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revision 1.155 by dfer, Thu Oct 5 15:02:15 2006 UTC revision 1.251 by jmc, Sun Jul 21 23:21:36 2013 UTC
# Line 1  Line 1 
1  #! /usr/bin/env bash  #! /usr/bin/env bash
2  #  #
3  # $Header$  # $Header$
4    # $Name$
5  #  #
6  # Makefile generator for MITgcm UV codes  # Makefile generator for MITgcm UV codes
7  #   created  by cnh 03/98  #   created  by cnh 03/98
# Line 8  Line 9 
9  #   modified by aja 01/00  #   modified by aja 01/00
10  #   rewritten in bash by eh3 08/03  #   rewritten in bash by eh3 08/03
11    
12    #  Explain usage
13    usage()  {
14    cat <<EOF
15    
16    Usage: "$0" [OPTIONS]
17      where [OPTIONS] can be:
18    
19        -help | --help | -h | --h
20              Print this help message and exit.
21    
22        -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME
23          -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME
24              Use "NAME" as the adoptfile.  By default, the file at
25              "tools/adjoint_options/adjoint_default" will be used.
26    
27        -nooptfile | --nooptfile
28          -optfile NAME | --optfile NAME | -of NAME | --of NAME
29          -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME
30              Use "NAME" as the optfile.  By default, an attempt will be
31              made to find an appropriate "standard" optfile in the
32              tools/build_options/ directory.
33    
34        -pdepend NAME | --pdepend NAME
35          -pdepend=NAME | --pdepend=NAME
36              Get package dependency information from "NAME".
37    
38        -pgroups NAME | --pgroups NAME
39          -pgroups=NAME | --pgroups=NAME
40              Get the package groups information from "NAME".
41    
42        -bash NAME
43              Explicitly specify the Bourne or BASH shell to use
44    
45        -make NAME | -m NAME
46          --make=NAME | -m=NAME
47              Use "NAME" for the MAKE program. The default is "make" but
48              many platforms, "gmake" is the preferred choice.
49    
50        -makefile NAME | -mf NAME
51          --makefile=NAME | -mf=NAME
52              Call the makefile "NAME".  The default is "Makefile".
53    
54        -makedepend NAME | -md NAME
55          --makedepend=NAME | -md=NAME
56              Use "NAME" for the MAKEDEPEND program.
57    
58        -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME
59          -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME
60              Specify the location of the MITgcm ROOTDIR as "NAME".
61              By default, genamke will try to find the location by
62              looking in parent directories (up to the 5th parent).
63    
64        -mods NAME | --mods NAME | -mo NAME | --mo NAME
65          -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME
66              Here, "NAME" specifies a list of directories that are
67              used for additional source code.  Files found in the
68              "mods list" are given preference over files of the same
69              name found elsewhere.
70    
71        -disable NAME | --disable NAME
72          -disable=NAME | --disable=NAME
73              Here "NAME" specifies a list of packages that we don't
74              want to use.  If this violates package dependencies,
75              genamke will exit with an error message.
76    
77        -enable NAME | --enable NAME
78          -enable=NAME | --enable=NAME
79              Here "NAME" specifies a list of packages that we wish
80              to specifically enable.  If this violates package
81              dependencies, genamke will exit with an error message.
82    
83        -standarddirs NAME | --standarddirs NAME
84          -standarddirs=NAME | --standarddirs=NAME
85              Here, "NAME" specifies a list of directories to be
86              used as the "standard" code.
87    
88        -fortran NAME | --fortran NAME | -fc NAME | --fc NAME
89          -fc=NAME | --fc=NAME
90              Use "NAME" as the fortran compiler.  By default, genmake
91              will search for a working compiler by trying a list of
92              "usual suspects" such as g77, f77, etc.
93    
94        -cc NAME | --cc NAME | -cc=NAME | --cc=NAME
95              Use "NAME" as the C compiler.  By default, genmake
96              will search for a working compiler by trying a list of
97              "usual suspects" such as gcc, c89, cc, etc.
98    
99        -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4
100              Use "real*4" type for _RS variable (#undef REAL4_IS_SLOW)
101              *only* works if CPP_EEOPTIONS.h allows this.
102    
103        -ignoretime | -ignore_time | --ignoretime | --ignore_time
104              Ignore all the "wall clock" routines entirely.  This will
105              not in any way hurt the model results -- it simply means
106              that the code that checks how long the model spends in
107              various routines will give junk values.
108    
109        -ts | --ts
110              Produce timing information per timestep
111        -papis | --papis
112              Produce summary MFlop/s (and IPC) with PAPI per timestep
113        -pcls | --pcls
114              Produce summary MFlop/s etc. with PCL per timestep
115        -foolad | --foolad
116              Fool the AD code generator
117        -papi | --papi
118              Performance analysis with PAPI
119        -pcl | --pcl
120              Performance analysis with PCL
121        -hpmt | --hpmt
122              Performance analysis with the HPM Toolkit
123    
124        -ieee | --ieee
125              use IEEE numerics.  Note that this option *only* works
126              if it is supported by the OPTFILE that is being used.
127        -devel | --devel
128              Add additional warning and debugging flags for development
129              (if supported by the OPTFILE); also switch to IEEE numerics.
130        -gsl | --gsl
131              Use GSL to control floating point rounding and precision
132    
133        -mpi | --mpi
134              Include MPI header files and link to MPI libraries
135        -mpi=PATH | --mpi=PATH
136              Include MPI header files and link to MPI libraries using MPI_ROOT
137              set to PATH. i.e. Include files from \$PATH/include, link to libraries
138              from \$PATH/lib and use binaries from \$PATH/bin.
139    
140        -omp | --omp
141              Activate OpenMP code + use Compiler option OMPFLAG
142        -omp=OMPFLAG | --omp=OMPFLAG
143              Activate OpenMP code + use Compiler option OMPFLAG
144    
145        -es | --es | -embed-source | --embed-source
146              Embed a tarball containing the full source code
147              (including the Makefile, etc.) used to build the
148              executable [off by default]
149    
150        -ds | --ds
151              Report genmake internal variables status (DUMPSTATE)
152              to file "genmake_state" (for debug purpose)
153    
154      While it is most often a single word, the "NAME" variables specified
155      above can in many cases be a space-delimited string such as:
156    
157        --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'
158        -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'
159        -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'
160    
161      which, depending upon your shell, may need to be single-quoted.
162    
163      For more detailed genmake documentation, please see:
164    
165        http://mitgcm.org/public/devel_HOWTO/
166    
167    EOF
168    
169        exit 1
170    }
171    
172  # Search for particular CPP #cmds associated with packages  # Search for particular CPP #cmds associated with packages
173  # usage: test_for_package_in_cpp_options CPP_file package_name  # usage: test_for_package_in_cpp_options CPP_file package_name
174  test_for_package_in_cpp_options() {  test_for_package_in_cpp_options() {
175      cpp_options=$1      cpp_options=$1
176      pkg=$2      pkg=$2
177      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_$pkg\>"
178      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_$pkg\>"
179      test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<DISABLE_$pkg\>"
180      test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<DISABLE_$pkg\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*DISABLE_$pkg$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*DISABLE_$pkg$"  
181  }  }
182    
183  # Search for particular CPP #cmds associated with MPI  # Search for particular CPP #cmds associated with MPI
184  # usage: test_for_mpi_in_cpp_eeoptions CPP_file  # usage: test_for_mpi_in_cpp_eeoptions CPP_file
185  test_for_mpi_in_cpp_eeoptions() {  test_for_mpi_in_cpp_eeoptions() {
186      cpp_options=$1      cpp_options=$1
187      test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *define *\<ALLOW_USE_MPI\>"
188      test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI[ ]"      test_for_string_in_file $cpp_options "^ *# *undef *\<ALLOW_USE_MPI\>"
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI[ ]"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALLOW_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#define.*ALWAYS_USE_MPI$"  
     test_for_string_in_file $cpp_options "^[ ]*#undef.*ALWAYS_USE_MPI$"  
189  }  }
190    
191  # Search for particular string in a file. Return 1 if detected, 0 if not  # Search for particular string in a file. Return 1 if detected, 0 if not
# Line 42  test_for_mpi_in_cpp_eeoptions() { Line 193  test_for_mpi_in_cpp_eeoptions() {
193  test_for_string_in_file() {  test_for_string_in_file() {
194      file=$1      file=$1
195      strng=$2      strng=$2
196      grep -i "$strng" $file > /dev/null 2>&1      grep "$strng" $file > /dev/null 2>&1
197      RETVAL=$?      RETVAL=$?
198      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
199          printf "Error: In $file there is an illegal line: "          printf "Error: In $file there is an illegal line: "
200          grep -i "$strng" $file          grep -i "$strng" $file
201          exit 99          exit 99
202      fi      fi
203      return 0      return 0
# Line 56  test_for_string_in_file() { Line 207  test_for_string_in_file() {
207  # the package list.  # the package list.
208  expand_pkg_groups() {  expand_pkg_groups() {
209      new_packages=      new_packages=
     PKG_GROUPS=$ROOTDIR"/pkg/pkg_groups"  
210      if test -r $PKG_GROUPS ; then      if test -r $PKG_GROUPS ; then
211          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp          cat $PKG_GROUPS | sed -e 's/#.*$//g' | sed -e 's/:/ : /g' > ./p1.tmp
212          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp          cat ./p1.tmp | $AWK '(NF>2 && $2==":"){ print $0 }' > ./p2.tmp
# Line 67  expand_pkg_groups() { Line 217  expand_pkg_groups() {
217              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
218                  matched=1                  matched=1
219                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`                  replace=`echo $line | $AWK '{ $1=""; $2=""; print $0 }'`
220                  echo "    replacing \"$i\" with: $replace"                  echo "    replacing \"$i\" with:$replace"
221                  new_packages="$new_packages $replace"                  new_packages="$new_packages $replace"
222              else              else
223                  new_packages="$new_packages $i"                  new_packages="$new_packages $i"
# Line 110  EOF Line 260  EOF
260              check_for_broken_Ff              check_for_broken_Ff
261          else          else
262              cat <<EOF 2>&1              cat <<EOF 2>&1
263  ERROR: Your file system cannot distinguish between *.F and *.f files  ERROR: Your file system cannot distinguish between *.F and *.f files
264    (fails the "cp" test) and this program cannot find a suitable    (fails the "cp" test) and this program cannot find a suitable
265    replacement extension.  Please try a different build environment or    replacement extension.  Please try a different build environment or
266    contact the <MITgcm-support@mitgcm.org> list for help.    contact the <MITgcm-support@mitgcm.org> list for help.
267    
268  EOF  EOF
# Line 137  EOF Line 287  EOF
287  .F.$tfs:  .F.$tfs:
288          $LN \$< \$@          $LN \$< \$@
289  EOF  EOF
290      $MAKE "genmake_hello."$tfs > /dev/null 2>&1      $MAKE -f $MAKEFILE "genmake_hello."$tfs > /dev/null 2>&1
291      RETVAL=$?      RETVAL=$?
292      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then      if test "x$RETVAL" != x0 -o ! -f "genmake_hello."$tfs ; then
293          if test "x$FS" = x ; then          if test "x$FS" = x ; then
# Line 145  EOF Line 295  EOF
295              FS90='fr9'              FS90='fr9'
296              check_for_broken_Ff              check_for_broken_Ff
297          else          else
298              cat <<EOF 2>&1              echo "ERROR: test: '$MAKE -f $MAKEFILE genmake_hello.$tfs' Failed"
299  ERROR: Your file system cannot distinguish between *.F and *.f files              echo "       see simple makefile: '$MAKEFILE' (left here)"
300    (fails the "make/ln" test) and this program cannot find a suitable              echo "  Please check (1) your '$MAKE' command, (2) your '$LN' command"
301    replacement extension.  Please try a different build environment or              echo "           and (3) the allowed sufix '.F' and '.$tfs' in makefile"
302    contact the <MITgcm-support@mitgcm.org> list for help.              echo "  or contact the <MITgcm-support@mitgcm.org> list for help."
303                echo ""
 EOF  
304              exit -1              exit -1
305              return              return
306          fi          fi
# Line 165  EOF Line 314  EOF
314      return      return
315  }  }
316    
   
317  look_for_makedepend()  {  look_for_makedepend()  {
318    
319      #  The "original" makedepend is part of the Imake system that is      #  The "original" makedepend is part of the Imake system that is
# Line 176  look_for_makedepend()  { Line 324  look_for_makedepend()  {
324      #      #
325      #    1) a makedepend implementation shipped with the cyrus-imapd      #    1) a makedepend implementation shipped with the cyrus-imapd
326      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/      #       package:  ftp://ftp.andrew.cmu.edu/pub/cyrus-mail/
327      #      #    2) a local tools/xmakedepend shell script
     #    2) a known-buggy xmakedpend shell script  
328      #      #
329      #  So the choices are, in order:      #  So the choices are, in order:
     #  
330      #    1) use the user-specified program      #    1) use the user-specified program
331      #    2) use a system-wide default      #    2) use the local xmakedepend script (get all dependencies, but slower)
332      #    3) locally build and use the cyrus implementation      #    3) use a system-wide default
333      #    4) fall back to the buggy local xmakedpend script      #    4) locally build and use the cyrus makedepend
334        #             (faster, but can miss some dependencies)
335      #      #
336        echo >> $LOGFILE
337        echo "running: look_for_makedepend()" >> $LOGFILE
338        if test "x${MAKEDEPEND}" != x ; then
339            echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1
340            RETVAL=$?
341            if test x"$RETVAL" = x0 ; then
342                build_cyrus_makedepend
343                RETVAL=$?
344                if test "x$RETVAL" != x0 ; then
345                    echo "WARNING: unable to build cyrus-makedepend. Try other 'makedepend'"
346                    MAKEDEPEND=
347                fi
348            else
349                echo "${MAKEDEPEND}" | grep 'tools.xmakedepend' > /dev/null 2>&1
350                RETVAL=$?
351                if test "x$RETVAL" = x0 ; then
352                    MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
353                fi
354                echo " -->     MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
355            fi
356        fi
357      if test "x${MAKEDEPEND}" = x ; then      if test "x${MAKEDEPEND}" = x ; then
         which makedepend > /dev/null 2>&1  
         RV0=$?  
358          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"          test -f $MAKEFILE  &&  mv -f $MAKEFILE $MAKEFILE".tst"
359          #  echo 'MAKEFILE="'$MAKEFILE'"'          #  echo 'MAKEFILE="'$MAKEFILE'"'
360          cat <<EOF >> $MAKEFILE          cat <<EOF >> $MAKEFILE
361  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"  #   THIS IS A TEST MAKEFILE GENERATED BY "genmake2"
362  #  #
363  #   Some "makedepend" implementations will die if they cannot  #   Some "makedepend" implementations will die if they cannot
364  #   find a Makefile -- so this file is here to gives them an  #   find a Makefile -- so this file is here to gives them an
365  #   empty one to find and parse.  #   empty one to find and parse.
366  EOF  EOF
367          cat <<EOF >> genmake_tc.f          cat <<EOF >> genmake_tc.f
# Line 204  EOF Line 370  EOF
370        stop        stop
371        end        end
372  EOF  EOF
373          makedepend genmake_tc.f > /dev/null 2>&1          $ROOTDIR/tools/xmakedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
374          RV1=$?          RV1=$?
375            which makedepend > /dev/null 2>&1
376            RV2=$?
377            if test "x${RV2}" = x0 ; then
378                makedepend -f $MAKEFILE genmake_tc.f > /dev/null 2>&1
379                RV3=$? ; loc_msg='not working.'
380            else RV3=$RV2 ; loc_msg='not found.'
381            fi
382          test -f $MAKEFILE  &&  rm -f $MAKEFILE          test -f $MAKEFILE  &&  rm -f $MAKEFILE
383          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE          test -f $MAKEFILE".tst"  &&  mv -f $MAKEFILE".tst" $MAKEFILE
384          if test "x${RV0}${RV1}" = x00 ; then          echo "  check makedepend (local: $RV1, system: $RV2, $RV3)"
385            if test "x${RV1}" = x0 ; then
386                MAKEDEPEND='$(TOOLSDIR)/xmakedepend'
387                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
388            elif test "x${RV3}" = x0 ; then
389                echo "    local tools/xmakedepend not working. Use system-default makedepend"
390              MAKEDEPEND=makedepend              MAKEDEPEND=makedepend
391                echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
392          else          else
393              echo "    a system-default makedepend was not found."              echo "    local tools/xmakedepend not working; system-default makedepend $loc_msg"
394                            echo -n "    Try to build cyrus-makedepend ..."
395              #  Try to build the cyrus implementation              #  Try to build the cyrus implementation
396              build_cyrus_makedepend              build_cyrus_makedepend
397              RETVAL=$?              RETVAL=$?
398              if test "x$RETVAL" != x0 ; then              if test "x$RETVAL" = x0 ; then
399                  MAKEDEPEND='$(TOOLSDIR)/xmakedepend'                  echo "  Works"
400                else
401                    echo "  Fails" ; echo "" >> $LOGFILE
402                    echo "ERROR: no working makedepend found ; look_for_makedepend FAILED" | tee -a $LOGFILE
403                    echo ""
404                    exit -1
405                    return
406              fi              fi
             rm -f ./genmake_cy_md  
         fi  
     else  
         #  echo "MAKEDEPEND=${MAKEDEPEND}"  
         echo "${MAKEDEPEND}" | grep -i cyrus > /dev/null 2>&1  
         RETVAL=$?  
         if test x"$RETVAL" = x0 ; then  
             build_cyrus_makedepend  
407          fi          fi
408      fi      fi
409  }  }
410    
   
411  build_cyrus_makedepend()  {  build_cyrus_makedepend()  {
412        echo >> $LOGFILE
413        echo "running: build_cyrus_makedepend()" >> $LOGFILE
414      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
415      (      (
416          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \          cd $ROOTDIR/tools/cyrus-imapd-makedepend  \
417              &&  ./configure > /dev/null 2>&1  \              &&  ./configure > /dev/null 2>&1  \
418              &&  make > /dev/null 2>&1              &&  $MAKE > /dev/null 2>&1
419          if test -x ./makedepend.exe ; then          if test -x ./makedepend.exe ; then
420              $LN ./makedepend.exe ./makedepend              $LN ./makedepend.exe ./makedepend
421          fi          fi
# Line 249  build_cyrus_makedepend()  { Line 427  build_cyrus_makedepend()  {
427      rm -f ./genmake_cy_md      rm -f ./genmake_cy_md
428      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
429          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'          MAKEDEPEND='$(TOOLSDIR)/cyrus-imapd-makedepend/makedepend'
430            echo " --> set MAKEDEPEND=${MAKEDEPEND}" >> $LOGFILE
431          return 0          return 0
432      else      else
433          echo "WARNING: unable to build cyrus-imapd-makedepend"          echo "WARNING: fail to build cyrus-imapd-makedepend" >> $LOGFILE
434          return 1          return 1
435      fi      fi
436  }  }
437    
   
438  build_embed_encode()  build_embed_encode()
439  {  {
440      printf "  building the embed-encode utility...  "      printf "  building the embed-encode utility...  "
441      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then      if test ! -e "$ROOTDIR/tools/embed_encode/encode_files" ; then
442          if test ! -d "$ROOTDIR/tools/embed_encode" ; then          if test ! -d "$ROOTDIR/tools/embed_encode" ; then
443              echo              echo
444              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""              echo "    Error: can't locate \"$ROOTDIR/tools/embed_encode\""
445              echo              echo
446              EMBED_SRC=f              EMBED_SRC=f
447              return 1              return 1
448          fi          fi
449          clist="cc gcc c89 $CC"          clist="cc gcc c89 $CC"
450          for ic in $clist ; do          for ic in $clist ; do
451              comm="$ic -o encode_files encode_files.c"              comm="$ic -o encode_files encode_files.c"
452              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1              ( cd $ROOTDIR/tools/embed_encode && $comm ) > /dev/null 2>&1
453              RETVAL=$?              RETVAL=$?
454              if test "x$RETVAL" = x0 ; then              if test "x$RETVAL" = x0 ; then
455                  echo "OK"                  echo "OK"
                 DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
456                  return 0                  return 0
457              fi              fi
458          done          done
# Line 287  build_embed_encode() Line 464  build_embed_encode()
464          return 1          return 1
465      fi      fi
466      echo "OK"      echo "OK"
     DEFINES="$DEFINES -DHAVE_EMBED_SRC"  
467  }  }
468    
469    #  look for possible C compilers
470  # Guess possible config options for this host  look_for_C_compilers() {
471  find_possible_configs()  {      echo >> $LOGFILE
472        echo "running: look_for_C_compilers()" >> $LOGFILE
473      tmp1=`uname`"_"`uname -m`      rm -f ./genmake_hello.c  ./genmake_hello
474      tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`      cat >> genmake_hello.c << EOF
     tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`  
     tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`  
     tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`  
     tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`  
     PLATFORM=$tmp3  
     echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32  
     OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`  
     echo "  The platform appears to be:  $PLATFORM"  
       
     echo "test" > test  
     ln -s ./test link  
     RETVAL=$?  
     if test "x${RETVAL}" = x0 ; then  
         LN="ln -s"  
     else  
         echo "Error: \"ln -s\" does not appear to work on this system!"  
         echo "  For help, please contact <MITgcm-support@mitgcm.org>."  
         exit 1  
     fi  
     rm -f test link  
   
     if test "x$CPP" = x ; then  
         CPP="cpp -traditional -P"  
     fi  
   
     look_for_makedepend  
   
     #================================================================  
     #  look for possible C compilers  
     tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc"  
     p_CC=  
     for c in $tmp ; do  
         rm -f ./genmake_hello.c  ./genmake_hello  
         cat >> genmake_hello.c << EOF  
475  #include <stdio.h>  #include <stdio.h>
476  int main(int argc, char **argv) {  int main(int argc, char **argv) {
477    printf("Hello!\n");    printf("Hello!\n");
478    return 0;    return 0;
479  }  }
480  EOF  EOF
481          $c -o genmake_hello genmake_hello.c > /dev/null 2>&1      tmp="$MITGCM_CC $CC gcc c89 cc c99 mpicc icc"
482        p_CC=
483        for c in $tmp ; do
484            COMM="$c $CFLAGS -o genmake_hello genmake_hello.c"
485            echo $COMM >> $LOGFILE
486            $COMM >> $LOGFILE 2>&1
487          RETVAL=$?          RETVAL=$?
488          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
489                echo " $c test successful" >> $LOGFILE
490              p_CC="$p_CC $c"              p_CC="$p_CC $c"
491          fi          fi
492      done      done
# Line 354  Error: No C compilers were found in your Line 502  Error: No C compilers were found in your
502  EOF  EOF
503          exit 1          exit 1
504      else      else
505          echo "  The possible C compilers found in your path are:"          echo "  The possible C compilers found in your path are: $p_CC" | tee -a $LOGFILE
         echo "   "$p_CC  
506          if test "x$CC" = x ; then          if test "x$CC" = x ; then
507              CC=`echo $p_CC | $AWK '{print $1}'`              CC=`echo $p_CC | $AWK '{print $1}'`
508              echo "  Setting C compiler to: "$CC              echo "  Setting C compiler to: "$CC
509          fi          fi
510      fi      fi
511        echo " --> set CC='$CC'" >> $LOGFILE
512    }
513    
514    # Guess possible config options for this host
515    find_possible_optfile()  {
516    
517        echo >> $LOGFILE
518        echo "running: find_possible_optfile()" >> $LOGFILE
519        tmp1=`uname`"_"`uname -m`
520        tmp2=`echo $tmp1 | sed -e 'y/ABCDEFGHIJKLMNOPQRSTUVWXYZ/abcdefghijklmnopqrstuvwxyz/'`
521        tmp3=`echo $tmp2 | sed -e 's/power macintosh/ppc/'`
522        tmp1=`echo $tmp3 | sed -e 's|x86_64|amd64|'`
523        tmp2=`echo $tmp1 | sed -e 's/i[3-6]86/ia32/' | sed -e 's/athlon/ia32/'`
524        tmp3=`echo $tmp2 | sed -e 's/cray sv1/craysv1/'`
525        PLATFORM=$tmp3
526        echo $PLATFORM | grep cygwin > /dev/null 2>&1  &&  PLATFORM=cygwin_ia32
527        OFLIST=`(cd $ROOTDIR/tools/build_options; ls | grep "^$PLATFORM")`
528        echo "  The platform appears to be:  $PLATFORM" | tee -a $LOGFILE
529    
530      #================================================================      #================================================================
531      #  look for possible FORTRAN compilers      #  look for possible FORTRAN compilers
532      tmp="$MITGCM_FC $FC efc g77 f77 pgf77 pgf95 ifc f90 f95 mpif77 mpf77 mpxlf95 gfortran"      echo "  look for possible FORTRAN compilers" >> $LOGFILE
533        tmp="$MITGCM_FC $FC efc gfortran g77 f77 pgf77 pgf95 ifc ifort f90 f95 mpif77 mpf77 mpxlf95 g95"
534      p_FC=      p_FC=
535      for c in $tmp ; do      rm -f ./genmake_hello.f
536          rm -f ./hello.f ./hello      cat >> genmake_hello.f <<EOF
         cat >> hello.f <<EOF  
537        program hello        program hello
538        do i=1,3        do i=1,3
539          print *, 'hello world : ', i          print *, 'hello world : ', i
540        enddo        enddo
541        end        end
542  EOF  EOF
543          $c -o hello hello.f > /dev/null 2>&1      for f in $tmp ; do
544            COMM="$f -o genmake_hello genmake_hello.f"
545            echo $COMM >> $LOGFILE
546            $COMM >> $LOGFILE 2>&1
547          RETVAL=$?          RETVAL=$?
548          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
549              p_FC="$p_FC $c"              echo " $f test successful" >> $LOGFILE
550                p_FC="$p_FC $f"
551          fi          fi
552      done      done
553      rm -f ./hello.f ./hello      rm -f ./genmake_hello.f ./genmake_hello
554      if test "x${p_FC}" = x ; then      if test "x${p_FC}" = x ; then
555          cat 1>&2 <<EOF          cat 1>&2 <<EOF
556    
# Line 394  Error: No Fortran compilers were found i Line 563  Error: No Fortran compilers were found i
563  EOF  EOF
564          exit 1          exit 1
565      else      else
566          echo "  The possible FORTRAN compilers found in your path are:"          echo "  The possible FORTRAN compilers found in your path are: $p_FC" | tee -a $LOGFILE
         echo "   "$p_FC  
567      fi      fi
568    
569      #  Use the first of the compilers found in the current PATH      #  Use the first of the compilers found in the current PATH
# Line 404  EOF Line 572  EOF
572          for i in $p_FC ; do          for i in $p_FC ; do
573              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i              OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i
574              if test -r $OPTFILE ; then              if test -r $OPTFILE ; then
575                  echo "  Setting OPTFILE to: "$OPTFILE                  echo "  Setting OPTFILE to: "$OPTFILE | tee -a $LOGFILE
576                  break                  break
577              fi              fi
578          done          done
# Line 413  EOF Line 581  EOF
581      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
582          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC          OPTFILE=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$FC
583          if test ! -r $OPTFILE ; then          if test ! -r $OPTFILE ; then
584               echo "  I looked for the file "$OPTFILE" but did not find it"               echo "  I looked for the file "$OPTFILE" but did not find it"
585          fi          fi
586      fi      fi
587  #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #   for i in $p_FC ; do  
 #p_OF=$ROOTDIR"/tools/build_options/"$PLATFORM"_"$i  
 #if test -r $p_OF ; then  
 #    OPTFILE=$p_OF  
 #    echo "  The options file:  $p_OF"  
 #    echo "    appears to match so we'll use it."  
 #    break  
 #fi  
 #   done  
588      if test "x$OPTFILE" = x ; then      if test "x$OPTFILE" = x ; then
589          cat 1>&2 <<EOF          cat 1>&2 <<EOF
590    
# Line 442  Error: No options file was found in:  $R Line 600  Error: No options file was found in:  $R
600  EOF  EOF
601          exit 1          exit 1
602      fi      fi
603        }
 #     # look for possible MPI libraries  
 #     mpi_libs=  
 #     mpi_fort=`which mpif77 2>/dev/null`  
 #     RETVAL=$?  
 #     if test "x${RETVAL}" = x0 ; then  
 #       cat >>test.f <<EOF  
 #       PROGRAM HELLO  
 #       DO 10, I=1,10  
 #       PRINT *,'Hello World'  
 #    10 CONTINUE  
 #       STOP  
 #       END  
 # EOF  
 #       eval "$mpi_fort -showme test.f > out"  
 #       RETVAL=$?  
 #       if test "x${RETVAL}" = x0 ; then  
 #           a=`cat out`  
 #           for i in $a ; do  
 #               case $i in  
 #                   -*)  
 #                       mpi_libs="$mpi_libs $i" ;;  
 #               esac  
 #           done  
 #           echo "The MPI libs appear to be:"  
 #           echo "  "$mpi_libs  
 #       fi  
 #       rm -f test.f out  
 #     fi  
604    
605    #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
606    #  checking for additional included headers (in case of chain of included header)
607    mpi_headers_do_local_copy() {
608    
609        dBug=0
610        #----- check for additional headers (chain of included headers)
611        listIni=$MPI_HEADER_FILES
612        echo $listIni | grep "\<mpif.h\>" > /dev/null 2>&1
613        outp=$?
614        #- always check mpif.h (the only mpi-header included in standard MITgcm code)
615        if test $outp != 0 ; then listIni="mpif.h $listIni" ; fi
616        if test $dBug = 1 ; then echo "listIni='$listIni'" ; fi
617        doCheck=1 ; list2copy='' ; list2check=$listIni
618        while test $doCheck = 1 ; do
619            newList=''
620            for i in $list2check ; do
621             if test -f $MPIINCLUDEDIR/$i ; then
622                newInc=`grep '^ *include ' $MPIINCLUDEDIR/$i | \
623                    sed -e 's/^ *include //' -e 's/\!.*$//' -e "s/'//g"  -e 's/\"//g'`
624               if test $dBug = 1 ; then echo -n "checking $i : newInc='$newInc'" ; fi
625               for j in $newInc ; do
626                 echo $listIni $list2copy $newList | grep "\<$j\>" > /dev/null 2>&1
627                 outp=$?
628                 if test $outp != 0 ; then
629                    if test $dBug = 1 ; then echo -n " ; adding $j" ; fi
630                    newList="$newList $j"
631                 fi
632               done
633               if test $dBug = 1 ; then echo "" ; fi
634             fi
635            done
636            if test "x$newList" = x ; then doCheck=0
637            else list2check=$newList ; list2copy="$list2copy $newList"
638            fi
639        done
640        list2copy="$MPI_HEADER_FILES $list2copy"
641        if test $dBug = 1 ; then echo "list2copy='$list2copy'" ; fi
642        #----- make local copy and update LOCAL_MPI_HEADERS (if not already set)
643        mkListInc=0
644        for i in $list2copy ; do
645            if test -f $MPIINCLUDEDIR/$i ; then
646                cp -p $MPIINCLUDEDIR/$i ./mpi_headers
647                if test $i = 'mpif.h' ; then
648                    perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h
649                fi
650                if test $mkListInc = 1 ; then
651                    LOCAL_MPI_HEADERS="$LOCAL_MPI_HEADERS ./mpi_headers/$i"
652                fi
653                if test "x$LOCAL_MPI_HEADERS" = x ; then
654                    LOCAL_MPI_HEADERS="./mpi_headers/$i" ; mkListInc=1
655                fi
656            fi
657        done
658  }  }
659    
660  #  Parse the package dependency information  #  Parse the package dependency information
# Line 480  get_pdepend_list()  { Line 663  get_pdepend_list()  {
663      #  strip the comments and then convert the dependency file into      #  strip the comments and then convert the dependency file into
664      #  two arrays: PNAME, DNAME      #  two arrays: PNAME, DNAME
665      cat $1 | sed -e 's/#.*$//g' \      cat $1 | sed -e 's/#.*$//g' \
666          | $AWK 'BEGIN{nn=0;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME["nn"]="$1"\nDNAME["nn"]="$i} }' \          | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \
667          > ./.pd_tmp          > ./.pd_tmp
668        RETVAL=$?
669        if test ! "x${RETVAL}" = x0 ; then
670          echo "Error: unable to parse package dependencies -- please check PKG_DEPEND=\"$1\""
671          exit 1
672        fi
673      . ./.pd_tmp      . ./.pd_tmp
674      rm -f ./.pd_tmp      rm -f ./.pd_tmp
   
     printf "PNAME = "${}  
 }  
   
   
 #  Explain usage  
 usage()  {  
 cat <<EOF  
   
 Usage: "$0" [OPTIONS]  
   where [OPTIONS] can be:  
   
     -help | --help | -h | --h  
           Print this help message and exit.  
   
     -adoptfile NAME | --adoptfile NAME | -adof NAME | --adof NAME  
       -adoptfile=NAME | --adoptfile=NAME | -adof=NAME | --adof=NAME  
           Use "NAME" as the adoptfile.  By default, the file at  
           "tools/adjoint_options/adjoint_default" will be used.  
   
     -nooptfile | --nooptfile  
       -optfile NAME | --optfile NAME | -of NAME | --of NAME  
       -optfile=NAME | --optfile=NAME | -of=NAME | --of=NAME  
           Use "NAME" as the optfile.  By default, an attempt will be  
           made to find an appropriate "standard" optfile in the  
           tools/build_options/ directory.  
   
     -pdepend NAME | --pdepend NAME  
       -pdepend=NAME | --pdepend=NAME  
           Get package dependency information from "NAME".  
   
     -pdefault NAME | --pdefault NAME  
       -pdefault=NAME | --pdefault=NAME  
           Get the default package list from "NAME".  
   
     -make NAME | -m NAME  
       --make=NAME | -m=NAME  
           Use "NAME" for the MAKE program. The default is "make" but  
           many platforms, "gmake" is the preferred choice.  
   
     -makefile NAME | -mf NAME  
       --makefile=NAME | -mf=NAME  
           Call the makefile "NAME".  The default is "Makefile".  
   
     -makedepend NAME | -md NAME  
       --makedepend=NAME | -md=NAME  
           Use "NAME" for the MAKEDEPEND program.  
   
     -rootdir NAME | --rootdir NAME | -rd NAME | --rd NAME  
       -rootdir=NAME | --rootdir=NAME | -rd=NAME | --rd=NAME  
           Specify the location of the MITgcm ROOTDIR as "NAME".  
           By default, genamke will try to find the location by  
           looking in parent directories (up to the 5th parent).  
   
     -mods NAME | --mods NAME | -mo NAME | --mo NAME  
       -mods=NAME | --mods=NAME | -mo=NAME | --mo=NAME  
           Here, "NAME" specifies a list of directories that are  
           used for additional source code.  Files found in the  
           "mods list" are given preference over files of the same  
           name found elsewhere.  
   
     -disable NAME | --disable NAME  
       -disable=NAME | --disable=NAME  
           Here "NAME" specifies a list of packages that we don't  
           want to use.  If this violates package dependencies,  
           genamke will exit with an error message.  
   
     -enable NAME | --enable NAME  
       -enable=NAME | --enable=NAME  
           Here "NAME" specifies a list of packages that we wish  
           to specifically enable.  If this violates package  
           dependencies, genamke will exit with an error message.  
   
     -standarddirs NAME | --standarddirs NAME  
       -standarddirs=NAME | --standarddirs=NAME  
           Here, "NAME" specifies a list of directories to be  
           used as the "standard" code.  
   
     -fortran NAME | --fortran NAME | -fc NAME | --fc NAME  
       -fc=NAME | --fc=NAME  
           Use "NAME" as the fortran compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as g77, f77, etc.  
   
     -cc NAME | --cc NAME | -cc=NAME | --cc=NAME  
           Use "NAME" as the C compiler.  By default, genmake  
           will search for a working compiler by trying a list of  
           "usual suspects" such as gcc, c89, cc, etc.  
   
     -[no]ieee | --[no]ieee  
           Do or don't use IEEE numerics.  Note that this option  
           *only* works if it is supported by the OPTFILE that  
           is being used.  
   
     -ignoretime | -ignore_time | --ignoretime | --ignore_time  
           Ignore all the "wall clock" routines entirely.  This will  
           not in any way hurt the model results -- it simply means  
           that the code that checks how long the model spends in  
           various routines will give junk values.  
   
     -ts | --ts  
           Produce timing information per timestep  
     -papis | --papis  
           Produce summary MFlop/s (and IPC) with PAPI per timestep  
     -pcls | --pcls  
           Produce summary MFlop/s etc. with PCL per timestep  
     -foolad | --foolad  
           Fool the AD code generator  
     -papi | --papi  
           Performance analysis with PAPI  
     -pcl | --pcl  
           Performance analysis with PCL  
     -hpmt | --hpmt  
           Performance analysis with the HPM Toolkit  
   
     -gsl | --gsl  
           Use GSL to control floating point rounding and precision  
   
     -mpi | --mpi  
           Include MPI header files and link to MPI libraries  
     -mpi=PATH | --mpi=PATH  
           Include MPI header files and link to MPI libraries using MPI_ROOT  
           set to PATH. i.e. Include files from \$PATH/include, link to libraries  
           from \$PATH/lib and use binaries from \$PATH/bin.  
   
     -es | --es | -embed-source | --embed-source  
           Embed a tarball containing the full source code  
           (including the Makefile, etc.) used to build the  
           executable [off by default]  
   
     -bash NAME  
           Explicitly specify the Bourne or BASH shell to use  
   
   While it is most often a single word, the "NAME" variables specified  
   above can in many cases be a space-delimited string such as:  
   
     --enable pkg1   --enable 'pkg1 pkg2'   --enable 'pkg1 pkg2 pkg3'  
     -mods=dir1   -mods='dir1'   -mods='dir1 dir2 dir3'  
     -foptim='-Mvect=cachesize:512000,transform -xtypemap=real:64,double:64,integer:32'  
   
   which, depending upon your shell, may need to be single-quoted.  
   
   For more detailed genmake documentation, please see:  
   
     http://mitgcm.org/devel_HOWTO/  
   
 EOF  
   
     exit 1  
675  }  }
676    
677  #  Build a CPP macro to automate calling C routines from FORTRAN  #  Build a CPP macro to automate calling C routines from FORTRAN
# Line 640  get_fortran_c_namemangling()  { Line 679  get_fortran_c_namemangling()  {
679    
680      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""      #echo "FC_NAMEMANGLE = \"$FC_NAMEMANGLE\""
681      if test ! "x$FC_NAMEMANGLE" = x ; then      if test ! "x$FC_NAMEMANGLE" = x ; then
682          return 0          return 0
683      fi      fi
684        echo " running: get_fortran_c_namemangling()" >> $LOGFILE
685    
686      default_nm="#define FC_NAMEMANGLE(X) X ## _"      default_nm="#define FC_NAMEMANGLE(X) X ## _"
687        
688      cat > genmake_test.c <<EOF      cat > genmake_test.c <<EOF
689  void tcall( char * string ) { tsub( string ); }  void tcall( char * string ) { tsub( string ); }
690  EOF  EOF
691      $MAKE genmake_test.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_test.c"
692        echo ' '$COMM >> $LOGFILE
693        $COMM >> $LOGFILE 2>&1
694      RETVAL=$?      RETVAL=$?
695      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
696          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
697          cat <<EOF>> genmake_errors          cat <<EOF>> $LOGFILE
698    
699  WARNING: C test compile fails   WARNING: C test compile fails
700  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
701  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
702  EOF  EOF
703          return 1          return 1
704      fi      fi
# Line 664  EOF Line 706  EOF
706      RETVAL=$?      RETVAL=$?
707      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
708          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
709          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
710    
711  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
712  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
713  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here
714  EOF  EOF
715          return 1          return 1
716      fi      fi
# Line 678  EOF Line 720  EOF
720        call tsub( string )        call tsub( string )
721        end        end
722  EOF  EOF
723      $FC $FFLAGS -c genmake_tcomp.$FS >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -c genmake_tcomp.$FS"
724        echo ' '$COMM >> $LOGFILE
725        $COMM >> $LOGFILE 2>&1
726      RETVAL=$?      RETVAL=$?
727      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
728          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
729          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
730    
731  WARNING: FORTRAN test compile fails -- please see "genmake_errors"   WARNING: FORTRAN test compile fails -- please see '$LOGFILE'
732  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
733  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
734  EOF  EOF
735          return 1          return 1
736      fi      fi
# Line 694  EOF Line 738  EOF
738      RETVAL=$?      RETVAL=$?
739      if test "x$RETVAL" != x0 ; then      if test "x$RETVAL" != x0 ; then
740          FC_NAMEMANGLE=$default_nm          FC_NAMEMANGLE=$default_nm
741          cat <<EOF>> genmake_warnings          cat <<EOF>> $LOGFILE
742    
743  WARNING: The "nm" command failed.   WARNING: The "nm" command failed.
744  WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'   WARNING: We'll try to use: FC_NAMEMANGLE='$FC_NAMEMANGLE'
745  WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.   WARNING: Please contact <MITgcm-support@mitgcm.org> if you need help here.
746  EOF  EOF
747          return 1          return 1
748      fi      fi
# Line 724  EOF Line 768  EOF
768    
769      #  cleanup the testing files      #  cleanup the testing files
770      rm -f genmake_tcomp.* genmake_test.*      rm -f genmake_tcomp.* genmake_test.*
 }  
771    
772        echo " --> set FC_NAMEMANGLE='$FC_NAMEMANGLE'" >> $LOGFILE
773    }
774    
775  check_HAVE_CLOC()  {  check_HAVE_CLOC()  {
776        echo >> $LOGFILE
777        echo "running: check_HAVE_CLOC()" >> $LOGFILE
778      get_fortran_c_namemangling      get_fortran_c_namemangling
779      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
780  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 744  void FC_NAMEMANGLE(cloc) ( double *curti Line 791  void FC_NAMEMANGLE(cloc) ( double *curti
791   *curtim = *curtim/1.E6;   *curtim = *curtim/1.E6;
792  }  }
793  EOF  EOF
794      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
795        echo $COMM >> $LOGFILE
796        $COMM >> $LOGFILE 2>&1
797      RET_C=$?      RET_C=$?
798      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
799        program hello        program hello
# Line 754  EOF Line 803  EOF
803        print *," HELLO WORLD", wtime        print *," HELLO WORLD", wtime
804        end        end
805  EOF  EOF
806      $FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
807        echo $COMM >> $LOGFILE
808        $COMM >> $LOGFILE 2>&1
809      RET_F=$?      RET_F=$?
810      test -x ./genmake_tc  &&  ./genmake_tc >> genmake_warnings 2>&1      test -x ./genmake_tc  &&  ./genmake_tc >> $LOGFILE 2>&1
811      RETVAL=$?      RETVAL=$?
812      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
813          HAVE_CLOC=t          HAVE_CLOC=t
         DEFINES="$DEFINES -DHAVE_CLOC"  
814      fi      fi
815      rm -f genmake_tc*      rm -f genmake_tc*
816        echo " --> set HAVE_CLOC='$HAVE_CLOC'" >> $LOGFILE
817  }  }
818    
   
819  check_HAVE_SIGREG()  {  check_HAVE_SIGREG()  {
820      if test ! "x$HAVE_SIGREG" = x ; then      if test ! "x$HAVE_SIGREG" = x ; then
821          return          return
822      fi      fi
823        echo >> $LOGFILE
824        echo "running: check_HAVE_SIGREG()" >> $LOGFILE
825      get_fortran_c_namemangling      get_fortran_c_namemangling
826      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
827  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 801  void FC_NAMEMANGLE(sigreg) (int * aip) Line 853  void FC_NAMEMANGLE(sigreg) (int * aip)
853      return;      return;
854  }  }
855  EOF  EOF
856      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
857        echo $COMM >> $LOGFILE
858        $COMM >> $LOGFILE 2>&1
859      RET_C=$?      RET_C=$?
860      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
861        program hello        program hello
# Line 811  EOF Line 865  EOF
865        call sigreg(anint)        call sigreg(anint)
866        end        end
867  EOF  EOF
868      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SIGREG()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
869      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
870      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
871      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
872      RETVAL=$?      RETVAL=$?
873      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
874          HAVE_SIGREG=t          HAVE_SIGREG=t
         DEFINES="$DEFINES -DHAVE_SIGREG"  
875      fi      fi
876      rm -f genmake_tc*      rm -f genmake_tc*
877        echo " --> set HAVE_SIGREG='$HAVE_SIGREG'" >> $LOGFILE
878  }  }
879    
   
880  check_HAVE_SETRLSTK()  {  check_HAVE_SETRLSTK()  {
     if test "x$HAVE_SETRLSTK" = xt ; then  
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
         return  
     fi    
881      if test ! "x$HAVE_SETRLSTK" = x ; then      if test ! "x$HAVE_SETRLSTK" = x ; then
882          return          return
883      fi      fi
884        echo >> $LOGFILE
885        echo "running: check_HAVE_SETRLSTK()" >> $LOGFILE
886      get_fortran_c_namemangling      get_fortran_c_namemangling
887      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
888  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 849  void FC_NAMEMANGLE(setrlstk) () Line 898  void FC_NAMEMANGLE(setrlstk) ()
898      return;      return;
899  }  }
900  EOF  EOF
901      make genmake_tc_1.o >> genmake_warnings 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
902        echo $COMM >> $LOGFILE
903        $COMM >> $LOGFILE 2>&1
904      RET_C=$?      RET_C=$?
905      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
906        program hello        program hello
# Line 857  EOF Line 908  EOF
908        call setrlstk()        call setrlstk()
909        end        end
910  EOF  EOF
911      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_SETRLSTK()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
912      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
913      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
914      $COMM >> genmake_warnings 2>&1      $COMM >> $LOGFILE 2>&1
915      RETVAL=$?      RETVAL=$?
916      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
917          HAVE_SETRLSTK=t          HAVE_SETRLSTK=t
         DEFINES="$DEFINES -DHAVE_SETRLSTK"  
918      fi      fi
919      rm -f genmake_tc*      rm -f genmake_tc*
920        echo " --> set HAVE_SETRLSTK='$HAVE_SETRLSTK'" >> $LOGFILE
921  }  }
922    
   
923  check_HAVE_STAT()  {  check_HAVE_STAT()  {
924        echo >> $LOGFILE
925        echo "running: check_HAVE_STAT()" >> $LOGFILE
926      get_fortran_c_namemangling      get_fortran_c_namemangling
927      cat <<EOF > genmake_tc_1.c      cat <<EOF > genmake_tc_1.c
928  $FC_NAMEMANGLE  $FC_NAMEMANGLE
# Line 893  void FC_NAMEMANGLE(tfsize) ( int *nbyte Line 943  void FC_NAMEMANGLE(tfsize) ( int *nbyte
943          *nbyte = -1;          *nbyte = -1;
944  }  }
945  EOF  EOF
946      make genmake_tc_1.o >> genmake_tc.log 2>&1      COMM="$CC $CFLAGS -c genmake_tc_1.c"
947        echo $COMM >> $LOGFILE
948        $COMM >> genmake_tc.log 2>&1
949      RET_C=$?      RET_C=$?
950      cat <<EOF > genmake_tc_2.$FS      cat <<EOF > genmake_tc_2.$FS
951        program hello        program hello
# Line 902  EOF Line 954  EOF
954        print *," HELLO WORLD", nbyte        print *," HELLO WORLD", nbyte
955        end        end
956  EOF  EOF
957      echo >> genmake_warnings      cat genmake_tc_2.$FS >> $LOGFILE
     echo "running: check_HAVE_STAT()" >> genmake_warnings  
     cat genmake_tc_2.$FS >> genmake_warnings  
958      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"      COMM="$FC $FFLAGS -o genmake_tc genmake_tc_2.$FS genmake_tc_1.o"
959      echo $COMM >> genmake_warnings      echo $COMM >> $LOGFILE
960      $COMM >> genmake_tc.log 2>&1      $COMM >> genmake_tc.log 2>&1
961      RETVAL=$?      RETVAL=$?
962      if test "x$RETVAL" = x0 ; then      if test "x$RETVAL" = x0 ; then
963          HAVE_STAT=t          HAVE_STAT=t
         DEFINES="$DEFINES -DHAVE_STAT"  
964      fi      fi
965      rm -f genmake_tc*      rm -f genmake_tc*
966        echo " --> set HAVE_STAT='$HAVE_STAT'" >> $LOGFILE
967  }  }
968    
   
969  check_netcdf_libs()  {  check_netcdf_libs()  {
970      if test ! "x$SKIP_NETCDF_CHECK" = x ; then      if test ! "x$SKIP_NETCDF_CHECK" = x ; then
971          return          return
972      fi      fi
973      echo >> genmake_warnings      echo >> $LOGFILE
974      echo "running: check_netcdf_libs()" >> genmake_warnings      echo "running: check_netcdf_libs()" >> $LOGFILE
975      cat <<EOF > genmake_tnc.F      cat <<EOF > genmake_tnc.F
976        program fgennc        program fgennc
977  #include "netcdf.inc"  #include "netcdf.inc"
978  EOF  EOF
979      if test ! "x$MPI" = x ; then     #if test ! "x$MPI" = x ; then
980          echo '#include "mpif.h"' >> genmake_tnc.F     #    echo '#include "mpif.h"' >> genmake_tnc.F
981      fi     #fi
982      cat <<EOF >> genmake_tnc.F      cat <<EOF >> genmake_tnc.F
983        integer iret, ncid, xid        integer iret, ncid, xid
984        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)        iret = nf_create('genmake_tnc.nc', NF_CLOBBER, ncid)
# Line 940  EOF Line 989  EOF
989        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)        IF (iret .NE. NF_NOERR) write(*,*) NF_STRERROR(iret)
990        end        end
991  EOF  EOF
992      echo "===  genmake_tnc.F  ===" > genmake_tnc.log      echo "===  genmake_tnc.F  >>>" > genmake_tnc.log
993      cat genmake_tnc.F >> genmake_tnc.log      cat genmake_tnc.F >> genmake_tnc.log
994      echo "===  genmake_tnc.F  ===" >> genmake_tnc.log      echo "<<<  genmake_tnc.F  ===" >> genmake_tnc.log
995      RET_CPP=f      RET_CPP=f
996      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"      COMM="cat genmake_tnc.F | $CPP $DEFINES $INCLUDES"
997      echo "$COMM" >> genmake_tnc.log      echo "$COMM" >> genmake_tnc.log
# Line 958  EOF Line 1007  EOF
1007      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \      $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1008          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1          &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS >> genmake_tnc.log 2>&1
1009      RET_COMPILE=$?      RET_COMPILE=$?
1010      cat genmake_tnc.log >> genmake_warnings      cat genmake_tnc.log >> $LOGFILE
1011    
1012      #EH3  Remove test program execution for machines that either disallow      #EH3  Remove test program execution for machines that either disallow
1013      #EH3  execution or cannot support it (eg. cross-compilers)      #EH3  execution or cannot support it (eg. cross-compilers)
# Line 969  EOF Line 1018  EOF
1018    
1019      if test "x$RET_COMPILE" = x0 ; then      if test "x$RET_COMPILE" = x0 ; then
1020          HAVE_NETCDF=t          HAVE_NETCDF=t
1021            echo "check_netcdf: successful" >> $LOGFILE
1022      else      else
1023          # try again with "-lnetcdf" added to the libs          # try again with "-lnetcdf" added to the libs
1024          echo "try again with added '-lnetcdf'" > genmake_tnc.log          echo "==> try again with added '-lnetcdf'" > genmake_tnc.log
1025          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log          echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1026          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log          echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1027          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log          echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
# Line 979  EOF Line 1029  EOF
1029              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \              &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1030              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1              &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf >> genmake_tnc.log 2>&1
1031          RET_COMPILE=$?          RET_COMPILE=$?
1032          cat genmake_tnc.log >> genmake_warnings          echo >> $LOGFILE
1033            cat genmake_tnc.log >> $LOGFILE
1034          if test "x$RET_COMPILE" = x0 ; then          if test "x$RET_COMPILE" = x0 ; then
1035              LIBS="$LIBS -lnetcdf"              LIBS="$LIBS -lnetcdf"
1036              HAVE_NETCDF=t              HAVE_NETCDF=t
1037                echo "check_netcdf: successful" >> $LOGFILE
1038            else
1039            # try again with "-lnetcdff" added to the libs
1040                echo "==> try again with added '-lnetcdff -lnetcdf'" > genmake_tnc.log
1041                echo "cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS \ " >> genmake_tnc.log
1042                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS \ " >> genmake_tnc.log
1043                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdf" >> genmake_tnc.log
1044                cat genmake_tnc.F | $CPP $DEFINES $INCLUDES > genmake_tnc.$FS 2>/dev/null  \
1045                    &&  $FC $FFLAGS $FOPTIM -c genmake_tnc.$FS >> genmake_tnc.log 2>&1  \
1046                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tnc genmake_tnc.o $LIBS -lnetcdff -lnetcdf >> genmake_tnc.log 2>&1
1047                RET_COMPILE=$?
1048                echo >> $LOGFILE
1049                cat genmake_tnc.log >> $LOGFILE
1050                if test "x$RET_COMPILE" = x0 ; then
1051                    LIBS="$LIBS -lnetcdff -lnetcdf"
1052                    HAVE_NETCDF=t
1053                    echo "check_netcdf: successful" >> $LOGFILE
1054                fi
1055          fi          fi
1056      fi      fi
1057      rm -f genmake_tnc*      rm -f genmake_tnc*
1058        echo " --> set HAVE_NETCDF='$HAVE_NETCDF'" >> $LOGFILE
1059  }  }
1060    
1061    check_lapack_libs()  {
1062        if test ! "x$SKIP_LAPACK_CHECK" = x ; then
1063            return
1064        fi
1065        echo >> $LOGFILE
1066        echo "running: check_lapack_libs()" >> $LOGFILE
1067        cat <<EOF > genmake_tla.F
1068          program fgenla
1069          integer info
1070          integer ipiv( 2 )
1071          double precision ab( 4, 2 ), b( 2 )
1072          data ab / 0., 0., 1., 2., 0., 2., 1., 0. /
1073          data b / 1., 1. /
1074          call dgbsv( 2, 1, 1, 1, ab, 4, ipiv, b, 2, info )
1075          IF (info .NE. 0) write(*,*) 'Error:', info
1076          write(*,*) b
1077          end
1078    EOF
1079        echo "===  genmake_tla.F  >>>" > genmake_tla.log
1080        cat genmake_tla.F >> genmake_tla.log
1081        echo "<<<  genmake_tla.F  ===" >> genmake_tla.log
1082        RET_CPP=f
1083        COMM="cat genmake_tla.F | $CPP $DEFINES $INCLUDES"
1084        echo "$COMM" >> genmake_tla.log
1085        eval $COMM > genmake_tla.$FS 2>/dev/null  &&  RET_CPP=t
1086        if test "x$RET_CPP" = xf ; then
1087            echo "  WARNING: CPP failed to pre-process the lapack test." \
1088                >> genmake_tla.log
1089            echo "    Please check that \$INCLUDES is properly set." \
1090                >> genmake_tla.log
1091        fi
1092        echo "$FC $FFLAGS $FOPTIM -c genmake_tla.$FS  \ " >> genmake_tla.log
1093        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tla.o $LIBS" >> genmake_tla.log
1094        $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1095            &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS >> genmake_tla.log 2>&1
1096        RET_COMPILE=$?
1097        cat genmake_tla.log >> $LOGFILE
1098    
1099        # test program execution not always possible (see check_netcdf_libs)
1100        #
1101        #test -x ./genmake_tla  &&  ./genmake_tla >> genmake_tla.log 2>&1
1102        #RETVAL=$?
1103        #if test "x$RET_COMPILE" = x0 -a "x$RETVAL" = x0 ; then
1104    
1105        if test "x$RET_COMPILE" = x0 ; then
1106            HAVE_LAPACK=t
1107            echo "check_lapack: successful" >> $LOGFILE
1108        else
1109            # try again with "-llapack" added to the libs
1110            echo "==> try again with added '-llapack'" > genmake_tla.log
1111            echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1112            echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1113            echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack" >> genmake_tla.log
1114            cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1115                &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1116                &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack >> genmake_tla.log 2>&1
1117            RET_COMPILE=$?
1118            echo >> $LOGFILE
1119            cat genmake_tla.log >> $LOGFILE
1120            if test "x$RET_COMPILE" = x0 ; then
1121                LIBS="$LIBS -llapack"
1122                HAVE_LAPACK=t
1123                echo "check_lapack: successful" >> $LOGFILE
1124            else
1125            # try again with "-lf77blas -lcblas" added to the libs
1126                echo "==> try again with added '-llapack -lf77blas -lcblas'" > genmake_tla.log
1127                echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1128                echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1129                echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas" >> genmake_tla.log
1130                cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1131                    &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1132                    &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas >> genmake_tla.log 2>&1
1133                RET_COMPILE=$?
1134                echo >> $LOGFILE
1135                cat genmake_tla.log >> $LOGFILE
1136                if test "x$RET_COMPILE" = x0 ; then
1137                    LIBS="$LIBS -llapack -lf77blas -lcblas"
1138                    HAVE_LAPACK=t
1139                    echo "check_lapack: successful" >> $LOGFILE
1140                else
1141                # try again with "-latlas" added to the libs
1142                    echo "==> try again with added '-llapack -lf77blas -lcblas -latlas'" > genmake_tla.log
1143                    echo "cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS \ " >> genmake_tla.log
1144                    echo " &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS \ " >> genmake_tla.log
1145                    echo " &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas" >> genmake_tla.log
1146                    cat genmake_tla.F | $CPP $DEFINES $INCLUDES > genmake_tla.$FS 2>/dev/null  \
1147                        &&  $FC $FFLAGS $FOPTIM -c genmake_tla.$FS >> genmake_tla.log 2>&1  \
1148                        &&  $LINK $FFLAGS $FOPTIM -o genmake_tla genmake_tla.o $LIBS -llapack -lf77blas -lcblas -latlas >> genmake_tla.log 2>&1
1149                    RET_COMPILE=$?
1150                    echo >> $LOGFILE
1151                    cat genmake_tla.log >> $LOGFILE
1152                    if test "x$RET_COMPILE" = x0 ; then
1153                        LIBS="$LIBS -llapack -lf77blas -lcblas -latlas"
1154                        HAVE_LAPACK=t
1155                        echo "check_lapack: successful" >> $LOGFILE
1156                    fi
1157                fi
1158            fi
1159        fi
1160        rm -f genmake_tla*
1161        echo " --> set HAVE_LAPACK='$HAVE_LAPACK'" >> $LOGFILE
1162    }
1163    
1164    check_HAVE_FLUSH()  {
1165        if test ! "x$SKIP_CHECK_FLUSH" = x ; then
1166            return
1167        fi
1168        echo >> $LOGFILE
1169        echo "running: check_HAVE_FLUSH()" >> $LOGFILE
1170        cat <<EOF > genmake_tflsh.$FS
1171          program fgenflsh
1172          integer iounit
1173          character*9 fname
1174          iounit = 26
1175          fname = 'tmp.tflsh'
1176          open(iounit,FILE=fname,STATUS='unknown')
1177          write(iounit,*) 'genmake_tflsh: hello'
1178          call flush(iounit)
1179          close(iounit)
1180          end
1181    EOF
1182        echo "===  genmake_tflsh.$FS  >>>" > genmake_tflsh.log
1183        cat genmake_tflsh.$FS >> genmake_tflsh.log
1184        echo "<<<  genmake_tflsh.$FS  ===" >> genmake_tflsh.log
1185    
1186        echo "$FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS  \ " >> genmake_tflsh.log
1187        echo "  &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh.o $LIBS" >> genmake_tflsh.log
1188        $FC $FFLAGS $FOPTIM -c genmake_tflsh.$FS >> genmake_tflsh.log 2>&1  \
1189            &&  $LINK $FFLAGS $FOPTIM -o genmake_tflsh genmake_tflsh.o $LIBS >> genmake_tflsh.log 2>&1
1190        RET_COMPILE=$?
1191    
1192        if test "x$RET_COMPILE" = x0 ; then
1193            HAVE_FLUSH=t
1194            #cat genmake_tflsh.log >> $LOGFILE
1195            echo "  check_HAVE_FLUSH: successful" >> $LOGFILE
1196        else
1197            HAVE_FLUSH=f
1198            cat genmake_tflsh.log >> $LOGFILE
1199        fi
1200        rm -f genmake_tflsh*
1201        echo " --> set HAVE_FLUSH='$HAVE_FLUSH'" >> $LOGFILE
1202    }
1203    
1204  ###############################################################################  ###############################################################################
1205  #   Sequential part of script starts here  #   Sequential part of script starts here
# Line 1011  ENABLE= Line 1222  ENABLE=
1222  DISABLE=  DISABLE=
1223  # MAKEFILE=  # MAKEFILE=
1224  # MAKEDEPEND=  # MAKEDEPEND=
1225  PDEPEND=  PKG_DEPEND=
1226  DUMPSTATE=t  PKG_GROUPS=
1227  PDEFAULT=  DUMPSTATE=f
1228  OPTFILE=  OPTFILE=
1229  INCLUDES="-I. $INCLUDES"  INCLUDES="-I. $INCLUDES"
1230  FFLAGS=  FFLAGS=
1231  FOPTIM=  FOPTIM=
1232    FEXTRAFLAGS=
1233    USE_EXTENDED_SRC=
1234    EXTENDED_SRC_FLAG=
1235    GET_FC_VERSION=
1236  CFLAGS=  CFLAGS=
1237  KFLAGS1=  KFLAGS1=
1238  KFLAGS2=  KFLAGS2=
# Line 1028  NOOPTFILES= Line 1243  NOOPTFILES=
1243  NOOPTFLAGS=  NOOPTFLAGS=
1244  MPI=  MPI=
1245  MPIPATH=  MPIPATH=
1246    OMP=
1247    OMPFLAG=
1248    USE_R4=
1249  TS=  TS=
1250  PAPIS=  PAPIS=
1251  PCLS=  PCLS=
# Line 1036  PAPI= Line 1254  PAPI=
1254  PCL=  PCL=
1255  HPMT=  HPMT=
1256  GSL=  GSL=
1257    DEVEL=
1258  HAVE_TEST_L=  HAVE_TEST_L=
1259    
1260    # comment this line out to enable lapack test
1261    SKIP_LAPACK_CHECK=t
1262    
1263  # DEFINES checked by test compilation or command-line  # DEFINES checked by test compilation or command-line
1264  HAVE_SYSTEM=  HAVE_SYSTEM=
1265  HAVE_FDATE=  HAVE_FDATE=
# Line 1048  HAVE_STAT= Line 1270  HAVE_STAT=
1270  HAVE_NETCDF=  HAVE_NETCDF=
1271  HAVE_ETIME=  HAVE_ETIME=
1272  IGNORE_TIME=  IGNORE_TIME=
1273    HAVE_LAPACK=
1274    HAVE_FLUSH=
1275    
1276  MODS=  MODS=
1277  TOOLSDIR=  TOOLSDIR=
# Line 1055  SOURCEDIRS= Line 1279  SOURCEDIRS=
1279  INCLUDEDIRS=  INCLUDEDIRS=
1280  STANDARDDIRS="USE_THE_DEFAULT"  STANDARDDIRS="USE_THE_DEFAULT"
1281    
1282    #- local config file
1283    gm_local="genmake_local"
1284    
1285  G2ARGS=  G2ARGS=
1286  BASH=  BASH=
1287  PWD=`pwd`  PWD=`pwd`
# Line 1070  MACHINE=`uname -a` Line 1297  MACHINE=`uname -a`
1297  EXECUTABLE=  EXECUTABLE=
1298  EXEHOOK=  EXEHOOK=
1299  EXEDIR=  EXEDIR=
 PACKAGES_CONF=  
1300  IEEE=  IEEE=
1301  if test "x$MITGCM_IEEE" != x ; then  if test "x$MITGCM_IEEE" != x ; then
1302      IEEE=$MITGCM_IEEE      IEEE=$MITGCM_IEEE
# Line 1091  FTL_TAF_FLAGS= Line 1317  FTL_TAF_FLAGS=
1317  SVD_TAMC_FLAGS=  SVD_TAMC_FLAGS=
1318  TAMC_EXTRA=  TAMC_EXTRA=
1319    
1320    DIVA=
1321    MPIINCLUDEDIR=
1322    MPI_HEADER_FILES=
1323    LOCAL_MPI_HEADERS=
1324    
1325  #  The following state can be set directly by command-line switches  #  The following state can be set directly by command-line switches
1326  gm_s1="OPTFILE PDEPEND PDEFAULT MAKEFILE PLATFORM ROOTDIR MODS DISABLE ENABLE"  gm_s1="ROOTDIR STANDARDDIRS MODS PKG_DEPEND PKG_GROUPS DISABLE ENABLE"
1327  gm_s2="FC CPP IEEE TS PAPIS PCLS PAPI PCL HPMT GSL MPI JAM DUMPSTATE STANDARDDIRS"  gm_s2="PLATFORM OPTFILE MAKE MAKEFILE MAKEDEPEND FC CC MPI OMP USE_R4"
1328    gm_s3="FEXTRAFLAGS IEEE DEVEL GSL TS PAPIS PCLS PAPI PCL HPMT DUMPSTATE"
1329    
1330  #  The following state is not directly set by command-line switches  #  The following state is not directly set by command-line switches
1331  gm_s3="LN S64 KPP LINK PACKAGES MAKEDEPEND PDEPEND PDEFAULT INCLUDES FFLAGS FOPTIM "  gm_s4="LN S64 LINK PACKAGES INCLUDES FFLAGS FOPTIM"
1332  gm_s4="CFLAGS KFLAGS1 KFLAGS2 LIBS KPPFILES NOOPTFILES NOOPTFLAGS"  gm_s5="CFLAGS LIBS KPP KFLAGS1 KFLAGS2 KPPFILES NOOPTFILES NOOPTFLAGS"
1333  gm_s5="TOOLSDIR SOURCEDIRS INCLUDEDIRS PWD MAKE THISHOST THISUSER THISDATE THISVER MACHINE"  gm_s6="PWD TOOLSDIR SOURCEDIRS INCLUDEDIRS EXEDIR EXECUTABLE EXEHOOK"
1334  gm_s6="EXECUTABLE EXEHOOK EXEDIR PACKAGES_CONF"  gm_s7="THISHOST THISUSER THISDATE THISVER MACHINE FC_NAMEMANGLE"
1335  gm_s7="HAVE_SYSTEM HAVE_FDATE FC_NAMEMANGLE HAVE_ETIME"  gm_s8="HAVE_NETCDF HAVE_SYSTEM HAVE_FDATE HAVE_ETIME HAVE_LAPACK HAVE_FLUSH"
1336    
1337  #  The following are all related to adjoint/tangent-linear stuff  #  The following are all related to adjoint/tangent-linear stuff
1338  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"  gm_s10="AUTODIFF_PKG_USED AD_OPTFILE TAMC TAF AD_TAMC_FLAGS AD_TAF_FLAGS"
1339  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"  gm_s11="FTL_TAMC_FLAGS FTL_TAF_FLAGS SVD_TAMC_FLAGS SVD_TAF_FLAGS"
1340  gm_s12="TAF_EXTRA TAMC_EXTRA"  gm_s12="TAF_EXTRA TAMC_EXTRA DIVA MPIINCLUDEDIR MPI_HEADER_FILES"
1341    
1342  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7"  gm_state="COMMANDL $gm_s1 $gm_s2 $gm_s3 $gm_s4 $gm_s5 $gm_s6 $gm_s7 $gm_s8"
1343  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"  gm_state="$gm_state $gm_s10 $gm_s11 $gm_s12"
1344    
1345  cat <<EOF  cat <<EOF
1346    
1347  GENMAKE :  GENMAKE :
1348    
1349  A program for GENerating MAKEfiles for the MITgcm project.  For a  A program for GENerating MAKEfiles for the MITgcm project.
1350  quick list of options, use "genmake -h" or for more detail see:     For a quick list of options, use "genmake2 -h"
1351    or for more detail see the Developer's HOWTO manual at:
1352    http://mitgcm.org/devel_HOWTO/     http://mitgcm.org/public/docs.html
1353    
1354  EOF  EOF
1355    
1356  echo "===  Processing options files and arguments  ==="  LOGFILE="genmake.log"
1357  gm_local="genmake_local"  #- clean-up previous genmake logfiles:
1358  for i in . $MODS ; do  rm -f genmake_state genmake_*optfile $LOGFILE
1359      if test -r $i/$gm_local ; then  
1360          . $i/$gm_local  echo "===  Processing options files and arguments  ==="
1361          break  
     fi  
 done  
 printf "  getting local config information:  "  
 if test -f $gm_local ; then  
     echo "using $gm_local"  
     . $gm_local  
     # echo "DISABLE=$DISABLE"  
     # echo "ENABLE=$ENABLE"  
 else  
     echo "none found"  
 fi  
   
1362  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"  #echo "$0::$1:$2:$3:$4:$5:$6:$7:"
 #OPTIONS=  
 #n=0  
 #for i ; do  
 #   echo "$i  $n"  
 #   setvar="OPTIONS[$n]='$i'"  
 #   #  echo "  $setvar"  
 #   eval "$setvar"  
 #   n=$(( $n + 1 ))  
 #done  
1363  #parse_options  #parse_options
1364  ac_prev=  ac_prev=
1365  for ac_option in "$@" ; do  for ac_option in "$@" ; do
# Line 1162  for ac_option in "$@" ; do Line 1372  for ac_option in "$@" ; do
1372          ac_prev=          ac_prev=
1373          continue          continue
1374      fi      fi
1375        
1376      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`      ac_optarg=`expr "x$ac_option" : 'x[^=]*=\(.*\)'`
1377        
1378      case $ac_option in      case $ac_option in
1379            
1380          -help | --help | -h | --h)          -help | --help | -h | --h)
1381              usage ;;              usage ;;
1382            
1383          -nooptfile | --nooptfile)          -nooptfile | --nooptfile)
1384              OPTFILE="NONE" ;;              OPTFILE="NONE" ;;
1385          -optfile | --optfile | -of | --of)          -optfile | --optfile | -of | --of)
1386              ac_prev=OPTFILE ;;              ac_prev=OPTFILE ;;
1387          -optfile=* | --optfile=* | -of=* | --of=*)          -optfile=* | --optfile=* | -of=* | --of=*)
1388              OPTFILE=$ac_optarg ;;              OPTFILE=$ac_optarg ;;
1389            
1390          -adoptfile | --adoptfile | -adof | --adof)          -adoptfile | --adoptfile | -adof | --adof)
1391              ac_prev=AD_OPTFILE ;;              ac_prev=AD_OPTFILE ;;
1392          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)          -adoptfile=* | --adoptfile=* | -adof=* | --adof=*)
1393              AD_OPTFILE=$ac_optarg ;;              AD_OPTFILE=$ac_optarg ;;
1394            
1395          -pdepend | --pdepend)          -pdepend | --pdepend)
1396              ac_prev=PDEPEND ;;              ac_prev=PKG_DEPEND ;;
1397          -pdepend=* | --pdepend=*)          -pdepend=* | --pdepend=*)
1398              PDEPEND=$ac_optarg ;;              PKG_DEPEND=$ac_optarg ;;
1399            
1400          -pdefault | --pdefault)          -pgroups | --pgroups)
1401              ac_prev=PDEFAULT ;;              ac_prev=PKG_GROUPS ;;
1402          -pdefault=* | --pdefault=*)          -pgroups=* | --pgroups=*)
1403              PDEFAULT=$ac_optarg ;;              PKG_GROUPS=$ac_optarg ;;
1404            
1405          -make | --make | -m | --m)          -make | --make | -m | --m)
1406              ac_prev=MAKE ;;              ac_prev=MAKE ;;
1407          -make=* | --make=* | -m=* | --m=*)          -make=* | --make=* | -m=* | --m=*)
1408              MAKE=$ac_optarg ;;              MAKE=$ac_optarg ;;
1409            
1410          -bash | --bash)          -bash | --bash)
1411              ac_prev=BASH ;;              ac_prev=BASH ;;
1412          -bash=* | --bash=*)          -bash=* | --bash=*)
1413              BASH=$ac_optarg ;;              BASH=$ac_optarg ;;
1414            
1415          -makedepend | --makedepend | -md | --md)          -makedepend | --makedepend | -md | --md)
1416              ac_prev=MAKEDEPEND ;;              ac_prev=MAKEDEPEND ;;
1417          -makedepend=* | --makedepend=* | -md=* | --md=*)          -makedepend=* | --makedepend=* | -md=* | --md=*)
1418              MAKEDEPEND=$ac_optarg ;;              MAKEDEPEND=$ac_optarg ;;
1419            
1420          -makefile | --makefile | -ma | --ma)          -makefile | --makefile | -mf | --mf)
1421              ac_prev=MAKEFILE ;;              ac_prev=MAKEFILE ;;
1422          -makefile=* | --makefile=* | -ma=* | --ma=*)          -makefile=* | --makefile=* | -mf=* | --mf=*)
1423              MAKEFILE=$ac_optarg ;;              MAKEFILE=$ac_optarg ;;
1424            
1425          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)          -platform | --platform | -pl | --pl | -platform=* | --platform=* | -pl=* | --pl=*)
1426              echo "ERROR: The platform option has been removed.  Please specify"              echo "ERROR: The platform option has been removed.  Please specify"
1427              echo "  the build options using the \"optfile\" mechanism."              echo "  the build options using the \"optfile\" mechanism."
1428              echo              echo
1429              usage              usage
1430              ;;              ;;
1431            
1432          -rootdir | --rootdir | -rd | --rd)          -rootdir | --rootdir | -rd | --rd)
1433              ac_prev=ROOTDIR ;;              ac_prev=ROOTDIR ;;
1434          -rootdir=* | --rootdir=* | -rd=* | --rd=*)          -rootdir=* | --rootdir=* | -rd=* | --rd=*)
1435              ROOTDIR=$ac_optarg ;;              ROOTDIR=$ac_optarg ;;
1436            
1437          -mods | --mods | -mo | --mo)          -mods | --mods | -mo | --mo)
1438              ac_prev=MODS ;;              ac_prev=MODS ;;
1439          -mods=* | --mods=* | -mo=* | --mo=*)          -mods=* | --mods=* | -mo=* | --mo=*)
1440              MODS=$ac_optarg ;;              MODS=$ac_optarg ;;
1441            
1442          -disable | --disable)          -disable | --disable)
1443              ac_prev=DISABLE ;;              ac_prev=DISABLE ;;
1444          -disable=* | --disable=*)          -disable=* | --disable=*)
1445              DISABLE=$ac_optarg ;;              DISABLE=$ac_optarg ;;
1446            
1447          -enable | --enable)          -enable | --enable)
1448              ac_prev=ENABLE ;;              ac_prev=ENABLE ;;
1449          -enable=* | --enable=*)          -enable=* | --enable=*)
1450              ENABLE=$ac_optarg ;;              ENABLE=$ac_optarg ;;
1451            
1452          -standarddirs | --standarddirs)          -standarddirs | --standarddirs)
1453              ac_prev=STANDARDDIRS ;;              ac_prev=STANDARDDIRS ;;
1454          -standarddirs=* | --standarddirs=*)          -standarddirs=* | --standarddirs=*)
# Line 1248  for ac_option in "$@" ; do Line 1458  for ac_option in "$@" ; do
1458  #               ac_prev=cpp ;;  #               ac_prev=cpp ;;
1459  #           -cpp=* | --cpp=*)  #           -cpp=* | --cpp=*)
1460  #               CPP=$ac_optarg ;;  #               CPP=$ac_optarg ;;
1461            
1462          -cc | --cc)          -cc | --cc)
1463              ac_prev=CC ;;              ac_prev=CC ;;
1464          -cc=* | --cc=*)          -cc=* | --cc=*)
1465              CC=$ac_optarg ;;              CC=$ac_optarg ;;
1466            
1467          -fortran | --fortran | -fc | --fc)          -fortran | --fortran | -fc | --fc)
1468              ac_prev=FC ;;              ac_prev=FC ;;
1469          -fc=* | --fc=*)          -fc=* | --fc=*)
1470              FC=$ac_optarg ;;              FC=$ac_optarg ;;
1471            
1472          -fs | --fs)          -fs | --fs)
1473              ac_prev=FS ;;              ac_prev=FS ;;
1474          -fs=* | --fs=*)          -fs=* | --fs=*)
1475              FS=$ac_optarg ;;              FS=$ac_optarg ;;
1476            
1477          -fs90 | --fs90)          -fs90 | --fs90)
1478              ac_prev=FS90 ;;              ac_prev=FS90 ;;
1479          -fs90=* | --fs90=*)          -fs90=* | --fs90=*)
1480              FS90=$ac_optarg ;;              FS90=$ac_optarg ;;
1481            
1482            -use_real4 | -use_r4 | -ur4 | --use_real4 | --use_r4 | --ur4 )
1483                USE_R4=true ;;
1484    
1485          -ieee | --ieee)          -ieee | --ieee)
1486              IEEE=true ;;              IEEE=true ;;
1487          -noieee | --noieee)          -noieee | --noieee)
1488              IEEE= ;;              echo "Warning: ignore option '$ac_option' (default is already without '-ieee')" ;;
1489            -devel | --devel)
1490                IEEE=true ; DEVEL=true ;;
1491            -gsl | --gsl)
1492                GSL=true ;;
1493    
1494          -ts | --ts)          -ts | --ts)
1495              TS=true ;;              TS=true ;;
# Line 1289  for ac_option in "$@" ; do Line 1506  for ac_option in "$@" ; do
1506          -hpmt | --hpmt)          -hpmt | --hpmt)
1507              HPMT=true ;;              HPMT=true ;;
1508    
         -gsl | --gsl)  
             GSL=true ;;  
   
1509          -mpi | --mpi)          -mpi | --mpi)
1510              MPI=true ;;              MPI=true ;;
1511          -mpi=* | --mpi=*)          -mpi=* | --mpi=*)
1512              MPIPATH=$ac_optarg              MPIPATH=$ac_optarg
1513              MPI=true ;;              MPI=true ;;
1514            
1515  #       -jam | --jam)          -omp | --omp)
1516  #           JAM=1 ;;              OMP=true ;;
1517  #       -nojam | --nojam)          -omp=* | --omp=*)
1518  #           JAM=0 ;;              OMPFLAG=$ac_optarg
1519                        OMP=true ;;
1520    
1521          -ds | --ds)          -ds | --ds)
1522              DUMPSTATE=t ;;              DUMPSTATE=t ;;
1523            
1524            -extra_flag | --extra_flag)
1525                ac_prev=FEXTRAFLAGS ;;
1526            -extra_flag=* | --extra_flag=*)
1527                FEXTRAFLAGS=$ac_optarg ;;
1528    
1529          -taf_extra | --taf_extra)          -taf_extra | --taf_extra)
1530              ac_prev=TAF_EXTRA ;;              ac_prev=TAF_EXTRA ;;
1531          -taf_extra=* | --taf_extra=*)          -taf_extra=* | --taf_extra=*)
# Line 1315  for ac_option in "$@" ; do Line 1535  for ac_option in "$@" ; do
1535              ac_prev=TAMC_EXTRA ;;              ac_prev=TAMC_EXTRA ;;
1536          -tamc_extra=* | --tamc_extra=*)          -tamc_extra=* | --tamc_extra=*)
1537              TAMC_EXTRA=$ac_optarg ;;              TAMC_EXTRA=$ac_optarg ;;
1538            
1539          -ignoretime | -ignore_time | --ignoretime | --ignore_time)          -ignoretime | -ignore_time | --ignoretime | --ignore_time)
1540              IGNORE_TIME="-DIGNORE_TIME" ;;              IGNORE_TIME="-DIGNORE_TIME" ;;
1541    
# Line 1326  for ac_option in "$@" ; do Line 1546  for ac_option in "$@" ; do
1546              echo "Error: unrecognized option: "$ac_option              echo "Error: unrecognized option: "$ac_option
1547              usage              usage
1548              ;;              ;;
1549            
1550          *)          *)
1551              echo "Error: unrecognized argument: "$ac_option              echo "Error: unrecognized argument: "$ac_option
1552              usage              usage
1553              ;;              ;;
1554            
1555      esac      esac
1556        
1557  done  done
1558    
1559    printf "  getting local config information:  "
1560    if test -f $gm_local ; then
1561        echo "using $gm_local"
1562        . $gm_local
1563    else
1564        echo "none found"
1565    fi
1566    
1567  if test -f ./.genmakerc ; then  if test -f ./.genmakerc ; then
1568      echo      echo
1569      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""      echo "WARNING: genmake2 has detected a copy of the old-style \"./.genmakerc\""
1570      echo "  file.  This file format is no longer supported.  Please see:"      echo "  file.  This file format is no longer supported.  For directions on"
1571      echo      echo "  how to setup and use the new \"genmake2\" script, please see:"
1572      echo "    http://mitgcm.org/devel_HOWTO/"      echo "    http://mitgcm.org/public/devel_HOWTO/"
1573        echo "  and send an email to MITgcm-support@mitgcm.org if you need help."
1574        echo "WARNING: ignore \"./.genmakerc\" and continue."
1575      echo      echo
     echo "  for directions on how to setup and use the new \"genmake2\" input"  
     echo "  files and send an email to MITgcm-support@mitgcm.org if you want help."  
     echo  
1576  fi  fi
1577    
1578  #  Find the MITgcm ${ROOTDIR}  #  Find the MITgcm ${ROOTDIR}
# Line 1358  if test "x${ROOTDIR}" = x ; then Line 1584  if test "x${ROOTDIR}" = x ; then
1584          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do          for d in . .. ../.. ../../.. ../../../.. ../../../../.. ; do
1585              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then              if [ -d "$d/model" -a -d "$d/eesupp" -a -d "$d/pkg" ]; then
1586                  ROOTDIR=$d                  ROOTDIR=$d
1587                  printf "Warning:  ROOTDIR was not specified but there appears to be"                  printf "Warning: ROOTDIR was not specified ;"
1588                  echo " a copy of MITgcm at \"$ROOTDIR\" so we'll try it."                  echo " try using a local copy of MITgcm found at \"$ROOTDIR\""
1589                  break                  break
1590              fi              fi
1591          done          done
# Line 1377  if test ! -d ${ROOTDIR} ; then Line 1603  if test ! -d ${ROOTDIR} ; then
1603  fi  fi
1604    
1605  #  Find the MITgcm ${THISVER}  #  Find the MITgcm ${THISVER}
1606  if test -f "${ROOTDIR}/doc/tag-index" ; then  version_file="${ROOTDIR}/doc/tag-index"
1607      THISVER=`grep '^checkpoint' ${ROOTDIR}/doc/tag-index | head -1`  if test -f $version_file ; then
1608        THISVER=`$AWK '/^checkpoint/{print $1; exit}' $version_file`
1609    #-  remove ./BUILD_INFO.h file if older than version_file
1610        if test -f ./BUILD_INFO.h -a ./BUILD_INFO.h -ot $version_file ; then
1611            echo "  remove ./BUILD_INFO.h (older than ${version_file})"
1612            rm -f ./BUILD_INFO.h
1613        fi
1614  fi  fi
1615    
1616  if test "x$MAKEFILE" = x ; then  if test "x$MAKEFILE" = x ; then
1617      MAKEFILE="Makefile"      MAKEFILE="Makefile"
1618  fi  fi
1619    
1620  echo "  getting OPTFILE information:  "  echo "  getting OPTFILE information:"
1621  if test "x${OPTFILE}" = x ; then  if test "x${OPTFILE}" = x ; then
1622      if test "x$MITGCM_OF" = x ; then      if test "x$MITGCM_OF" = x ; then
1623          echo "Warning: no OPTFILE specified so we'll look for possible settings"          echo "Warning: no OPTFILE specified so we'll look for possible settings"
1624          printf "\n===  Searching for possible settings for OPTFILE  ===\n"          printf "\n===  Searching for possible settings for OPTFILE  ===\n"
1625          find_possible_configs          find_possible_optfile
1626      else      else
1627          OPTFILE=$MITGCM_OF          OPTFILE=$MITGCM_OF
1628      fi      fi
# Line 1405  if test "x$OPTFILE" != xNONE ; then Line 1637  if test "x$OPTFILE" != xNONE ; then
1637              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1638              exit 1              exit 1
1639          fi          fi
1640          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1641              cp -f $OPTFILE "genmake_optfile"              cp -f $OPTFILE "genmake_optfile"
1642          fi          fi
1643      else      else
# Line 1414  if test "x$OPTFILE" != xNONE ; then Line 1646  if test "x$OPTFILE" != xNONE ; then
1646      fi      fi
1647  fi  fi
1648    
1649  echo "  getting AD_OPTFILE information:  "  echo "  getting AD_OPTFILE information:"
1650  if test "x${AD_OPTFILE}" = x ; then  if test "x${AD_OPTFILE}" = x ; then
1651      if test "x$MITGCM_AD_OF" = x ; then      if test "x$MITGCM_AD_OF" = x ; then
1652          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default          AD_OPTFILE=$ROOTDIR/tools/adjoint_options/adjoint_default
# Line 1432  if test "x${AD_OPTFILE}" != xNONE ; then Line 1664  if test "x${AD_OPTFILE}" != xNONE ; then
1664              echo "--please check that variable syntax is bash-compatible"              echo "--please check that variable syntax is bash-compatible"
1665              exit 1              exit 1
1666          fi          fi
1667          if test "x$DUMPSTATE" != xf ; then          if test "x$DUMPSTATE" = xt ; then
1668              cp -f $AD_OPTFILE "genmake_ad_optfile"              cp -f $AD_OPTFILE "genmake_ad_optfile"
1669          fi          fi
1670      else      else
# Line 1460  Error: no Fortran compiler: please speci Line 1692  Error: no Fortran compiler: please speci
1692  EOF  EOF
1693      exit 1      exit 1
1694  fi  fi
1695    if test "x$GET_FC_VERSION" != x ; then
1696      echo "Get compiler version using: $FC $GET_FC_VERSION" >> $LOGFILE
1697      ff=`echo $FC | sed 's/ .*//'` ; xx=`echo $ff | sed 's/^./& /' | sed 's/ .*//'`
1698      if test $xx != '/' ; then which $ff >> $LOGFILE ; fi
1699      $FC $GET_FC_VERSION > genmake_fc_vers1 2> genmake_fc_vers2
1700      if test -s genmake_fc_vers1 ; then
1701        cat genmake_fc_vers1 >> $LOGFILE
1702      else
1703        cat genmake_fc_vers2 >> $LOGFILE
1704      fi
1705      echo "<-- compiler version ----" >> $LOGFILE
1706      rm -f genmake_fc_vers1 genmake_fc_vers2
1707    fi
1708    
1709  if test "x$CC" = x ; then  if test "x$CC" = x ; then
1710      CC=cc      look_for_C_compilers
 #     cat <<EOF 1>&2  
 # Error: no C compiler: please specify using one of the following:  
 #   1) within the options file ("CC=...") as specified by "-of=OPTFILE"  
 #   2) the "-cc=XXX" command-line option  
 #   3) the "./genmake_local" file  
 # EOF  
 #     exit 1  
1711  fi  fi
1712    
1713  if test "x$LINK" = x ; then  if test "x$LINK" = x ; then
1714      LINK=$FC      LINK=$FC
1715  fi  fi
# Line 1477  if test "x$MAKE" = x ; then Line 1717  if test "x$MAKE" = x ; then
1717      MAKE="make"      MAKE="make"
1718  fi  fi
1719  if test "x$CPP" = x ; then  if test "x$CPP" = x ; then
1720      CPP=cpp      CPP="cpp -traditional -P"
1721  fi  fi
1722  #EH3 === UGLY ===  #EH3 === UGLY ===
1723  #  The following is an ugly little hack to check for $CPP in /lib/ and  #  The following is an ugly little hack to check for $CPP in /lib/ and
# Line 1504  EOF Line 1744  EOF
1744  else  else
1745      rm -f test_cpp      rm -f test_cpp
1746  fi  fi
1747    
1748  look_for_makedepend  look_for_makedepend
1749    
1750    #  Check that soft-link command is set and usable
1751  if test "x$LN" = x ; then  if test "x$LN" = x ; then
1752      LN="ln -s"      LN="ln -s"
1753  fi  fi
# Line 1514  RETVAL=$? Line 1757  RETVAL=$?
1757  if test "x$RETVAL" != x0 ; then  if test "x$RETVAL" != x0 ; then
1758      cat <<EOF 1>&2      cat <<EOF 1>&2
1759    
1760  Error: The command "ln -s" failed -- please specify a working soft-link  Error: The command "$LN" failed -- please specify a working soft-link
1761    command in the optfile.    command in the optfile.
1762    
1763  EOF  EOF
# Line 1532  check_for_broken_Ff Line 1775  check_for_broken_Ff
1775    
1776  if test ! "x$MPI" = x ; then  if test ! "x$MPI" = x ; then
1777        echo "  Turning on MPI cpp macros"        echo "  Turning on MPI cpp macros"
1778        DEFINES="$DEFINES -DALLOW_USE_MPI -DALWAYS_USE_MPI"        DEFINES="$DEFINES -DALLOW_USE_MPI"
1779    #- To compile code older than checkpoint63s (2012/09/05), un-comment the following line:
1780    #     DEFINES="$DEFINES -DALWAYS_USE_MPI"
1781    fi
1782    if test ! "x$OMP" = x ; then
1783          echo "  Add OMPFLAG and turn on OpenMP cpp macros"
1784          FFLAGS="$FFLAGS $OMPFLAG"
1785          F90FLAGS="$F90FLAGS $OMPFLAG"
1786          DEFINES="$DEFINES -DUSE_OMP_THREADING"
1787    fi
1788    
1789    if test ! "x$USE_R4" = x ; then
1790          echo "  Turning on LET_RS_BE_REAL4 cpp flag"
1791          DEFINES="$DEFINES -DLET_RS_BE_REAL4"
1792  fi  fi
1793    
1794  if test ! "x$TS" = x ; then  if test ! "x$TS" = x ; then
1795        echo "  Turning on timing per timestep"        echo "  Turning on timing per timestep"
1796        if test ! "x$FOOLAD" = x ; then        if test ! "x$FOOLAD" = x ; then
1797              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP_SFP"
1798        else        else
1799              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"              DEFINES="$DEFINES -DTIME_PER_TIMESTEP"
1800        fi        fi
1801          PACKAGES="$PACKAGES showflops"
1802  fi  fi
1803  if test ! "x$PAPIS" = x ; then  if test ! "x$PAPIS" = x ; then
1804        echo "  Turning on PAPI flop summary per timestep"        echo "  Turning on PAPI flop summary per timestep"
# Line 1553  if test ! "x$PAPIS" = x ; then Line 1810  if test ! "x$PAPIS" = x ; then
1810        fi        fi
1811        INCLUDES="$INCLUDES $PAPIINC"        INCLUDES="$INCLUDES $PAPIINC"
1812        LIBS="$LIBS $PAPILIB"        LIBS="$LIBS $PAPILIB"
1813          PACKAGES="$PACKAGES showflops"
1814  fi  fi
1815  if test ! "x$PCLS" = x ; then  if test ! "x$PCLS" = x ; then
1816        echo "  Turning on PCL counter summary per timestep"        echo "  Turning on PCL counter summary per timestep"
# Line 1564  if test ! "x$PCLS" = x ; then Line 1822  if test ! "x$PCLS" = x ; then
1822        fi        fi
1823        INCLUDES="$INCLUDES $PCLINC"        INCLUDES="$INCLUDES $PCLINC"
1824        LIBS="$LIBS $PCLLIB"        LIBS="$LIBS $PCLLIB"
1825          PACKAGES="$PACKAGES showflops"
1826  fi  fi
1827  if test ! "x$PAPI" = x ; then  if test ! "x$PAPI" = x ; then
1828        if test ! "x$PAPIS" = x ; then        if test ! "x$PAPIS" = x ; then
# Line 1571  if test ! "x$PAPI" = x ; then Line 1830  if test ! "x$PAPI" = x ; then
1830            echo "  Sticking with PAPI flop summary per timestep!"            echo "  Sticking with PAPI flop summary per timestep!"
1831        else        else
1832            echo "  Turning on performance analysis with PAPI"            echo "  Turning on performance analysis with PAPI"
1833            echo "  Please make sure PAPIINC, PAPILIB are defined"            echo "  Please make sure PAPIINC, PAPILIB are defined"
1834            DEFINES="$DEFINES -DUSE_PAPI"            DEFINES="$DEFINES -DUSE_PAPI"
1835            INCLUDES="$INCLUDES $PAPIINC"            INCLUDES="$INCLUDES $PAPIINC"
1836            LIBS="$LIBS $PAPILIB"            LIBS="$LIBS $PAPILIB"
# Line 1583  if test ! "x$PCL" = x ; then Line 1842  if test ! "x$PCL" = x ; then
1842            echo "  Sticking with PCL flop summary per timestep!"            echo "  Sticking with PCL flop summary per timestep!"
1843        else        else
1844            echo "  Turning on performance analysis with PCL"            echo "  Turning on performance analysis with PCL"
1845            echo "  Please make sure PCLINC, PCLLIB are defined"            echo "  Please make sure PCLINC, PCLLIB are defined"
1846            DEFINES="$DEFINES -DUSE_PCL"            DEFINES="$DEFINES -DUSE_PCL"
1847            INCLUDES="$INCLUDES $PCLINC"            INCLUDES="$INCLUDES $PCLINC"
1848            LIBS="$LIBS $PCLLIB"            LIBS="$LIBS $PCLLIB"
# Line 1593  if test ! "x$HPMT" = x ; then Line 1852  if test ! "x$HPMT" = x ; then
1852        if test ! "x$PAPI" = x ; then        if test ! "x$PAPI" = x ; then
1853            echo "  PAPI and the HPM Toolkit cannot co-exist!"            echo "  PAPI and the HPM Toolkit cannot co-exist!"
1854            echo "  Sticking with PAPI!"            echo "  Sticking with PAPI!"
1855        else if test ! "x$PCL" = x ; then        else
1856            if test ! "x$PCL" = x ; then
1857            echo "  PCL and the HPM Toolkit cannot co-exist!"            echo "  PCL and the HPM Toolkit cannot co-exist!"
1858            echo "  Sticking with PCL!"            echo "  Sticking with PCL!"
1859        else          else
1860            echo "  Turning on performance analysis with the HPM Toolkit"            echo "  Turning on performance analysis with the HPM Toolkit"
1861            echo "  Please make sure HPMTINC, HPMTLIB are defined"            echo "  Please make sure HPMTINC, HPMTLIB are defined"
1862            DEFINES="$DEFINES -DUSE_LIBHPM"            DEFINES="$DEFINES -DUSE_LIBHPM"
1863            INCLUDES="$INCLUDES $HPMTINC"            INCLUDES="$INCLUDES $HPMTINC"
1864            LIBS="$LIBS $HPMTLIB"            LIBS="$LIBS $HPMTLIB"
1865        fi          fi
1866        fi        fi
1867  fi  fi
1868  if test ! "x$GSL" = x ; then  if test ! "x$GSL" = x ; then
# Line 1612  if test ! "x$GSL" = x ; then Line 1872  if test ! "x$GSL" = x ; then
1872        INCLUDES="$INCLUDES $GSLINC"        INCLUDES="$INCLUDES $GSLINC"
1873        LIBS="$LIBS $GSLLIB"        LIBS="$LIBS $GSLLIB"
1874  fi  fi
1875    #- if USE_EXTENDED_SRC is set, add EXTENDED_SRC_FLAG to FFLAGS :
1876    if test ! "x$USE_EXTENDED_SRC" = x ; then
1877          FFLAGS="$FFLAGS $EXTENDED_SRC_FLAG"
1878          F90FIXEDFORMAT="$F90FIXEDFORMAT $EXTENDED_SRC_FLAG"
1879    fi
1880    
1881  printf "\n===  Checking system libraries  ===\n"  printf "\n===  Checking system libraries  ===\n"
1882  printf "  Do we have the system() command using $FC...  "  printf "  Do we have the system() command using $FC...  "
# Line 1678  rm -f genmake_tcomp* Line 1943  rm -f genmake_tcomp*
1943  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "  printf "  Can we call simple C routines (here, \"cloc()\") using $FC...  "
1944  check_HAVE_CLOC  check_HAVE_CLOC
1945  if test "x$HAVE_CLOC" != x ; then  if test "x$HAVE_CLOC" != x ; then
1946        DEFINES="$DEFINES -DHAVE_CLOC"
1947      echo "yes"      echo "yes"
1948  else  else
1949      echo "no"      echo "no"
# Line 1692  rm -f genmake_t* Line 1958  rm -f genmake_t*
1958  printf "  Can we unlimit the stack size using $FC...  "  printf "  Can we unlimit the stack size using $FC...  "
1959  check_HAVE_SETRLSTK  check_HAVE_SETRLSTK
1960  if test "x$HAVE_SETRLSTK" = xt ; then  if test "x$HAVE_SETRLSTK" = xt ; then
1961        DEFINES="$DEFINES -DHAVE_SETRLSTK"
1962      echo "yes"      echo "yes"
1963  else  else
1964      echo "no"      echo "no"
# Line 1701  rm -f genmake_t* Line 1968  rm -f genmake_t*
1968  printf "  Can we register a signal handler using $FC...  "  printf "  Can we register a signal handler using $FC...  "
1969  check_HAVE_SIGREG  check_HAVE_SIGREG
1970  if test "x$HAVE_SIGREG" = xt ; then  if test "x$HAVE_SIGREG" = xt ; then
1971        DEFINES="$DEFINES -DHAVE_SIGREG"
1972      echo "yes"      echo "yes"
1973  else  else
1974      echo "no"      echo "no"
# Line 1710  rm -f genmake_t* Line 1978  rm -f genmake_t*
1978  printf "  Can we use stat() through C calls...  "  printf "  Can we use stat() through C calls...  "
1979  check_HAVE_STAT  check_HAVE_STAT
1980  if test "x$HAVE_STAT" != x ; then  if test "x$HAVE_STAT" != x ; then
1981        DEFINES="$DEFINES -DHAVE_STAT"
1982      echo "yes"      echo "yes"
1983  else  else
1984      echo "no"      echo "no"
# Line 1719  rm -f genmake_t* Line 1988  rm -f genmake_t*
1988  printf "  Can we create NetCDF-enabled binaries...  "  printf "  Can we create NetCDF-enabled binaries...  "
1989  check_netcdf_libs  check_netcdf_libs
1990  if test "x$HAVE_NETCDF" != x ; then  if test "x$HAVE_NETCDF" != x ; then
1991        DEFINES="$DEFINES -DHAVE_NETCDF"
1992        echo "yes"
1993    else
1994        echo "no"
1995    fi
1996    
1997    printf "  Can we create LAPACK-enabled binaries...  "
1998    check_lapack_libs
1999    if test "x$HAVE_LAPACK" != x ; then
2000        DEFINES="$DEFINES -DHAVE_LAPACK"
2001      echo "yes"      echo "yes"
2002  else  else
2003      echo "no"      echo "no"
2004  fi  fi
 DEFINES="$DEFINES $IGNORE_TIME"  
2005    
2006    printf "  Can we call FLUSH intrinsic subroutine...  "
2007    check_HAVE_FLUSH
2008    if test "x$HAVE_FLUSH" = xt ; then
2009        DEFINES="$DEFINES -DHAVE_FLUSH"
2010        echo "yes"
2011    else
2012        echo "no"
2013    fi
2014    
2015    DEFINES="$DEFINES $IGNORE_TIME"
2016  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2017      build_embed_encode      build_embed_encode
2018  fi  fi
2019  if test "x$EMBED_SRC" = xt ; then  if test "x$EMBED_SRC" = xt ; then
2020      ENABLE="$ENABLE embed_files"      ENABLE="$ENABLE embed_files"
2021    #   DEFINES="$DEFINES -DHAVE_EMBED_SRC"
2022  fi  fi
2023    
   
2024  printf "\n===  Setting defaults  ===\n"  printf "\n===  Setting defaults  ===\n"
2025  printf "  Adding MODS directories:  "  printf "  Adding MODS directories: "
2026  for d in $MODS ; do  for d in $MODS ; do
2027      if test ! -d $d ; then      if test ! -d $d ; then
2028          echo          echo
2029          echo "Error: MODS directory \"$d\" not found!"          echo "Error: MODS directory \"$d\" not found!"
2030          exit 1          exit 1
2031      else      else
2032          printf " $d"          printf "$d "
2033          SOURCEDIRS="$SOURCEDIRS $d"          SOURCEDIRS="$SOURCEDIRS $d"
2034          INCLUDEDIRS="$INCLUDEDIRS $d"          INCLUDEDIRS="$INCLUDEDIRS $d"
2035      fi      fi
2036  done  done
2037  echo  echo
2038    
2039  if test "x${PLATFORM}" = x ; then  #if test "x${PLATFORM}" = x ; then
2040      PLATFORM=$p_PLATFORM  #    PLATFORM=$p_PLATFORM
2041  fi  #fi
2042    
2043  if test "x${EXEDIR}" = x ; then  if test "x${EXEDIR}" = x ; then
2044      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`      tmp=`echo $PWD | sed -e 's/\// /g' | $AWK '{print $NR}'`
# Line 1790  ERROR: neither of the two default script Line 2078  ERROR: neither of the two default script
2078      ${TOOLSDIR}/set64bitConst.sh      ${TOOLSDIR}/set64bitConst.sh
2079      ${TOOLSDIR}/set64bitConst.csh      ${TOOLSDIR}/set64bitConst.csh
2080    
2081    are working so please check paths or specify (with \$S64) a    are working so please check paths or specify (with \$S64) a
2082    working version of this script.    working version of this script.
2083    
2084  EOF  EOF
# Line 1802  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD Line 2090  THIS_SCRIPT=`echo ${0} | sed 's:'$TOOLSD
2090    
2091  EXECUTABLE=${EXECUTABLE:-mitgcmuv}  EXECUTABLE=${EXECUTABLE:-mitgcmuv}
2092    
2093    #  Set Standard Code Directories:
2094    if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then
2095        STANDARDDIRS="eesupp model"
2096    fi
2097    #  if model in Standard-Code-Dir, add eesupp (needed to compile model)
2098    echo " $STANDARDDIRS " | grep ' model ' > /dev/null 2>&1
2099    ckM=$?
2100    echo " $STANDARDDIRS " | grep ' eesupp ' > /dev/null 2>&1
2101    ckE=$?
2102    if test $ckM = 0 -a $ckE = 1 ; then
2103        STANDARDDIRS="$STANDARDDIRS eesupp"
2104    fi
2105    
2106  #  We have a special set of source files in eesupp/src which are  #  We have a special set of source files in eesupp/src which are
2107  #  generated from some template source files. We'll make them first so  #  generated from some template source files. We'll make them first so
2108  #  they appear as regular source code  #  they appear as regular source code
2109  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then  if test -r $ROOTDIR"/eesupp/src/Makefile" ; then
2110      echo "  Making source files in eesupp from templates"      echo "  Making source files in eesupp from templates"
2111      ( cd $ROOTDIR"/eesupp/src/" && $MAKE ) > make_eesupp.errors 2>&1      ( cd $ROOTDIR"/eesupp/src/" && $MAKE clean_old && $MAKE \
2112        ) > make_eesupp.errors 2>&1
2113      RETVAL=$?      RETVAL=$?
2114      if test "x${RETVAL}" = x0 ; then      if test "x${RETVAL}" = x0 ; then
2115          rm -f make_eesupp.errors          rm -f make_eesupp.errors
# Line 1822  fi Line 2124  fi
2124  for pdir in exch2 regrid ; do  for pdir in exch2 regrid ; do
2125      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then      if test -r $ROOTDIR"/pkg/${pdir}/Makefile" ; then
2126          echo "  Making source files in pkg/${pdir} from templates"          echo "  Making source files in pkg/${pdir} from templates"
2127          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE ) > make_${pdir}.errors 2>&1          ( cd $ROOTDIR"/pkg/"${pdir} && $MAKE clean_old && $MAKE \
2128            ) > make_${pdir}.errors 2>&1
2129          RETVAL=$?          RETVAL=$?
2130          if test "x${RETVAL}" = x0 ; then          if test "x${RETVAL}" = x0 ; then
2131              rm -f make_${pdir}.errors              rm -f make_${pdir}.errors
# Line 1835  for pdir in exch2 regrid ; do Line 2138  for pdir in exch2 regrid ; do
2138  done  done
2139    
2140  printf "\n===  Determining package settings  ===\n"  printf "\n===  Determining package settings  ===\n"
2141  if  test "x${PDEPEND}" = x ; then  if  test "x${PKG_DEPEND}" = x ; then
2142      tmp=$ROOTDIR"/pkg/pkg_depend"      tmp=$ROOTDIR"/pkg/pkg_depend"
2143      if test -r $tmp ; then      if test -r $tmp ; then PKG_DEPEND=$tmp ; fi
2144          PDEPEND=$tmp  fi
2145      else  if  test "x${PKG_DEPEND}" = x ; then
2146          echo "Warning:  No package dependency information was specified."          echo "Warning:  No package dependency information was specified."
2147          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."          echo "  Please check that ROOTDIR/pkg/pkg_depend exists."
     fi  
2148  else  else
2149      if test ! -r ${PDEPEND} ; then      if test ! -r ${PKG_DEPEND} ; then
2150          echo "Error:  can't read package dependency info from PDEPEND=\"$PDEPEND\""          echo "Error:  can't read package dependency info from PKG_DEPEND=\"$PKG_DEPEND\""
2151          exit 1          exit 1
2152      fi      fi
2153        echo "  getting package dependency info from  $PKG_DEPEND"
2154    #  Strip the comments and then convert the dependency file into arrays: PNAME, DNAME
2155        get_pdepend_list $PKG_DEPEND
2156  fi  fi
2157  echo "  getting package dependency info from  $PDEPEND"  
2158  #  Strip the comments and then convert the dependency file into  # A default package groups file "$ROOTDIR/pkg/pkg_groups" is provided
2159  #  two arrays: PNAME, DNAME  #  to define the "default_pkg_list" and package groups (for convenience, one
2160  cat $PDEPEND | sed -e 's/#.*$//g' \  #  can specify a group of packages using names like "ocean" and "atmosphere").
2161      | $AWK 'BEGIN{nn=-1;} (NF>0){ for(i=2;i<=NF;i++){nn++; print "PNAME_"nn"="$1"\nDNAME_"nn"="$i}} END{print "nname="nn}' \  if test "x${PKG_GROUPS}" = x ; then
2162      > ./.pd_tmp      tmp=$ROOTDIR"/pkg/pkg_groups"
2163  RETVAL=$?      if test -r $tmp ; then PKG_GROUPS=$tmp ; fi
2164  if test ! "x${RETVAL}" = x0 ; then  fi
2165      echo "Error: unable to parse package dependencies -- please check PDEPEND=\"$PDEPEND\""  if test "x${PKG_GROUPS}" = x ; then
2166      exit 1          echo "Warning:  No package groups information was specified."
2167            echo "  Please check that ROOTDIR/pkg/pkg_groups exists."
2168    else
2169        if test ! -r ${PKG_GROUPS} ; then
2170            echo "Error:  can't read package groups info from PKG_GROUPS=\"$PKG_GROUPS\""
2171            exit 1
2172        fi
2173        echo "  getting package groups info from      $PKG_GROUPS"
2174  fi  fi
 . ./.pd_tmp  
 rm -f ./.pd_tmp  
2175    
2176  #  Search for default packages.  Note that a "$ROOTDIR/pkg/pkg_groups"  #  Search for packages to compile.
2177  #  file should eventually be added so that, for convenience, one can  echo "  checking list of packages to compile:"
2178  #  specify groups of packages using names like "ocean" and "atmosphere".  PKG_LIST=
2179  echo "  checking default package list:  "  if test "x${PKG_LIST}" = x ; then
 if test "x${PDEFAULT}" = x ; then  
2180      for i in "." $MODS ; do      for i in "." $MODS ; do
2181          if test -r $i"/packages.conf" ; then          if test -r $i"/packages.conf" ; then
2182                  PDEFAULT=$i"/packages.conf"                  PKG_LIST=$i"/packages.conf"
2183                  break                  break
2184          fi          fi
2185      done      done
2186  fi  fi
2187  if test "x${PDEFAULT}" = x ; then  if test "x${PKG_LIST}" = x ; then
2188      PDEFAULT="$ROOTDIR/pkg/pkg_default"      pkg_list='default_pkg_list'
2189  fi      if test "x${PKG_GROUPS}" = x ; then
2190  if test "x${PDEFAULT}" = xNONE ; then          echo "Error:  need package groups info to expand pkg_list=\"$pkg_list\""
2191      echo "    default packages file disabled"          exit 1
2192        fi
2193  else  else
2194      if test ! -r $PDEFAULT ; then      if test ! -r $PKG_LIST ; then
2195          echo "Warning:  can't read default packages from PDEFAULT=\"$PDEFAULT\""          echo "Error:  can't read package list from PKG_LIST=\"$PKG_LIST\""
2196            exit 1
2197      else      else
2198          echo "    using PDEFAULT=\"$PDEFAULT\""          echo "    using PKG_LIST=\"$PKG_LIST\""
2199          #  Strip the comments and add all the names          #  Strip the comments and add all the names
2200          def=`cat $PDEFAULT | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`          pkg_list=`cat $PKG_LIST | sed -e 's/#.*$//g' | $AWK '(NF>0){print $0}'`
2201          RETVAL=$?          RETVAL=$?
2202          if test "x${RETVAL}" != x0 ; then          if test "x${RETVAL}" != x0 ; then
2203              printf "Error: can't parse default package list "              printf "Error: can't parse package list "
2204              echo "-- please check PDEFAULT=\"$PDEFAULT\""              echo "-- please check PKG_LIST=\"$PKG_LIST\""
2205              exit 1              exit 1
2206          fi          fi
         for i in $def ; do  
             PACKAGES="$PACKAGES $i"  
         done  
         echo "    before group expansion packages are: $PACKAGES"  
         RET=1  
         while test $RET = 1 ; do expand_pkg_groups; RET=$?; done  
         echo "    after group expansion packages are:  $PACKAGES"  
2207      fi      fi
2208  fi  fi
2209    for i in $pkg_list ; do
2210        PACKAGES="$PACKAGES $i"
2211    done
2212    echo     "    before group expansion packages are:$PACKAGES"
2213    if test "x${PKG_GROUPS}" != x ; then
2214        RET=1
2215        while test $RET = 1 ; do expand_pkg_groups; RET=$?; done
2216        echo "    after group expansion packages are: $PACKAGES"
2217    fi
2218    
2219  echo "  applying DISABLE settings"  echo "  applying DISABLE settings"
2220    echo "" > ./.tmp_pack
2221  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2222      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2223  done  done
# Line 1931  PACKAGES="$PACKAGES $ENABLE" Line 2245  PACKAGES="$PACKAGES $ENABLE"
2245  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2246      j=`echo $i | sed 's/[-+]//'`      j=`echo $i | sed 's/[-+]//'`
2247      if test ! -d "$ROOTDIR/pkg/$j" ; then      if test ! -d "$ROOTDIR/pkg/$j" ; then
2248          echo "Error: can't find package $i at \"$ROOTDIR/pkg/$i\""          echo "Error: dir '$ROOTDIR/pkg/$i' missing for package '$i'"
2249          exit 1          exit 1
2250      fi      fi
2251      echo $i >> ./.tmp_pack      echo $i >> ./.tmp_pack
2252  done  done
# Line 1941  for i in `grep -v "-" ./.tmp_pack | sort Line 2255  for i in `grep -v "-" ./.tmp_pack | sort
2255      PACKAGES="$PACKAGES $i"      PACKAGES="$PACKAGES $i"
2256  done  done
2257  rm -f ./.tmp_pack  rm -f ./.tmp_pack
2258  echo "    packages are:  $PACKAGES"  echo "    packages are: $PACKAGES"
2259    
2260  #  Check availability of NetCDF and then either build the MNC template  #  Check for package MNC: if NetCDF is available, then build the MNC
2261  #  files or delete mnc from the list of available packages.  #  template files ; otherwise, delete mnc from the list of packages.
2262  echo $PACKAGES | grep ' mnc ' > /dev/null 2>&1  echo " $PACKAGES " | grep ' mnc ' > /dev/null 2>&1
2263  RETVAL=$?  mnc_in=$?
2264  if test "x$RETVAL" = x0 ; then  if test "x$HAVE_NETCDF" != xt ; then
2265      if test "x$HAVE_NETCDF" != xt ; then      if test "x$mnc_in" = x0 ; then
2266          cat <<EOF          cat <<EOF
   
2267  *********************************************************************  *********************************************************************
2268  WARNING: the "mnc" package was enabled but tests failed to compile  WARNING: the "mnc" package was enabled but tests failed to compile
2269    NetCDF applications.  Please check that:    NetCDF applications.  Please check that:
2270    
2271    1) NetCDF is correctly installed for this compiler and    1) NetCDF is correctly installed for this compiler and
2272    2) the LIBS variable (within the "optfile") specifies the correct    2) the LIBS variable (within the "optfile") specifies the correct
2273         NetCDF library to link against.         NetCDF library to link against.
2274    
2275    Due to this failure, the "mnc" package is now DISABLED.    Due to this failure, the "mnc" package is now DISABLED.
2276  *********************************************************************  *********************************************************************
   
2277  EOF  EOF
2278          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`          PACKAGES=`echo $PACKAGES | sed -e 's/mnc//g'`
2279          DISABLE="$DISABLE mnc"          DISABLE="$DISABLE mnc"
2280      else      else
2281          ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1      #  this prevent to add mnc (due to pdepend rules) if not available
2282          RETVAL=$?          DISABLE="$DISABLE mnc"
2283          if test "x${RETVAL}" = x0 ; then      fi
2284              rm -f make_mnc.errors  else
2285          else      # we have NetCDF, we try to build MNC template files
2286              echo "Error: problem encountered while building source files in pkg/mnc:"      ( cd $ROOTDIR"/pkg/mnc" && $MAKE testclean && $MAKE templates ) > make_mnc.errors 2>&1
2287              cat make_mnc.errors 1>&2      RETVAL=$?
2288        if test "x${RETVAL}" = x0 ; then
2289            rm -f make_mnc.errors
2290        else
2291            echo "Error: problem encountered while building source files in pkg/mnc:"
2292            cat make_mnc.errors 1>&2
2293            if test "x$mnc_in" = x0 ; then
2294              exit 1              exit 1
2295            else
2296                DISABLE="$DISABLE mnc"
2297          fi          fi
2298      fi      fi
2299  fi  fi
2300    
2301  echo "  applying package dependency rules"  #  Check for package PROFILES: if NetCDF is not available,
2302  ck=  #  then delete profiles from the list of available packages.
2303  while test "x$ck" != xtt ; do  if test "x$HAVE_NETCDF" != xt ; then
2304        echo " $PACKAGES " | grep ' profiles ' > /dev/null 2>&1
2305        RETVAL=$?
2306        if test "x$RETVAL" = x0 ; then
2307            cat <<EOF
2308    *********************************************************************
2309    WARNING: the "profiles" package was enabled but tests failed to
2310      compile NetCDF applications.  Please check that:
2311    
2312      1) NetCDF is correctly installed for this compiler and
2313      2) the LIBS variable (within the "optfile") specifies the correct
2314           NetCDF library to link against.
2315    
2316      Due to this failure, the "profiles" package is now DISABLED.
2317    *********************************************************************
2318    EOF
2319            PACKAGES=`echo $PACKAGES | sed -e 's/profiles//g'`
2320            DISABLE="$DISABLE profiles"
2321        else
2322        #  this prevent to add profiles (due to pdepend rules) if not available
2323            DISABLE="$DISABLE profiles"
2324        fi
2325    fi
2326    
2327    #  Check for package RADTRANS: if LAPACK is not available,
2328    #  then issue a warning that the direct radtrans solver is not available.
2329    if test "x$HAVE_LAPACK" != xt ; then
2330        echo " $PACKAGES " | grep ' radtrans ' > /dev/null 2>&1
2331        RETVAL=$?
2332        if test "x$RETVAL" = x0 ; then
2333            cat <<EOF
2334    *********************************************************************
2335    WARNING: the "radtrans" package was enabled but tests failed to
2336      compile LAPACK applications.  This means that the direct radtrans
2337      solver is not available and compilation will fail if it is enabled.
2338      If you want to use the direct solver, please check that:
2339    
2340      1) LAPACK is correctly installed for this compiler and
2341      2) the LIBS variable (within the "optfile") specifies the correct
2342         LAPACK library to link against.
2343    *********************************************************************
2344    EOF
2345        fi
2346    fi
2347    
2348    if  test "x${PKG_DEPEND}" != x ; then
2349      echo "  applying package dependency rules"
2350      ck=
2351      while test "x$ck" != xtt ; do
2352      i=0      i=0
2353      # rtot=${#PNAME[@]}      # rtot=${#PNAME[@]}
2354      rtot=$nname      rtot=$nname
2355      while test $i -lt $rtot ; do      while test $i -le $rtot ; do
2356    
2357          #  Is $pname in the current $PACKAGES list?          #  Is $pname in the current $PACKAGES list?
2358          #  pname=${PNAME[$i]}          #  pname=${PNAME[$i]}
# Line 1996  while test "x$ck" != xtt ; do Line 2364  while test "x$ck" != xtt ; do
2364                  pin="t"                  pin="t"
2365              fi              fi
2366          done          done
2367            #  or in the current $STANDARDDIRS list?
2368            for p in $STANDARDDIRS ; do
2369                if test "x$p" = "x$pname" ; then pin="t" ; fi
2370            done
2371    
2372          #  Is the DNAME entry a (+) or (-) rule ?          #  Is the DNAME entry a (+) or (-) rule ?
2373          tmp="dname=\"\$DNAME_$i\""          tmp="dname=\"\$DNAME_$i\""
# Line 2018  while test "x$ck" != xtt ; do Line 2390  while test "x$ck" != xtt ; do
2390    
2391          #  Do we need to add $dname according to the dependency rules?          #  Do we need to add $dname according to the dependency rules?
2392          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then          if test "x$pin" = xt -a "x$plus" = "x+" -a "x$din" = xf ; then
2393                #echo "   " $pname ": need to add :" $dname
2394              in_dis="f"              in_dis="f"
2395              for dis in $DISABLE ; do              for dis in $DISABLE ; do
2396                  if test "x$dis" = "x$dname" ; then                  if test "x$dis" = "x$dname" ; then
# Line 2038  while test "x$ck" != xtt ; do Line 2411  while test "x$ck" != xtt ; do
2411          #  Do we need to get rid of $dname according to the dependency rules?          #  Do we need to get rid of $dname according to the dependency rules?
2412          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then          if test "x$pin" = xt -a "x$plus" = "x-" -a "x$din" = xt; then
2413              echo "Error: can't satisfy package dependencies:"              echo "Error: can't satisfy package dependencies:"
2414              echo "  \"$pname\" was requested but is disallowed by"              echo "  \"$pname\" was requested but is disallowed by"
2415              echo "  the dependency rules for \"$dname\""              echo "  the dependency rules for \"$dname\""
2416              exit 1              exit 1
2417          fi          fi
2418          i=`echo "$i + 1" | bc -l`          i=`echo "$i + 1" | bc -l`
2419          #i=$(( $i + 1 ))          #i=$(( $i + 1 ))
2420      done      done
2421      ck=$ck"t"      ck=$ck"t"
2422  done    done
2423  echo "    packages are:  $PACKAGES"    echo "    packages are: $PACKAGES"
2424    fi
2425  for i in $PACKAGES ; do  for i in $PACKAGES ; do
2426      adr="$ROOTDIR/pkg/$i"      adr="$ROOTDIR/pkg/$i"
2427      if test -d $adr ; then      if test -d $adr ; then
# Line 2064  done Line 2438  done
2438    
2439  # Create a list of #define and #undef to enable/disable packages  # Create a list of #define and #undef to enable/disable packages
2440  PACKAGES_DOT_H=PACKAGES_CONFIG.h  PACKAGES_DOT_H=PACKAGES_CONFIG.h
2441  #  The following UGLY HACK sets multiple "#undef"s and it needs to go  #  The following UGLY HACK sets multiple "#undef"s and it needs to go
2442  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h  #  away.  On 2003-08-12, CNH, JMC, and EH3 agreed that the CPP_OPTIONS.h
2443  #  file would eventually be split up so that all package-related #define  #  file would eventually be split up so that all package-related #define
2444  #  statements could be separated and handled only by genmake.  #  statements could be separated and handled only by genmake.
2445  names=`ls -1 "$ROOTDIR/pkg"`  names=`ls -1 "$ROOTDIR/pkg"`
# Line 2082  for n in $names ; do Line 2456  for n in $names ; do
2456          done          done
2457          if test "x$has_pack" = xf ; then          if test "x$has_pack" = xf ; then
2458              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`              undef=`echo "ALLOW_$n" | sed -e 'y/abcdefghijklmnopqrstuvwxyz/ABCDEFGHIJKLMNOPQRSTUVWXYZ/'`
2459              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"              DISABLED_PACKAGES="$DISABLED_PACKAGES -U$undef"
2460          fi          fi
2461      fi      fi
2462  done  done
# Line 2093  for i in $PACKAGES ; do Line 2467  for i in $PACKAGES ; do
2467  #eh3 DEFINES="$DEFINES -D$def"  #eh3 DEFINES="$DEFINES -D$def"
2468    
2469  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!  #EH3  WARNING :  This is an UGLY HACK that needs to be removed!!!
2470      case $i in      case $i in
2471          aim_v23)          aim_v23)
2472              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"              ENABLED_PACKAGES="$ENABLED_PACKAGES -DALLOW_AIM"
2473              echo "Warning: ALLOW_AIM is set to enable aim_v23."              echo "Warning: ALLOW_AIM is set to enable aim_v23."
2474              ;;              ;;
2475      esac      esac
# Line 2103  for i in $PACKAGES ; do Line 2477  for i in $PACKAGES ; do
2477    
2478  done  done
2479    
2480  echo "  Adding STANDARDDIRS"  echo "  Adding STANDARDDIRS='$STANDARDDIRS'"
2481  BUILDDIR=${BUILDDIR:-.}  BUILDDIR=${BUILDDIR:-.}
 if test "x$STANDARDDIRS" = xUSE_THE_DEFAULT ; then  
     STANDARDDIRS="eesupp model"  
 fi  
2482  if test "x$STANDARDDIRS" != x ; then  if test "x$STANDARDDIRS" != x ; then
2483      for d in $STANDARDDIRS ; do      for d in $STANDARDDIRS ; do
2484          adr="$ROOTDIR/$d/src"          adr="$ROOTDIR/$d/src"
# Line 2140  for i in $spaths ; do Line 2511  for i in $spaths ; do
2511      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_OPTIONS" = x ; then
2512          echo "    found CPP_OPTIONS=\"$try\""          echo "    found CPP_OPTIONS=\"$try\""
2513          CPP_OPTIONS="$try"          CPP_OPTIONS="$try"
2514          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h          # New safety test: make sure packages are not mentioned in CPP_OPTIONS.h
2515          for n in $names ; do          for n in $names ; do
2516              test_for_package_in_cpp_options $CPP_OPTIONS $n              test_for_package_in_cpp_options $CPP_OPTIONS $n
2517          done          done
2518      fi      fi
2519      try="$i/CPP_EEOPTIONS.h"      try="$i/CPP_EEOPTIONS.h"
2520      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then      if test -f $try -a -r $try -a "x$CPP_EEOPTIONS" = x ; then
2521          echo "    found CPP_EEOPTIONS=\"$try\""          echo "    found CPP_EEOPTIONS=\"$try\""
2522          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h          # New safety test: make sure MPI is not determined by CPP_EEOPTIONS.h
2523  #**** not yet enabled ****  #**** not yet enabled ****
2524  #        test_for_mpi_in_cpp_eeoptions $try  #        test_for_mpi_in_cpp_eeoptions $try
2525  #**** not yet enabled ****  #**** not yet enabled ****
# Line 2162  fi Line 2533  fi
2533    
2534  #  Here, we build the list of files to be "run through" the adjoint  #  Here, we build the list of files to be "run through" the adjoint
2535  #  compiler.  #  compiler.
2536  if test -f ./ad_files ; then  if test -f ./adSrcFiles.tmp ; then
2537      rm -f ./ad_files      rm -f ./adSrcFiles.tmp
2538  fi  fi
2539  echo "  Creating the list of files for the adjoint compiler."  echo "  Creating the list of files for the adjoint compiler."
2540    touch adSrcFiles.tmp
2541  for i in $SOURCEDIRS ; do  for i in $SOURCEDIRS ; do
2542      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`      list_files=`( cd $i && ls -1 *.list 2>/dev/null )`
2543      for j in $list_files ; do      for j in $list_files ; do
2544          cat $i/$j >> ad_files          cat $i/$j >> adSrcFiles.tmp
2545      done      done
2546  done  done
2547  if test ! "x"$FS = "x.f" ; then  if test ! "x"$FS = "x.f" ; then
2548      cat ad_files | sed -e "s/\.f/.$FS/g" > ad_files_f      cat adSrcFiles.tmp | sed -e "s/\.f/.$FS/g" > adSrcFiles.tmp_f
2549      mv -f ad_files_f ad_files      mv -f adSrcFiles.tmp_f adSrcFiles.tmp
2550  fi  fi
2551    
2552  echo  echo
# Line 2186  for i in $INCLUDEDIRS ; do Line 2558  for i in $INCLUDEDIRS ; do
2558      fi      fi
2559  done  done
2560    
2561  if test ! "x$DIVA" = x ; then  if test ! "x$DIVA" = x -a ! "x$MPI" = x ; then
2562      echo "  Creating the pseudo-MPI include directory"    if test ! "x$MPIINCLUDEDIR" = x ; then
2563      INCLUDES="-I./mpi_headers $INCLUDES"      if test -d $MPIINCLUDEDIR ; then
2564      rm -rf ./mpi_headers          echo "  Creating the pseudo-MPI include directory"
2565      mkdir -p ./mpi_headers          INCLUDES="-I./mpi_headers $INCLUDES"
2566            rm -rf ./mpi_headers
2567      if test "x$MPIINCLUDEDIR" = x ; then          mkdir -p ./mpi_headers
2568          if test "x$MPIHOME" = x ; then          #  Do a local copy of MPI headers files (in local dir ./mpi_headers/) after
2569              MPIHOME='/usr'          #   checking for additional included headers (in case of chain of included
2570          fi          #   header); also set LOCAL_MPI_HEADERS (if not already set)
2571          MPIINCLUDEDIR='$MPIHOME/include'          mpi_headers_do_local_copy
2572      fi      else
2573                echo "WARNING: MPIINCLUDEDIR='$MPIINCLUDEDIR' is not a dir"
2574      if test -r $MPIINCLUDEDIR/mpif.h ; then          echo "WARNING: ==> cannot create pseudo-MPI include directory"
2575          for i in $MPI_HEADER_FILES; do  #       exit -1
             cp -p $MPIINCLUDEDIR/$i ./mpi_headers  
         done  
   
         perl -i -pe 's/MPI_DISPLACEMENT_CURRENT=-1_8/MPI_DISPLACEMENT_CURRENT=-1/g' mpi_headers/mpif.h  
     else  
         echo " We cannot create a copy of mpif.h!"  
         exit -1  
2576      fi      fi
2577      fi
2578  fi  fi
2579    
2580  echo "  Determining the list of source and include files"  echo "  Determining the list of source and include files"
# Line 2232  if test ! -r ".links.tmp/foo" ; then Line 2598  if test ! -r ".links.tmp/foo" ; then
2598      exit 1      exit 1
2599  fi  fi
2600  rm -f .links.tmp/foo  rm -f .links.tmp/foo
2601    
2602    if test "x$OPENAD" != x ; then
2603        OAD_DONT_COMPILE="/dev/null"
2604        OAD_DONT_TRANSFORM="/dev/null"
2605        OAD_KEEP_ORIGINAL="/dev/null"
2606        OAD_CB2M_FILES="/dev/null"
2607        OADTOOLS="$TOOLSDIR/OAD_support"
2608        test -f "oadtempflile"  &&  \rm -f "oadtempflile"
2609    cat >> "oadtempflile" <<EOF
2610    $OADTOOLS
2611    EOF
2612        echo "  looking for dontCompile file:  "
2613        for i in "." $MODS ; do
2614            if test -r $i"/dontCompile" ; then
2615                OAD_DONT_COMPILE=$i"/dontCompile"
2616                echo "     found $OAD_DONT_COMPILE"
2617                break
2618            fi
2619        done
2620        echo "  looking for dontTransform file:  "
2621        for i in "." $MODS ; do
2622            if test -r $i"/dontTransform" ; then
2623                OAD_DONT_TRANSFORM=$i"/dontTransform"
2624                echo "     found $OAD_DONT_TRANSFORM"
2625                break
2626            fi
2627        done
2628        echo "  looking for keepOriginal file:  "
2629        for i in "." $MODS ; do
2630            if test -r $i"/keepOriginal" ; then
2631                OAD_KEEP_ORIGINAL=$i"/keepOriginal"
2632                echo "     found $OAD_KEEP_ORIGINAL"
2633                break
2634            fi
2635        done
2636        echo "  looking for cb2mFiles:  "
2637        for i in "." $MODS ; do
2638            if test -r $i"/cb2mFiles" ; then
2639                OAD_CB2M_FILES=$i"/cb2mFiles"
2640                echo "     found $OAD_CB2M_FILES"
2641                break
2642            fi
2643        done
2644        echo "   OpenAD exceptions:  "
2645    fi
2646    
2647  echo "# This section creates symbolic links" > srclinks.tmp  echo "# This section creates symbolic links" > srclinks.tmp
2648  echo "" >> srclinks.tmp  echo "" >> srclinks.tmp
2649  printf 'SRCFILES = '    > srclist.inc  printf 'F77_SRC_FILES = ' > F77srclist.tmp
2650  printf 'CSRCFILES = '   > csrclist.inc  printf 'NON_AD_F77_SRC_FILES = ' > nonADF77srclist.tmp
2651  printf 'F90SRCFILES = ' > f90srclist.inc  printf 'C_SRC_FILES = '   > csrclist.tmp
2652  printf 'HEADERFILES = ' > hlist.inc  printf 'F90_SRC_FILES = ' > F90srclist.tmp
2653  printf 'AD_FLOW_FILES = ' > ad_flow_files.inc  printf 'H_SRC_FILES = '   > hsrclist.tmp
2654    printf 'AD_FLOW_FILES = ' > ad_flow_files.tmp
2655  alldirs="$SOURCEDIRS $INCLUDEDIRS ."  alldirs="$SOURCEDIRS $INCLUDEDIRS ."
2656  for d in $alldirs ; do  for d in $alldirs ; do
2657      deplist=      deplist=
2658      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`      sfiles=`( cd $d; echo *.[h,c,F] *.flow )`
2659      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`      sfiles=`( echo $sfiles; cd $d; echo *.F90 )`
2660        if test "x$OPENAD" != x ; then
2661            sfiles=`( echo $sfiles | grep -v _cb2m\. )`
2662        fi
2663      for sf in $sfiles ; do      for sf in $sfiles ; do
2664          if test ! -r ".links.tmp/$sf" ; then          if test ! -r ".links.tmp/$sf" ; then
2665              if test -f "$d/$sf" ; then              if test -f "$d/$sf" ; then
2666                  ignore_f=f                  ignore_f=f
2667                  case $d/$sf in                  case $d/$sf in
2668                    ./$PACKAGES_DOT_H)                    ./$PACKAGES_DOT_H)
2669                          ignore_f=t                          ignore_f=t
2670                          ;;                          ;;
2671                    ./AD_CONFIG.h)                    ./AD_CONFIG.h)
2672                          ignore_f=t                          ignore_f=t
2673                          ;;                          ;;
2674                    ./FC_NAMEMANGLE.h)                    ./FC_NAMEMANGLE.h)
2675                          ignore_f=t                          ignore_f=t
2676                          ;;                          ;;
2677                    ./BUILD_INFO.h)                    ./BUILD_INFO.h)
2678                          ignore_f=t                          ignore_f=t
2679                          ;;                          ;;
2680                    ./EMBEDDED_FILES.h)                    ./EMBEDDED_FILES.h)
2681                          ignore_f=t                          ignore_f=t
2682                          ;;                          ;;
2683                    *)                    *)
2684                          #  For the local directory *ONLY*,                          #  For the local directory *ONLY*,
2685                          #  ignore all soft-links                          #  ignore all soft-links
2686                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then                          if test "x$HAVE_TEST_L" = xt -a "x$d" = x. -a -L $sf ; then
# Line 2274  for d in $alldirs ; do Line 2690  for d in $alldirs ; do
2690                              deplist="$deplist $sf"                              deplist="$deplist $sf"
2691                          fi                          fi
2692                          ;;                          ;;
2693                  esac                  esac
2694                  if test "x$ignore_f" = xf ; then                  if test "x$ignore_f" = xf ; then
2695                      extn=`echo $sf | $AWK -F. '{print $NF}'`                      extn=`echo $sf | $AWK -F. '{print $NF}'`
2696                      case $extn in                      case $extn in
2697                          F)                        F)
2698                              echo    " \\"  >> srclist.inc                          echo    " \\"  >> F77srclist.tmp
2699                              printf " $sf" >> srclist.inc                          printf " $sf" >> F77srclist.tmp
2700                              ;;                          if test "x$OPENAD" != x ; then
2701                          F90)                              basename=${sf%%.F}
2702                              echo    " \\"  >> f90srclist.inc                              isAD=`egrep ^$basename.f'[  ]*' adSrcFiles.tmp`
2703                              printf " $sf" >> f90srclist.inc                              if test -z "$isAD" ; then
2704                              ;;                                  toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE}`
2705                          c)                                  if test -z "$toBeIgnored" ; then
2706                              echo    " \\"  >> csrclist.inc                                      echo    " \\"  >> nonADF77srclist.tmp
2707                              printf " $sf" >> csrclist.inc                                      printf " $sf" >> nonADF77srclist.tmp
2708                              ;;                                  else
2709                          h)                                      echo "    not to be compiled   :  $sf"
2710                              echo    " \\"  >> hlist.inc                                  fi
2711                              printf " $sf" >> hlist.inc                              else # file is initially listed as an AD file we want to exclude it
2712                              ;;                                   # or we want to retain the untransformed version
2713                          flow)                                  notToBeTransformed=`egrep ^$basename'[      ]*' ${OAD_DONT_TRANSFORM}`
2714                              echo    " \\"  >> ad_flow_files.inc                                  untransformedVersionToBeKept=`egrep ^$basename'[      ]*' ${OAD_KEEP_ORIGINAL}`
2715                              printf " $sf" >> ad_flow_files.inc                                  if test -n "$notToBeTransformed"; then
2716                              ;;                                      echo "    not to be transformed:  $sf"
2717                      esac                                  fi
2718                  fi                                  if test -n "$untransformedVersionToBeKept" ; then
2719                                        echo "    original to be kept  :  $sf"
2720                                    fi
2721                                    if test -n "$notToBeTransformed" -o -n "$untransformedVersionToBeKept" ; then
2722                                        echo    " \\"  >> nonADF77srclist.tmp
2723                                        printf " $sf" >> nonADF77srclist.tmp
2724                                    fi
2725                                fi
2726                            fi
2727                            ;;
2728                        F90)
2729                            echo    " \\"  >> F90srclist.tmp
2730                            printf " $sf" >> F90srclist.tmp
2731                            ;;
2732                        c)
2733                            echo    " \\"  >> csrclist.tmp
2734                            printf " $sf" >> csrclist.tmp
2735                            ;;
2736                        h)
2737                            echo    " \\"  >> hsrclist.tmp
2738                            printf " $sf" >> hsrclist.tmp
2739                            ;;
2740                        flow)
2741                            echo    " \\"  >> ad_flow_files.tmp
2742                            printf " $sf" >> ad_flow_files.tmp
2743                            ;;
2744                       esac
2745                    fi
2746              fi              fi
2747          fi          fi
2748      done      done
2749      if test "x$deplist" != x ; then      if test "x$deplist" != x ; then
2750          if test "$d" != "." ; then
2751          echo "" >> srclinks.tmp          echo "" >> srclinks.tmp
2752          echo "#  These files are linked from $d" >> srclinks.tmp          echo "#  These files are linked from $d" >> srclinks.tmp
2753          echo "$deplist :" >> srclinks.tmp          echo "$deplist :" >> srclinks.tmp
2754          printf "\t\$(LN) %s/\$@ \$@\n" $d >> srclinks.tmp  # We need to make sure that the link isn't already there.
2755    # This may happen when make thinks that a header file has to be "remade"
2756    # because a module it depends on has changed.  In this case we do nothing.
2757            printf "\tif [ ! -L \$@ ]; then \$(LN) %s/\$@ \$@; fi\n" $d >> srclinks.tmp
2758          fi
2759      fi      fi
2760  done  done
2761  rm -rf .links.tmp  rm -rf .links.tmp
2762  echo "" >> srclist.inc  echo "" >> F77srclist.tmp
2763  echo "" >> csrclist.inc  echo "" >> nonADF77srclist.tmp
2764  echo "" >> f90srclist.inc  echo "" >> csrclist.tmp
2765  echo "" >> hlist.inc  echo "" >> F90srclist.tmp
2766  echo "" >> ad_flow_files.inc  echo "" >> hsrclist.tmp
2767    echo "" >> ad_flow_files.tmp
2768    
2769    CMDLINE=$0
2770    for xx in "$@" ; do nw=`echo $xx | wc -w`
2771        if test $nw = '1' ; then CMDLINE="$CMDLINE $xx"
2772                            else CMDLINE="$CMDLINE '$xx'" ; fi
2773    done
2774    
2775  if test -f $MAKEFILE ; then  if test -f $MAKEFILE ; then
2776      mv -f $MAKEFILE "$MAKEFILE.bak"      mv -f $MAKEFILE "$MAKEFILE.old"
2777  fi  fi
2778  echo "  Writing makefile: $MAKEFILE"  echo "  Writing makefile: $MAKEFILE"
2779  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE  echo "# Multithreaded + multi-processing makefile for:" > $MAKEFILE
# Line 2326  echo "#    $MACHINE" >> $MAKEFILE Line 2781  echo "#    $MACHINE" >> $MAKEFILE
2781  echo "# This makefile was generated automatically on" >> $MAKEFILE  echo "# This makefile was generated automatically on" >> $MAKEFILE
2782  echo "#    $THISDATE" >> $MAKEFILE  echo "#    $THISDATE" >> $MAKEFILE
2783  echo "# by the command:" >> $MAKEFILE  echo "# by the command:" >> $MAKEFILE
2784  echo "#    $0 $G2ARGS" >> $MAKEFILE  echo "#    $CMDLINE"  >> $MAKEFILE
2785  echo "# executed by:" >> $MAKEFILE  echo "# executed by:" >> $MAKEFILE
2786  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE  echo "#    ${THISUSER}@${THISHOST}:${THISCWD}" >> $MAKEFILE
2787    
# Line 2337  EXE_SVD=$EXECUTABLE"_svd" Line 2792  EXE_SVD=$EXECUTABLE"_svd"
2792  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2793  #  #
2794  # OPTFILE="$OPTFILE"  # OPTFILE="$OPTFILE"
2795  #  #
2796  # BUILDDIR     : Directory where object files are written  # BUILDDIR     : Directory where object files are written
2797  # SOURCEDIRS   : Directories containing the source (.F) files  # SOURCEDIRS   : Directories containing the source (.F) files
2798  # INCLUDEDIRS  : Directories containing the header-source (.h) files  # INCLUDEDIRS  : Directories containing the header-source (.h) files
# Line 2348  cat >>$MAKEFILE <<EOF Line 2803  cat >>$MAKEFILE <<EOF
2803  # INCLUDES     : Directories searched for header files  # INCLUDES     : Directories searched for header files
2804  # DEFINES      : Macro definitions for CPP  # DEFINES      : Macro definitions for CPP
2805  # MAKEDEPEND   : Dependency generator  # MAKEDEPEND   : Dependency generator
 # KPP          : Special preprocessor command (specific to platform)  
 # KFLAGS       : Flags for KPP  
2806  # FC           : Fortran compiler command  # FC           : Fortran compiler command
2807  # FFLAGS       : Configuration/debugging options for FC  # FFLAGS       : Configuration/debugging options for FC
2808  # FOPTIM       : Optimization options for FC  # FOPTIM       : Optimization options for FC
# Line 2357  cat >>$MAKEFILE <<EOF Line 2810  cat >>$MAKEFILE <<EOF
2810  # LIBS         : Library flags /or/ additional optimization/debugging flags  # LIBS         : Library flags /or/ additional optimization/debugging flags
2811    
2812  ROOTDIR     = ${ROOTDIR}  ROOTDIR     = ${ROOTDIR}
2813  BUILDDIR    = ${BUILDDIR}    BUILDDIR    = ${BUILDDIR}
2814  SOURCEDIRS  = ${SOURCEDIRS}  SOURCEDIRS  = ${SOURCEDIRS}
2815  INCLUDEDIRS = ${INCLUDEDIRS}  INCLUDEDIRS = ${INCLUDEDIRS}
2816  EXEDIR      = ${EXEDIR}  EXEDIR      = ${EXEDIR}
2817  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}  EXECUTABLE  = \$(EXEDIR)/${EXECUTABLE}
2818  TOOLSDIR    = ${TOOLSDIR}  TOOLSDIR    = ${TOOLSDIR}
2819    OADTOOLS    = ${OADTOOLS}
2820    
2821  #eh3  new defines for the adjoint work  #eh3  new defines for the adjoint work
2822  AUTODIFF    = ${ROOTDIR}/pkg/autodiff  AUTODIFF    = ${ROOTDIR}/pkg/autodiff
# Line 2383  else Line 2837  else
2837      echo "EMBEDDED_FILES = " >>$MAKEFILE      echo "EMBEDDED_FILES = " >>$MAKEFILE
2838  fi  fi
2839    
2840  #  Note: figure out some way to add Hyades JAM libraries here  # extract default cpp search path so we can pass it to makedepend
2841    CPPINCLUDES=`cat /dev/null | $CPP -v 2>&1 | awk '/^End of search/{f=0}!/^\#/{if(f){printf " -I%s", $1;}}/^\#include "..." search start/{f=1}'`
2842    
2843  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2844  # Unix ln (link)  # Unix ln (link)
2845  LN = ${LN}  LN = ${LN}
 # C preprocessor  
 CPP = cat \$< | ${S64} | ${CPP}  
2846  # Dependency generator  # Dependency generator
2847  MAKEDEPEND = ${MAKEDEPEND}  MAKEDEPEND = ${MAKEDEPEND}
2848  # Special preprocessor (KAP on DECs, FPP on Crays)  # Special preprocessor (KAP on DECs, FPP on Crays)
# Line 2406  LINK = ${LINK} ${LDADD} Line 2860  LINK = ${LINK} ${LDADD}
2860  DEFINES = ${DEFINES}  DEFINES = ${DEFINES}
2861  # Includes for CPP  # Includes for CPP
2862  INCLUDES = ${INCLUDES}  INCLUDES = ${INCLUDES}
2863    # default CPP includes for makedepend
2864    CPPINCLUDES = ${CPPINCLUDES}
2865  # Flags for KPP  # Flags for KPP
2866  KFLAGS1 = ${KFLAGS1}  KFLAGS1 = ${KFLAGS1}
2867  KFLAGS2 = ${KFLAGS2}  KFLAGS2 = ${KFLAGS2}
2868  # Optim./debug for FC  # Optim./debug for FC
2869  FFLAGS = ${FFLAGS}  FFLAGS = ${FFLAGS} ${FEXTRAFLAGS}
2870  FOPTIM = ${FOPTIM}  FOPTIM = ${FOPTIM}
2871  # Optim./debug for FC  # Optim./debug for FC
2872  F90FLAGS = ${F90FLAGS}  F90FLAGS = ${F90FLAGS}
2873  F90OPTIM = ${F90OPTIM}  F90OPTIM = ${F90OPTIM}
2874    F90FIXEDFORMAT = ${F90FIXEDFORMAT}
2875  # Flags for CC  # Flags for CC
2876  CFLAGS = ${CFLAGS}  CFLAGS = ${CFLAGS}
2877  # Files that should not be optimized  # Files that should not be optimized
# Line 2422  NOOPTFILES = ${NOOPTFILES} Line 2879  NOOPTFILES = ${NOOPTFILES}
2879  NOOPTFLAGS = ${NOOPTFLAGS}  NOOPTFLAGS = ${NOOPTFLAGS}
2880  # Flags and libraries needed for linking  # Flags and libraries needed for linking
2881  LIBS = ${LIBS}  LIBS = ${LIBS}
2882  # Name of the Mekfile  # Name of the makefile
2883  MAKEFILE=${MAKEFILE}  MAKEFILE = ${MAKEFILE}
2884    # Name of the make program
2885    MAKE = ${MAKE}
2886    
2887  EOF  EOF
2888    
2889  cat srclist.inc       >> $MAKEFILE  cat F77srclist.tmp      >> $MAKEFILE
2890  cat csrclist.inc      >> $MAKEFILE  cat nonADF77srclist.tmp >> $MAKEFILE
2891  cat f90srclist.inc    >> $MAKEFILE  cat csrclist.tmp        >> $MAKEFILE
2892  cat hlist.inc         >> $MAKEFILE  cat F90srclist.tmp      >> $MAKEFILE
2893  cat ad_flow_files.inc >> $MAKEFILE  cat hsrclist.tmp        >> $MAKEFILE
2894    cat ad_flow_files.tmp   >> $MAKEFILE
2895    
2896    rm -f F77srclist.tmp nonADF77srclist.tmp csrclist.tmp F90srclist.tmp hsrclist.tmp ad_flow_files.tmp
2897    
2898  echo >> $MAKEFILE  echo >> $MAKEFILE
2899  echo 'F77FILES =  $(SRCFILES:.F=.'$FS')'      >> $MAKEFILE  
2900  echo 'F90FILES =  $(F90SRCFILES:.F90=.'$FS90')' >> $MAKEFILE  # add definitions for preprocessed sources
2901  echo 'OBJFILES =  $(SRCFILES:.F=.o) $(CSRCFILES:.c=.o) $(F90SRCFILES:.F90=.o)' >> $MAKEFILE  # and note that not all systems allow case sensitive extensions
2902    # hence the $FS and $FS90 here.
2903    # for fixed format f90 files we use ff90 or FF90 resp
2904    # but these are not expected to be the original source files
2905    
2906    echo 'F77_PP_SRC_FILES = $(F77_SRC_FILES:.F=.'$FS')'      >> $MAKEFILE
2907    echo 'F90_PP_SRC_FILES = $(F90_SRC_FILES:.F90=.'$FS90')' >> $MAKEFILE
2908    echo 'OBJFILES= $(F77_SRC_FILES:.F=.o) $(C_SRC_FILES:.c=.o) $(F90_SRC_FILES:.F90=.o)' >> $MAKEFILE
2909    echo 'FLOWFILES =  $(AD_FLOW_FILES:.flow=.flowdir)' >> $MAKEFILE
2910  echo >> $MAKEFILE  echo >> $MAKEFILE
2911  echo '.SUFFIXES:' >> $MAKEFILE  echo '.SUFFIXES:' >> $MAKEFILE
2912  echo '.SUFFIXES: .o .'$FS' .p .F .c .'$FS90' .F90' >> $MAKEFILE  echo '.SUFFIXES: .o .'$FS' .p .F .c .f'$FS90' .'$FS90' .FF90 .F90 .flowdir .flow' >> $MAKEFILE
 rm -f srclist.inc csrclist.inc hlist.inc flist.tmp clist.tmp f90srclist.inc  
 rm -f ad_flow_files.inc  
2913    
2914  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
2915    
2916  all: \$(EXECUTABLE)  all: fwd_exe_target
2917  \$(EXECUTABLE): \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(OBJFILES) \$(EMBEDDED_FILES)  fwd_exe_target:
2918            @echo Update AD_CONFIG.h and make \$(EXECUTABLE)
2919            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Forward version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
2920            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
2921            @-rm -f ad_config.template
2922            \$(MAKE) -f \$(MAKEFILE) \$(EXECUTABLE)
2923    
2924    \$(EXECUTABLE): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(OBJFILES) \$(EMBEDDED_FILES)
2925          @echo Creating \$@ ...          @echo Creating \$@ ...
2926          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)          \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) \$(LIBS)
2927    
2928  depend:  depend:
2929          @make links          @\$(MAKE) -f \$(MAKEFILE) links
2930          \$(MAKEDEPEND) -o .$FS \$(DEFINES) \$(INCLUDES) \$(SRCFILES)          \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(CPPINCLUDES) \$(F77_SRC_FILES)
2931          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)          \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
2932          -rm -f makedepend.out          -rm -f makedepend.out
2933    
# Line 2458  lib: libmitgcmuv.a Line 2935  lib: libmitgcmuv.a
2935    
2936  libmitgcmuv.a: \$(OBJFILES)  libmitgcmuv.a: \$(OBJFILES)
2937          ar rcv libmitgcmuv.a \$(OBJFILES)          ar rcv libmitgcmuv.a \$(OBJFILES)
2938            ar d   libmitgcmuv.a main.o
2939    
2940  links: \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(SPECIAL_FILES)  obj: \$(OBJFILES)
2941    
2942  small_f: \$(F77FILES) \$(F90FILES)  links: \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(SPECIAL_FILES)
2943    
2944    small_f: \$(F77_PP_SRC_FILES) \$(F90_PP_SRC_FILES)
2945    
2946  output.txt: \$(EXECUTABLE)  output.txt: \$(EXECUTABLE)
2947          @printf 'running ... '          @printf 'running ... '
2948          @\$(EXECUTABLE) > \$@          @\$(EXECUTABLE) > \$@
2949    
2950    # remove most of the files that "make" generates
2951  clean:  clean:
2952          -rm -rf *.o *.$FS *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template          -rm -rf *.p *.$FS90 *.mod ${RMFILES} work.{pc,pcl} *.template
2953            -rm -rf *.o
2954            -rm -rf *.$FS *.flowdir
2955            -rm -rf *.f$FS90 \$(AD_CLEAN) ad_input*
2956    
2957    # remove most of the files that "make" and "make depend" generate
2958  Clean:  Clean:
2959          @make clean          @\$(MAKE) -f \$(MAKEFILE) clean
2960          @make cleanlinks          @\$(MAKE) -f \$(MAKEFILE) cleanlinks
2961          -rm -f \$(SPECIAL_FILES)          -rm -f \$(SPECIAL_FILES) f90mkdepend.log $MAKEFILE.old
2962          -rm -f genmake_state genmake_*optfile genmake_warnings make.log run.log *.bak          -rm -f taf_command taf_output taf_ad.log taf_ad_flow.log taf_ftl.log
2963    
2964    # remove also the executable, files that "genmake2" generates (except Makefile)
2965    #         and output from a run (plus log files from testreport)
2966  CLEAN:  CLEAN:
2967          @make Clean          @\$(MAKE) -f \$(MAKEFILE) Clean
2968            -rm -f \$(EXECUTABLE) \$(EXE_AD) \$(EXE_FTL) *.bak
2969            -rm -f $LOGFILE genmake_state genmake_*optfile
2970            -rm -f SIZE.h.mpi genmake.tr_log make.tr_log
2971            -rm -rf mpi_headers mnc_test_*
2972          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;          -find \$(EXEDIR) -name "*.meta" -exec rm {} \;
2973          -find \$(EXEDIR) -name "*.data" -exec rm {} \;          -find \$(EXEDIR) -name "*.data" -exec rm {} \;
2974          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;          -find \$(EXEDIR) -name "fort.*" -exec rm {} \;
2975          -rm -f \$(EXECUTABLE) \$(EXE_AD) *.txt STD* *diagnostics.log datetime          -rm -f *.txt STD* *diagnostics.log datetime
2976          -rm -rf mnc_test_*          -rm -f *_MIT_CE_000.opt0000 costfunction*0000 costfinal
2977            -rm -f divided.ctrl snapshot* oad_cp.000.[0-9][0-9][0-9][0-9][0-9]
2978    
 #eh3 Makefile: makefile  
2979  makefile:  makefile:
2980          $THIS_SCRIPT $G2ARGS          $THIS_SCRIPT $G2ARGS
2981  cleanlinks:  cleanlinks:
2982          -find . -type l -exec rm {} \;          -find . -type l -exec rm {} \;
2983    
2984  # Special targets (SPECIAL_FILES) which are create by make  # Special targets (SPECIAL_FILES) which are created by make
2985  ${PACKAGES_DOT_H}:  ${PACKAGES_DOT_H}:
2986          @echo Creating \$@ ...          @echo Creating \$@ ...
2987          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" \$(DISABLED_PACKAGES) " " "Enabled packages:" \$(ENABLED_PACKAGES) > \$@
2988  AD_CONFIG.h:  AD_CONFIG.h:
2989          @echo Creating \$@ ...          @echo Creating \$@ ...
2990          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > \$@          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > \$@
2991  FC_NAMEMANGLE.h:  FC_NAMEMANGLE.h:
2992          @echo Creating \$@ ...          @echo Creating \$@ ...
2993          echo "$FC_NAMEMANGLE" > \$@          echo "$FC_NAMEMANGLE" > \$@
# Line 2513  if test "x$EMBED_SRC" = xt ; then Line 3006  if test "x$EMBED_SRC" = xt ; then
3006    
3007  decode_files.o : EMBEDDED_FILES.h  decode_files.o : EMBEDDED_FILES.h
3008    
3009  ##  \$(F77FILES)  ##  \$(F77_PP_SRC_FILES)
3010  all_fF.tar.gz : \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile  all_fF.tar.gz : \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3011          @echo Creating \$@ ...          @echo Creating \$@ ...
3012          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(SRCFILES) \$(CSRCFILES) \$(HEADERFILES) \$(F90SRCFILES) \$(F77FILES) Makefile          -tar -hcf all_fF.tar \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) \$(F77_PP_SRC_FILES) Makefile
3013          -rm -f all_fF.tar.gz          -rm -f all_fF.tar.gz
3014          -gzip all_fF.tar          -gzip all_fF.tar
3015    
# Line 2534  cat >>$MAKEFILE <<EOF Line 3027  cat >>$MAKEFILE <<EOF
3027  ## This nullifies any default implicit rules concerning these two file types:  ## This nullifies any default implicit rules concerning these two file types:
3028  ## %.o : %.F  ## %.o : %.F
3029    
3030    # C preprocessing and replacing the _d in constants:
3031    CPPCMD = cat \$< | ${CPP} \$(DEFINES) \$(INCLUDES) | ${S64}
3032    
3033  .F.$FS:  .F.$FS:
3034          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3035  .$FS.o:  .$FS.o:
3036          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<          \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3037    .F.o:
3038            \$(FC) \$(FFLAGS) \$(FOPTIM) -c \$<
3039  .F90.$FS90:  .F90.$FS90:
3040          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD)  > \$@
3041    .FF90.f$FS90:
3042            \$(CPPCMD)  > \$@
3043  .$FS90.o:  .$FS90.o:
3044          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<          \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$<
3045    .f$FS90.o:
3046            cp \$< \$(basename  \$<).f90
3047            \$(F90C) \$(F90FLAGS) \$(F90OPTIM) -c \$(F90FIXEDFORMAT) \$(basename  \$<).f90
3048  .c.o:  .c.o:
3049          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<          \$(CC) \$(CFLAGS) \$(DEFINES) \$(INCLUDES) -c \$<
3050    .flow.flowdir:
3051            \$(CPPCMD) > \$@
3052    
3053  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain  # Special exceptions that use the ( .F - .p - .$FS - .o ) rule-chain
3054  .F.p:  .F.p:
3055          \$(CPP) \$(DEFINES) \$(INCLUDES) > \$@          \$(CPPCMD) > \$@
3056  .p.$FS:  .p.$FS:
3057          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<          \$(KPP) \$(KFLAGS1)\$@ \$(KFLAGS2) \$<
3058    
3059    EOF
3060    
3061  #=========================================  #=========================================
3062  #===  Automatic Differentiation Rules  ===  #===  Automatic Differentiation Rules  ===
3063    #===  for TAMC/TAF  ======================
3064    
3065    if test "x$OPENAD" = x ; then
3066    
3067    cat >>$MAKEFILE <<EOF
3068    
3069  TAMC           = ${TAMC}  TAMC           = ${TAMC}
3070  TAF            = ${TAF}  TAF            = ${TAF}
3071    
3072  TAF_EXTRA      = ${TAF_EXTRA}  TAF_EXTRA      = ${TAF_EXTRA}
3073  TAMC_EXTRA     = ${TAMC_EXTRA}  TAMC_EXTRA     = ${TAMC_EXTRA}
3074    LOCAL_MPI_HEADERS    = ${LOCAL_MPI_HEADERS}
3075    
3076  EOF  EOF
3077    
# Line 2576  done Line 3089  done
3089  echo "  Add the source list for AD code generation"  echo "  Add the source list for AD code generation"
3090  echo >> $MAKEFILE  echo >> $MAKEFILE
3091  printf "AD_FILES = " >> $MAKEFILE  printf "AD_FILES = " >> $MAKEFILE
3092  AD_FILES=`cat ad_files`  AD_FILES=`cat adSrcFiles.tmp`
3093  for i in $AD_FILES ; do  for i in $AD_FILES ; do
3094      echo    " \\" >> $MAKEFILE      echo    " \\" >> $MAKEFILE
3095      printf " $i" >> $MAKEFILE      printf " $i" >> $MAKEFILE
3096  done  done
3097  echo >> $MAKEFILE  echo >> $MAKEFILE
3098  rm -f ad_files  rm -f adSrcFiles.tmp
3099    
3100  cat >>$MAKEFILE <<EOF  cat >>$MAKEFILE <<EOF
3101    
3102  # ... AD ...  # ... AD ...
3103  adall: \$(EXE_AD)  adall: ad_exe_target
3104  adtaf: ad_taf_output.$FS  adtaf: ad_taf_output.$FS
3105  adtamc: ad_tamc_output.$FS  adtamc: ad_tamc_output.$FS
3106    
3107  ad_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ad_exe_target:
3108          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ad_config.template          @echo Update AD_CONFIG.h and make \$(EXE_AD)
3109            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3110            @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3111            @-rm -f ad_config.template
3112            \$(MAKE) -f \$(MAKEFILE) \$(EXE_AD)
3113    
3114    ad_input_code.$FS: \$(AD_FILES) \$(AD_FLOW_FILES)
3115            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Adjoint version" -bAD_CONFIG_H -DALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > ad_config.template
3116          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3117          -rm -f ad_config.template          @-rm -f ad_config.template
3118          @make \$(F77FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3119          @make \$(AD_FLOW_FILES)          @\$(MAKE) -f \$(MAKEFILE) \$(FLOWFILES)
3120          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ad_input_code.$FS          cat \$(FLOWFILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ad_input_code.$FS
3121    
3122  ad_taf_output.$FS: ad_input_code.$FS  ad_taf_output.$FS: ad_input_code.$FS
3123          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3124            ls -l ad_input_code_ad.$FS
3125          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3126    
3127  adtafonly:  adtafonly:
3128          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS          \$(TAF) \$(AD_TAF_FLAGS) \$(TAF_EXTRA) ad_input_code.$FS
3129            ls -l ad_input_code_ad.$FS
3130          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_taf_output.$FS
3131    
3132  \${EXE_AD}: ad_taf_output.o \$(OBJFILES)  \$(EXE_AD): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ad_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3133          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_taf_output.o \$(LIBS)
3134    
3135  ad_tamc_output.$FS: ad_input_code.$FS  ad_tamc_output.$FS: ad_input_code.$FS
3136          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS          \$(TAMC) \$(AD_TAMC_FLAGS) \$(TAMC_EXTRA) ad_input_code.$FS
3137          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS          cat ad_input_code_ad.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ad_tamc_output.$FS
3138    
3139  ad_tamc: ad_tamc_output.o \$(OBJFILES)  ad_tamc: ad_tamc_output.o \$(OBJFILES)
3140          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_AD} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ad_tamc_output.o \$(LIBS)
3141    
3142  adonlyfwd:  adonlyfwd:
3143          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.onlyfwd.diff
3144    
3145  adtrick:  adtrick:
3146          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff          patch < \$(TOOLSDIR)/ad_taf_output.f.adtrick.diff
3147    
3148    adobj: ad_taf_output.o \$(OBJFILES)
3149    
3150  # ... FTL ...  # ... FTL ...
3151  ftlall: ftl_taf  ftlall: ftl_exe_target
3152  ftltaf: ftl_taf_output.$FS  ftltaf: ftl_taf_output.$FS
3153  ftltamc: ftl_tamc_output.$FS  ftltamc: ftl_tamc_output.$FS
3154    
3155  ftl_input_code.$FS: \$(AD_FILES) \$(HEADERFILES)  ftl_exe_target:
3156          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @echo Update AD_CONFIG.h and make \$(EXE_FTL)
3157          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3158          -rm -f ftl_config.template          @cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3159          @make \$(F77FILES)          @-rm -f ad_config.template
3160          @make \$(AD_FLOW_FILES)          \$(MAKE) -f \$(MAKEFILE) \$(EXE_FTL)
3161          cat \$(AD_FLOW_FILES) \$(AD_FILES) > ftl_input_code.$FS  
3162    ftl_input_code.$FS: \$(AD_FILES)
3163            @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "TangLin version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3164            cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3165            @-rm -f ad_config.template
3166            @\$(MAKE) -f \$(MAKEFILE) \$(F77_PP_SRC_FILES)
3167            @\$(MAKE) -f \$(MAKEFILE) \$(AD_FLOW_FILES)
3168            cat \$(AD_FLOW_FILES) \$(AD_FILES) | sed -f \$(TOOLSDIR)/remove_comments_sed > ftl_input_code.$FS
3169    
3170  ftl_taf_output.$FS: ftl_input_code.$FS  ftl_taf_output.$FS: ftl_input_code.$FS
3171          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3172            ls -l ftl_input_code_ftl.$FS
3173          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3174    
3175  ftltafonly:  ftltafonly:
3176          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS          \$(TAF) \$(FTL_TAF_FLAGS) \$(TAF_EXTRA) ftl_input_code.$FS
3177            ls -l ftl_input_code_ftl.$FS
3178          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_taf_output.$FS
3179    
3180  ftl_taf: ftl_taf_output.o \$(OBJFILES)  \$(EXE_FTL): \$(SPECIAL_FILES) \$(F77_SRC_FILES) \$(C_SRC_FILES) \$(H_SRC_FILES) \$(F90_SRC_FILES) ftl_taf_output.o \$(OBJFILES) \$(EMBEDDED_FILES)
3181          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)          \$(LINK) -o \${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_taf_output.o \$(LIBS)
3182    
3183  ftl_tamc_output.$FS: ftl_input_code.$FS  ftl_tamc_output.$FS: ftl_input_code.$FS
3184          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS          \$(TAMC) \$(FTL_TAMC_FLAGS) \$(TAMC_EXTRA) ftl_input_code.$FS
3185          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS          cat ftl_input_code_ftl.$FS | sed -f \$(TOOLSDIR)/adjoint_sed > ftl_tamc_output.$FS
3186    
3187  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)  ftl_tamc: ftl_tamc_output.o \$(OBJFILES)
3188          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)          \$(LINK) -o ${EXE_FTL} \$(FFLAGS) \$(FOPTIM) \$(OBJFILES) ftl_tamc_output.o \$(LIBS)
   
3189    
3190  # ... SVD ...  # ... SVD ...
3191  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS  svdtaf: ad_taf_output.$FS ftl_taf_output.$FS
# Line 2675  svd_touch: Line 3207  svd_touch:
3207          touch ad_taf_output.$FS ftl_taf_output.$FS          touch ad_taf_output.$FS ftl_taf_output.$FS
3208          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ad_taf_output.$FS
3209          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS          \$(FC) \$(FFLAGS) \$(FOPTIM) -c ftl_taf_output.$FS
3210          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > ftl_config.template          @$BASH\$(TOOLSDIR)/convert_cpp_cmd2defines "SVD version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -DALLOW_TANGENTLINEAR_RUN > ad_config.template
3211          cmp ftl_config.template AD_CONFIG.h || cat ftl_config.template > AD_CONFIG.h          cmp ad_config.template AD_CONFIG.h || cat ad_config.template > AD_CONFIG.h
3212          -rm -f ftl_config.template          @-rm -f ad_config.template
3213    
3214  #=========================================  EOF
3215    
3216    fi
3217    
3218    #===  for OpenAD  ========================
3219    
3220    if test "x$OPENAD" != x ; then
3221    
3222    # ============ begin OpenAD specific section ==============
3223    
3224    cat >>$MAKEFILE <<EOF
3225    
3226    # all the source files linked from the various locations:
3227    ALL_LINKED_FILES= \
3228    \$(F77_SRC_FILES) \
3229    \$(C_SRC_FILES) \
3230    \$(H_SRC_FILES) \
3231    \$(F90_SRC_FILES) \
3232    \$(SPECIAL_FILES)
3233    
3234    ifndef OPENADROOT
3235      \$(error "Error:  environment variable OPENADROOT not defined!")
3236    endif
3237    
3238    ifndef XAIFSCHEMAROOT
3239      \$(error "Error:  environment variable XAIFSCHEMAROOT not defined!")
3240    endif
3241    
3242    ifndef XAIFBOOSTERROOT
3243      \$(error "Error:  environment variable XAIFBOOSTERROOT not defined!")
3244    endif
3245    
3246    EOF
3247    
3248    echo "  Add the source list for common block to module conversion "
3249    echo >> $MAKEFILE
3250    printf "CB2M_F90_SRC_NAMES = " >> $MAKEFILE
3251    for i in `cat ${OAD_CB2M_FILES}` ; do
3252      echo    " \\" >> $MAKEFILE
3253      printf " $i" >> $MAKEFILE
3254    done
3255    echo >> $MAKEFILE
3256    
3257    echo "  Add the source list for AD code generation"
3258    echo >> $MAKEFILE
3259    printf "AD_FILES = " >> $MAKEFILE
3260    for i in `cat ${OAD_CB2M_FILES}` ; do
3261      echo    " \\" >> $MAKEFILE
3262      printf " ${i}_mod.f$FS90" >> $MAKEFILE
3263    done
3264    AD_FILES=`cat adSrcFiles.tmp`
3265    for i in $AD_FILES ; do
3266      basename=${i%%.f}
3267      toBeIgnored=`egrep ^$basename'[      ]*' ${OAD_DONT_COMPILE} ${OAD_DONT_TRANSFORM}`
3268      if test -z "$toBeIgnored" ; then
3269        echo    " \\" >> $MAKEFILE
3270        printf " $i" >> $MAKEFILE
3271      fi
3272    done
3273    echo >> $MAKEFILE
3274    rm -f adSrcFiles.tmp
3275    
3276    cat >>$MAKEFILE <<EOF
3277    
3278    adAll: \$(EXE_AD)
3279    .PHONY: adAll
3280    
3281    CB2M_F90_PP_SRC_FILES=\$(addsuffix _mod.f$FS90, \$(CB2M_F90_SRC_NAMES))
3282    
3283    .PRECIOUS: \$(CB2M_F90_PP_SRC_FILES) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90)
3284    
3285    .PHONY: adDepend
3286    adDepend: \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) \$(addsuffix _mod.FF90, \$(CB2M_F90_SRC_NAMES)) \$(F77_SRC_FILES:.F=_cb2m.FF90)
3287            \$(MAKEDEPEND) -f \$(MAKEFILE) -o .$FS \$(DEFINES) \$(INCLUDES) \$(F77_SRC_FILES)
3288            \$(TOOLSDIR)/f90mkdepend >> \$(MAKEFILE)
3289            -rm -f makedepend.out
3290    
3291    OPENAD_SUPPORT_F90_SRC_FILES = \
3292    w2f__types.F90 \
3293    OAD_active.F90 \
3294    OAD_cp.F90 \
3295    OAD_rev.F90 \
3296    OAD_tape.F90 \
3297    revolve.F90
3298    
3299    OPENAD_SUPPORT_C_SRC_FILES = \
3300    iaddr.c \
3301    timeRatio.c
3302    
3303    f95_test_mods.f90: \$(OPENAD_SUPPORT_F90_SRC_FILES:F90=$FS90)
3304            cat \$^ > \$@
3305    
3306    f95_test.f90: all_mods.xb.x2w.w2f.pp.f$FS90 \$(NON_AD_F77_SRC_FILES:.F=_cb2m.f$FS90) ad_input_code.w2f.pre.xb.x2w.w2f.td.pp.f$FS90
3307            cat \$^ > \$@
3308    
3309    f95_test.out: f95_test_mods.f90 f95_test.f90
3310            f95 -fixed -w=unused -maxcontin=132 -c f95_test_mods.f90 > \$@ 2>&1
3311            f95 -fixed -w=unused -maxcontin=132 -c -fixed f95_test.f90 >> \$@ 2>&1
3312    
3313    CB2M_AD_FILES=\$(AD_FILES:.f=_cb2m.f$FS90)
3314    
3315    AD_OBJ_FILES_S1=\$(OPENAD_SUPPORT_F90_SRC_FILES:.F90=.o) \$(OPENAD_SUPPORT_C_SRC_FILES:.c=.o)  OAD_intrinsics_oad.o \$(CB2M_AD_FILES:.f$FS90=_oad.o)
3316    
3317    AD_OBJ_FILES_S2=\$(AD_OBJ_FILES_S1) \$(NON_AD_F77_SRC_FILES:.F=_cb2m.o) \$(C_SRC_FILES:.c=.o) \$(F90_SRC_FILES:.F90=.o)
3318    
3319    \$(EXE_AD): \$(ALL_LINKED_FILES) \$(addsuffix _mod.h, \$(CB2M_F90_SRC_NAMES)) postProcess.tag \$(AD_OBJ_FILES_S2)
3320            \$(LINK) -o \$@ \$(FFLAGS) \$(FOPTIM) \$(AD_OBJ_FILES_S2) \$(LIBS)
3321    
3322    # create sources files modules from header files containing common blocks
3323    %_mod.FF90 : %.h \${OADTOOLS}/cb2mGetModules.csh \${OADTOOLS}/cb2mGetModules.awk
3324            \${OADTOOLS}/cb2mGetModules.csh $< \${OADTOOLS}/cb2mGetModules.awk
3325    
3326    # create new header files with USE statements for the new modules made above
3327    %_mod.h : %.h \${OADTOOLS}/cb2mGetHeaders.csh \${OADTOOLS}/cb2mGetHeaders.awk
3328            \${OADTOOLS}/cb2mGetHeaders.csh $< \${OADTOOLS}/cb2mGetHeaders.awk \$(CB2M_F90_SRC_NAMES)
3329    
3330    # change the include directives of everybody to refer to  the new header files with the USE statements
3331    %_cb2m.FF90 : %.F \${OADTOOLS}/cb2mUseModules.bash
3332            \${OADTOOLS}/cb2mUseModules.bash $< ${MPI}
3333    
3334    # makefile debug rule
3335    small_f: \$(CB2M_F90_PP_SRC_FILES)
3336    .PHONY: small_f
3337    
3338    ad_output.txt: \$(EXE_AD)
3339            @printf 'linking data files ... '
3340            \$(LN) -f ../input_ad/data* ../input_ad/eedata .
3341            \$(LN) -f ../../global_ocean.90x40x15/input/*.bin .
3342            @printf 'running ... '
3343            @./\$(EXE_AD) > \$@
3344    
3345    ad_input_code.f$FS90:  \$(CB2M_AD_FILES)
3346            cat \$^ > \$@
3347    
3348    # canonicalizer
3349    ad_input_code_sf.pre.f90 : \$(CB2M_AD_FILES)
3350            \${OPENADFORTTK_BASE}/tools/SourceProcessing/preProcess.py --timing --r8 -H -S  -o \$@ \$^
3351    
3352    # replace stop statements (to avoid the implied unstructured control flow)  with print statements
3353    ad_input_code_sf.pre.s2p.f90 : ad_input_code_sf.pre.f90
3354            cat \$< | sed -f \${OADTOOLS}/stop2print.sed > ad_input_code_sf.pre.s2p.f90
3355    
3356    # F -> WHIRL
3357    ad_input_code_sf.pre.s2p.B: ad_input_code_sf.pre.s2p.f90
3358            \${OPEN64ROOT}/crayf90/sgi/mfef90 -r8 -z -F ad_input_code_sf.pre.s2p.f90
3359    
3360    # WHIRL -> XAIF
3361    ad_input_code_sf.pre.s2p.xaif : ad_input_code_sf.pre.s2p.B
3362            \${OPENADFORTTK}/bin/whirl2xaif -s -n --debug 1 -o \$@ \$<
3363    
3364    # XAIF -> XAIF'
3365    ad_input_code_sf.pre.s2p.xb.xaif : ad_input_code_sf.pre.s2p.xaif xaif.xsd xaif_base.xsd xaif_inlinable_intrinsics.xsd xaif_derivative_propagator.xsd xaif_output.xsd
3366            \${XAIFBOOSTERROOT}/xaifBooster/algorithms/BasicBlockPreaccumulationReverse/driver/oadDriver -f -t forward_step -i \$< -c \${XAIFSCHEMAROOT}/schema/examples/inlinable_intrinsics.xaif -o \$@ -I -r
3367    
3368    # XAIF' -> WHIRL'
3369    ad_input_code_sf.pre.s2p.xb.x2w.B : ad_input_code_sf.pre.s2p.xb.xaif
3370            \${OPENADFORTTK}/bin/xaif2whirl --debug 1 ad_input_code_sf.pre.s2p.B \$<
3371    
3372    # WHIRL' -> F'
3373    ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.B
3374            \${OPEN64ROOT}/whirl2f/whirl2f -FLIST:ftn_file=\$@ -openad \$<
3375    
3376    # insert template directives
3377    ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90: ad_input_code_sf.pre.s2p.xb.x2w.w2f.f$FS90 \${OADTOOLS}/insertTemplateDir.bash
3378            \${OADTOOLS}/insertTemplateDir.bash \$< \$@
3379    
3380    PPEXTRAS=\$(wildcard \${OADTOOLS}/ad_template.*.F) \${OADTOOLS}/ad_inline.F
3381    # postprocess F'
3382    postProcess.tag: ad_input_code_sf.pre.s2p.xb.x2w.w2f.td.f$FS90 \$(PPEXTRAS:.F=.f) | w2f__types.f90
3383            \${OPENADFORTTK_BASE}/tools/SourceProcessing/postProcess.py --progress --timing --infoUnitFile w2f__types.f90 --outputFormat=fixed --separateOutput --pathSuffix "" --filenameSuffix "_oad" -m r -i \${OADTOOLS}/ad_inline.f \$<
3384            # the target is a placeholder to trigger a single execution of the rule
3385            touch \$@
3386    # put this so make knows about the postprocessing output
3387    OAD_intrinsics_oad.f \$(CB2M_AD_FILES:.f$FS90=_oad.f): postProcess.tag
3388    
3389    # link the XAIF schema files
3390    %.xsd:
3391            \$(LN) \${XAIFSCHEMAROOT}/schema/\$@ .
3392    
3393    # link the support files:
3394    \$(OPENAD_SUPPORT_F90_SRC_FILES) \$(OPENAD_SUPPORT_C_SRC_FILES):
3395            \$(LN) \${OADTOOLS}/\$@ .
3396    
3397    AD_CLEAN += *_mod.h *_mod.F90 *.FF90 *.mod-whirl temp.sed oad_cp.* postProcess.tag \$(PPEXTRAS:.F=.f)
3398    
3399    # ============ end OpenAD specific section ==============
3400    
3401  EOF  EOF
3402    
3403    fi
3404    
3405    #=========================================
3406    
3407  if test "x$EXEHOOK" != x ; then  if test "x$EXEHOOK" != x ; then
3408      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE      printf "\nexehook:\n\t%s\n" $EXEHOOK >> $MAKEFILE
3409  fi  fi
# Line 2718  printf "\n\n# DO NOT DELETE\n" >> $MAKEF Line 3439  printf "\n\n# DO NOT DELETE\n" >> $MAKEF
3439  printf "\n===  Done  ===\n"  printf "\n===  Done  ===\n"
3440    
3441  # Create special header files  # Create special header files
3442  $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"  $BASH $TOOLSDIR/convert_cpp_cmd2defines -bPACKAGES_CONFIG_H "Disabled packages:" $DISABLED_PACKAGES " " "Enabled packages:" $ENABLED_PACKAGES > $PACKAGES_DOT_H".tmp"
3443  if test ! -f $PACKAGES_DOT_H ; then  if test ! -f $PACKAGES_DOT_H ; then
3444      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H      mv -f $PACKAGES_DOT_H".tmp" $PACKAGES_DOT_H
3445  else  else
# Line 2732  else Line 3453  else
3453      fi      fi
3454  fi  fi
3455  if test ! -f AD_CONFIG.h ; then  if test ! -f AD_CONFIG.h ; then
3456      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Warning - this file is automatically generated - do NOT edit" -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN -UALLOW_ECCO_OPTIMIZATION > AD_CONFIG.h      $BASH $TOOLSDIR/convert_cpp_cmd2defines "Default version" -bAD_CONFIG_H -UALLOW_ADJOINT_RUN -UALLOW_TANGENTLINEAR_RUN > AD_CONFIG.h
3457  fi  fi
3458    
   
3459  #  Write the "state" for future records  #  Write the "state" for future records
3460  if test "x$DUMPSTATE" != xf ; then  if test "x$DUMPSTATE" = xt ; then
3461      printf "" > genmake_state      printf "" > genmake_state
3462      for i in $gm_state ; do      for i in $gm_state ; do
3463          t1="t2=\$$i"          t1="t2=\$$i"
3464          eval $t1          eval $t1
3465          echo "$i='$t2'" >> genmake_state          echo "$i='$t2'" | sed -e 's/  */ /g' >> genmake_state
3466      done      done
3467  fi  fi

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