" = x ; then
1777          echo "  Turning on MPI cpp macros"
1778          DEFINES="$DEFINES -DALLOW_USE_MPI"
1779    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1780    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1781    fi
1782    if test ! "x$OMP" = x ; then
1783          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1784          FFLAGS="$FFLAGS $OMPFLAG"
1785          F90FLAGS="$F90FLAGS $OMPFLAG"
1786          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1787    fi
1788    
1789    if test ! "x$USE_R4" = x ; then
1790          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1791          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1792    fi
1793    
1794    if test ! "x$TS" = x ; then
1795          echo "  Turning on timing per timestep"
1796          if test ! "x$FOOLAD" = x ; then
1797                DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1798          else
1799                DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1800          fi
1801          PACKAGES="$PACKAGES showflops"
1802    fi
1803    if test ! "x$PAPIS" = x ; then
1804          echo "  Turning on PAPI flop summary per timestep"
1805          echo "  Please make sure PAPIINC, PAPILIB are defined"
1806          if test ! "x$FOOLAD" = x ; then
1807                DEFINES="$DEFINES -DUSE_PAPI_FLOPS_SFP"
1808          else
1809                DEFINES="$DEFINES -DUSE_PAPI_FLOPS"
1810          fi
1811          INCLUDES="$INCLUDES $PAPIINC"
1812          LIBS="$LIBS $PAPILIB"
1813          PACKAGES="$PACKAGES showflops"
1814    fi
1815    if test ! "x$PCLS" = x ; then
1816          echo "  Turning on PCL counter summary per timestep"
1817          echo "  Please make sure PCLINC, PCLLIB are defined"
1818          if test ! "x$FOOLAD" = x ; then
1819                DEFINES="$DEFINES -DUSE_PCL_FLOPS_SFP"
1820          else
1821                DEFINES="$DEFINES -DUSE_PCL_FLOPS"
1822          fi
1823          INCLUDES="$INCLUDES $PCLINC"
1824          LIBS="$LIBS $PCLLIB"
1825          PACKAGES="$PACKAGES showflops"
1826    fi
1827    if test ! "x$PAPI" = x ; then
1828          if test ! "x$PAPIS" = x ; then
1829              echo "  PAPI performance analysis and flop summary per timestep cannot co-exist!"
1830              echo "  Sticking with PAPI flop summary per timestep!"
1831          else
1832              echo "  Turning on performance analysis with PAPI"
1833              echo "  Please make sure PAPIINC, PAPILIB are defined"
1834              DEFINES="$DEFINES -DUSE_PAPI"
1835              INCLUDES="$INCLUDES $PAPIINC"
1836              LIBS="$LIBS $PAPILIB"
1837          fi
1838    fi
1839    if test ! "x$PCL" = x ; then
1840          if test ! "x$PCLS" = x ; then
1841              echo "  PCL performance analysis and flop summary per timestep cannot co-exist!"
1842              echo "  Sticking with PCL flop summary per timestep!"
1843          else
1844              echo "  Turning on performance analysis with PCL"
1845              echo "  Please make sure PCLINC, PCLLIB are defined"
1846              DEFINES="$DEFINES -DUSE_PCL"
1847              INCLUDES="$INCLUDES $PCLINC"
1848              LIBS="$LIBS $PCLLIB"
1849          fi
1850    fi
1851    if test ! "x$HPMT" = x ; then
1852          if test ! "x$PAPI" = x ; then
1853              echo "  PAPI and the HPM Toolkit cannot co-exist!"
1854              echo "  Sticking with PAPI!"
1855          else
1856            if test ! "x$PCL" = x ; then
1857              echo "  PCL and the HPM Toolkit cannot co-exist!"
1858              echo "  Sticking with PCL!"
1859            else
1860              echo "  Turning on performance analysis with the HPM Toolkit"
1861              echo "  Please make sure HPMTINC, HPMTLIB are defined"
1862              DEFINES="$DEFINES -DUSE_LIBHPM"
1863              INCLUDES="$INCLUDES $HPMTINC"
1864              LIBS="$LIBS $HPMTLIB"
1865            fi
1866          fi
1867    fi
1868    if test ! "x$GSL" = x ; then
1869          echo "  Turning on use of GSL to control floating point calculations"
1870          echo "  Please make sure GSLINC, GSLLIB are defined"
1871          DEFINES="$DEFINES -DUSE_GSL_IEEE"
1872          INCLUDES="$INCLUDES $GSLINC"
1873          LIBS="$LIBS $GSLLIB"
1874    fi
1875    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1876    if test ! "x$USE_EXTENDED_SRC" = x ; then
1877          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1878          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1879    fi
1880    
1881    printf "\n===  Checking system libraries  ===\n"
1882    printf "  Do we have the system() command using $FC...  "
1883    cat > genmake_tcomp.$FS <<EOF
1884          program hello
1885          call system('echo hi')
1886          end
1887    EOF
1888    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1889    RETVAL=$?
1890    if test "x$RETVAL" = x0 ; then
1891        HAVE_SYSTEM=t
1892        DEFINES="$DEFINES -DHAVE_SYSTEM"
1893        echo "yes"
1894    else
1895        HAVE_SYSTEM=
1896        echo "no"
1897    fi
1898    rm -f genmake_tcomp*
1899    
1900    printf "  Do we have the fdate() command using $FC...  "
1901    cat > genmake_tcomp.$FS <<EOF
1902          program hello
1903          CHARACTER*(128) string
1904          string = ' '
1905          call fdate( string )
1906          print *, string
1907          end
1908    EOF
1909    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1910    RETVAL=$?
1911    if test "x$RETVAL" = x0 ; then
1912        HAVE_FDATE=t
1913        DEFINES="$DEFINES -DHAVE_FDATE"
1914        echo "yes"
1915    else
1916        HAVE_FDATE=
1917        echo "no"
1918    fi
1919    rm -f genmake_tcomp*
1920    
1921    printf "  Do we have the etime() command using $FC...  "
1922    cat > genmake_tcomp.$FS <<EOF
1923          program hello
1924          REAL*4 ACTUAL, TARRAY(2)
1925          EXTERNAL ETIME
1926          REAL*4 ETIME
1927          actual = etime( tarray )
1928          print *, tarray
1929          end
1930    EOF
1931    $FC $FFLAGS -o genmake_tcomp genmake_tcomp.$FS > genmake_tcomp.log 2>&1
1932    RETVAL=$?
1933    if test "x$RETVAL" = x0 ; then
1934        HAVE_ETIME=t
1935        DEFINES="$DEFINES -DHAVE_ETIME"
1936        echo "yes"
1937    else
1938        HAVE_ETIME=
1939        echo "no"
1940    fi
1941    rm -f genmake_tcomp*
1942    
1943    printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1944    check_HAVE_CLOC
1945    if test "x$HAVE_CLOC" != x ; then
1946        DEFINES="$DEFINES -DHAVE_CLOC"
1947        echo "yes"
1948    else
1949        echo "no"
1950        if test "x$EMBED_SRC" = xt ; then
1951            echo "    WARNING: you requested file embedding but it has"
1952            echo "      been disabled since C code cannot be called"
1953            EMBED_SRC=
1954        fi
1955    fi
1956    rm -f genmake_t*
1957    
1958    printf "  Can we unlimit the stack size using $FC...  "
1959    check_HAVE_SETRLSTK
1960    if test "x$HAVE_SETRLSTK" = xt ; then
1961        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1962        echo "yes"
1963    else
1964        echo "no"
1965    fi
1966    rm -f genmake_t*
1967    
1968    printf "  Can we register a signal handler using $FC...  "
1969    check_HAVE_SIGREG
1970    if test "x$HAVE_SIGREG" = xt ; then
1971        DEFINES="$DEFINES -DHAVE_SIGREG"
1972        echo "yes"
1973    else
1974        echo "no"
1975    fi
1976    rm -f genmake_t*
1977    
1978    printf "  Can we use stat() through C calls...  "
1979    check_HAVE_STAT
1980    if test "x$HAVE_STAT" != x ; then
1981        DEFINES="$DEFINES -DHAVE_STAT"
1982        echo "yes"
1983    else
1984        echo "no"
1985    fi
1986    rm -f genmake_t*
1987    
1988    printf "  Can we create NetCDF-enabled binaries...  "
1989    check_netcdf_libs
1990    if test "x$HAVE_NETCDF" != x ; then
1991        DEFINES="$DEFINES -DHAVE_NETCDF"
1992        echo "yes"
1993    else
1994        echo "no"
1995    fi
1996    
1997    printf "  Can we create LAPACK-enabled binaries...  "
1998    check_lapack_libs
1999    if test "x$HAVE_LAPACK" != x ; then
2000        DEFINES="$DEFINES -DHAVE_LAPACK"
2001        echo "yes"
2002    else
2003        echo "no"
2004    fi
2005    
2006    printf "  Can we call FLUSH intrinsic subroutine...  "
2007    check_HAVE_FLUSH
2008    if test "x$HAVE_FLUSH" = xt ; then
2009        DEFINES="$DEFINES -DHAVE_FLUSH"
2010        echo "yes"
2011    else
2012        echo "no"
2013    fi
2014    
2015    DEFINES="$DEFINES $IGNORE_TIME"
2016    if test "x$EMBED_SRC" = xt ; then
2017        build_embed_encode
2018    fi
2019    if test "x$EMBED_SRC" = xt ; then
2020        ENABLE="$ENABLE embed_files"
2021    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2022    fi
2023    
2024    printf "\n===  Setting defaults  ===\n"
2025    printf "  Adding MODS directories: "
2026    for d in $MODS ; do
2027        if test ! -d $d ; then
2028            echo
2029            echo "Error: MODS directory \"$d\" not found!"
2030            exit 1
2031        else
2032            printf "$d "
2033            SOURCEDIRS="$SOURCEDIRS $d"
2034            INCLUDEDIRS="$INCLUDEDIRS $d"
2035        fi
2036    done
2037    echo
2038    
2039    #if test "x${PLATFORM}" = x ; then
2040    #    PLATFORM=$p_PLATFORM
2041    #fi
2042    
2043  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2044      if test "${PWD##/*/}" = "bin" -a -d ../exe -a $ROOTDIR = .. ; then      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
2045        if test "x$tmp" = "xbin" -a -d ../exe -a $ROOTDIR = .. ; then
2046          EXEDIR=../exe          EXEDIR=../exe
2047      else      else
2048          EXEDIR=.          EXEDIR=.
# Line 448  if test "x${TOOLSDIR}" = x ; then Line 2057  if test "x${TOOLSDIR}" = x ; then
2057      TOOLSDIR="$ROOTDIR/tools"      TOOLSDIR="$ROOTDIR/tools"
2058  fi  fi
2059  if test ! -d ${TOOLSDIR} ; then  if test ! -d ${TOOLSDIR} ; then
2060      echo "Error: the specified $TOOLSDIR (\"$TOOLSDIR\") does not exist!"      echo "Error: the specified TOOLSDIR (\"$TOOLSDIR\") does not exist!"
2061      exit 1      exit 1
2062  fi  fi
2063    if test "x$S64" = x ; then
2064        echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.sh > /dev/null 2>&1
2065        RETVAL=$?
2066        if test "x${RETVAL}" = x0 ; then
2067            S64='$(TOOLSDIR)/set64bitConst.sh'
2068        else
2069            echo "3.0 _d 3" | ${TOOLSDIR}/set64bitConst.csh > /dev/null 2>&1
2070            RETVAL=$?
2071            if test "x${RETVAL}" = x0 ; then
2072                S64='$(TOOLSDIR)/set64bitConst.csh'
2073            else
2074                cat <<EOF
2075    
2076    ERROR: neither of the two default scripts:
2077    
2078        ${TOOLSDIR}/set64bitConst.sh
2079        ${TOOLSDIR}/set64bitConst.csh
2080    
2081      are working so please check paths or specify (with \$S64) a
2082      working version of this script.
2083    
2084    EOF
2085                exit 1
2086            fi
2087        fi
2088    fi
2089    THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSDIR':\$(TOOLSDIR):'`
2090    
2091  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2092    
2093    #  Set Standard Code Directories:
2094    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2095        STANDARDDIRS="eesupp model"
2096    fi
2097    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2098    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2099    ckM=$?
2100    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2101    ckE=$?
2102    if test $ckM = 0 -a $ckE = 1 ; then
2103        STANDARDDIRS="$STANDARDDIRS eesupp"
2104    fi
2105    
2106  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2107  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2108  #  they appear as regular source code  #  they appear as regular source code
2109  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2110      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2111      $MAKE -C $ROOTDIR"/eesupp/src/" > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2112        ) > make_eesupp.errors 2>&1
2113      RETVAL=$?      RETVAL=$?
2114      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2115          rm -f make_eesupp.errors          rm -f make_eesupp.errors
2116      else      else
2117          echo "Error: problem encountered while building source files in eesupp:"          echo "Error: problem encountered while building source files in eesupp:"
2118          cat make_eesupp.errors          cat make_eesupp.errors 1>&2
2119          exit 1          exit 1
2120      fi      fi
2121  fi  fi
2122    
2123    #same for pkg/exch2 and pkg/regrid
2124    for pdir in exch2 regrid ; do
2125        if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2126            echo "  Making source files in pkg/${pdir} from templates"
2127            ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2128            ) > make_${pdir}.errors 2>&1
2129            RETVAL=$?
2130            if test "x${RETVAL}" = x0 ; then
2131                rm -f make_${pdir}.errors
2132            else
2133                echo "Error: problem encountered while building source files in pkg/${pdir}:"
2134                cat make_${pdir}.errors 1>&2
2135                exit 1
2136            fi
2137        fi
2138    done
2139    
2140  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2141  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2142      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2143      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2144          PDEPEND=$tmp  fi
2145      else  if  test "x${PKG_DEPEND}" = x ; then
2146          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2147          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2148  else  else
2149      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2150          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2151          exit 1          exit 1
2152      fi      fi
2153        echo "  getting package dependency info from  $PKG_DEPEND"
2154    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2155        get_pdepend_list $PKG_DEPEND
2156  fi  fi
2157  echo "  getting package dependency info from  $PDEPEND"  
2158  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2159  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2160  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2161      | awk 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2162      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2163  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2164  if test ! "x${RETVAL}" = x0 ; then  fi
2165      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2166      exit 1          echo "Warning:  No package groups information was specified."
2167            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2168    else
2169        if test ! -r ${PKG_GROUPS} ; then
2170            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2171            exit 1
2172        fi
2173        echo "  getting package groups info from      $PKG_GROUPS"
2174  fi  fi
 source ./.pd_tmp  
 rm -f ./.pd_tmp  
2175    
2176  echo  -n "  checking default package list:  "  #  Search for packages to compile.
2177  if test "x${PDEFAULT}" = x ; then  echo "  checking list of packages to compile:"
2178      PDEFAULT="$ROOTDIR/pkg/pkg_default"  PKG_LIST=
2179    if test "x${PKG_LIST}" = x ; then
2180        for i in "." $MODS ; do
2181            if test -r $i"/packages.conf" ; then
2182                    PKG_LIST=$i"/packages.conf"
2183                    break
2184            fi
2185        done
2186  fi  fi
2187  if test "x${PDEFAULT}" = xNONE ; then  if test "x${PKG_LIST}" = x ; then
2188      echo "default packages file disabled"      pkg_list='default_pkg_list'
2189        if test "x${PKG_GROUPS}" = x ; then
2190            echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2191            exit 1
2192        fi
2193  else  else
2194      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2195          echo ""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2196          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          exit 1
2197      else      else
2198          echo "  using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2199          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2200          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | awk '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2201          RETVAL=$?          RETVAL=$?
2202          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2203              echo -n "Error: can't parse default package list "              printf "Error: can't parse package list "
2204              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2205              exit 1              exit 1
2206          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    packages are:  $PACKAGES"  
2207      fi      fi
2208  fi  fi
2209    for i in $pkg_list ; do
2210        PACKAGES="$PACKAGES $i"
2211    done
2212    echo     "    before group expansion packages are:$PACKAGES"
2213    if test "x${PKG_GROUPS}" != x ; then
2214        RET=1
2215        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2216        echo "    after group expansion packages are: $PACKAGES"
2217    fi
2218    
2219  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2220    echo "" > ./.tmp_pack
2221    for i in $PACKAGES ; do
2222        echo $i >> ./.tmp_pack
2223    done
2224    for i in `grep  "-" ./.tmp_pack` ; do
2225        j=`echo $i | sed 's/[-]//'`
2226        DISABLE="$DISABLE $j"
2227    done
2228  pack=  pack=
2229  for p in $PACKAGES ; do  for p in $PACKAGES ; do
2230      addit="t"      addit="t"
# Line 541  for p in $PACKAGES ; do Line 2239  for p in $PACKAGES ; do
2239  done  done
2240  PACKAGES="$pack"  PACKAGES="$pack"
2241  echo "  applying ENABLE settings"  echo "  applying ENABLE settings"
2242  rm -f ./.tmp_pack  echo "" > ./.tmp_pack
2243  PACKAGES="$PACKAGES $ENABLE"  PACKAGES="$PACKAGES $ENABLE"
2244    # Test if each explicitly referenced package exists
2245  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2246      if test ! -d "$ROOTDIR/pkg/$i" ; then      j=`echo $i | sed 's/[-+]//'`
2247          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""      if test ! -d "$ROOTDIR/pkg/$j" ; then
2248            echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2249          exit 1          exit 1
2250      fi      fi
2251      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2252  done  done
 pack=`cat ./.tmp_pack | sort | uniq`  
 rm -f ./.tmp_pack  
2253  PACKAGES=  PACKAGES=
2254  for i in $pack ; do  for i in `grep -v "-" ./.tmp_pack | sort | uniq` ; do
2255      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2256  done  done
2257  echo "    packages are:  $PACKAGES"  rm -f ./.tmp_pack
2258    echo "    packages are: $PACKAGES"
2259    
2260    #  Check for package MNC: if NetCDF is available, then build the MNC
2261    #  template files ; otherwise, delete mnc from the list of packages.
2262    echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2263    mnc_in=$?
2264    if test "x$HAVE_NETCDF" != xt ; then
2265        if test "x$mnc_in" = x0 ; then
2266            cat <<EOF
2267    *********************************************************************
2268    WARNING: the "mnc" package was enabled but tests failed to compile
2269      NetCDF applications.  Please check that:
2270    
2271      1) NetCDF is correctly installed for this compiler and
2272      2) the LIBS variable (within the "optfile") specifies the correct
2273           NetCDF library to link against.
2274    
2275      Due to this failure, the "mnc" package is now DISABLED.
2276    *********************************************************************
2277    EOF
2278            PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2279            DISABLE="$DISABLE mnc"
2280        else
2281        #  this prevent to add mnc (due to pdepend rules) if not available
2282            DISABLE="$DISABLE mnc"
2283        fi
2284    else
2285        # we have NetCDF, we try to build MNC template files
2286        ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2287        RETVAL=$?
2288        if test "x${RETVAL}" = x0 ; then
2289            rm -f make_mnc.errors
2290        else
2291            echo "Error: problem encountered while building source files in pkg/mnc:"
2292            cat make_mnc.errors 1>&2
2293            if test "x$mnc_in" = x0 ; then
2294                exit 1
2295            else
2296                DISABLE="$DISABLE mnc"
2297            fi
2298        fi
2299    fi
2300    
2301    #  Check for package PROFILES: if NetCDF is not available,
2302    #  then delete profiles from the list of available packages.
2303    if test "x$HAVE_NETCDF" != xt ; then
2304        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2305        RETVAL=$?
2306        if test "x$RETVAL" = x0 ; then
2307            cat <<EOF
2308    *********************************************************************
2309    WARNING: the "profiles" package was enabled but tests failed to
2310      compile NetCDF applications.  Please check that:
2311    
2312      1) NetCDF is correctly installed for this compiler and
2313      2) the LIBS variable (within the "optfile") specifies the correct
2314           NetCDF library to link against.
2315    
2316      Due to this failure, the "profiles" package is now DISABLED.
2317    *********************************************************************
2318    EOF
2319            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2320            DISABLE="$DISABLE profiles"
2321        else
2322        #  this prevent to add profiles (due to pdepend rules) if not available
2323            DISABLE="$DISABLE profiles"
2324        fi
2325    fi
2326    
2327    #  Check for package RADTRANS: if LAPACK is not available,
2328    #  then issue a warning that the direct radtrans solver is not available.
2329    if test "x$HAVE_LAPACK" != xt ; then
2330        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2331        RETVAL=$?
2332        if test "x$RETVAL" = x0 ; then
2333            cat <<EOF
2334    *********************************************************************
2335    WARNING: the "radtrans" package was enabled but tests failed to
2336      compile LAPACK applications.  This means that the direct radtrans
2337      solver is not available and compilation will fail if it is enabled.
2338      If you want to use the direct solver, please check that:
2339    
2340      1) LAPACK is correctly installed for this compiler and
2341      2) the LIBS variable (within the "optfile") specifies the correct
2342         LAPACK library to link against.
2343    *********************************************************************
2344    EOF
2345        fi
2346    fi
2347    
2348  echo "  applying package dependency rules"  if  test "x${PKG_DEPEND}" != x ; then
2349  ck=    echo "  applying package dependency rules"
2350  while test "x$ck" != xtt ; do    ck=
2351      while test "x$ck" != xtt ; do
2352      i=0      i=0
2353      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2354      rtot=$nname      rtot=$nname
2355      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2356    
2357          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2358          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 576  while test "x$ck" != xtt ; do Line 2364  while test "x$ck" != xtt ; do
2364                  pin="t"                  pin="t"
2365              fi              fi
2366          done          done
2367            #  or in the current $STANDARDDIRS list?
2368            for p in $STANDARDDIRS ; do
2369                if test "x$p" = "x$pname" ; then pin="t" ; fi
2370            done
2371    
2372          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2373          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 598  while test "x$ck" != xtt ; do Line 2390  while test "x$ck" != xtt ; do
2390    
2391          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2392          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2393                #echo "   " $pname ": need to add :" $dname
2394              in_dis="f"              in_dis="f"
2395              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2396                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 618  while test "x$ck" != xtt ; do Line 2411  while test "x$ck" != xtt ; do
2411          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2412          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2413              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2414              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2415              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2416              exit 1              exit 1
2417          fi          fi
2418          i=$(( $i + 1 ))          i=`echo "$i + 1" | bc -l`
2419            #i=$(( $i + 1 ))
2420      done      done
2421      ck=$ck"t"      ck=$ck"t"
2422  done    done
2423  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2424    fi
2425  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2426      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2427      if test -d $adr ; then      if test -d $adr ; then
2428          SOURCEDIRS="$SOURCEDIRS $adr"          SOURCEDIRS="$SOURCEDIRS $adr"
2429          INCLUDEDIRS="$INCLUDEDIRS $adr"          INCLUDEDIRS="$INCLUDEDIRS $adr"
2430            if test "x$i" = xautodiff ; then
2431                AUTODIFF_PKG_USED=t
2432            fi
2433      else      else
2434          echo "Error: the directory \"$adr\" for package $i doesn't exist"          echo "Error: the directory \"$adr\" for package $i doesn't exist"
2435          exit 1          exit 1
2436      fi      fi
2437  done  done
2438    
2439  #  This is compatible with the old genmake.  The "DISABLE_*" flags  # Create a list of #define and #undef to enable/disable packages
2440  #  need to be replaced by the "ALLOW_*" flags set below.  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2441  #  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2442  # echo -n "  Setting package-specific CPP flags:  "  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
 # pkrm=( mom_fluxform mom_vecinv generic_advdiff )  
 # pkrmdef=( -DDISABLE_MOM_FLUXFORM -DDISABLE_MOM_VECINV -DDISABLE_GENERIC_ADVDIFF -DDISABLE_DEBUGMODE )  
 # echo -n "  "  
 # i=0  
 # while test $i -lt "${#pkrm[@]}" ; do  
 #     echo "$PACKAGES" | grep "${pk[$i]}" > /dev/null 2>&1  
 #     RETVAL=$?  
 #     if test "x$RETVAL" = x1 ; then  
 #       DEFINES="$DEFINES ${pkdef[$i]}"  
 #       echo -n " ${pkdef[$i]}"  
 #     fi  
 #     i=$(( $i + 1 ))  
 # done  
 # echo  
   
 echo "  Setting package-specific CPP flags in CPP_OPTIONS.h:"  
 CPP_OPTIONS=  
 spaths="$SOURCEDIRS"  
 for i in $spaths ; do  
     try="$i/CPP_OPTIONS.h"  
     #  echo -n "    trying $try : "  
     if test -f $try -a -r $try ; then  
         echo "    found CPP_OPTIONS=\"$try\""  
         CPP_OPTIONS="$try"  
         if test "x$i" != "x." ; then  
             cp -f $CPP_OPTIONS .  
         fi  
         break  
     fi  
 done  
 if test "x$CPP_OPTIONS" = x ; then  
     echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"  
     exit 1  
 fi  
 if test -e CPP_OPTIONS.h ; then  
     if test ! -e CPP_OPTIONS.h.bak ; then  
         cp -f CPP_OPTIONS.h CPP_OPTIONS.h.bak  
     fi  
     cat CPP_OPTIONS.h \  
         | awk 'BEGIN{p=1;} ($1=="C===" && $2=="GENMAKE"){p=0;} {if (p==1) print $0}' \  
         > CPP_OPTIONS.h.tmp  
 fi  
 cat <<EOF >>CPP_OPTIONS.h.tmp  
 C=== GENMAKE v2 ===  
 C  The following defines have been set by GENMAKE, so please edit  
 C  them only if you know what you're doing.  In general, you should  
 C  add or remove packages by re-running genmake with different  
 C  "-enable" and/or "-disable" options.  
   
 C  Packages disabled by genmake:  
 EOF  
 #  The following UGLY HACK sets multiple "#undef"s and it needs to go  
 #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  
2443  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2444  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2445  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
2446  all_pack=  all_pack=
2447    DISABLED_PACKAGES=
2448  for n in $names ; do  for n in $names ; do
2449      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then      if test -d "$ROOTDIR/pkg/$n" -a "x$n" != xCVS ; then
2450          has_pack="f"          has_pack="f"
# Line 709  for n in $names ; do Line 2455  for n in $names ; do
2455              fi              fi
2456          done          done
2457          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2458              undef=`echo "ALLOW_$n" | awk '{print toupper($0)}'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2459              echo "#undef $undef" >> CPP_OPTIONS.h.tmp              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
   
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
             case $n in  
                 mom_fluxform)  
                     DEFINES="$DEFINES -DDISABLE_MOM_FLUXFORM"  
                     ;;  
                 mom_vecinv)  
                     DEFINES="$DEFINES -DDISABLE_MOM_VECINV"  
                     ;;  
                 generic_advdiff)  
                     DEFINES="$DEFINES -DDISABLE_GENERIC_ADVDIFF"  
                     ;;  
                 debug)  
                     DEFINES="$DEFINES -DDISABLE_DEBUGMODE"  
                     ;;  
             esac  
 #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  
   
2460          fi          fi
2461      fi      fi
2462  done  done
2463  cat <<EOF >>CPP_OPTIONS.h.tmp  ENABLED_PACKAGES=
   
 C  Packages enabled by genmake:  
 EOF  
2464  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2465      def=`echo "ALLOW_$i" | awk '{print toupper($0)}'`      def=`echo "ALLOW_$i" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2466      echo "#define $def" >> CPP_OPTIONS.h.tmp      ENABLED_PACKAGES="$ENABLED_PACKAGES -D$def"
2467    #eh3 DEFINES="$DEFINES -D$def"
2468    
2469  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2470      case $i in      case $i in
2471          aim_v23)          aim_v23)
2472              echo "#define   ALLOW_AIM" >> CPP_OPTIONS.h.tmp              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2473                echo "Warning: ALLOW_AIM is set to enable aim_v23."
2474              ;;              ;;
2475      esac      esac
2476  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2477    
2478  done  done
 mv -f CPP_OPTIONS.h.tmp CPP_OPTIONS.h  
2479    
2480  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2481  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
2482  STANDARDDIRS=${STANDARDDIRS:-"eesupp model"}  if test "x$STANDARDDIRS" != x ; then
2483  for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2484      adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
2485      if test ! -d $adr ; then          if test ! -d $adr ; then
2486          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""              echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2487          echo "  is correct and that you correctly specified the STANDARDDIRS option"              echo "  is correct and that you correctly specified the STANDARDDIRS option"
2488          exit 1              exit 1
2489      else          else
2490          SOURCEDIRS="$SOURCEDIRS $adr"              SOURCEDIRS="$SOURCEDIRS $adr"
2491            fi
2492            adr="$ROOTDIR/$d/inc"
2493            if test ! -d $adr ; then
2494                echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""
2495                echo "  is correct and that you correctly specified the STANDARDDIRS option"
2496                exit 1
2497            else
2498                INCLUDEDIRS="$INCLUDEDIRS $adr"
2499            fi
2500        done
2501    fi
2502    
2503    echo "  Searching for *OPTIONS.h files in order to warn about the presence"
2504    echo "    of \"#define \"-type statements that are no longer allowed:"
2505    CPP_OPTIONS=
2506    CPP_EEOPTIONS=
2507    spaths=". $INCLUDEDIRS"
2508    names=`ls -1 "$ROOTDIR/pkg"`
2509    for i in $spaths ; do
2510        try="$i/CPP_OPTIONS.h"
2511        if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2512            echo "    found CPP_OPTIONS=\"$try\""
2513            CPP_OPTIONS="$try"
2514            # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2515            for n in $names ; do
2516                test_for_package_in_cpp_options $CPP_OPTIONS $n
2517            done
2518      fi      fi
2519      adr="$ROOTDIR/$d/inc"      try="$i/CPP_EEOPTIONS.h"
2520      if test ! -d $adr ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2521          echo "Error:  directory $adr not found -- please check that ROOTDIR=\"$ROOTDIR\""          echo "    found CPP_EEOPTIONS=\"$try\""
2522          echo "  is correct and that you correctly specified the STANDARDDIRS option"          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2523          exit 1  #**** not yet enabled ****
2524      else  #        test_for_mpi_in_cpp_eeoptions $try
2525          INCLUDEDIRS="$INCLUDEDIRS $adr"  #**** not yet enabled ****
2526            CPP_EEOPTIONS="$try"
2527      fi      fi
2528  done  done
2529    if test "x$CPP_OPTIONS" = x ; then
2530        echo "Error: can't find \"CPP_OPTIONS.h\" in the path list: $spaths"
2531        exit 1
2532    fi
2533    
2534    #  Here, we build the list of files to be "run through" the adjoint
2535    #  compiler.
2536    if test -f ./adSrcFiles.tmp ; then
2537        rm -f ./adSrcFiles.tmp
2538    fi
2539    echo "  Creating the list of files for the adjoint compiler."
2540    touch adSrcFiles.tmp
2541    for i in $SOURCEDIRS ; do
2542        list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2543        for j in $list_files ; do
2544            cat $i/$j >> adSrcFiles.tmp
2545        done
2546    done
2547    if test ! "x"$FS = "x.f" ; then
2548        cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2549        mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2550    fi
2551    
2552  echo  echo
2553  echo "===  Creating the Makefile  ==="  echo "===  Creating the Makefile  ==="
2554  echo "  setting INCLUDES"  echo "  setting INCLUDES"
2555  for i in $INCLUDEDIRS ; do  for i in $INCLUDEDIRS ; do
2556      if test -d $i ; then      if test ! -d $i ; then
         INCLUDES="$INCLUDES -I$i"  
     else  
2557          echo "Warning: can't find INCLUDEDIRS=\"$i\""          echo "Warning: can't find INCLUDEDIRS=\"$i\""
2558      fi      fi
2559  done  done
2560    
2561    if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2562      if test ! "x$MPIINCLUDEDIR" = x ; then
2563        if test -d $MPIINCLUDEDIR ; then
2564            echo "  Creating the pseudo-MPI include directory"
2565            INCLUDES="-I./mpi_headers $INCLUDES"
2566            rm -rf ./mpi_headers
2567            mkdir -p ./mpi_headers
2568            #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2569            #   checking for additional included headers (in case of chain of included
2570            #   header); also set LOCAL_MPI_HEADERS (if not already set)
2571            mpi_headers_do_local_copy
2572        else
2573            echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a dir"
2574            echo "WARNING: ==> cannot create pseudo-MPI include directory"
2575    #       exit -1
2576        fi
2577      fi
2578    fi
2579    
2580  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
2581  rm -rf .links.tmp  rm -rf .links.tmp
2582  mkdir .links.tmp  mkdir .links.tmp
2583    touch .links.tmp/foo
2584    if test ! -r ".links.tmp/foo" ; then
2585        echo
2586        echo "ERROR : something is wrong with your directory permissions or"
2587        echo "   your user file-creation mask (\"umask\") since creating a"
2588        echo "   sub-dir, touch-ing a file within it, and then reading it is"
2589        echo "   not working.  Please try setting your umask to something"
2590        echo "   sane such as:"
2591        echo
2592        echo "      umask 0002"
2593        echo
2594        echo "   and please verify that you have the proper permissions for"
2595        echo "   creating sub-directories and then reading files created"
2596        echo "   within them."
2597        echo
2598        exit 1
2599    fi
2600    rm -f .links.tmp/foo
2601    
2602    if test "x$OPENAD" != x ; then
2603        OAD_DONT_COMPILE="/dev/null"
2604        OAD_DONT_TRANSFORM="/dev/null"
2605        OAD_KEEP_ORIGINAL="/dev/null"
2606        OAD_CB2M_FILES="/dev/null"
2607        OADTOOLS="$TOOLSDIR/OAD_support"
2608        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2609    cat >> "oadtempflile" <<EOF
2610    $OADTOOLS
2611    EOF
2612        echo "  looking for dontCompile file:  "
2613        for i in "." $MODS ; do
2614            if test -r $i"/dontCompile" ; then
2615                OAD_DONT_COMPILE=$i"/dontCompile"
2616                echo "     found $OAD_DONT_COMPILE"
2617                break
2618            fi
2619        done
2620        echo "  looking for dontTransform file:  "
2621        for i in "." $MODS ; do
2622            if test -r $i"/dontTransform" ; then
2623                OAD_DONT_TRANSFORM=$i"/dontTransform"
2624                echo "     found $OAD_DONT_TRANSFORM"
2625                break
2626            fi
2627        done
2628        echo "  looking for keepOriginal file:  "
2629        for i in "." $MODS ; do
2630            if test -r $i"/keepOriginal" ; then
2631                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2632                echo "     found $OAD_KEEP_ORIGINAL"
2633                break
2634            fi
2635        done
2636        echo "  looking for cb2mFiles:  "
2637        for i in "." $MODS ; do
2638            if test -r $i"/cb2mFiles" ; then
2639                OAD_CB2M_FILES=$i"/cb2mFiles"
2640                echo "     found $OAD_CB2M_FILES"
2641                break
2642            fi
2643        done
2644        echo "   OpenAD exceptions:  "
2645    fi
2646    
2647  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2648  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2649  echo -n 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2650  echo -n 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2651  echo -n 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2652  echo -n 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2653  alldirs=". $SOURCEDIRS $INCLUDEDIRS"  printf 'H_SRC_FILES = '   > hsrclist.tmp
2654    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2655    alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2656  for d in $alldirs ; do  for d in $alldirs ; do
2657      deplist=      deplist=
2658      sfiles=`( cd $d; echo *.[h,c,F] )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2659      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2660        if test "x$OPENAD" != x ; then
2661            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2662        fi
2663      for sf in $sfiles ; do      for sf in $sfiles ; do
2664          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2665              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2666                  extn=`echo $sf | awk -F '.' '{print $NF}'`                  ignore_f=f
2667                  touch .links.tmp/$sf                  case $d/$sf in
2668                  deplist="$deplist $sf"                    ./$PACKAGES_DOT_H)
2669                  case $extn in                          ignore_f=t
2670                      F)                          ;;
2671                          echo    " \\"  >> srclist.inc                    ./AD_CONFIG.h)
2672                          echo -n " $sf" >> srclist.inc                          ignore_f=t
2673                            ;;
2674                      ./FC_NAMEMANGLE.h)
2675                            ignore_f=t
2676                            ;;
2677                      ./BUILD_INFO.h)
2678                            ignore_f=t
2679                            ;;
2680                      ./EMBEDDED_FILES.h)
2681                            ignore_f=t
2682                            ;;
2683                      *)
2684                            #  For the local directory *ONLY*,
2685                            #  ignore all soft-links
2686                            if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
2687                                ignore_f=t
2688                            else
2689                                touch .links.tmp/$sf
2690                                deplist="$deplist $sf"
2691                            fi
2692                            ;;
2693                    esac
2694                    if test "x$ignore_f" = xf ; then
2695                        extn=`echo $sf | $AWK -F. '{print $NF}'`
2696                        case $extn in
2697                          F)
2698                            echo    " \\"  >> F77srclist.tmp
2699                            printf " $sf" >> F77srclist.tmp
2700                            if test "x$OPENAD" != x ; then
2701                                basename=${sf%%.F}
2702                                isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2703                                if test -z "$isAD" ; then
2704                                    toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2705                                    if test -z "$toBeIgnored" ; then
2706                                        echo    " \\"  >> nonADF77srclist.tmp
2707                                        printf " $sf" >> nonADF77srclist.tmp
2708                                    else
2709                                        echo "    not to be compiled   :  $sf"
2710                                    fi
2711                                else # file is initially listed as an AD file we want to exclude it
2712                                     # or we want to retain the untransformed version
2713                                    notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2714                                    untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2715                                    if test -n "$notToBeTransformed"; then
2716                                        echo "    not to be transformed:  $sf"
2717                                    fi
2718                                    if test -n "$untransformedVersionToBeKept" ; then
2719                                        echo "    original to be kept  :  $sf"
2720                                    fi
2721                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2722                                        echo    " \\"  >> nonADF77srclist.tmp
2723                                        printf " $sf" >> nonADF77srclist.tmp
2724                                    fi
2725                                fi
2726                            fi
2727                          ;;                          ;;
2728                      F90)                      F90)
2729                          echo    " \\"  >> f90srclist.inc                          echo    " \\"  >> F90srclist.tmp
2730                          echo -n " $sf" >> f90srclist.inc                          printf " $sf" >> F90srclist.tmp
2731                          ;;                          ;;
2732                      c)                      c)
2733                          echo    " \\"  >> csrclist.inc                          echo    " \\"  >> csrclist.tmp
2734                          echo -n " $sf" >> csrclist.inc                          printf " $sf" >> csrclist.tmp
2735                          ;;                          ;;
2736                      h)                      h)
2737                          echo    " \\"  >> hlist.inc                          echo    " \\"  >> hsrclist.tmp
2738                          echo -n " $sf" >> hlist.inc                          printf " $sf" >> hsrclist.tmp
2739                          ;;                          ;;
2740                  esac                      flow)
2741                            echo    " \\"  >> ad_flow_files.tmp
2742                            printf " $sf" >> ad_flow_files.tmp
2743                            ;;
2744                       esac
2745                    fi
2746              fi              fi
2747          fi          fi
2748      done      done
2749      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2750          if test "$d" != "." ; then
2751          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2752          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2753          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2754          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2755    # This may happen when make thinks that a header file has to be "remade"
2756    # because a module it depends on has changed.  In this case we do nothing.
2757            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2758          fi
2759      fi      fi
2760  done  done
2761  rm -rf .links.tmp  rm -rf .links.tmp
2762  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2763  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2764  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2765  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2766    echo "" >> hsrclist.tmp
2767    echo "" >> ad_flow_files.tmp
2768    
2769    CMDLINE=$0
2770    for xx in "$@" ; do nw=`echo $xx | wc -w`
2771        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2772                            else CMDLINE="$CMDLINE '$xx'" ; fi
2773    done
2774    
2775  if test -e $MAKEFILE ; then  if test -f $MAKEFILE ; then
2776      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2777  fi  fi
2778  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2779  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 848  echo "#    $MACHINE" >> $MAKEFILE Line 2781  echo "#    $MACHINE" >> $MAKEFILE
2781  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2782  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2783  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2784  echo "#    $0 $@" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2785  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2786  echo "#    $USER@${THISHOSTNAME}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2787    
2788    EXE_AD=$EXECUTABLE"_ad"
2789    EXE_FTL=$EXECUTABLE"_ftl"
2790    EXE_SVD=$EXECUTABLE"_svd"
2791    
2792  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2793  #  #
2794    # OPTFILE="$OPTFILE"
2795    #
2796  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2797  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2798  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 863  cat >>$MAKEFILE <<EOF Line 2803  cat >>$MAKEFILE <<EOF
2803  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2804  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2805  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2806  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2807  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2808  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 872  cat >>$MAKEFILE <<EOF Line 2810  cat >>$MAKEFILE <<EOF
2810  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2811    
2812  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2813  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2814  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2815  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2816  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2817  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2818  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2819    OADTOOLS    = ${OADTOOLS}
2820    
2821    #eh3  new defines for the adjoint work
2822    AUTODIFF    = ${ROOTDIR}/pkg/autodiff
2823    EXE_AD      = ${EXE_AD}
2824    EXE_FTL     = ${EXE_FTL}
2825    EXE_SVD     = ${EXE_SVD}
2826    
2827    ENABLED_PACKAGES = ${ENABLED_PACKAGES}
2828    DISABLED_PACKAGES = ${DISABLED_PACKAGES}
2829    
2830    # These files are created by Makefile
2831    SPECIAL_FILES = ${PACKAGES_DOT_H} AD_CONFIG.h FC_NAMEMANGLE.h BUILD_INFO.h
2832  EOF  EOF
2833    
2834  #  Note: figure out some way to add Hyades JAM libraries here  if test "x$EMBED_SRC" = xt ; then
2835        echo "EMBEDDED_FILES = EMBEDDED_FILES.h" >>$MAKEFILE
2836    else
2837        echo "EMBEDDED_FILES = " >>$MAKEFILE
2838    fi
2839    
2840    # extract default cpp search path so we can pass it to makedepend
2841    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2842    
2843  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2844  # Unix ln (link)  # Unix ln (link)
2845  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2846  # Dependency generator  # Dependency generator
2847  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2848  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 896  KPP = ${KPP} Line 2851  KPP = ${KPP}
2851  FC = ${FC}  FC = ${FC}
2852  # Fortran compiler  # Fortran compiler
2853  F90C = ${F90C}  F90C = ${F90C}
2854    # C compiler
2855    CC = ${CC}
2856  # Link editor  # Link editor
2857  LINK = ${LINK}  LINK = ${LINK} ${LDADD}
2858    
2859  # Defines for CPP  # Defines for CPP
2860  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2861  # Includes for CPP  # Includes for CPP
2862  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2863    # default CPP includes for makedepend
2864    CPPINCLUDES = ${CPPINCLUDES}
2865  # Flags for KPP  # Flags for KPP
2866  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2867  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2868  # Optim./debug for FC  # Optim./debug for FC
2869  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2870  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2871  # Optim./debug for FC  # Optim./debug for FC
2872  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2873  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2874    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2875  # Flags for CC  # Flags for CC
2876  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2877  # Files that should not be optimized  # Files that should not be optimized
2878  NOOPTFILES = ${NOOPTFILES}  NOOPTFILES = ${NOOPTFILES}
2879  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2880  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2881  LIBS = ${LIBS} \$(XLIBS)  LIBS = ${LIBS}
2882  # Name of the Mekfile  # Name of the makefile
2883  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2884    # Name of the make program
2885    MAKE = ${MAKE}
2886    
2887  EOF  EOF
2888    
2889  cat srclist.inc    >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2890  cat csrclist.inc   >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2891  cat f90srclist.inc >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2892  cat hlist.inc      >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2893  echo 'F77FILES =  $(SRCFILES:.F=.f)'                                           >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2894  echo 'F90FILES =  $(F90SRCFILES:.F90=.f90)'                                    >> $MAKEFILE  cat ad_flow_files.tmp   >> $MAKEFILE
2895  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  
2896    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2897  rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
2898    echo >> $MAKEFILE
2899    
2900    # add definitions for preprocessed sources
2901    # and note that not all systems allow case sensitive extensions
2902    # hence the $FS and $FS90 here.
2903    # for fixed format f90 files we use ff90 or FF90 resp
2904    # but these are not expected to be the original source files
2905    
2906    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2907    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2908    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2909    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2910    echo >> $MAKEFILE
2911    echo '.SUFFIXES:' >> $MAKEFILE
2912    echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2913    
2914  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2915    
2916  .SUFFIXES:  all: fwd_exe_target
2917  .SUFFIXES: .o .f .p .F .c .F90 .f90  fwd_exe_target:
2918            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2919            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2920            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2921            @-rm -f ad_config.template
2922            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2923    
2924  all: \$(EXECUTABLE)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2925  \$(EXECUTABLE): \$(OBJFILES)          @echo Creating \$@ ...
2926          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2927    
2928  depend:  depend:
2929          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2930          \$(MAKEDEPEND) -o .f \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2931          ../../../tools/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2932            -rm -f makedepend.out
2933    
2934  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES)  lib: libmitgcmuv.a
2935    
2936  small_f: \$(F77FILES) \$(F90FILES)  libmitgcmuv.a: \$(OBJFILES)
2937            ar rcv libmitgcmuv.a \$(OBJFILES)
2938            ar d   libmitgcmuv.a main.o
2939    
2940    obj: \$(OBJFILES)
2941    
2942    links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2943    
2944    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2945    
2946  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2947          @printf 'running ... '          @printf 'running ... '
2948          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2949    
2950    # remove most of the files that "make" generates
2951  clean:  clean:
2952          -rm -rf *.o *.f *.p *.f90 *.mod ${RMFILES} work.{pc,pcl}          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2953            -rm -rf *.o
2954            -rm -rf *.$FS *.flowdir
2955            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2956    
2957    # remove most of the files that "make" and "make depend" generate
2958  Clean:  Clean:
2959          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2960          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2961          -rm -f Makefile.bak          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2962            -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2963    
2964    # remove also the executable, files that "genmake2" generates (except Makefile)
2965    #         and output from a run (plus log files from testreport)
2966  CLEAN:  CLEAN:
2967          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2968            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2969            -rm -f $LOGFILE genmake_state genmake_*optfile
2970            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2971            -rm -rf mpi_headers mnc_test_*
2972          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2973          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2974          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2975          -rm -f \$(EXECUTABLE)          -rm -f *.txt STD* *diagnostics.log datetime
2976            -rm -f *_MIT_CE_000.opt0000 costfunction*0000 costfinal
2977            -rm -f divided.ctrl snapshot* oad_cp.000.[0-9][0-9][0-9][0-9][0-9]
2978    
2979  makefile:  makefile:
2980          ${0} $@          $THIS_SCRIPT $G2ARGS
2981  cleanlinks:  cleanlinks:
2982          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2983    
2984  # The normal chain of rules is (  .F - .f - .o  )  # Special targets (SPECIAL_FILES) which are created by make
2985  .F.f:  ${PACKAGES_DOT_H}:
2986          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          @echo Creating \$@ ...
2987  .f.o:          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2988    AD_CONFIG.h:
2989            @echo Creating \$@ ...
2990            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2991    FC_NAMEMANGLE.h:
2992            @echo Creating \$@ ...
2993            echo "$FC_NAMEMANGLE" > \$@
2994    
2995    BUILD_INFO.h:
2996            @echo Creating \$@ ...
2997    EOF
2998    
2999    test ! "x$THISVER" = x  && echo "       -echo \"#define THISVER '$THISVER'\" > \$@"   >> $MAKEFILE
3000    test ! "x$THISUSER" = x && echo "       -echo \"#define THISUSER '$THISUSER'\" >> \$@" >> $MAKEFILE
3001    test ! "x$THISDATE" = x && echo "       -echo \"#define THISDATE '$THISDATE'\" >> \$@" >> $MAKEFILE
3002    test ! "x$THISHOST" = x && echo "       -echo \"#define THISHOST '$THISHOST'\" >> \$@" >> $MAKEFILE
3003    
3004    if test "x$EMBED_SRC" = xt ; then
3005        cat >>$MAKEFILE <<EOF
3006    
3007    decode_files.o : EMBEDDED_FILES.h
3008    
3009    ##  \$(F77_PP_SRC_FILES)
3010    all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3011            @echo Creating \$@ ...
3012            -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3013            -rm -f all_fF.tar.gz
3014            -gzip all_fF.tar
3015    
3016    EMBEDDED_FILES.h : all_fF.tar.gz
3017            @echo Creating \$@ ...
3018            -\${ROOTDIR}/tools/embed_encode/encode_files EMBEDDED_FILES.h all_fF.tar.gz
3019    
3020    EOF
3021    fi
3022    
3023    cat >>$MAKEFILE <<EOF
3024    
3025    # The normal chain of rules is (  .F - .$FS - .o  )
3026    
3027    ## This nullifies any default implicit rules concerning these two file types:
3028    ## %.o : %.F
3029    
3030    # C preprocessing and replacing the _d in constants:
3031    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3032    
3033    .F.$FS:
3034            \$(CPPCMD)  > \$@
3035    .$FS.o:
3036            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3037    .F.o:
3038          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3039  .F90.f90:  .F90.$FS90:
3040          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3041  .f90.o:  .FF90.f$FS90:
3042            \$(CPPCMD)  > \$@
3043    .$FS90.o:
3044          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3045    .f$FS90.o:
3046            cp \$< \$(basename  \$<).f90
3047            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3048  .c.o:  .c.o:
3049          \$(CC) \$(CFLAGS) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3050    .flow.flowdir:
3051            \$(CPPCMD) > \$@
3052    
3053  # Special exceptions that use the ( .F - .p - .f - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3054  .F.p:  .F.p:
3055          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3056  .p.f:  .p.$FS:
3057          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3058    
3059  EOF  EOF
3060    
3061    #=========================================
3062    #===  Automatic Differentiation Rules  ===
3063    #===  for TAMC/TAF  ======================
3064    
3065    if test "x$OPENAD" = x ; then
3066    
3067    cat >>$MAKEFILE <<EOF
3068    
3069    TAMC           = ${TAMC}
3070    TAF            = ${TAF}
3071    
3072    TAF_EXTRA      = ${TAF_EXTRA}
3073    TAMC_EXTRA     = ${TAMC_EXTRA}
3074    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3075    
3076    EOF
3077    
3078    ad_vars="AD_TAMC_FLAGS AD_TAF_FLAGS"
3079    ad_vars="$ad_vars FTL_TAMC_FLAGS FTL_TAF_FLAGS"
3080    ad_vars="$ad_vars SVD_TAMC_FLAGS SVD_TAF_FLAGS"
3081    for i in $ad_vars ; do
3082        name=$i
3083        t1="t2=\$"`echo "$i"`
3084        eval $t1
3085        printf "%-20s = " $name >> $MAKEFILE
3086        echo "$t2" | sed -e 's| \+| |g' >> $MAKEFILE
3087    done
3088    
3089    echo "  Add the source list for AD code generation"
3090    echo >> $MAKEFILE
3091    printf "AD_FILES = " >> $MAKEFILE
3092    AD_FILES=`cat adSrcFiles.tmp`
3093    for i in $AD_FILES ; do
3094        echo    " \\" >> $MAKEFILE
3095        printf " $i" >> $MAKEFILE
3096    done
3097    echo >> $MAKEFILE
3098    rm -f adSrcFiles.tmp
3099    
3100    cat >>$MAKEFILE <<EOF
3101    
3102    # ... AD ...
3103    adall: ad_exe_target
3104    adtaf: ad_taf_output.$FS
3105    adtamc: ad_tamc_output.$FS
3106    
3107    ad_exe_target:
3108            @echo Update AD_CONFIG.h and make \$(EXE_AD)
3109            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3110            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3111            @-rm -f ad_config.template
3112            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3113    
3114    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3115            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3116            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3117            @-rm -f ad_config.template
3118            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3119            @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3120            cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3121    
3122    ad_taf_output.$FS: ad_input_code.$FS
3123            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3124            ls -l ad_input_code_ad.$FS
3125            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3126    
3127    adtafonly:
3128            \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3129            ls -l ad_input_code_ad.$FS
3130            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3131    
3132    \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3133            \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3134    
3135    ad_tamc_output.$FS: ad_input_code.$FS
3136            \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3137            cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3138    
3139    ad_tamc: ad_tamc_output.o \$(OBJFILES)
3140            \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3141    
3142    adonlyfwd:
3143            patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3144    
3145    adtrick:
3146            patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3147    
3148    adobj: ad_taf_output.o \$(OBJFILES)
3149    
3150    # ... FTL ...
3151    ftlall: ftl_exe_target
3152    ftltaf: ftl_taf_output.$FS
3153    ftltamc: ftl_tamc_output.$FS
3154    
3155    ftl_exe_target:
3156            @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3157            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3158            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3159            @-rm -f ad_config.template
3160            \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3161    
3162    ftl_input_code.$FS: \$(AD_FILES)
3163            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3164            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3165            @-rm -f ad_config.template
3166            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3167            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3168            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3169    
3170    ftl_taf_output.$FS: ftl_input_code.$FS
3171            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3172            ls -l ftl_input_code_ftl.$FS
3173            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3174    
3175    ftltafonly:
3176            \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3177            ls -l ftl_input_code_ftl.$FS
3178            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3179    
3180    \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3181            \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3182    
3183    ftl_tamc_output.$FS: ftl_input_code.$FS
3184            \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3185            cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3186    
3187    ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3188            \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
3189    
3190    # ... SVD ...
3191    svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
3192            @echo "--->>> Only ran TAF to generate SVD code!    <<<---"
3193            @echo "--->>> Do make svdall afterwards to compile. <<<---"
3194    svdall: svd_touch svd_taf
3195    
3196    svd_taf: \$(OBJFILES)
3197            \$(LINK) -o mitgcmuv_svd \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o ftl_taf_output.o \$(LIBS)
3198    
3199            @echo "--->>> Only COMPILE svd code! <<<---"
3200            @echo "--->>> Assumes you previously <<<---"
3201            @echo "--->>> did make svdtaf        <<<---"
3202    
3203    svd_touch:
3204            @echo "--->>> Only COMPILE svd code! <<<---"
3205            @echo "--->>> Assumes you previously <<<---"
3206            @echo "--->>> did make svdtaf        <<<---"
3207            touch ad_taf_output.$FS ftl_taf_output.$FS
3208            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3209            \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3210            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3211            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3212            @-rm -f ad_config.template
3213    
3214    EOF
3215    
3216    fi
3217    
3218    #===  for OpenAD  ========================
3219    
3220    if test "x$OPENAD" != x ; then
3221    
3222    # ============ begin OpenAD specific section ==============
3223    
3224    cat >>$MAKEFILE <<EOF
3225    
3226    # all the source files linked from the various locations:
3227    ALL_LINKED_FILES= \
3228    \$(F77_SRC_FILES) \
3229    \$(C_SRC_FILES) \
3230    \$(H_SRC_FILES) \
3231    \$(F90_SRC_FILES) \
3232    \$(SPECIAL_FILES)
3233    
3234    ifndef OPENADROOT
3235      \$(error "Error:  environment variable OPENADROOT not defined!")
3236    endif
3237    
3238    ifndef XAIFSCHEMAROOT
3239      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3240    endif
3241    
3242    ifndef XAIFBOOSTERROOT
3243      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3244    endif
3245    
3246    EOF
3247    
3248    echo "  Add the source list for common block to module conversion "
3249    echo >> $MAKEFILE
3250    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3251    for i in `cat ${OAD_CB2M_FILES}` ; do
3252      echo    " \\" >> $MAKEFILE
3253      printf " $i" >> $MAKEFILE
3254    done
3255    echo >> $MAKEFILE
3256    
3257    echo "  Add the source list for AD code generation"
3258    echo >> $MAKEFILE
3259    printf "AD_FILES = " >> $MAKEFILE
3260    for i in `cat ${OAD_CB2M_FILES}` ; do
3261      echo    " \\" >> $MAKEFILE
3262      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3263    done
3264    AD_FILES=`cat adSrcFiles.tmp`
3265    for i in $AD_FILES ; do
3266      basename=${i%%.f}
3267      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3268      if test -z "$toBeIgnored" ; then
3269        echo    " \\" >> $MAKEFILE
3270        printf " $i" >> $MAKEFILE
3271      fi
3272    done
3273    echo >> $MAKEFILE
3274    rm -f adSrcFiles.tmp
3275    
3276    cat >>$MAKEFILE <<EOF
3277    
3278    adAll: \$(EXE_AD)
3279    .PHONY: adAll
3280    
3281    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3282    
3283    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3284    
3285    .PHONY: adDepend
3286    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3287            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3288            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3289            -rm -f makedepend.out
3290    
3291    OPENAD_SUPPORT_F90_SRC_FILES = \
3292    w2f__types.F90 \
3293    OAD_active.F90 \
3294    OAD_cp.F90 \
3295    OAD_rev.F90 \
3296    OAD_tape.F90 \
3297    revolve.F90
3298    
3299    OPENAD_SUPPORT_C_SRC_FILES = \
3300    iaddr.c \
3301    timeRatio.c
3302    
3303    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3304            cat \$^ > \$@
3305    
3306    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3307            cat \$^ > \$@
3308    
3309    f95_test.out: f95_test_mods.f90 f95_test.f90
3310            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3311            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3312    
3313    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3314    
3315    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3316    
3317    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3318    
3319    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3320            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3321    
3322    # create sources files modules from header files containing common blocks
3323    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3324            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3325    
3326    # create new header files with USE statements for the new modules made above
3327    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3328            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3329    
3330    # change the include directives of everybody to refer to  the new header files with the USE statements
3331    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3332            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3333    
3334    # makefile debug rule
3335    small_f: \$(CB2M_F90_PP_SRC_FILES)
3336    .PHONY: small_f
3337    
3338    ad_output.txt: \$(EXE_AD)
3339            @printf 'linking data files ... '
3340            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3341            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3342            @printf 'running ... '
3343            @./\$(EXE_AD) > \$@
3344    
3345    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3346            cat \$^ > \$@
3347    
3348    # canonicalizer
3349    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3350            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3351    
3352    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3353    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3354            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3355    
3356    # F -> WHIRL
3357    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3358            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3359    
3360    # WHIRL -> XAIF
3361    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3362            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3363    
3364    # XAIF -> XAIF'
3365    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3366            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3367    
3368    # XAIF' -> WHIRL'
3369    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3370            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3371    
3372    # WHIRL' -> F'
3373    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3374            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3375    
3376    # insert template directives
3377    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3378            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3379    
3380    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3381    # postprocess F'
3382    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3383            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3384            # the target is a placeholder to trigger a single execution of the rule
3385            touch \$@
3386    # put this so make knows about the postprocessing output
3387    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3388    
3389    # link the XAIF schema files
3390    %.xsd:
3391            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3392    
3393    # link the support files:
3394    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3395            \$(LN) \${OADTOOLS}/\$@ .
3396    
3397    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3398    
3399    # ============ end OpenAD specific section ==============
3400    
3401    EOF
3402    
3403    fi
3404    
3405    #=========================================
3406    
3407    if test "x$EXEHOOK" != x ; then
3408        printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3409    fi
3410    
3411  echo "  Making list of \"exceptions\" that need \".p\" files"  echo "  Making list of \"exceptions\" that need \".p\" files"
3412  for i in $KPPFILES ; do  for i in $KPPFILES ; do
3413      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`      base=`echo $i | sed -e 's/\/.*\///g' | sed -e 's/\..*$//g'`
# Line 1000  for i in $KPPFILES ; do Line 3415  for i in $KPPFILES ; do
3415      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3416          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3417      fi      fi
3418      echo "$base.f: $base.p" >> $MAKEFILE      echo "$base.$FS: $base.p" >> $MAKEFILE
3419  done  done
3420    
3421  echo "  Making list of NOOPTFILES"  echo "  Making list of NOOPTFILES"
# Line 1010  for i in $NOOPTFILES ; do Line 3425  for i in $NOOPTFILES ; do
3425      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
3426          echo "Error: unable to add file \"$i\" to the exceptions list"          echo "Error: unable to add file \"$i\" to the exceptions list"
3427      fi      fi
3428      echo "$base.o: $base.f" >> $MAKEFILE      echo "$base.o: $base.$FS" >> $MAKEFILE
3429      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE      printf "\t\$(FC) \$(FFLAGS) \$(NOOPTFLAGS) -c \$<\n" >> $MAKEFILE
3430  done  done
3431    
# Line 1023  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3438  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3438    
3439  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3440    
3441    # Create special header files
3442    $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3443    if test ! -f $PACKAGES_DOT_H ; then
3444        mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3445    else
3446        cmp $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H > /dev/null 2>&1
3447        RETVAL=$?
3448        if test "x$RETVAL" = x0 ; then
3449            rm -f $PACKAGES_DOT_H".tmp"
3450        else
3451            mv -f $PACKAGES_DOT_H $PACKAGES_DOT_H".bak"
3452            mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3453        fi
3454    fi
3455    if test ! -f AD_CONFIG.h ; then
3456        $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3457    fi
3458    
3459  #  Write the "state" for future records  #  Write the "state" for future records
3460  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3461      echo -n "" > gm_state      printf "" > genmake_state
3462      for i in $gm_state ; do      for i in $gm_state ; do
3463          t1="t2=\$$i"          t1="t2=\$$i"
3464          eval $t1          eval $t1
3465          echo "$i='$t2'" >> gm_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3466      done      done
3467  fi  fi

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