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revision 1.235 by utke, Sat Aug 18 05:48:34 2012 UTC revision 1.251 by jmc, Sun Jul 21 23:21:36 2013 UTC
# Line 17  Usage: "$0" [OPTIONS] Line 17  Usage: "$0" [OPTIONS]
17    where [OPTIONS] can be:    where [OPTIONS] can be:
18    
19      -help | --help | -h | --h      -help | --help | -h | --h
20            Print this help message and exit.            Print this help message and exit.
21    
22      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME      -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME        -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24            Use "NAME" as the adoptfile.  By default, the file at            Use "NAME" as the adoptfile.  By default, the file at
25            "tools/adjoint_options/adjoint_default" will be used.            "tools/adjoint_options/adjoint_default" will be used.
26    
27      -nooptfile | --nooptfile      -nooptfile | --nooptfile
28        -optfile NAME | --optfile NAME | -of NAME | --of NAME        -optfile NAME | --optfile NAME | -of NAME | --of NAME
29        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME        -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30            Use "NAME" as the optfile.  By default, an attempt will be            Use "NAME" as the optfile.  By default, an attempt will be
31            made to find an appropriate "standard" optfile in the            made to find an appropriate "standard" optfile in the
32            tools/build_options/ directory.            tools/build_options/ directory.
33    
34      -pdepend NAME | --pdepend NAME      -pdepend NAME | --pdepend NAME
35        -pdepend=NAME | --pdepend=NAME        -pdepend=NAME | --pdepend=NAME
36            Get package dependency information from "NAME".            Get package dependency information from "NAME".
37    
38      -pgroups NAME | --pgroups NAME      -pgroups NAME | --pgroups NAME
39        -pgroups=NAME | --pgroups=NAME        -pgroups=NAME | --pgroups=NAME
40            Get the package groups information from "NAME".            Get the package groups information from "NAME".
41    
42      -bash NAME      -bash NAME
43            Explicitly specify the Bourne or BASH shell to use            Explicitly specify the Bourne or BASH shell to use
44    
45      -make NAME | -m NAME      -make NAME | -m NAME
46        --make=NAME | -m=NAME        --make=NAME | -m=NAME
47            Use "NAME" for the MAKE program. The default is "make" but            Use "NAME" for the MAKE program. The default is "make" but
48            many platforms, "gmake" is the preferred choice.            many platforms, "gmake" is the preferred choice.
49    
50      -makefile NAME | -mf NAME      -makefile NAME | -mf NAME
51        --makefile=NAME | -mf=NAME        --makefile=NAME | -mf=NAME
52            Call the makefile "NAME".  The default is "Makefile".            Call the makefile "NAME".  The default is "Makefile".
53    
54      -makedepend NAME | -md NAME      -makedepend NAME | -md NAME
55        --makedepend=NAME | -md=NAME        --makedepend=NAME | -md=NAME
56            Use "NAME" for the MAKEDEPEND program.            Use "NAME" for the MAKEDEPEND program.
57    
58      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME      -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME        -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60            Specify the location of the MITgcm ROOTDIR as "NAME".            Specify the location of the MITgcm ROOTDIR as "NAME".
61            By default, genamke will try to find the location by            By default, genamke will try to find the location by
62            looking in parent directories (up to the 5th parent).            looking in parent directories (up to the 5th parent).
63    
64      -mods NAME | --mods NAME | -mo NAME | --mo NAME      -mods NAME | --mods NAME | -mo NAME | --mo NAME
65        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME        -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66            Here, "NAME" specifies a list of directories that are            Here, "NAME" specifies a list of directories that are
67            used for additional source code.  Files found in the            used for additional source code.  Files found in the
68            "mods list" are given preference over files of the same            "mods list" are given preference over files of the same
69            name found elsewhere.            name found elsewhere.
70    
71      -disable NAME | --disable NAME      -disable NAME | --disable NAME
72        -disable=NAME | --disable=NAME        -disable=NAME | --disable=NAME
73            Here "NAME" specifies a list of packages that we don't            Here "NAME" specifies a list of packages that we don't
74            want to use.  If this violates package dependencies,            want to use.  If this violates package dependencies,
75            genamke will exit with an error message.            genamke will exit with an error message.
76    
77      -enable NAME | --enable NAME      -enable NAME | --enable NAME
78        -enable=NAME | --enable=NAME        -enable=NAME | --enable=NAME
79            Here "NAME" specifies a list of packages that we wish            Here "NAME" specifies a list of packages that we wish
80            to specifically enable.  If this violates package            to specifically enable.  If this violates package
81            dependencies, genamke will exit with an error message.            dependencies, genamke will exit with an error message.
82    
83      -standarddirs NAME | --standarddirs NAME      -standarddirs NAME | --standarddirs NAME
84        -standarddirs=NAME | --standarddirs=NAME        -standarddirs=NAME | --standarddirs=NAME
85            Here, "NAME" specifies a list of directories to be            Here, "NAME" specifies a list of directories to be
86            used as the "standard" code.            used as the "standard" code.
87    
88      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME      -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89        -fc=NAME | --fc=NAME        -fc=NAME | --fc=NAME
90            Use "NAME" as the fortran compiler.  By default, genmake            Use "NAME" as the fortran compiler.  By default, genmake
91            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
92            "usual suspects" such as g77, f77, etc.            "usual suspects" such as g77, f77, etc.
93    
94      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME      -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95            Use "NAME" as the C compiler.  By default, genmake            Use "NAME" as the C compiler.  By default, genmake
96            will search for a working compiler by trying a list of            will search for a working compiler by trying a list of
97            "usual suspects" such as gcc, c89, cc, etc.            "usual suspects" such as gcc, c89, cc, etc.
98    
99      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4      -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)            Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101            *only* works if CPP_EEOPTIONS.h allows this.            *only* works if CPP_EEOPTIONS.h allows this.
102    
103      -ignoretime | -ignore_time | --ignoretime | --ignore_time      -ignoretime | -ignore_time | --ignoretime | --ignore_time
104            Ignore all the "wall clock" routines entirely.  This will            Ignore all the "wall clock" routines entirely.  This will
105            not in any way hurt the model results -- it simply means            not in any way hurt the model results -- it simply means
106            that the code that checks how long the model spends in            that the code that checks how long the model spends in
107            various routines will give junk values.            various routines will give junk values.
108    
109      -ts | --ts      -ts | --ts
110            Produce timing information per timestep            Produce timing information per timestep
111      -papis | --papis      -papis | --papis
112            Produce summary MFlop/s (and IPC) with PAPI per timestep            Produce summary MFlop/s (and IPC) with PAPI per timestep
113      -pcls | --pcls      -pcls | --pcls
114            Produce summary MFlop/s etc. with PCL per timestep            Produce summary MFlop/s etc. with PCL per timestep
115      -foolad | --foolad      -foolad | --foolad
116            Fool the AD code generator            Fool the AD code generator
117      -papi | --papi      -papi | --papi
118            Performance analysis with PAPI            Performance analysis with PAPI
119      -pcl | --pcl      -pcl | --pcl
120            Performance analysis with PCL            Performance analysis with PCL
121      -hpmt | --hpmt      -hpmt | --hpmt
122            Performance analysis with the HPM Toolkit            Performance analysis with the HPM Toolkit
123    
124      -ieee | --ieee      -ieee | --ieee
125            use IEEE numerics.  Note that this option *only* works            use IEEE numerics.  Note that this option *only* works
126            if it is supported by the OPTFILE that is being used.            if it is supported by the OPTFILE that is being used.
127      -devel | --devel      -devel | --devel
128            Add additional warning and debugging flags for development            Add additional warning and debugging flags for development
129            (if supported by the OPTFILE); also switch to IEEE numerics.            (if supported by the OPTFILE); also switch to IEEE numerics.
130      -gsl | --gsl      -gsl | --gsl
131            Use GSL to control floating point rounding and precision            Use GSL to control floating point rounding and precision
132    
133      -mpi | --mpi      -mpi | --mpi
134            Include MPI header files and link to MPI libraries            Include MPI header files and link to MPI libraries
135      -mpi=PATH | --mpi=PATH      -mpi=PATH | --mpi=PATH
136            Include MPI header files and link to MPI libraries using MPI_ROOT            Include MPI header files and link to MPI libraries using MPI_ROOT
137            set to PATH. i.e. Include files from \$PATH/include, link to libraries            set to PATH. i.e. Include files from \$PATH/include, link to libraries
138            from \$PATH/lib and use binaries from \$PATH/bin.            from \$PATH/lib and use binaries from \$PATH/bin.
139    
140      -omp | --omp      -omp | --omp
141            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
142      -omp=OMPFLAG | --omp=OMPFLAG      -omp=OMPFLAG | --omp=OMPFLAG
143            Activate OpenMP code + use Compiler option OMPFLAG            Activate OpenMP code + use Compiler option OMPFLAG
144    
145      -es | --es | -embed-source | --embed-source      -es | --es | -embed-source | --embed-source
146            Embed a tarball containing the full source code            Embed a tarball containing the full source code
147            (including the Makefile, etc.) used to build the            (including the Makefile, etc.) used to build the
148            executable [off by default]            executable [off by default]
149    
150      -ds | --ds      -ds | --ds
151            Report genmake internal variables status (DUMPSTATE)            Report genmake internal variables status (DUMPSTATE)
152            to file "genmake_state" (for debug purpose)            to file "genmake_state" (for debug purpose)
153    
154    While it is most often a single word, the "NAME" variables specified    While it is most often a single word, the "NAME" variables specified
155    above can in many cases be a space-delimited string such as:    above can in many cases be a space-delimited string such as:
# Line 174  EOF Line 174  EOF
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 203  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 305  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 335  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336      echo >> $LOGFILE      echo >> $LOGFILE
337      echo "running: look_for_makedepend()" >> $LOGFILE      echo "running: look_for_makedepend()" >> $LOGFILE
# Line 354  look_for_makedepend()  { Line 342  look_for_makedepend()  {
342              build_cyrus_makedepend              build_cyrus_makedepend
343              RETVAL=$?              RETVAL=$?
344              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" != x0 ; then
345                  echo "WARNING: unable to build cyrus-makedepend. Try 'makedepend'"                  echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                  MAKEDEPEND=                  MAKEDEPEND=
347              fi              fi
348          else          else
# Line 367  look_for_makedepend()  { Line 355  look_for_makedepend()  {
355          fi          fi
356      fi      fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
358          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
360          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
# Line 384  EOF Line 370  EOF
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE              echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    system-default makedepend not found. Try to build cyrus-makedepend"              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  echo "WARNING: unable to build cyrus-makedepend. Use local xmakedepend"                  echo "  Works"
400                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'              else
401                  echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE                  echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
407          fi          fi
408      fi      fi
# Line 412  build_cyrus_makedepend()  { Line 415  build_cyrus_makedepend()  {
415      (      (
416          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
418              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
419          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
420              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
421          fi          fi
# Line 436  build_embed_encode() Line 439  build_embed_encode()
439  {  {
440      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
441      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443              echo              echo
444              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445              echo              echo
446              EMBED_SRC=f              EMBED_SRC=f
447              return 1              return 1
448          fi          fi
449          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
450          for ic in $clist ; do          for ic in $clist ; do
451              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
# Line 578  EOF Line 581  EOF
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587    
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
# Line 597  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603    }
604    
605  #     # look for possible MPI libraries  #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606  #     mpi_libs=  #  checking for additional included headers (in case of chain of included header)
607  #     mpi_fort=`which mpif77 2>/dev/null`  mpi_headers_do_local_copy() {
608  #     RETVAL=$?  
609  #     if test "x${RETVAL}" = x0 ; then      dBug=0
610  #       cat >>test.f <<EOF      #----- check for additional headers (chain of included headers)
611  #       PROGRAM HELLO      listIni=$MPI_HEADER_FILES
612  #       DO 10, I=1,10      echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
613  #       PRINT *,'Hello World'      outp=$?
614  #    10 CONTINUE      #- always check mpif.h (the only mpi-header included in standard MITgcm code)
615  #       STOP      if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
616  #       END      if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
617  # EOF      doCheck=1 ; list2copy='' ; list2check=$listIni
618  #       eval "$mpi_fort -showme test.f > out"      while test $doCheck = 1 ; do
619  #       RETVAL=$?          newList=''
620  #       if test "x${RETVAL}" = x0 ; then          for i in $list2check ; do
621  #           a=`cat out`           if test -f $MPIINCLUDEDIR/$i ; then
622  #           for i in $a ; do              newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
623  #               case $i in                  sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
624  #                   -*)             if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
625  #                       mpi_libs="$mpi_libs $i" ;;             for j in $newInc ; do
626  #               esac               echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
627  #           done               outp=$?
628  #           echo "The MPI libs appear to be:"               if test $outp != 0 ; then
629  #           echo "  "$mpi_libs                  if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
630  #       fi                  newList="$newList $j"
631  #       rm -f test.f out               fi
632  #     fi             done
633               if test $dBug = 1 ; then echo "" ; fi
634             fi
635            done
636            if test "x$newList" = x ; then doCheck=0
637            else list2check=$newList ; list2copy="$list2copy $newList"
638            fi
639        done
640        list2copy="$MPI_HEADER_FILES $list2copy"
641        if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
642        #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
643        mkListInc=0
644        for i in $list2copy ; do
645            if test -f $MPIINCLUDEDIR/$i ; then
646                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
647                if test $i = 'mpif.h' ; then
648                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
649                fi
650                if test $mkListInc = 1 ; then
651                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
652                fi
653                if test "x$LOCAL_MPI_HEADERS" = x ; then
654                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=1
655                fi
656            fi
657        done
658  }  }
659    
660  #  Parse the package dependency information  #  Parse the package dependency information
# Line 650  get_fortran_c_namemangling()  { Line 679  get_fortran_c_namemangling()  {
679    
680      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
681      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
682          return 0          return 0
683      fi      fi
684      echo " running: get_fortran_c_namemangling()" >> $LOGFILE      echo " running: get_fortran_c_namemangling()" >> $LOGFILE
685    
# Line 947  check_netcdf_libs()  { Line 976  check_netcdf_libs()  {
976        program fgennc        program fgennc
977  #include "netcdf.inc"  #include "netcdf.inc"
978  EOF  EOF
979      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
980          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
981      fi     #fi
982      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
983        integer iret, ncid, xid        integer iret, ncid, xid
984        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 1037  check_lapack_libs()  { Line 1066  check_lapack_libs()  {
1066      echo "running: check_lapack_libs()" >> $LOGFILE      echo "running: check_lapack_libs()" >> $LOGFILE
1067      cat <<EOF > genmake_tla.F      cat <<EOF > genmake_tla.F
1068        program fgenla        program fgenla
1069        integer info        integer info
1070        integer ipiv( 2 )        integer ipiv( 2 )
1071        double precision ab( 4, 2 ), b( 2 )        double precision ab( 4, 2 ), b( 2 )
1072        data ab / 0., 0., 1., 2., 0., 2., 1., 0. /        data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
# Line 1108  EOF Line 1137  EOF
1137                  LIBS="$LIBS -llapack -lf77blas -lcblas"                  LIBS="$LIBS -llapack -lf77blas -lcblas"
1138                  HAVE_LAPACK=t                  HAVE_LAPACK=t
1139                  echo "check_lapack: successful" >> $LOGFILE                  echo "check_lapack: successful" >> $LOGFILE
1140              else              else
1141              # try again with "-latlas" added to the libs              # try again with "-latlas" added to the libs
1142                  echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log                  echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1143                  echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log                  echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1144                  echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log                  echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1145                  echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log                  echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1146                  cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \                  cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1147                      &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \                      &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1148                      &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1                      &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1149                  RET_COMPILE=$?                  RET_COMPILE=$?
1150                  echo >> $LOGFILE                  echo >> $LOGFILE
1151                  cat genmake_tla.log >> $LOGFILE                  cat genmake_tla.log >> $LOGFILE
1152                  if test "x$RET_COMPILE" = x0 ; then                  if test "x$RET_COMPILE" = x0 ; then
1153                      LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"                      LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1154                      HAVE_LAPACK=t                      HAVE_LAPACK=t
1155                      echo "check_lapack: successful" >> $LOGFILE                      echo "check_lapack: successful" >> $LOGFILE
1156                  fi                  fi
1157              fi              fi
1158          fi          fi
1159      fi      fi
# Line 1132  EOF Line 1161  EOF
1161      echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE      echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1162  }  }
1163    
1164    check_HAVE_FLUSH()  {
1165        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1166            return
1167        fi
1168        echo >> $LOGFILE
1169        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1170        cat <<EOF > genmake_tflsh.$FS
1171          program fgenflsh
1172          integer iounit
1173          character*9 fname
1174          iounit = 26
1175          fname = 'tmp.tflsh'
1176          open(iounit,FILE=fname,STATUS='unknown')
1177          write(iounit,*) 'genmake_tflsh: hello'
1178          call flush(iounit)
1179          close(iounit)
1180          end
1181    EOF
1182        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1183        cat genmake_tflsh.$FS >> genmake_tflsh.log
1184        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1185    
1186        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1187        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1188        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1189            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1190        RET_COMPILE=$?
1191    
1192        if test "x$RET_COMPILE" = x0 ; then
1193            HAVE_FLUSH=t
1194            #cat genmake_tflsh.log >> $LOGFILE
1195            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1196        else
1197            HAVE_FLUSH=f
1198            cat genmake_tflsh.log >> $LOGFILE
1199        fi
1200        rm -f genmake_tflsh*
1201        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1202    }
1203    
1204  ###############################################################################  ###############################################################################
1205  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1189  GSL= Line 1257  GSL=
1257  DEVEL=  DEVEL=
1258  HAVE_TEST_L=  HAVE_TEST_L=
1259    
1260    # comment this line out to enable lapack test
1261    SKIP_LAPACK_CHECK=t
1262    
1263  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1264  HAVE_SYSTEM=  HAVE_SYSTEM=
1265  HAVE_FDATE=  HAVE_FDATE=
# Line 1200  HAVE_NETCDF= Line 1271  HAVE_NETCDF=
1271  HAVE_ETIME=  HAVE_ETIME=
1272  IGNORE_TIME=  IGNORE_TIME=
1273  HAVE_LAPACK=  HAVE_LAPACK=
1274    HAVE_FLUSH=
1275    
1276  MODS=  MODS=
1277  TOOLSDIR=  TOOLSDIR=
# Line 1207  SOURCEDIRS= Line 1279  SOURCEDIRS=
1279  INCLUDEDIRS=  INCLUDEDIRS=
1280  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1281    
1282    #- local config file
1283    gm_local="genmake_local"
1284    
1285  G2ARGS=  G2ARGS=
1286  BASH=  BASH=
1287  PWD=`pwd`  PWD=`pwd`
# Line 1242  FTL_TAF_FLAGS= Line 1317  FTL_TAF_FLAGS=
1317  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1318  TAMC_EXTRA=  TAMC_EXTRA=
1319    
1320    DIVA=
1321    MPIINCLUDEDIR=
1322    MPI_HEADER_FILES=
1323    LOCAL_MPI_HEADERS=
1324    
1325  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1326  gm_s1="OPTFILE PKG_DEPEND PKG_GROUPS DISABLE ENABLE MAKEFILE MAKEDEPEND PLATFORM"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1327  gm_s2="FC CC MPI OMP USE_R4 TS PAPIS PCLS PAPI PCL HPMT IEEE DEVEL GSL FEXTRAFLAGS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1328  gm_s3="ROOTDIR STANDARDDIRS MODS DUMPSTATE"  gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1329    
1330  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1331  gm_s4="LN S64 LINK MAKE PACKAGES INCLUDES FFLAGS FOPTIM"  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1332  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1333  gm_s6="TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1334  gm_s7="PWD THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1335  gm_s8="FC_NAMEMANGLE HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1336    
1337  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1338  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1339  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1340  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1341    
1342  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1343  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
# Line 1278  LOGFILE="genmake.log" Line 1358  LOGFILE="genmake.log"
1358  rm -f genmake_state genmake_*optfile $LOGFILE  rm -f genmake_state genmake_*optfile $LOGFILE
1359    
1360  echo "===  Processing options files and arguments  ==="  echo "===  Processing options files and arguments  ==="
 gm_local="genmake_local"  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
1361    
1362  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
1363  #parse_options  #parse_options
# Line 1306  for ac_option in "$@" ; do Line 1376  for ac_option in "$@" ; do
1376      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1377    
1378      case $ac_option in      case $ac_option in
1379            
1380          -help | --help | -h | --h)          -help | --help | -h | --h)
1381              usage ;;              usage ;;
1382            
1383          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1384              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1385          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1386              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1387          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1388              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1389            
1390          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1391              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1392          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1393              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1394            
1395          -pdepend | --pdepend)          -pdepend | --pdepend)
1396              ac_prev=PKG_DEPEND ;;              ac_prev=PKG_DEPEND ;;
1397          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1398              PKG_DEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1399            
1400          -pgroups | --pgroups)          -pgroups | --pgroups)
1401              ac_prev=PKG_GROUPS ;;              ac_prev=PKG_GROUPS ;;
1402          -pgroups=* | --pgroups=*)          -pgroups=* | --pgroups=*)
1403              PKG_GROUPS=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1404            
1405          -make | --make | -m | --m)          -make | --make | -m | --m)
1406              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1407          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1408              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1409            
1410          -bash | --bash)          -bash | --bash)
1411              ac_prev=BASH ;;              ac_prev=BASH ;;
1412          -bash=* | --bash=*)          -bash=* | --bash=*)
1413              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1414            
1415          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1416              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1417          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1418              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1419            
1420          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1421              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1422          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1423              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1424            
1425          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1426              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1427              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1428              echo              echo
1429              usage              usage
1430              ;;              ;;
1431            
1432          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1433              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1434          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1435              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1436            
1437          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1438              ac_prev=MODS ;;              ac_prev=MODS ;;
1439          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1440              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1441            
1442          -disable | --disable)          -disable | --disable)
1443              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1444          -disable=* | --disable=*)          -disable=* | --disable=*)
1445              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1446            
1447          -enable | --enable)          -enable | --enable)
1448              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1449          -enable=* | --enable=*)          -enable=* | --enable=*)
1450              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1451            
1452          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1453              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1454          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1388  for ac_option in "$@" ; do Line 1458  for ac_option in "$@" ; do
1458  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1459  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1460  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1461            
1462          -cc | --cc)          -cc | --cc)
1463              ac_prev=CC ;;              ac_prev=CC ;;
1464          -cc=* | --cc=*)          -cc=* | --cc=*)
1465              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1466            
1467          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1468              ac_prev=FC ;;              ac_prev=FC ;;
1469          -fc=* | --fc=*)          -fc=* | --fc=*)
1470              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1471            
1472          -fs | --fs)          -fs | --fs)
1473              ac_prev=FS ;;              ac_prev=FS ;;
1474          -fs=* | --fs=*)          -fs=* | --fs=*)
1475              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1476            
1477          -fs90 | --fs90)          -fs90 | --fs90)
1478              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1479          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1480              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1481            
1482          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )          -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1483              USE_R4=true ;;              USE_R4=true ;;
1484    
# Line 1416  for ac_option in "$@" ; do Line 1486  for ac_option in "$@" ; do
1486              IEEE=true ;;              IEEE=true ;;
1487          -noieee | --noieee)          -noieee | --noieee)
1488              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1489          -devel | --devel)          -devel | --devel)
1490              IEEE=true ; DEVEL=true ;;              IEEE=true ; DEVEL=true ;;
1491          -gsl | --gsl)          -gsl | --gsl)
1492              GSL=true ;;              GSL=true ;;
1493    
1494          -ts | --ts)          -ts | --ts)
# Line 1441  for ac_option in "$@" ; do Line 1511  for ac_option in "$@" ; do
1511          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1512              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1513              MPI=true ;;              MPI=true ;;
1514            
1515          -omp | --omp)          -omp | --omp)
1516              OMP=true ;;              OMP=true ;;
1517          -omp=* | --omp=*)          -omp=* | --omp=*)
1518              OMPFLAG=$ac_optarg              OMPFLAG=$ac_optarg
1519              OMP=true ;;              OMP=true ;;
1520            
1521          -ds | --ds)          -ds | --ds)
1522              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1523            
1524          -extra_flag | --extra_flag)          -extra_flag | --extra_flag)
1525              ac_prev=FEXTRAFLAGS ;;              ac_prev=FEXTRAFLAGS ;;
1526          -extra_flag=* | --extra_flag=*)          -extra_flag=* | --extra_flag=*)
1527              FEXTRAFLAGS=$ac_optarg ;;              FEXTRAFLAGS=$ac_optarg ;;
1528            
1529          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1530              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1531          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1465  for ac_option in "$@" ; do Line 1535  for ac_option in "$@" ; do
1535              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1536          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1537              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1538            
1539          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1540              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1541    
# Line 1476  for ac_option in "$@" ; do Line 1546  for ac_option in "$@" ; do
1546              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1547              usage              usage
1548              ;;              ;;
1549            
1550          *)          *)
1551              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1552              usage              usage
1553              ;;              ;;
1554            
1555      esac      esac
1556    
1557  done  done
1558    
1559    printf "  getting local config information:  "
1560    if test -f $gm_local ; then
1561        echo "using $gm_local"
1562        . $gm_local
1563    else
1564        echo "none found"
1565    fi
1566    
1567  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1568      echo      echo
1569      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
# Line 1697  check_for_broken_Ff Line 1775  check_for_broken_Ff
1775    
1776  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1777        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1778        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1779    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1780    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1781  fi  fi
1782  if test ! "x$OMP" = x ; then  if test ! "x$OMP" = x ; then
1783        echo "  Add OMPFLAG and turn on OpenMP cpp macros"        echo "  Add OMPFLAG and turn on OpenMP cpp macros"
# Line 1714  fi Line 1794  fi
1794  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1795        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1796        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1797              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1798        else        else
1799              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1800        fi        fi
# Line 1750  if test ! "x$PAPI" = x ; then Line 1830  if test ! "x$PAPI" = x ; then
1830            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1831        else        else
1832            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1833            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1834            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1835            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1836            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1762  if test ! "x$PCL" = x ; then Line 1842  if test ! "x$PCL" = x ; then
1842            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1843        else        else
1844            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1845            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1846            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1847            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1848            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1772  if test ! "x$HPMT" = x ; then Line 1852  if test ! "x$HPMT" = x ; then
1852        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1853            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1854            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1855        else if test ! "x$PCL" = x ; then        else
1856            if test ! "x$PCL" = x ; then
1857            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1858            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1859        else          else
1860            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1861            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1862            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1863            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1864            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1865        fi          fi
1866        fi        fi
1867  fi  fi
1868  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1921  if test "x$HAVE_LAPACK" != x ; then Line 2002  if test "x$HAVE_LAPACK" != x ; then
2002  else  else
2003      echo "no"      echo "no"
2004  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2005    
2006    printf "  Can we call FLUSH intrinsic subroutine...  "
2007    check_HAVE_FLUSH
2008    if test "x$HAVE_FLUSH" = xt ; then
2009        DEFINES="$DEFINES -DHAVE_FLUSH"
2010        echo "yes"
2011    else
2012        echo "no"
2013    fi
2014    
2015    DEFINES="$DEFINES $IGNORE_TIME"
2016  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2017      build_embed_encode      build_embed_encode
2018  fi  fi
# Line 2106  else Line 2196  else
2196          exit 1          exit 1
2197      else      else
2198          echo "    using PKG_LIST=\"$PKG_LIST\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2199          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2200          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2201          RETVAL=$?          RETVAL=$?
2202          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
# Line 2156  for i in $PACKAGES ; do Line 2246  for i in $PACKAGES ; do
2246      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2247      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2248          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2249          exit 1          exit 1
2250      fi      fi
2251      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2252  done  done
# Line 2201  else Line 2291  else
2291          echo "Error: problem encountered while building source files in pkg/mnc:"          echo "Error: problem encountered while building source files in pkg/mnc:"
2292          cat make_mnc.errors 1>&2          cat make_mnc.errors 1>&2
2293          if test "x$mnc_in" = x0 ; then          if test "x$mnc_in" = x0 ; then
2294              exit 1              exit 1
2295          else          else
2296              DISABLE="$DISABLE mnc"              DISABLE="$DISABLE mnc"
2297          fi          fi
# Line 2300  if  test "x${PKG_DEPEND}" != x ; then Line 2390  if  test "x${PKG_DEPEND}" != x ; then
2390    
2391          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2392          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2393              #echo "   " $pname ": need to add :" $dname              #echo "   " $pname ": need to add :" $dname
2394              in_dis="f"              in_dis="f"
2395              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2396                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2325  if  test "x${PKG_DEPEND}" != x ; then Line 2415  if  test "x${PKG_DEPEND}" != x ; then
2415              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2416              exit 1              exit 1
2417          fi          fi
2418          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2419          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2420      done      done
2421      ck=$ck"t"      ck=$ck"t"
# Line 2366  for n in $names ; do Line 2456  for n in $names ; do
2456          done          done
2457          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2458              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2459              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2460          fi          fi
2461      fi      fi
2462  done  done
# Line 2379  for i in $PACKAGES ; do Line 2469  for i in $PACKAGES ; do
2469  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2470      case $i in      case $i in
2471          aim_v23)          aim_v23)
2472              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2473              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2474              ;;              ;;
2475      esac      esac
# Line 2421  for i in $spaths ; do Line 2511  for i in $spaths ; do
2511      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2512          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2513          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2514          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2515          for n in $names ; do          for n in $names ; do
2516              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2517          done          done
2518      fi      fi
2519      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2520      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2521          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2522          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2523  #**** not yet enabled ****  #**** not yet enabled ****
2524  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2525  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2468  for i in $INCLUDEDIRS ; do Line 2558  for i in $INCLUDEDIRS ; do
2558      fi      fi
2559  done  done
2560    
2561  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2562      echo "  Creating the pseudo-MPI include directory"    if test ! "x$MPIINCLUDEDIR" = x ; then
2563      INCLUDES="-I./mpi_headers $INCLUDES"      if test -d $MPIINCLUDEDIR ; then
2564      rm -rf ./mpi_headers          echo "  Creating the pseudo-MPI include directory"
2565      mkdir -p ./mpi_headers          INCLUDES="-I./mpi_headers $INCLUDES"
2566            rm -rf ./mpi_headers
2567      if test "x$MPIINCLUDEDIR" = x ; then          mkdir -p ./mpi_headers
2568          if test "x$MPIHOME" = x ; then          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2569              MPIHOME='/usr'          #   checking for additional included headers (in case of chain of included
2570          fi          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2571          MPIINCLUDEDIR='$MPIHOME/include'          mpi_headers_do_local_copy
     fi  
   
     if test -r $MPIINCLUDEDIR/mpif.h ; then  
         for i in $MPI_HEADER_FILES; do  
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
2572      else      else
2573          echo " We cannot create a copy of mpif.h!"          echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a dir"
2574            echo "WARNING: ==> cannot create pseudo-MPI include directory"
2575  #       exit -1  #       exit -1
2576      fi      fi
2577      fi
2578  fi  fi
2579    
2580  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
# Line 2520  if test "x$OPENAD" != x ; then Line 2604  if test "x$OPENAD" != x ; then
2604      OAD_DONT_TRANSFORM="/dev/null"      OAD_DONT_TRANSFORM="/dev/null"
2605      OAD_KEEP_ORIGINAL="/dev/null"      OAD_KEEP_ORIGINAL="/dev/null"
2606      OAD_CB2M_FILES="/dev/null"      OAD_CB2M_FILES="/dev/null"
2607        OADTOOLS="$TOOLSDIR/OAD_support"
2608        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2609    cat >> "oadtempflile" <<EOF
2610    $OADTOOLS
2611    EOF
2612      echo "  looking for dontCompile file:  "      echo "  looking for dontCompile file:  "
2613      for i in "." $MODS ; do      for i in "." $MODS ; do
2614          if test -r $i"/dontCompile" ; then          if test -r $i"/dontCompile" ; then
# Line 2575  for d in $alldirs ; do Line 2664  for d in $alldirs ; do
2664          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2665              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2666                  ignore_f=f                  ignore_f=f
2667                  case $d/$sf in                  case $d/$sf in
2668                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2669                          ignore_f=t                          ignore_f=t
2670                          ;;                          ;;
2671                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2672                          ignore_f=t                          ignore_f=t
2673                          ;;                          ;;
2674                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2675                          ignore_f=t                          ignore_f=t
2676                          ;;                          ;;
2677                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2678                          ignore_f=t                          ignore_f=t
2679                          ;;                          ;;
2680                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2681                          ignore_f=t                          ignore_f=t
2682                          ;;                          ;;
2683                    *)                    *)
2684                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2685                          #  ignore all soft-links                          #  ignore all soft-links
2686                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2601  for d in $alldirs ; do Line 2690  for d in $alldirs ; do
2690                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2691                          fi                          fi
2692                          ;;                          ;;
2693                  esac                  esac
2694                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2695                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2696                      case $extn in                      case $extn in
# Line 2648  for d in $alldirs ; do Line 2737  for d in $alldirs ; do
2737                          echo    " \\"  >> hsrclist.tmp                          echo    " \\"  >> hsrclist.tmp
2738                          printf " $sf" >> hsrclist.tmp                          printf " $sf" >> hsrclist.tmp
2739                          ;;                          ;;
2740                      flow)                      flow)
2741                          echo    " \\"  >> ad_flow_files.tmp                          echo    " \\"  >> ad_flow_files.tmp
2742                          printf " $sf" >> ad_flow_files.tmp                          printf " $sf" >> ad_flow_files.tmp
2743                          ;;                          ;;
# Line 2659  for d in $alldirs ; do Line 2748  for d in $alldirs ; do
2748      done      done
2749      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2750        if test "$d" != "." ; then        if test "$d" != "." ; then
2751          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2752          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2753          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2754  # We need to make sure that the link isn't already there.  # We need to make sure that the link isn't already there.
# Line 2680  echo "" >> ad_flow_files.tmp Line 2769  echo "" >> ad_flow_files.tmp
2769  CMDLINE=$0  CMDLINE=$0
2770  for xx in "$@" ; do nw=`echo $xx | wc -w`  for xx in "$@" ; do nw=`echo $xx | wc -w`
2771      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"      if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2772                          else CMDLINE="$CMDLINE '$xx'" ; fi                          else CMDLINE="$CMDLINE '$xx'" ; fi
2773  done  done
2774    
2775  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
# Line 2714  cat >>$MAKEFILE <<EOF Line 2803  cat >>$MAKEFILE <<EOF
2803  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2804  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2805  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2806  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2807  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2808  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2729  INCLUDEDIRS = ${INCLUDEDIRS} Line 2816  INCLUDEDIRS = ${INCLUDEDIRS}
2816  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2817  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2818  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2819    OADTOOLS    = ${OADTOOLS}
2820    
2821  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2822  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2749  else Line 2837  else
2837      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2838  fi  fi
2839    
2840    # extract default cpp search path so we can pass it to makedepend
2841    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2842    
2843  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2844  # Unix ln (link)  # Unix ln (link)
2845  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2846  # Dependency generator  # Dependency generator
2847  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2848  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2771  LINK = ${LINK} ${LDADD} Line 2860  LINK = ${LINK} ${LDADD}
2860  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2861  # Includes for CPP  # Includes for CPP
2862  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2863    # default CPP includes for makedepend
2864    CPPINCLUDES = ${CPPINCLUDES}
2865  # Flags for KPP  # Flags for KPP
2866  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2867  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
# Line 2789  NOOPTFLAGS = ${NOOPTFLAGS} Line 2880  NOOPTFLAGS = ${NOOPTFLAGS}
2880  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2881  LIBS = ${LIBS}  LIBS = ${LIBS}
2882  # Name of the makefile  # Name of the makefile
2883  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2884    # Name of the make program
2885    MAKE = ${MAKE}
2886    
2887  EOF  EOF
2888    
# Line 2813  echo >> $MAKEFILE Line 2906  echo >> $MAKEFILE
2906  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE  echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2907  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE  echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2908  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE  echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2909  echo 'FLOFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE  echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2910  echo >> $MAKEFILE  echo >> $MAKEFILE
2911  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2912  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
2913    
2914  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2915    
2916  all: \$(EXECUTABLE)  all: fwd_exe_target
2917    fwd_exe_target:
2918            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2919            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2920            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2921            @-rm -f ad_config.template
2922            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2923    
2924  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2925          @echo Creating \$@ ...          @echo Creating \$@ ...
2926          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2927    
2928  depend:  depend:
2929          @make -f \$(MAKEFILE) links          @\$(MAKE) -f \$(MAKEFILE) links
2930          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2931          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2932          -rm -f makedepend.out          -rm -f makedepend.out
2933    
# Line 2856  clean: Line 2956  clean:
2956    
2957  # remove most of the files that "make" and "make depend" generate  # remove most of the files that "make" and "make depend" generate
2958  Clean:  Clean:
2959          @make -f \$(MAKEFILE) clean          @\$(MAKE) -f \$(MAKEFILE) clean
2960          @make -f \$(MAKEFILE) cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2961          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2962          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
         -rm -f genmake_warnings genmake_errors make.log  
2963    
2964  # remove also the executable, files that "genmake2" generates (except Makefile)  # remove also the executable, files that "genmake2" generates (except Makefile)
2965  #         and output from a run (plus log files from testreport)  #         and output from a run (plus log files from testreport)
2966  CLEAN:  CLEAN:
2967          @make -f \$(MAKEFILE) Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2968          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak          -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2969          -rm -f $LOGFILE genmake_state genmake_*optfile          -rm -f $LOGFILE genmake_state genmake_*optfile
2970          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log          -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2971            -rm -rf mpi_headers mnc_test_*
2972          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2973          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2974          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2975          -rm -f *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2976          -rm -f *_MIT_CE_000.opt0000 costfunction*0000          -rm -f *_MIT_CE_000.opt0000 costfunction*0000 costfinal
2977          -rm -rf mnc_test_*          -rm -f divided.ctrl snapshot* oad_cp.000.[0-9][0-9][0-9][0-9][0-9]
2978    
2979  makefile:  makefile:
2980          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
# Line 2884  cleanlinks: Line 2984  cleanlinks:
2984  # Special targets (SPECIAL_FILES) which are created by make  # Special targets (SPECIAL_FILES) which are created by make
2985  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2986          @echo Creating \$@ ...          @echo Creating \$@ ...
2987          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2988  AD_CONFIG.h:  AD_CONFIG.h:
2989          @echo Creating \$@ ...          @echo Creating \$@ ...
2990          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2991  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2992          @echo Creating \$@ ...          @echo Creating \$@ ...
2993          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2927  cat >>$MAKEFILE <<EOF Line 3027  cat >>$MAKEFILE <<EOF
3027  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3028  ## %.o : %.F  ## %.o : %.F
3029    
3030    # C preprocessing and replacing the _d in constants:
3031    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3032    
3033  .F.$FS:  .F.$FS:
3034          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3035  .$FS.o:  .$FS.o:
3036          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3037  .F.o:  .F.o:
3038          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3039  .F90.$FS90:  .F90.$FS90:
3040          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3041  .FF90.f$FS90:  .FF90.f$FS90:
3042          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3043  .$FS90.o:  .$FS90.o:
3044          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3045  .f$FS90.o:  .f$FS90.o:
# Line 2945  cat >>$MAKEFILE <<EOF Line 3048  cat >>$MAKEFILE <<EOF
3048  .c.o:  .c.o:
3049          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3050  .flow.flowdir:  .flow.flowdir:
3051          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3052    
3053  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3054  .F.p:  .F.p:
3055          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3056  .p.$FS:  .p.$FS:
3057          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3058    
# Line 2968  TAF            = ${TAF} Line 3071  TAF            = ${TAF}
3071    
3072  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3073  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3074    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3075    
3076  EOF  EOF
3077    
# Line 2996  rm -f adSrcFiles.tmp Line 3100  rm -f adSrcFiles.tmp
3100  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3101    
3102  # ... AD ...  # ... AD ...
3103  adall: \$(EXE_AD)  adall: ad_exe_target
3104  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3105  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3106    
3107  ad_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES) \$(AD_FLOW_FILES)  ad_exe_target:
3108          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3109            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3110            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3111            @-rm -f ad_config.template
3112            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3113    
3114    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3115            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3116          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3117          -rm -f ad_config.template          @-rm -f ad_config.template
3118          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3119          @make -f \$(MAKEFILE) \$(FLOFILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3120          cat \$(FLOFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3121    
3122  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3123          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
# Line 3018  adtafonly: Line 3129  adtafonly:
3129          ls -l ad_input_code_ad.$FS          ls -l ad_input_code_ad.$FS
3130          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3131    
3132  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3133          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3134    
3135  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
# Line 3037  adtrick: Line 3148  adtrick:
3148  adobj: ad_taf_output.o \$(OBJFILES)  adobj: ad_taf_output.o \$(OBJFILES)
3149    
3150  # ... FTL ...  # ... FTL ...
3151  ftlall: \$(EXE_FTL)  ftlall: ftl_exe_target
3152  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3153  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3154    
3155  ftl_input_code.$FS: \$(AD_FILES) \$(H_SRC_FILES)  ftl_exe_target:
3156          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3157          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3158          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3159          @make -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)          @-rm -f ad_config.template
3160          @make -f \$(MAKEFILE) \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3161    
3162    ftl_input_code.$FS: \$(AD_FILES)
3163            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3164            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3165            @-rm -f ad_config.template
3166            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3167            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3168          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS          cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3169    
3170  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
# Line 3059  ftltafonly: Line 3177  ftltafonly:
3177          ls -l ftl_input_code_ftl.$FS          ls -l ftl_input_code_ftl.$FS
3178          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3179    
3180  \${EXE_FTL}: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3181          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3182    
3183  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
# Line 3089  svd_touch: Line 3207  svd_touch:
3207          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3208          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3209          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3210          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3211          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3212          -rm -f ftl_config.template          @-rm -f ad_config.template
3213    
3214  EOF  EOF
3215    
# Line 3175  w2f__types.F90 \ Line 3293  w2f__types.F90 \
3293  OAD_active.F90 \  OAD_active.F90 \
3294  OAD_cp.F90 \  OAD_cp.F90 \
3295  OAD_rev.F90 \  OAD_rev.F90 \
3296  OAD_tape.F90  OAD_tape.F90 \
3297    revolve.F90
3298    
3299  OPENAD_SUPPORT_C_SRC_FILES = \  OPENAD_SUPPORT_C_SRC_FILES = \
3300  iaddr.c \  iaddr.c \
# Line 3201  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N Line 3320  AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(N
3320          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3321    
3322  # create sources files modules from header files containing common blocks  # create sources files modules from header files containing common blocks
3323  %_mod.FF90 : %.h ../OAD_support/cb2mGetModules.csh ../OAD_support/cb2mGetModules.awk  %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3324          ../OAD_support/cb2mGetModules.csh $< ../OAD_support/cb2mGetModules.awk          \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3325    
3326  # create new header files with USE statements for the new modules made above  # create new header files with USE statements for the new modules made above
3327  %_mod.h : %.h ../OAD_support/cb2mGetHeaders.csh ../OAD_support/cb2mGetHeaders.awk  %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3328          ../OAD_support/cb2mGetHeaders.csh $< ../OAD_support/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)          \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3329    
3330  # change the include directives of everybody to refer to  the new header files with the USE statements  # change the include directives of everybody to refer to  the new header files with the USE statements
3331  %_cb2m.FF90 : %.F ../OAD_support/cb2mUseModules.bash  %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3332          ../OAD_support/cb2mUseModules.bash $< ${MPI}          \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3333    
3334  # makefile debug rule  # makefile debug rule
3335  small_f: \$(CB2M_F90_PP_SRC_FILES)  small_f: \$(CB2M_F90_PP_SRC_FILES)
# Line 3227  ad_input_code.f$FS90:  \$(CB2M_AD_FILES) Line 3346  ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3346          cat \$^ > \$@          cat \$^ > \$@
3347    
3348  # canonicalizer  # canonicalizer
3349  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)  ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3350          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^          \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3351    
3352  # replace stop statements (to avoid the implied unstructured control flow)  with print statements  # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3353  ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90  ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3354          cat \$< | sed -f ../OAD_support/stop2print.sed > ad_input_code_sf.pre.s2p.f90          cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3355    
3356  # F -> WHIRL  # F -> WHIRL
3357  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90  ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3358          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90          \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3359    
3360  # WHIRL -> XAIF  # WHIRL -> XAIF
3361  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B  ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3362          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<          \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3363    
3364  # XAIF -> XAIF'  # XAIF -> XAIF'
3365  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd  ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3366          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r          \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3367    
3368  # XAIF' -> WHIRL'  # XAIF' -> WHIRL'
3369  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif  ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3370          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<          \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3371    
3372  # WHIRL' -> F'  # WHIRL' -> F'
3373  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B  ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3374          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<          \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3375    
3376  # insert template directives  # insert template directives
3377  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 ../OAD_support/insertTemplateDir.bash  ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3378          ../OAD_support/insertTemplateDir.bash \$< \$@          \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3379    
3380  PPEXTRAS=\$(wildcard ../OAD_support/ad_template.*.F) ../OAD_support/ad_inline.F  PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3381  # postprocess F'  # postprocess F'
3382  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90  postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3383          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i ../OAD_support/ad_inline.f \$<          \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3384          # the target is a placeholder to trigger a single execution of the rule          # the target is a placeholder to trigger a single execution of the rule
3385          touch \$@          touch \$@
3386  # put this so make knows about the postprocessing output  # put this so make knows about the postprocessing output
3387  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3388    
3389  # link the XAIF schema files  # link the XAIF schema files
# Line 3273  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f Line 3392  OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f
3392    
3393  # link the support files:  # link the support files:
3394  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):  \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3395          \$(LN) ../OAD_support/\$@ .          \$(LN) \${OADTOOLS}/\$@ .
3396    
3397  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)  AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3398    
# Line 3320  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3439  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3439  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3440    
3441  # Create special header files  # Create special header files
3442  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3443  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3444      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3445  else  else
# Line 3334  else Line 3453  else
3453      fi      fi
3454  fi  fi
3455  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3456      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3457  fi  fi
3458    
3459  #  Write the "state" for future records  #  Write the "state" for future records

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